Citrus Sinensis ID: 018266

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Secondary Structure (PSIPRED)
cccccccccccccccHHHHcccccccEEEccccEEEcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccccHHHHHHccccccccccHHHHHHccccccccccccccHHHHHccccccccccHHHHHHHccccccccccccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHcccccEEEEccccccHHHHHHcccccccEEEEEcccccEEEccHHHHHHHHccccccccHHHHHHHHHHHHHHccccccEEcccccccHHHHcccccccccccccccccEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHcccccccHEEEEcccccEEEEccEEEEHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccHHHHHHHHHccccccccHcHHHHHHHcccccccccHHHHHHHHHcHHHHHcccccHHHEEcccccEEEEEccEEEEHHHHcccEEEEEEEccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHccccEEEccccHHHHHHHHHcccccccEEEEEcccccEEcccHHHHHHccccccccccHHHHHHHHHHHHHHHccccHccccccccEEEEEEEcccEEcccccccccEEEEEccHccccccHHHHEEEcccc
Coil and Loop (DISEMBL)
mardndqskfidssdFLTVLASEGVEFLLsrqgkvplsscggkticlffsanwcrpcktftpQLVQLYDTLRTRGTELEVIFISfdhdengfeehfkssdgtliEEDLIGLIedygadaypftRKRREELKAIddskrqggKLEQLLAIEgrdyvlsrdhrkitvSELAGKTIglyfgahwcppcrsfTSQLIEVYNELKTTANHCFEVVLVstdrdhkefdlnhsimpwlaipyedrARQDLCRIFNikgipalvligpdgktisTNGKEMISLygakafpfteSRIAEIETALKKEgdalprevkdvkheHELKLDMAKAYVCDcckmrgrfwafscdvcnydlhpkcveginlnl
Flexible Loop (DISEMBL)
mardndqskfidssdflTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELkaiddskrqggkleqllaiegrdyvlsrdhRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALkkegdalprEVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKcveginlnl
Low Complexity Region (SEG)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Disordered region (IsUnstruct)
*************SDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTR******************LEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETAL*************VKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN***
Disordered Region (DISOPRED)
********************ASEGV*************SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAE*************REVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINL**
Disordered Region (DISEMBL)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Disordered Region (DISPRO)
*************SDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGINLNL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q8VZQ0	392	Probable nucleoredoxin 3	yes	no	0.983	0.897	0.625	1e-142
Q7XPE8	471	Probable nucleoredoxin 3	no	no	0.863	0.656	0.513	2e-97
O80763	578	Probable nucleoredoxin 1	no	no	0.930	0.576	0.385	1e-75
Q7Y0E8	569	Probable nucleoredoxin 1-	no	no	0.952	0.599	0.361	1e-64
Q7Y0F2	581	Probable nucleoredoxin 1-	no	no	0.946	0.583	0.355	1e-63
Q0JIL1	394	Probable nucleoredoxin 2	no	no	0.896	0.814	0.342	8e-59
Q503L9	418	Nucleoredoxin OS=Danio re	yes	no	0.770	0.660	0.313	1e-27
Q6GM16	414	Nucleoredoxin OS=Xenopus	N/A	no	0.634	0.548	0.3	5e-26
Q6DKJ4	435	Nucleoredoxin OS=Homo sap	yes	no	0.329	0.271	0.421	1e-23
A6QLU8	435	Nucleoredoxin OS=Bos taur	yes	no	0.329	0.271	0.421	2e-23

>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2 SV=1

 Score =  506 bits (1302), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/385 (62%), Positives = 294/385 (76%), Gaps = 33/385 (8%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSA WCRPCK 
Sbjct: 1   MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF----------------------- 96
           FTP+L++LY+ L+ RG ELE+IF+SFDHD   F EHF                       
Sbjct: 61  FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120

Query: 97  ---------KSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 147
                      SD   + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180

Query: 148 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT    F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240

Query: 208 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
           EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300

Query: 268 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 327
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360

Query: 328 CKMRGRFWAFSCDVCNYDLHPKCVE 352
           CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 8

>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica GN=Os04g0608600 PE=2 SV=2

 Score =  356 bits (913), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/345 (51%), Positives = 225/345 (65%), Gaps = 36/345 (10%)

Query: 16  FLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
           ++++    GV  LLS  GK +PLSS  GK ICLFFSA+WCRPC+ FTP+L+Q+Y  LR  
Sbjct: 14  YVSIPQLAGVGTLLSNGGKEIPLSSIEGKRICLFFSAHWCRPCRNFTPKLLQIYRKLRNT 73

Query: 75  GTELEVIFISFDHDENGFEEHFKS-----------------------------------S 99
              +E+IFIS D DE  F ++FK                                    S
Sbjct: 74  CKNMEIIFISLDRDEISFLDYFKGMPWLALPFDTGLRQKLCVQFDIEHIPALIPLSTTLS 133

Query: 100 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 159
            G  +EED + L+E+YG DAYPF  KRR EL+ +DD++RQGG L QLL  + R+YV+S D
Sbjct: 134 HGFRVEEDAVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISAD 193

Query: 160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 219
             K  +S+L GKTIGLYFGAHWCPPCR+FT QL E Y+ELK      F+V+ +S DR+ +
Sbjct: 194 GIKTPISDLNGKTIGLYFGAHWCPPCRAFTKQLREAYDELKALRPGNFQVIFISMDRNEE 253

Query: 220 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 279
           EF  + S MPW AIPY D   Q+L RIF IKGIP L+++GPDGK   T+G+ +IS YGA 
Sbjct: 254 EFQASLSAMPWFAIPYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGRRIISKYGAM 313

Query: 280 AFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
           AFPFTESR  E+E  LKKE D+LP  V+D +HEHEL+LDMAKAY+
Sbjct: 314 AFPFTESRAYELEEVLKKERDSLPHRVRDHRHEHELELDMAKAYL 358

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/368 (38%), Positives = 209/368 (56%), Gaps = 35/368 (9%)

Query: 18  TVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT 76
           +VL +   +F++S  G KVP+S   GKTI L FS    R C   TP+LV+ Y  L+    
Sbjct: 178 SVLVTPSRDFVISPDGNKVPVSELEGKTIGLLFSVASYRKCTELTPKLVEFYTKLKENKE 237

Query: 77  ELEVIFISFDHDENGFEEHFKSS--------------------------------DGTLI 104
           + E++ IS + DE  F + FK+                                 DG   
Sbjct: 238 DFEIVLISLEDDEESFNQDFKTKPWLALPFNDKSGSKLARHFMLSTLPTLVILGPDGKTR 297

Query: 105 EEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT 164
             ++   I+DYG  AYPFT ++ +ELK ++ +K +   LE LL     +YVL +D  K+ 
Sbjct: 298 HSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKDGAKVL 357

Query: 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224
           VS+L GKTI +YF AHWCPPCR+FT +L+EVY ++K   N  FE++ +S+DRD + FD  
Sbjct: 358 VSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKER-NEAFELIFISSDRDQESFDEY 416

Query: 225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 284
           +S MPWLA+P+ D  +  L + F + GIP L  +GP G+T++   ++++  +GA A+PFT
Sbjct: 417 YSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGADAYPFT 476

Query: 285 ESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCN 343
           E R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W++ CD C+
Sbjct: 477 EERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECD 536

Query: 344 YDLHPKCV 351
           +DLH KC 
Sbjct: 537 FDLHAKCA 544

Probable thiol-disulfide oxidoreductase required for pollen tube growth and pollen function in the pistil. Seems not to be required for in vitro pollen tube growth. May be involved in the generation of lipid signaling molecules in pistil.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica GN=Os03g0405500 PE=2 SV=1

 Score =  246 bits (629), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 202/379 (53%), Gaps = 38/379 (10%)

Query: 12  DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           D+    +VL +   ++LLS +G +VP+S   GK + L F  N   P   FT  L + Y+ 
Sbjct: 165 DNQTVQSVLGTPTRDYLLSNKGDRVPISDLEGKYVGLCFVVNGYGPVVQFTSLLAKFYEK 224

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKS-------------------------------- 98
           L+  G + EV+ +S D DE    E F                                  
Sbjct: 225 LKEVGEKFEVVAVSLDSDEELSNESFAGMPWLAIPQEDKMGEKLARYFELRGLPTLVLIG 284

Query: 99  SDGTLIEEDLIGLIEDYGADA---YPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 155
            DG  +  ++  +I+++G DA   +PFT ++ E L     +K +   LE LL I   D+V
Sbjct: 285 PDGKTLNNNVADIIDEHGQDAWEGFPFTAEKMEILAEKAKAKAELQTLESLLVIGDLDFV 344

Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L +D  K+ VSEL GKT+ LYF A WC PCR+F  +L++ YN++K   N  FE++ +S+D
Sbjct: 345 LGKDGAKVPVSELVGKTVLLYFSAKWCGPCRAFLPKLVDEYNKIKEKHND-FEIIFISSD 403

Query: 216 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 275
           RD   +D   S MPWLA+P  D  +Q L + F ++GIP+LV IG DG+T++ + K  ++ 
Sbjct: 404 RDQSSYDEFFSGMPWLALPLGDERKQHLSKTFRVRGIPSLVAIGADGRTVARDAKTPLTA 463

Query: 276 YGAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRF 334
           +GA AFPFTE R+ E+E  + +     P ++K   H EHEL L     Y CD C   G  
Sbjct: 464 HGADAFPFTEERLLEMERKIDEMAKGWPGKLKHELHDEHELVLTRCTTYGCDGCDEMGSS 523

Query: 335 WAFSCDVCNYDLHPKCVEG 353
           W++ C  C++DLHPKC  G
Sbjct: 524 WSYRCRECDFDLHPKCALG 542

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica GN=Os03g0405900 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/380 (35%), Positives = 198/380 (52%), Gaps = 41/380 (10%)

Query: 12  DSSDFLTVLASEGVEFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           D+    ++  +   ++L++ +G KVP+S   GK + L F  N   P   FT  L ++Y+ 
Sbjct: 172 DNQTIHSLFGTPTRDYLITNKGDKVPISDLEGKYVGLCFVVNGYGPVVQFTSVLAKIYEK 231

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFK--------------------------------S 98
           L+  G + EV+ +S D DE  F E F                                  
Sbjct: 232 LKAVGEKFEVVMVSLDGDEESFNESFADMPWLAIPQGDKMCEKLARYFELSGLPMLVLIG 291

Query: 99  SDGTLIEEDLIGLIEDYGADA---YPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYV 155
            DG  + +D+  +I+++G DA   +PF+ ++ E L     +K +   LE LL     D+V
Sbjct: 292 PDGKTLNDDIADIIDEHGPDAWEGFPFSAEKLEILAEKAKAKAESQTLESLLVTGDLDFV 351

Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L +D  K+ VSEL GKT+ LYF A WCPPCR+F  +L+  YN++K   N  FE+V +S+D
Sbjct: 352 LGKDGAKVPVSELVGKTVLLYFSAKWCPPCRAFLPKLVNEYNKIKEKHND-FEIVFISSD 410

Query: 216 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 275
           R+   +D   S MPWLA+P  D  +Q L +IF I GIP+LV IGPDGKT++ + K  +  
Sbjct: 411 REQSSYDEFFSGMPWLALPLGDERKQQLSKIFKITGIPSLVAIGPDGKTVTKDAKTPLVA 470

Query: 276 YGAKAFPFT----ESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMR 331
           +GA AFPFT    +    E E  +       P ++K   H+HEL L     Y CD C   
Sbjct: 471 HGADAFPFTEEKLQELEKEKEKKINDMAKGWPEKLKHDLHDHELVLTRCTTYGCDGCDEM 530

Query: 332 GRFWAFSCDVCNYDLHPKCV 351
           G  W++ C  C++DLHPKC 
Sbjct: 531 GDSWSYRCKECDFDLHPKCA 550

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica GN=Os01g0794400 PE=2 SV=1

 Score =  227 bits (579), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 194/362 (53%), Gaps = 41/362 (11%)

Query: 28  LLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
           L+S  G +V +S   GK I L+F+ANW   C+ FTP L   Y  L+  G   EVIF+S D
Sbjct: 26  LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEHGAGFEVIFVSCD 85

Query: 87  HDENGFE-----------------------EHFK----------SSDGTLIEEDLIGLIE 113
            +   FE                       E F+          + +G +++ D + L+ 
Sbjct: 86  ENRPSFERFHRAMPWPAVPFGDIGCKKRLSERFQVEGIPRLVVLAPNGEVVQPDAVELVH 145

Query: 114 DYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTI 173
            YG  A+PFT  R  EL+A +  K     LE++ ++ G+DYV +    ++ +S L GKT+
Sbjct: 146 RYGDRAFPFTSARVAELEADEQRKFASQTLEKIFSVSGKDYV-NGSQEQVPISSLVGKTV 204

Query: 174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI 233
           GLYF AH C PC  FT++L  +Y+ LK  A   FE++ +  D++   +  + S MPWLA+
Sbjct: 205 GLYFSAHRCAPCIKFTAKLAAIYSNLKGKAED-FEIIYIPMDKEEDGYLRSCSDMPWLAL 263

Query: 234 PYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 292
           PY+D A    L R F+++ IP LV++GPDGKT++  G+ +++LY   AFPFT+ +I  ++
Sbjct: 264 PYDDGASSGALARYFDVREIPTLVVVGPDGKTVTREGRNLVNLYFDMAFPFTDEQIRLLQ 323

Query: 293 TALKKEGDALPREVKDVKHEHELKLDMAKA----YVCDCCKMRGRFWAFSCDVCNYDLHP 348
               ++    P  ++   H HEL +   K+    Y+C  C  +G  WA+ C  C Y++H 
Sbjct: 324 EMEDEDAKGYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHL 383

Query: 349 KC 350
           +C
Sbjct: 384 RC 385

Probable thiol-disulfide oxidoreductase that may participate in various redox reactions.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q503L9|NXN_DANRE Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 138/297 (46%), Gaps = 21/297 (7%)

Query: 48  FFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKSSDGTLI 104
           +F  +   PCK F   L + Y   +       +LE++FIS D D+  +++  +      +
Sbjct: 36  YFGCSLNGPCKQFNASLTEFYSKFKKSSEHKDKLEIVFISSDQDQKQWQDFLQEMQWPAL 95

Query: 105 ----EEDLIGLIEDYGADAYP-------FTRK---RREELKAIDDSKRQGGKLEQLLAIE 150
                   + L   Y   + P        T K   R   L   DD K            E
Sbjct: 96  PFKDRHKKMKLWNKYKVTSIPSLVFIDAATGKVVCRNGLLVVRDDPKGLEFPWGPKPFAE 155

Query: 151 GRDYVLSRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV 209
                L R++R+ T S  L G  +G+YF AHWCPPCRS T  L+E Y ++K T    FE+
Sbjct: 156 VVSGPLLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQK-FEI 214

Query: 210 VLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTN 268
           V VS DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+L+  +G  I+  
Sbjct: 215 VFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQ 274

Query: 269 GK-EMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
           G+ E+++      FP+    + E+  +   +    P  V  V  E E +LD AK  +
Sbjct: 275 GRVEILNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6GM16|NXN_XENLA Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1

 Score =  119 bits (297), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 126/280 (45%), Gaps = 53/280 (18%)

Query: 45  ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI 104
           I L F      PC    P L   Y   R R   LE++F+S D D+  ++   K       
Sbjct: 35  IGLLFGCGMSAPCLQLLPGLKDFYCKTRDR---LEIVFVSSDPDQKKWQLFVK------- 84

Query: 105 EEDLIGLIEDYGADAYPFTRKRRE-------------ELKAIDDSKRQGGKLEQLLAI-- 149
                    D    A P+  K R+              L  I+ S  +      LL +  
Sbjct: 85  ---------DMPWLALPYQEKHRKLKLWNKFRISNIPSLIFIEASTVKTVCRNGLLLVKD 135

Query: 150 --EGRDY--------------VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLI 193
             EG ++              ++  + +    S L G  +G+YF A+WCPPCRS T  L+
Sbjct: 136 DPEGLEFPWGPKPFCEVIAGPLIRNNSQSQESSTLEGSYVGIYFSAYWCPPCRSLTRVLV 195

Query: 194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGI 252
           E Y ++K +    FE+VLVS DR  + F    S MPWLA+PY D AR+  L R++ I+GI
Sbjct: 196 ESYRKIKESGQK-FEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGI 254

Query: 253 PALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAEI 291
           P L+++ P G+ I+  G+ E++     K FP+    + E+
Sbjct: 255 PNLIILDPKGEVITRQGRVEVLRDIDCKEFPWHPKPVVEL 294

Functions as a redox-dependent negative regulator of the Wnt signaling pathway.

Xenopus laevis (taxid: 8355)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|Q6DKJ4|NXN_HUMAN Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 77/121 (63%), Gaps = 3/121 (2%)

Query: 173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLA 232
           +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS DR  + F    S MPWLA
Sbjct: 196 VGVYFSAHWCPPCRSLTRVLVESYRKIK-EAGQNFEIIFVSADRSEESFKQYFSEMPWLA 254

Query: 233 IPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAE 290
           +PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E
Sbjct: 255 VPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEVLNDEDCREFPWHPKPVLE 314

Query: 291 I 291
           +
Sbjct: 315 L 315

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

>sp|A6QLU8|NXN_BOVIN Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 3/121 (2%)

Query: 173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLA 232
           +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS DR    F    S MPWLA
Sbjct: 196 VGVYFSAHWCPPCRSLTRVLVESYRKIK-EAGQKFEIIFVSADRSEDSFKQYFSEMPWLA 254

Query: 233 IPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPFTESRIAE 290
           +PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+    + E
Sbjct: 255 VPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPWHPKPVLE 314

Query: 291 I 291
           +
Sbjct: 315 L 315

Functions as a redox-dependent negative regulator of the Wnt signaling pathway, possibly by preventing ubiquitination of DVL3 by the BCR(KLHL12) complex. May also function as a transcriptional regulator act as a regulator of protein phosphatase 2A (PP2A).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
224121244	401	predicted protein [Populus trichocarpa]	0.983	0.877	0.669	1e-151
296081801	1126	unnamed protein product [Vitis vinifera]	0.955	0.303	0.689	1e-151
18417767	392	putative nucleoredoxin 3 [Arabidopsis th	0.983	0.897	0.625	1e-141
297798848	392	predicted protein [Arabidopsis lyrata su	0.983	0.897	0.633	1e-140
356515549	389	PREDICTED: probable nucleoredoxin 3-like	0.991	0.912	0.620	1e-138
356507842	389	PREDICTED: probable nucleoredoxin 3-like	0.991	0.912	0.617	1e-137
357466557	392	Nucleoredoxin [Medicago truncatula] gi|3	0.991	0.905	0.612	1e-136
449499528	391	PREDICTED: probable nucleoredoxin 3-like	0.960	0.879	0.567	1e-117
449442006	391	PREDICTED: probable nucleoredoxin 3-like	0.960	0.879	0.562	1e-116
242077118	389	hypothetical protein SORBIDRAFT_06g02795	0.916	0.843	0.552	1e-116

>gi|224121244|ref|XP_002330779.1| predicted protein [Populus trichocarpa] gi|222872581|gb|EEF09712.1| predicted protein [Populus trichocarpa]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 257/384 (66%), Positives = 307/384 (79%), Gaps = 32/384 (8%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  + Q+KF++ SDF+ +L+S+G+++LLS +GKVPLSSC  K ICLFFSANWCRPCK F
Sbjct: 1   MAGLDGQAKFVEGSDFVAILSSQGIDYLLSGEGKVPLSSCDCKVICLFFSANWCRPCKAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK----------------------- 97
            PQLV++Y++LR  G +LE++FISFD DE+GF+EHFK                       
Sbjct: 61  APQLVKIYNSLRGTGKKLEIVFISFDRDEDGFKEHFKCMPWLAVPFEVNLHRHLSDIYHV 120

Query: 98  ---------SSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 148
                     SDG  +EED+IGLIED+GA+A+PFTR+R +EL++IDD+KRQGGKL+QLLA
Sbjct: 121 NRIPSCISLGSDGISVEEDMIGLIEDFGAEAFPFTRERFDELRSIDDAKRQGGKLQQLLA 180

Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 208
            EGR+YVLS D RKI VSEL GKTIGLYFGAHWCPP R+FT+QLI+ YNE+ TT + CFE
Sbjct: 181 HEGRNYVLSGDTRKIFVSELVGKTIGLYFGAHWCPPSRAFTTQLIQNYNEIITTNDGCFE 240

Query: 209 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           ++LVSTDRD KEF+ N S MPWLAIPYEDR RQDLCRIFNIKGIPALV+IG DGK I T+
Sbjct: 241 IILVSTDRDLKEFNTNLSNMPWLAIPYEDRTRQDLCRIFNIKGIPALVIIGQDGKIIRTD 300

Query: 269 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 328
           GK MISLYGAKAFPFTESRI EIE  LK+EGDALPR+VKD+KH+H LKLDMAKAYVCDCC
Sbjct: 301 GKAMISLYGAKAFPFTESRITEIEATLKEEGDALPRQVKDIKHQHALKLDMAKAYVCDCC 360

Query: 329 KMRGRFWAFSCDVCNYDLHPKCVE 352
             +G+FWAFSCDVC+YDLHP CVE
Sbjct: 361 NGQGKFWAFSCDVCDYDLHPACVE 384

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081801|emb|CBI20806.3| unnamed protein product [Vitis vinifera]

 Score =  539 bits (1389), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 258/374 (68%), Positives = 295/374 (78%), Gaps = 32/374 (8%)

Query: 11  IDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
           +DS+D +TVLASEG+EFLLS +GKV LSS  GK ICLFFSANWCRPC+TFTPQLVQ+Y++
Sbjct: 11  VDSNDIITVLASEGIEFLLSGEGKVSLSSTEGKMICLFFSANWCRPCRTFTPQLVQIYNS 70

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKSS------------------------------- 99
           L   G  +E+IFISFD DE GF EHFKS                                
Sbjct: 71  LIKTGRMIEIIFISFDRDETGFGEHFKSMPWLAVPFNVDLHRRLSDHYHVDHIPSFIPLG 130

Query: 100 -DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSR 158
            DG  IEED IGLIEDYGA A+PFT +RREELKA+D++KRQGGKLE+LLA EGR++V+S 
Sbjct: 131 LDGKSIEEDAIGLIEDYGASAFPFTSQRREELKAMDNAKRQGGKLEELLANEGRNHVISS 190

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
             R+I VSEL GKTIGLYF AHWCPPCR+FT+QLIE YN+L  T N CFE++ VSTDRDH
Sbjct: 191 SGREILVSELVGKTIGLYFAAHWCPPCRAFTAQLIEAYNKLVATRNQCFEIIFVSTDRDH 250

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
           +EFDL+ S MPWLAIPYED+ARQDLCRIF+IKGIPALVL+G DGKTISTNG+ +IS YGA
Sbjct: 251 QEFDLSLSNMPWLAIPYEDKARQDLCRIFDIKGIPALVLLGSDGKTISTNGRAIISSYGA 310

Query: 279 KAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFS 338
            AFPFTESR  EIE ALK+EGDALPR+VKD+KHEH LKLDMAKAYVCD CK  GRFWAFS
Sbjct: 311 MAFPFTESRTTEIEAALKEEGDALPRQVKDLKHEHILKLDMAKAYVCDSCKKLGRFWAFS 370

Query: 339 CDVCNYDLHPKCVE 352
           CDVC+YDLHP CVE
Sbjct: 371 CDVCDYDLHPTCVE 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18417767|ref|NP_567869.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|42573109|ref|NP_974651.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|75161682|sp|Q8VZQ0.1|NRX3_ARATH RecName: Full=Probable nucleoredoxin 3; Short=AtNrx3 gi|17380978|gb|AAL36301.1| unknown protein [Arabidopsis thaliana] gi|20465609|gb|AAM20287.1| putative receptor kinase [Arabidopsis thaliana] gi|332660480|gb|AEE85880.1| putative nucleoredoxin 3 [Arabidopsis thaliana] gi|332660481|gb|AEE85881.1| putative nucleoredoxin 3 [Arabidopsis thaliana]

 Score =  506 bits (1302), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/385 (62%), Positives = 294/385 (76%), Gaps = 33/385 (8%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSA WCRPCK 
Sbjct: 1   MAVSADYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSAIWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF----------------------- 96
           FTP+L++LY+ L+ RG ELE+IF+SFDHD   F EHF                       
Sbjct: 61  FTPELIKLYENLQNRGEELEIIFVSFDHDMTSFYEHFWCMPWLAVPFNLSLLNKLRDKYG 120

Query: 97  ---------KSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 147
                      SD   + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLL 180

Query: 148 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT    F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSF 240

Query: 208 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
           EV+L+STDRD +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++T
Sbjct: 241 EVILISTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTT 300

Query: 268 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 327
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDF 360

Query: 328 CKMRGRFWAFSCDVCNYDLHPKCVE 352
           CK +GRFWAFSC+ C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCNACDYDLHPTCVE 385

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798848|ref|XP_002867308.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313144|gb|EFH43567.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 244/385 (63%), Positives = 293/385 (76%), Gaps = 33/385 (8%)

Query: 1   MARDND-QSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKT 59
           MA   D Q KF +S D  ++LA+EG+EFLLS  G+VPL    GKTICLFFSANWCRPCK 
Sbjct: 1   MAVSTDYQVKFPESGDLYSILAAEGIEFLLSHSGEVPLEYIHGKTICLFFSANWCRPCKD 60

Query: 60  FTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF----------------------- 96
           FTP+LV+LY+ L+TRG ELE+IF+SFDHD   F EHF                       
Sbjct: 61  FTPELVKLYENLQTRGEELEIIFVSFDHDMTLFYEHFWCMPWLAVPFNLNLLNKLRDKYR 120

Query: 97  ---------KSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLL 147
                      SD   + ED+IGLIEDYG +A+PFT+KR+ ELKAIDDSKR GG+LE+LL
Sbjct: 121 ISRIPSLVPLYSDEISVAEDVIGLIEDYGPEAFPFTKKRKAELKAIDDSKRIGGQLEKLL 180

Query: 148 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
             E R+YV++R+  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL T     F
Sbjct: 181 THESRNYVVARNGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLLDVYNELATRDKGSF 240

Query: 208 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
           EV+LVSTDRD +EF++N + MPWLAIPYEDR RQDLCRIF+IK IPALV+IGP+ KT++T
Sbjct: 241 EVILVSTDRDSREFNINMTNMPWLAIPYEDRTRQDLCRIFSIKLIPALVIIGPEEKTVTT 300

Query: 268 NGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDC 327
           N +EM+SLYG+++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD 
Sbjct: 301 NAREMVSLYGSRSFPFTESRIVELKACLKKEGDSLPRKVKDKKHEHELKLDMAKAYVCDF 360

Query: 328 CKMRGRFWAFSCDVCNYDLHPKCVE 352
           CK +GRFWAFSCD C+YDLHP CVE
Sbjct: 361 CKKQGRFWAFSCDACDYDLHPTCVE 385

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515549|ref|XP_003526462.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 240/387 (62%), Positives = 291/387 (75%), Gaps = 32/387 (8%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++ + D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1   MAGLNFEATYTDNHDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS---------------------- 98
            P+LV+LY+TLR RG  LE+IFISFD DE+GF+EHFK+                      
Sbjct: 61  IPRLVELYETLRKRGINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDVSLHRRLIDRYRI 120

Query: 99  ----------SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 148
                     SDG  IEEDLIG IEDYGADA+PFTRKR EELKAID  KR+   LE+LL 
Sbjct: 121 DRIPSFVPLCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKAIDIRKREEANLEELLG 180

Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 208
            +G  +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK     CFE
Sbjct: 181 HKGCHFLISGDDRKVPISELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKVEKGDCFE 240

Query: 209 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           +VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSSMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300

Query: 269 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 328
           GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHVLKLDMAKAYVCDSC 360

Query: 329 KMRGRFWAFSCDVCNYDLHPKCVEGIN 355
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507842|ref|XP_003522672.1| PREDICTED: probable nucleoredoxin 3-like [Glycine max]

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 239/387 (61%), Positives = 287/387 (74%), Gaps = 32/387 (8%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++   D+ D L + A+EGVEFLLS +GKVP+S C GK ICLFF+ANWCRPC+ F
Sbjct: 1   MAGLNFEATHTDNRDILKIFAAEGVEFLLSCEGKVPVSECNGKIICLFFTANWCRPCRAF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS---------------------- 98
            P+LV+LY+TLR R   LE+IFISFD DE+GF+EHFK+                      
Sbjct: 61  VPRLVELYETLRKRRINLEIIFISFDRDEDGFKEHFKNMPWLAVPFDLNLHRRLIDRYQV 120

Query: 99  ----------SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 148
                     SDG  IEEDLIG IEDYGADA+PFTRKR EELK ID  KR+   LE+LL 
Sbjct: 121 DRIPSFVPSCSDGITIEEDLIGCIEDYGADAFPFTRKRHEELKGIDIRKREEADLEELLG 180

Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 208
            EG  +++S D RK+ +SELAGKTIGLYFGA+W PPC +FT QL + YN LK     CFE
Sbjct: 181 HEGGKFLISGDDRKVPLSELAGKTIGLYFGAYWSPPCCAFTVQLTDAYNNLKAAKGDCFE 240

Query: 209 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           +VL+STDRD +EF++N S MPWLA+PYEDR R DL RIF++KGIPALVLIGPDGK IS N
Sbjct: 241 IVLISTDRDLEEFNVNKSTMPWLAVPYEDRTRHDLRRIFDVKGIPALVLIGPDGKVISVN 300

Query: 269 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 328
           GK M+S YGA+AFPFTESRI ++E AL+KEG+ALP +V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GKLMVSSYGAEAFPFTESRIRDLEAALRKEGEALPPQVEDVKHEHVLKLDMAKAYVCDSC 360

Query: 329 KMRGRFWAFSCDVCNYDLHPKCVEGIN 355
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466557|ref|XP_003603563.1| Nucleoredoxin [Medicago truncatula] gi|355492611|gb|AES73814.1| Nucleoredoxin [Medicago truncatula] gi|388520387|gb|AFK48255.1| unknown [Medicago truncatula]

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 237/387 (61%), Positives = 288/387 (74%), Gaps = 32/387 (8%)

Query: 1   MARDNDQSKFIDSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTF 60
           MA  N ++++ DS D L V A+EGVEFLLS + KVPLS C GK ICLFFSANWCRPC+ F
Sbjct: 1   MAGLNFEAEYPDSFDVLKVFAAEGVEFLLSCERKVPLSDCNGKIICLFFSANWCRPCRLF 60

Query: 61  TPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS---------------------- 98
            P LV LY+TLR RG  +E+IFISFDHDE+GF+EH KS                      
Sbjct: 61  IPHLVGLYETLRKRGINIEIIFISFDHDEDGFKEHIKSMPWLAVPFDAKLNRRLIDRYRV 120

Query: 99  ----------SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLA 148
                     SD   +++++I  IEDYGADA+PFTRKR EELKAID  KR+   L++LL 
Sbjct: 121 DRIPSFIPLCSDALTVDKNMIEWIEDYGADAFPFTRKRHEELKAIDKRKREEVNLDELLT 180

Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 208
             GR++++S D RK+ VSEL GKT+GL+FGA+W PPC +FT QL + YN LK T  HCFE
Sbjct: 181 HGGRNFLISGDDRKVLVSELTGKTVGLFFGAYWSPPCHAFTIQLADAYNNLKDTKGHCFE 240

Query: 209 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           +VLVSTDRD KEF++N + MPWLAIPYEDR R DLCRIF+IK IPALV IGPDGK IS N
Sbjct: 241 IVLVSTDRDLKEFNVNRTSMPWLAIPYEDRTRHDLCRIFDIKKIPALVFIGPDGKVISLN 300

Query: 269 GKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCC 328
           G+ M+S YGA+AFPFTESRI ++E AL+KEG+ALP++V+DVKHEH LKLDMAKAYVCD C
Sbjct: 301 GQFMVSSYGAEAFPFTESRIRDLEAALRKEGEALPQQVEDVKHEHLLKLDMAKAYVCDSC 360

Query: 329 KMRGRFWAFSCDVCNYDLHPKCVEGIN 355
           K +G+FW FSCDVC+YDLHP C+E +N
Sbjct: 361 KKQGKFWTFSCDVCDYDLHPSCLEKVN 387

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449499528|ref|XP_004160840.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/379 (56%), Positives = 264/379 (69%), Gaps = 35/379 (9%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           D  DFL +LA  GV+FLLS + KV    C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11  DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70

Query: 72  RTRGTELEVIFISFDHDENGFEEHFKS--------------------------------S 99
           + RG +LE+IFIS DHD+N FE++FK+                                 
Sbjct: 71  QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130

Query: 100 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 159
           D  L E+DLIG IEDYGA+ +PFTRKR +ELKA+D +KR  G+LE+L    G +YV+S  
Sbjct: 131 DHILKEDDLIGFIEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190

Query: 160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 216
             K  +S+L GKTIGLYFGA+W PP RSFT++L +VY E +  T NH    EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250

Query: 217 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 276
           +  EF LN   MPWLAIPYED  R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310

Query: 277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 336
           GA+AFPFT  RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370

Query: 337 FSCDVCNYDLHPKCVEGIN 355
           FSC VC+YDLHP CV+  N
Sbjct: 371 FSCHVCDYDLHPTCVQLTN 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442006|ref|XP_004138773.1| PREDICTED: probable nucleoredoxin 3-like [Cucumis sativus]

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/379 (56%), Positives = 264/379 (69%), Gaps = 35/379 (9%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           D  DFL +LA  GV+FLLS + KV    C GK ICLFFSANW RPC+TFTPQLVQLY++L
Sbjct: 11  DKDDFLQLLAVLGVDFLLSGEEKVSPILCAGKMICLFFSANWSRPCRTFTPQLVQLYNSL 70

Query: 72  RTRGTELEVIFISFDHDENGFEEHFKS--------------------------------S 99
           + RG +LE+IFIS DHD+N FE++FK+                                 
Sbjct: 71  QKRGEKLEIIFISLDHDKNEFEQYFKTMPWLAVPLNDKLQKQLCGKYHVDCIPSFVPLCG 130

Query: 100 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 159
           D  L E+DLIG +EDYGA+ +PFTRKR +ELKA+D +KR  G+LE+L    G +YV+S  
Sbjct: 131 DHILKEDDLIGFLEDYGAEVFPFTRKRMQELKAMDCAKRVEGRLEELFGNRGYNYVISSH 190

Query: 160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANH--CFEVVLVSTDR 216
             K  +S+L GKTIGLYFGA+W PP RSFT++L +VY E +  T NH    EV+ VSTDR
Sbjct: 191 GGKTQISQLVGKTIGLYFGAYWSPPSRSFTAKLSKVYKEIMDKTENHHSSLEVIFVSTDR 250

Query: 217 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLY 276
           +  EF LN   MPWLAIPYED  R DL RIF++K IP LVLIG DGKT S NG+ ++ LY
Sbjct: 251 NLDEFKLNIMDMPWLAIPYEDETRGDLYRIFDVKAIPTLVLIGADGKTSSENGRGLVCLY 310

Query: 277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWA 336
           GA+AFPFT  RI E+E A+KKEG+ LP +V+D+KHEH LKL+ AKAYVCD CK++GRFWA
Sbjct: 311 GAEAFPFTAERIYELERAVKKEGEDLPSKVEDIKHEHVLKLEFAKAYVCDFCKLQGRFWA 370

Query: 337 FSCDVCNYDLHPKCVEGIN 355
           FSC +C+YDLHP CV+  N
Sbjct: 371 FSCHICDYDLHPTCVQLTN 389

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242077118|ref|XP_002448495.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor] gi|241939678|gb|EES12823.1| hypothetical protein SORBIDRAFT_06g027950 [Sorghum bicolor]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 201/364 (55%), Positives = 252/364 (69%), Gaps = 36/364 (9%)

Query: 24  GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIF 82
           GV+FLL+ +GK VPLSS  GKT CLFFSA+WCRPC++FTP LVQ+Y  LR  G  +E+IF
Sbjct: 18  GVQFLLNNEGKEVPLSSIEGKTTCLFFSAHWCRPCRSFTPNLVQIYTALRNTGKNIEIIF 77

Query: 83  ISFDHDENGFEEHFKS-----------------------------------SDGTLIEED 107
           IS DHDE  F +HFK                                    S G   EED
Sbjct: 78  ISLDHDEASFWDHFKGMSWLALPFDTGLSQKLCAHFGIEHIPALIPLSATPSSGVGFEED 137

Query: 108 LIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSE 167
            + L+++YG DAYPF+ +RR EL+A+DD++R+GGKL++LL  + RDYV+S D  KI +++
Sbjct: 138 AVRLVDEYGEDAYPFSAQRRRELEAMDDARRKGGKLQELLGCKERDYVISADDIKIPIAD 197

Query: 168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI 227
           L GKT+GLYFGAHWCPPC  FT QL EVYNELK      FEV+ +S DR+  EF  + S 
Sbjct: 198 LTGKTVGLYFGAHWCPPCHVFTKQLKEVYNELKILRPESFEVIFISIDRNKGEFQASMSS 257

Query: 228 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESR 287
           MPWLAIPY D ARQ L RIF +KGIP L+++G DGK + T+G+  IS YGA AFPFTESR
Sbjct: 258 MPWLAIPYSDTARQKLTRIFAVKGIPGLLILGLDGKVLKTDGRTAISTYGATAFPFTESR 317

Query: 288 IAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLH 347
           ++E++ AL+KEGD LPR+V D KH H L+LDMAKAYVCD C+ +GR+W FSC  CN+DLH
Sbjct: 318 VSEVDEALRKEGDKLPRQVNDPKHRHVLELDMAKAYVCDECQKKGRYWVFSCKQCNFDLH 377

Query: 348 PKCV 351
           P CV
Sbjct: 378 PSCV 381

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2128141	392	AT4G31240 [Arabidopsis thalian	0.709	0.647	0.712	5.2e-134
TAIR|locus:2195623	578	AT1G60420 [Arabidopsis thalian	0.698	0.432	0.436	3.6e-78
ZFIN|ZDB-GENE-050522-75	418	nxn "nucleoredoxin" [Danio rer	0.469	0.401	0.395	1.1e-33
UNIPROTKB|Q6DKJ4	435	NXN "Nucleoredoxin" [Homo sapi	0.472	0.388	0.348	8.8e-33
RGD|1310489	435	Nxn "nucleoredoxin" [Rattus no	0.472	0.388	0.354	1.7e-32
MGI|MGI:109331	435	Nxn "nucleoredoxin" [Mus muscu	0.472	0.388	0.348	3.1e-32
UNIPROTKB|A6QLU8	435	NXN "Nucleoredoxin" [Bos tauru	0.472	0.388	0.354	5.4e-32
UNIPROTKB|Q6GM16	414	nxn "Nucleoredoxin" [Xenopus l	0.441	0.381	0.385	3.8e-31
UNIPROTKB|I3LEF2	328	NXN "Uncharacterized protein"	0.441	0.481	0.372	1.8e-25
UNIPROTKB|F1NG23	328	NXN "Uncharacterized protein"	0.472	0.515	0.343	5.3e-24

TAIR|locus:2128141 AT4G31240 [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 5.2e-134, Sum P(2) = 5.2e-134
 Identities = 181/254 (71%), Positives = 221/254 (87%)

Query:    99 SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSR 158
             SD   + ED+IGLIEDYG++A+PFT+KR+EELKAIDDSKR GG+LE+LL  E R+YV++R
Sbjct:   132 SDEISVAEDVIGLIEDYGSEAFPFTKKRKEELKAIDDSKRLGGQLEKLLTHESRNYVVAR 191

Query:   159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
             +  K+ VS+L GKTIGLYFGAHWCPP RSFTSQL++VYNEL TT    FEV+L+STDRD 
Sbjct:   192 NGSKVLVSKLVGKTIGLYFGAHWCPPFRSFTSQLVDVYNELATTDKGSFEVILISTDRDS 251

Query:   219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
             +EF++N + MPWLAIPYEDR RQDLCRIFN+K IPALV+IGP+ KT++TN +EM+SLYG+
Sbjct:   252 REFNINMTNMPWLAIPYEDRTRQDLCRIFNVKLIPALVIIGPEEKTVTTNAREMVSLYGS 311

Query:   279 KAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYVCDCCKMRGRFWAFS 338
             ++FPFTESRI E++  LKKEGD+LPR+VKD KHEHELKLDMAKAYVCD CK +GRFWAFS
Sbjct:   312 RSFPFTESRIVELKACLKKEGDSLPRKVKDNKHEHELKLDMAKAYVCDFCKKQGRFWAFS 371

Query:   339 CDVCNYDLHPKCVE 352
             C+ C+YDLHP CVE
Sbjct:   372 CNACDYDLHPTCVE 385

GO:0005634 "nucleus" evidence=ISM

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2195623 AT1G60420 [Arabidopsis thaliana (taxid:3702)]

 Score = 616 (221.9 bits), Expect = 3.6e-78, Sum P(2) = 3.6e-78
 Identities = 110/252 (43%), Positives = 162/252 (64%)

Query:   100 DGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRD 159
             DG     ++   I+DYG  AYPFT ++ +ELK ++ +K +   LE LL     +YVL +D
Sbjct:   293 DGKTRHSNVAEAIDDYGVLAYPFTPEKFQELKELEKAKVEAQTLESLLVSGDLNYVLGKD 352

Query:   160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK 219
               K+ VS+L GKTI +YF AHWCPPCR+FT +L+EVY ++K   N  FE++ +S+DRD +
Sbjct:   353 GAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKER-NEAFELIFISSDRDQE 411

Query:   220 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 279
              FD  +S MPWLA+P+ D  +  L + F + GIP L  +GP G+T++   ++++  +GA 
Sbjct:   412 SFDEYYSQMPWLALPFGDPRKASLAKTFKVGGIPMLAALGPTGQTVTKEARDLVVAHGAD 471

Query:   280 AFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFWAFS 338
             A+PFTE R+ EIE    +     P++VK V HE HEL+L   + Y CD C+  G  W++ 
Sbjct:   472 AYPFTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYH 531

Query:   339 CDVCNYDLHPKC 350
             CD C++DLH KC
Sbjct:   532 CDECDFDLHAKC 543

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009860 "pollen tube growth" evidence=IMP

GO:0010183 "pollen tube guidance" evidence=IMP

GO:0080092 "regulation of pollen tube growth" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-050522-75 nxn "nucleoredoxin" [Danio rerio (taxid:7955)]

 Score = 298 (110.0 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 68/172 (39%), Positives = 98/172 (56%)

Query:   156 LSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             L R++R+ T S  L G  +G+YF AHWCPPCRS T  L+E Y ++K T    FE+V VS 
Sbjct:   161 LLRNNRQTTDSTALEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQK-FEIVFVSA 219

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+L+  +G  I+  G+ E+
Sbjct:   220 DRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILLDTEGHMITRQGRVEI 279

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++      FP+    + E+  +   +    P  V  V  E E +LD AK  +
Sbjct:   280 LNDPDCGLFPWHPRPVLELSESNAVQLHEGPCLVLFVDAEEEGELDPAKELI 331

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|Q6DKJ4 NXN "Nucleoredoxin" [Homo sapiens (taxid:9606)]

 Score = 295 (108.9 bits), Expect = 8.8e-33, Sum P(3) = 8.8e-33
 Identities = 60/172 (34%), Positives = 98/172 (56%)

Query:   155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K    + FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQN-FEIIFVSA 236

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEVITRQGRVEV 296

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAAQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

RGD|1310489 Nxn "nucleoredoxin" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 1.7e-32, Sum P(3) = 1.7e-32
 Identities = 61/172 (35%), Positives = 98/172 (56%)

Query:   155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISO

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0072358 "cardiovascular system development" evidence=ISO

MGI|MGI:109331 Nxn "nucleoredoxin" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 3.1e-32, Sum P(3) = 3.1e-32
 Identities = 60/172 (34%), Positives = 97/172 (56%)

Query:   155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K      FE++ VS 
Sbjct:   178 LLRNNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQE-FEIIFVSA 236

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR  + F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCREFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IMP

GO:0031397 "negative regulation of protein ubiquitination" evidence=IMP

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0072358 "cardiovascular system development" evidence=IMP

UNIPROTKB|A6QLU8 NXN "Nucleoredoxin" [Bos taurus (taxid:9913)]

 Score = 291 (107.5 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
 Identities = 61/172 (35%), Positives = 97/172 (56%)

Query:   155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:   178 LLRSNGQSLESSSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSA 236

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR    F    S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+
Sbjct:   237 DRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEV 296

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   297 LNDEDCRGFPWHPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 348

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0047134 "protein-disulfide reductase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

UNIPROTKB|Q6GM16 nxn "Nucleoredoxin" [Xenopus laevis (taxid:8355)]

 Score = 290 (107.1 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 62/161 (38%), Positives = 92/161 (57%)

Query:   166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 225
             S L G  +G+YF A+WCPPCRS T  L+E Y ++K +    FE+VLVS DR  + F    
Sbjct:   168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQK-FEIVLVSADRSEESFKQYF 226

Query:   226 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 283
             S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E++     K FP+
Sbjct:   227 SEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDPKGEVITRQGRVEVLRDIDCKEFPW 286

Query:   284 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
                 + E+      + +  P  V  V  E E + + AK  +
Sbjct:   287 HPKPVVELTELNAVQLNEGPCLVLFVDSEDEGESEAAKQLI 327

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=ISS

GO:0031397 "negative regulation of protein ubiquitination" evidence=ISS

GO:0072358 "cardiovascular system development" evidence=ISS

UNIPROTKB|I3LEF2 NXN "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 60/161 (37%), Positives = 92/161 (57%)

Query:   166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH 225
             S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS DR    F    
Sbjct:    82 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEIIFVSADRSEDSFKQYF 140

Query:   226 SIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EMISLYGAKAFPF 283
             S MPWLA+PY D AR+  L R++ I+GIP L+++ P G+ I+  G+ E+++    + FP+
Sbjct:   141 SEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEVITRQGRVEVLNDEDCRGFPW 200

Query:   284 TESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
                 + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   201 HPKPVLELSDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241

GO:0072358 "cardiovascular system development" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

UNIPROTKB|F1NG23 NXN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 59/172 (34%), Positives = 96/172 (55%)

Query:   155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
             +L  + + +  S L G  +G+YF AHWCPPCRS T  L+E Y ++K  A   FE++ VS 
Sbjct:    71 LLRNNGQTLDSSALEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKE-AGQKFEILFVSA 129

Query:   215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPDGKTISTNGK-EM 272
             DR    F    S MPW+A+PY D AR+  L R++ I+GIP L+++   G+ I+  G+ E+
Sbjct:   130 DRSEDSFKQYFSEMPWVAVPYADEARRSRLNRLYGIQGIPTLIVLDSQGEVITRQGRVEV 189

Query:   273 ISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHELKLDMAKAYV 324
             ++    + FP+    + E+  +   + +  P  V  V  E + + + AK  +
Sbjct:   190 LNDIECREFPWHPKPVLELTDSNAVQLNEGPCLVLFVDSEDDGESEAAKQLI 241

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IEA

GO:0031397 "negative regulation of protein ubiquitination" evidence=IEA

GO:0072358 "cardiovascular system development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VZQ0	NRX3_ARATH	1, ., 8, ., 1, ., 8	0.6259	0.9832	0.8979	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	9e-66
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	3e-53
cd03009	131	cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-l	1e-32
cd02964	132	cd02964, TryX_like_family, Tryparedoxin (TryX)-lik	7e-27
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	2e-23
pfam13905	94	pfam13905, Thioredoxin_8, Thioredoxin-like	5e-13
cd03008	146	cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like	1e-12
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	4e-11
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	4e-09
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	8e-07
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	5e-06
PRK03147	173	PRK03147, PRK03147, thiol-disulfide oxidoreductase	1e-05
cd02966	116	cd02966, TlpA_like_family, TlpA-like family; compo	3e-05
cd03011	123	cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family,	6e-05
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	1e-04
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	4e-04
COG0526	127	COG0526, TrxA, Thiol-disulfide isomerase and thior	6e-04
pfam13098	105	pfam13098, Thioredoxin_2, Thioredoxin-like domain	0.001
pfam03107	30	pfam03107, C1_2, C1 domain	0.001
cd02947	93	cd02947, TRX_family, TRX family; composed of two g	0.003

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  204 bits (520), Expect = 9e-66
 Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 2/132 (1%)

Query: 153 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 212
           D++L  D  K+ VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK +    FE+V +
Sbjct: 1   DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKES-GKNFEIVFI 59

Query: 213 STDRDHKEFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGKE 271
           S DRD + F+   S MPWLA+P+ DR  R  L R F I+GIP L+++  DG+ ++T+ +E
Sbjct: 60  SWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARE 119

Query: 272 MISLYGAKAFPF 283
           ++  YGA AFPF
Sbjct: 120 LVLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  172 bits (437), Expect = 3e-53
 Identities = 58/134 (43%), Positives = 84/134 (62%), Gaps = 5/134 (3%)

Query: 153 DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 212
            ++L  +     VS L GKT+GLYF A WCPPCR+FT +L+E Y +LK      FE+V V
Sbjct: 1   LFLLDGEGVVP-VSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEE-GKNFEIVFV 58

Query: 213 STDRDHKEFDLN-HSIMPWLAIPYEDRA-RQDLCRIFNIKGIPALVLIGPDGKTISTNGK 270
           S DR  + F+     + PWLA+P+ED   R+ L + F ++GIP LV++ PDG  ++TN +
Sbjct: 59  SRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNAR 118

Query: 271 EMIS-LYGAKAFPF 283
           + +    GA AFP+
Sbjct: 119 DEVEEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

 Score =  118 bits (298), Expect = 1e-32
 Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 34/131 (25%)

Query: 26  EFLLSRQG-KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
           +FLL   G KVP+SS  GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+  G   E++FIS
Sbjct: 1   DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFIS 60

Query: 85  FDHDENGFEEHFK---------------------------------SSDGTLIEEDLIGL 111
           +D DE  F ++F                                   +DG ++  D   L
Sbjct: 61  WDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDAREL 120

Query: 112 IEDYGADAYPF 122
           + +YGADA+PF
Sbjct: 121 VLEYGADAFPF 131

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the vertebrate NRX by about 100-200 amino acids, is a nuclear protein containing a redox inactive TRX-like domain between two redox active TRX domains. Both vertebrate and plant NRXs show thiol oxidoreductase activity in vitro. Their localization in the nucleus suggests a role in the redox regulation of nuclear proteins such as transcription factors. Length = 131

>gnl|CDD|239262 cd02964, TryX_like_family, Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

 Score =  103 bits (258), Expect = 7e-27
 Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 35/132 (26%)

Query: 26  EFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF 85
            FLL  +G VP+S+  GKT+ L+FSA+WC PC+ FTP+LV+ Y+ L+  G   E++F+S 
Sbjct: 1   LFLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSR 60

Query: 86  DHDENGFEEHFKS----------------------------------SDGTLIEEDLIGL 111
           D  E  F E+F                                     DG ++  +    
Sbjct: 61  DRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDE 120

Query: 112 I-EDYGADAYPF 122
           + ED GA A+P+
Sbjct: 121 VEEDPGACAFPW 132

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX. Length = 132

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 92.4 bits (230), Expect = 2e-23
 Identities = 43/96 (44%), Positives = 60/96 (62%), Gaps = 5/96 (5%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 227
           GK + LYF A WCPPCR+FT +L E+Y +LK       E+V VS DRD +E+   L    
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKLK-KPK--VEIVYVSLDRDEEEWKKYLKKMP 57

Query: 228 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
             WL +P+ D+ R +L R++ +K IP LVL+  DG+
Sbjct: 58  KDWLNVPFGDKERNELLRLYGVKAIPTLVLLDKDGR 93

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|222448 pfam13905, Thioredoxin_8, Thioredoxin-like

 Score = 63.9 bits (156), Expect = 5e-13
 Identities = 27/85 (31%), Positives = 50/85 (58%), Gaps = 7/85 (8%)

Query: 42  GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG 101
           GK + L+F A+WC PC+ FTP+L +LY+ L  +  ++E++++S D DE  ++++ K    
Sbjct: 1   GKVVLLYFWASWCPPCRAFTPELKELYEKL--KKPKVEIVYVSLDRDEEEWKKYLKKMPK 58

Query: 102 TLI-----EEDLIGLIEDYGADAYP 121
             +     +++   L+  YG  A P
Sbjct: 59  DWLNVPFGDKERNELLRLYGVKAIP 83

Thioredoxins are small enzymes that participate in redox reactions, via the reversible oxidation of an active centre disulfide bond. Length = 94

>gnl|CDD|239306 cd03008, TryX_like_RdCVF, Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

 Score = 64.1 bits (156), Expect = 1e-12
 Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 6/123 (4%)

Query: 165 VSELAGKTIGLYFGAHWCPPCRSFTSQL----IEVYNELKTTANHCFEVVLVSTDRDHKE 220
           V+ L  + + L+FGA   P C+ F  +L    + + +E     +    +V VS D+  ++
Sbjct: 20  VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQ 79

Query: 221 FDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
            +     MP  WL +P+ED  R++L   F+++ +P +V++ PDG  ++ N  + I   G 
Sbjct: 80  QESFLKDMPKKWLFLPFEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGP 139

Query: 279 KAF 281
             F
Sbjct: 140 ACF 142

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity. Length = 146

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 59.2 bits (144), Expect = 4e-11
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 15/113 (13%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D + +++S+L GK + + F A WCPPCR+   +L  +  E K       EVV V+ D D 
Sbjct: 8   DGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG---VEVVGVNVDDDD 64

Query: 219 KEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGKTI 265
                  ++  +L    I +    D    +L + + ++G+P   LI  DG+  
Sbjct: 65  PA-----AVKAFLKKYGITFPVLLD-PDGELAKAYGVRGLPTTFLIDRDGRIR 111

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 18/113 (15%)

Query: 161 RKITVSELAGKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--D 217
           +++++S+  GK + L+F    + P C +    L ++Y E K       EV+ VS D    
Sbjct: 16  KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFK---KLGVEVLGVSVDSPES 72

Query: 218 HKEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGK 263
           HK+F     +  P L+ P       ++ + + +        +    +I PDGK
Sbjct: 73  HKKFAEKLGLPFPLLSDP-----DGEVAKAYGVLNEEEGLALRTTFVIDPDGK 120

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 20/96 (20%), Positives = 41/96 (42%), Gaps = 11/96 (11%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 229
           GK + + F    CP C+    +L++  +  +   ++ F V+ V+ D              
Sbjct: 5   GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDN-FVVIYVNVDDS----------KE 53

Query: 230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI 265
                 E  + ++L R + ++G P +V +  DGK +
Sbjct: 54  VTDFDGETLSEKELARKYGVRGTPTIVFLDGDGKEV 89

Length = 105

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 44.1 bits (105), Expect = 5e-06
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 43/122 (35%)

Query: 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 234
           + F A WC PC++       V  EL         V  V  D D                 
Sbjct: 15  VDFWAPWCGPCKAIA----PVLEELAEEYPK---VKFVKVDVD----------------- 50

Query: 235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA 294
                  +L   + ++ IP  +           NGKE+  + GA           E+E  
Sbjct: 51  ----ENPELAEEYGVRSIPTFLFF--------KNGKEVDRVVGADPK-------EELEEF 91

Query: 295 LK 296
           L+
Sbjct: 92  LE 93

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

>gnl|CDD|179545 PRK03147, PRK03147, thiol-disulfide oxidoreductase; Provisional

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 23/136 (16%)

Query: 153 DYVLSR-DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVL 211
           ++VL+  + +KI + +L GK + L F   WC PC      + E+Y + K       E++ 
Sbjct: 43  NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYK---EKGVEIIA 99

Query: 212 VSTDRDH-------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 264
           V+ D            + L   +    AI   D+ RQ +   + +  +P   LI  DGK 
Sbjct: 100 VNVDETELAVKNFVNRYGLTFPV----AI---DKGRQVI-DAYGVGPLPTTFLIDKDGKV 151

Query: 265 IS----TNGKEMISLY 276
           +        +E +  Y
Sbjct: 152 VKVITGEMTEEQLEEY 167

Length = 173

>gnl|CDD|239264 cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 7/93 (7%)

Query: 35  VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG--- 91
           V LS   GK + + F A+WC PC+   P+L  L    +  G  +EV+ ++ D D+     
Sbjct: 12  VSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVK 69

Query: 92  -FEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT 123
            F + +  +   L++ D   L + YG    P T
Sbjct: 70  AFLKKYGITFPVLLDPDG-ELAKAYGVRGLPTT 101

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases. Length = 116

>gnl|CDD|239309 cd03011, TlpA_like_ScsD_MtbDsbE, TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 16/107 (14%)

Query: 167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS----TDRDHKEFD 222
            L+GK + +YF A WCP CR FTS  +         A   + VV V+     D     F 
Sbjct: 17  SLSGKPVLVYFWATWCPVCR-FTSPTVNQL------AAD-YPVVSVALRSGDDGAVARF- 67

Query: 223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 269
           +      +  I   D     +   + +   PA+V++ P G    T G
Sbjct: 68  MQKKGYGFPVINDPD---GVISARWGVSVTPAIVIVDPGGIVFVTTG 111

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c. Length = 123

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 41.0 bits (95), Expect = 1e-04
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 32/127 (25%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D   +++SEL GK + + F A WCPPCR+    L E+  E         EVV V+ D ++
Sbjct: 21  DGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEY----GGDVEVVAVNVDDEN 76

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
            +          LA  +             ++ IP L+L          +GKE+  L G 
Sbjct: 77  PD----------LAAEFGV----------AVRSIPTLLLFK--------DGKEVDRLVGG 108

Query: 279 KAFPFTE 285
           K  P   
Sbjct: 109 KVLPKEA 115

Length = 127

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)

Query: 33 GKVPLSSCGGKTICLFF-SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
           +V LS   GK + LFF   ++   C T  P L  LY+  +  G   EV+ +S D
Sbjct: 16 KEVSLSDYKGKWVVLFFYPKDFTPVCTTELPALADLYEEFKKLGV--EVLGVSVD 68

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|223600 COG0526, TrxA, Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

 Score = 39.1 bits (90), Expect = 6e-04
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 1/119 (0%)

Query: 16  FLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG 75
           FL    +    F       + LS   GK + + F A WC PC+   P L +L +      
Sbjct: 6   FLLGELATAASFEELDGAPLSLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDV 65

Query: 76  TELEVIFISFDHDENGFEEHFKSSDGTLIE-EDLIGLIEDYGADAYPFTRKRREELKAI 133
             + V     + D          S  TL+  +D   +    G    P         + +
Sbjct: 66  EVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVGGKVLPKEALIDALGELL 124

Length = 127

>gnl|CDD|221921 pfam13098, Thioredoxin_2, Thioredoxin-like domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 42  GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG 101
           GK + + F+   C  CK    +L++  D          VI+++ D       +     DG
Sbjct: 5   GKPVLVVFTDPDCPYCKKLHKELLKDPDVQEYLKDNFVVIYVNVDDS-----KEVTDFDG 59

Query: 102 TLIEEDLIGLIEDYGADAYP 121
             + E    L   YG    P
Sbjct: 60  ETLSE--KELARKYGVRGTP 77

Length = 105

>gnl|CDD|202539 pfam03107, C1_2, C1 domain

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 8/30 (26%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 323 YVCDCCKMR-GRFWAFSCDVCNYDLHPKCV 351
           + C  C+ +   F+ ++C  C + LH +C 
Sbjct: 1   FWCSVCRRKIDGFYFYTCKKCCFTLHVRCA 30

This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in pfam00130, therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol (A Bateman pers. obs.). This family are found in plant proteins. Length = 30

>gnl|CDD|239245 cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
           K + + F A WC PCK   P L +L           +V F+  D DEN
Sbjct: 10 AKPVVVDFWAPWCGPCKAIAPVLEEL------AEEYPKVKFVKVDVDEN 52

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins. Length = 93

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.92
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.91
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.89
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.84
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.82
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.82
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.82
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.8
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.79
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.79
PTZ00102	477	disulphide isomerase; Provisional	99.78
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.78
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.78
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.77
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.77
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.77
PLN02412	167	probable glutathione peroxidase	99.77
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.76
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.76
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	99.76
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.76
PTZ00056	199	glutathione peroxidase; Provisional	99.76
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.75
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.74
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.74
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.73
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.73
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.73
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.73
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.72
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.72
PTZ00256	183	glutathione peroxidase; Provisional	99.72
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.71
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.7
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	99.7
PRK13190	202	putative peroxiredoxin; Provisional	99.69
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.68
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.68
PRK13599	215	putative peroxiredoxin; Provisional	99.67
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.67
PRK15000	200	peroxidase; Provisional	99.67
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.66
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	99.66
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.66
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.65
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.64
PRK13191	215	putative peroxiredoxin; Provisional	99.63
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.63
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.63
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.63
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	99.62
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.62
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	99.6
PRK13189	222	peroxiredoxin; Provisional	99.59
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.57
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.57
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.55
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	99.55
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.53
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	99.53
PHA02278	103	thioredoxin-like protein	99.51
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	99.51
KOG2501	157	consensus Thioredoxin, nucleoredoxin and related p	99.51
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.5
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.49
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.47
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.47
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.46
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.43
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	99.43
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	99.43
PRK09381	109	trxA thioredoxin; Provisional	99.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.42
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.41
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.41
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	99.4
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	99.4
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.38
PRK10996	139	thioredoxin 2; Provisional	99.38
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	99.38
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	99.38
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	99.37
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.37
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	99.37
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	99.37
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	99.37
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	99.37
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.35
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	99.35
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.35
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.34
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	99.34
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	99.34
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.33
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	99.33
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.33
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.33
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	99.33
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	99.32
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.32
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	99.32
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	99.32
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	99.32
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	99.31
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.31
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	99.3
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.3
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.3
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.29
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	99.28
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.28
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.27
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	99.27
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	99.27
PHA02278	103	thioredoxin-like protein	99.26
PTZ00056	199	glutathione peroxidase; Provisional	99.26
PLN02412	167	probable glutathione peroxidase	99.26
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	99.26
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	99.26
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	99.24
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	99.23
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	99.23
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	99.23
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	99.22
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	99.22
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	99.22
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	99.22
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	99.22
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	99.22
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	99.21
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.21
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	99.21
PTZ00051	98	thioredoxin; Provisional	99.21
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	99.21
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	99.2
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	99.19
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	99.18
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	99.18
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	99.18
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	99.17
KOG0907	106	consensus Thioredoxin [Posttranslational modificat	99.17
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	99.16
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	99.15
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	99.15
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	99.15
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	99.14
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	99.14
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	99.14
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	99.14
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	99.13
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	99.13
KOG0190	493	consensus Protein disulfide isomerase (prolyl 4-hy	99.11
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	99.11
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	99.11
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	99.11
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	99.11
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	99.09
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.09
PTZ00062	204	glutaredoxin; Provisional	99.09
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.08
PTZ00256	183	glutathione peroxidase; Provisional	99.08
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	99.07
KOG4277	468	consensus Uncharacterized conserved protein, conta	99.06
COG3118	304	Thioredoxin domain-containing protein [Posttransla	99.06
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	99.04
PTZ00062	204	glutaredoxin; Provisional	99.03
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.03
PRK09381	109	trxA thioredoxin; Provisional	99.03
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.03
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.03
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	99.02
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	99.02
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.02
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	99.01
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.01
PRK10606	183	btuE putative glutathione peroxidase; Provisional	99.0
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.0
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	99.0
PRK13728	181	conjugal transfer protein TrbB; Provisional	99.0
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	99.0
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.99
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	98.99
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.99
PRK10996	139	thioredoxin 2; Provisional	98.99
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	98.97
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	98.96
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	98.95
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.94
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.94
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.93
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	98.93
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	98.93
KOG0191	383	consensus Thioredoxin/protein disulfide isomerase	98.92
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	98.92
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	98.92
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.92
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	98.91
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	98.91
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	98.9
KOG0908	288	consensus Thioredoxin-like protein [Posttranslatio	98.9
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	98.89
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	98.89
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	98.89
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	98.88
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	98.88
PTZ00051	98	thioredoxin; Provisional	98.87
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	98.87
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	98.87
PLN02309	457	5'-adenylylsulfate reductase	98.87
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	98.85
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	98.85
PRK13190	202	putative peroxiredoxin; Provisional	98.85
PRK13599	215	putative peroxiredoxin; Provisional	98.84
PTZ00102	477	disulphide isomerase; Provisional	98.84
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	98.84
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.84
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	98.84
PLN02309	457	5'-adenylylsulfate reductase	98.83
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	98.82
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.81
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	98.8
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	98.8
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	98.8
PRK15000	200	peroxidase; Provisional	98.8
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.78
PHA02125	75	thioredoxin-like protein	98.77
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.77
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	98.75
KOG4277	468	consensus Uncharacterized conserved protein, conta	98.74
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.74
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.73
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	98.73
PRK13191	215	putative peroxiredoxin; Provisional	98.73
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.72
PTZ00137	261	2-Cys peroxiredoxin; Provisional	98.72
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	98.71
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	98.7
cd03007	116	PDI_a_ERp29_N PDIa family, endoplasmic reticulum p	98.7
PTZ00253	199	tryparedoxin peroxidase; Provisional	98.68
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	98.67
KOG0912	375	consensus Thiol-disulfide isomerase and thioredoxi	98.66
PRK13189	222	peroxiredoxin; Provisional	98.64
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.64
PF07649	30	C1_3: C1-like domain; InterPro: IPR011424 This sho	98.63
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	98.6
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	98.6
PHA02125	75	thioredoxin-like protein	98.59
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	98.59
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	98.57
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	98.55
PF13728	215	TraF: F plasmid transfer operon protein	98.55
cd02947	93	TRX_family TRX family; composed of two groups: Gro	98.5
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	98.48
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	98.48
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	98.47
smart00594	122	UAS UAS domain.	98.47
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	98.44
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	98.43
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	98.43
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	98.42
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	98.41
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.4
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.39
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	98.38
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.36
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	98.32
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.31
PF03107	30	C1_2: C1 domain; InterPro: IPR004146 This short do	98.24
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	98.21
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	98.18
KOG1731	606	consensus FAD-dependent sulfhydryl oxidase/quiesci	98.16
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	98.14
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	98.14
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.13
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	98.09
KOG0855	211	consensus Alkyl hydroperoxide reductase, thiol spe	98.05
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	98.04
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	97.97
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	97.95
COG2143	182	Thioredoxin-related protein [Posttranslational mod	97.95
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	97.94
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	97.89
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	97.89
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	97.87
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.85
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	97.83
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	97.83
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	97.79
smart00594	122	UAS UAS domain.	97.79
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	97.77
cd02340	43	ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger pre	97.72
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	97.71
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	97.71
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.69
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.68
PF00255	108	GSHPx: Glutathione peroxidase; InterPro: IPR000889	97.66
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	97.65
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	97.58
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	97.56
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.49
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	97.35
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	97.32
cd02339	45	ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger pre	97.31
cd02342	43	ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger pre	97.29
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	97.26
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	97.25
KOG3425	128	consensus Uncharacterized conserved protein [Funct	97.22
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	97.21
PRK11200	85	grxA glutaredoxin 1; Provisional	97.2
PF13728	215	TraF: F plasmid transfer operon protein	97.14
COG4232	569	Thiol:disulfide interchange protein [Posttranslati	97.13
cd02344	45	ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present	97.12
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.06
cd02343	48	ZZ_EF Zinc finger, ZZ type. Zinc finger present in	97.05
KOG0852	196	consensus Alkyl hydroperoxide reductase, thiol spe	96.98
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.96
cd02341	48	ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present	96.95
cd02334	49	ZZ_dystrophin Zinc finger, ZZ type. Zinc finger pr	96.93
KOG1651	171	consensus Glutathione peroxidase [Posttranslationa	96.92
cd02249	46	ZZ Zinc finger, ZZ type. Zinc finger present in dy	96.91
PF03190	163	Thioredox_DsbH: Protein of unknown function, DUF25	96.79
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	96.77
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	96.75
KOG0914	265	consensus Thioredoxin-like protein [Posttranslatio	96.72
smart00291	44	ZnF_ZZ Zinc-binding domain, present in Dystrophin,	96.71
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	96.68
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	96.64
PF00569	46	ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc	96.59
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	96.55
cd02345	49	ZZ_dah Zinc finger, ZZ type. Zinc finger present i	96.36
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.35
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	96.33
cd02338	49	ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger pre	96.32
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	96.31
cd02335	49	ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present	96.28
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	96.27
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	96.26
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	96.16
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	96.11
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	96.06
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	96.04
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	96.03
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	96.03
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	96.01
PF13848	184	Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_	96.01
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	96.0
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	95.99
KOG3425	128	consensus Uncharacterized conserved protein [Funct	95.91
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	95.71
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	95.65
COG1331	667	Highly conserved protein containing a thioredoxin	95.59
PRK11200	85	grxA glutaredoxin 1; Provisional	95.5
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	95.46
KOG4582	278	consensus Uncharacterized conserved protein, conta	95.41
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	95.4
cd02337	41	ZZ_CBP Zinc finger, ZZ type. Zinc finger present i	95.39
PHA03050	108	glutaredoxin; Provisional	95.37
PF05988	211	DUF899: Bacterial protein of unknown function (DUF	95.34
cd02991	116	UAS_ETEA UAS family, ETEA subfamily; composed of p	95.2
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	95.17
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	95.15
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	95.11
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	95.11
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	95.09
PRK10638	83	glutaredoxin 3; Provisional	95.02
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	94.95
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.88
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	94.79
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	94.77
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	94.7
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.68
PRK10329	81	glutaredoxin-like protein; Provisional	94.66
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	94.63
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	94.59
COG2143	182	Thioredoxin-related protein [Posttranslational mod	94.49
KOG0913	248	consensus Thiol-disulfide isomerase and thioredoxi	94.26
cd03019	178	DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a m	94.11
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	93.84
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	93.73
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	93.68
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	93.47
KOG1672	211	consensus ATP binding protein [Posttranslational m	93.03
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	92.82
PRK10329	81	glutaredoxin-like protein; Provisional	92.49
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	92.49
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	92.08
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	91.62
cd00029	50	C1 Protein kinase C conserved region 1 (C1) . Cyst	91.58
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	91.58
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	91.55
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	91.53
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	91.52
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	91.47
KOG0854	224	consensus Alkyl hydroperoxide reductase, thiol spe	91.38
PRK10824	115	glutaredoxin-4; Provisional	91.09
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	90.81
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	90.65
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	90.62
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	90.62
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	90.18
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	90.08
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	90.04
cd02336	45	ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present	89.98
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	89.88
KOG2603	331	consensus Oligosaccharyltransferase, gamma subunit	89.61
cd02983	130	P5_C P5 family, C-terminal redox inactive TRX-like	89.33
PF02966	133	DIM1: Mitosis protein DIM1; InterPro: IPR004123 Th	88.85
smart00109	49	C1 Protein kinase C conserved region 1 (C1) domain	88.71
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	88.56
PHA03050	108	glutaredoxin; Provisional	88.4
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	87.88
PF04592	238	SelP_N: Selenoprotein P, N terminal region; InterP	87.73
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	87.69
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	87.15
PRK10954	207	periplasmic protein disulfide isomerase I; Provisi	86.32
PRK10638	83	glutaredoxin 3; Provisional	86.19
KOG3414	142	consensus Component of the U4/U6.U5 snRNP/mitosis	85.54
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	85.02
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	84.7
PF07449	107	HyaE: Hydrogenase-1 expression protein HyaE; Inter	84.63
cd03073	111	PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 s	84.16
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	83.22
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	83.2
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	82.83
PF02114	265	Phosducin: Phosducin; InterPro: IPR024253 The oute	82.47
COG4312	247	Uncharacterized protein conserved in bacteria [Fun	81.95
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	81.44
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	81.29

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.92  E-value=1.8e-24  Score=173.60  Aligned_cols=129  Identities=49%  Similarity=1.009  Sum_probs=118.0

Q ss_pred             ceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccc
Q 018266          154 YVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAI  233 (358)
Q Consensus       154 f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~  233 (358)
                      |..+.+|+.+++++++||+|+|+||++||++|+.++|.|.++++++++ .+.+++|++|++|.+.+.+.+++..++|..+
T Consensus         2 ~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~-~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~   80 (131)
T cd03009           2 FLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-SGKNFEIVFISWDRDEESFNDYFSKMPWLAV   80 (131)
T ss_pred             cccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHh-cCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence            555889999999999999999999999999999999999999999975 2347999999999999999999999999888


Q ss_pred             ccCc-hhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCC
Q 018266          234 PYED-RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPF  283 (358)
Q Consensus       234 ~~~~-~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~  283 (358)
                      |+.. +....+++.|++.++|+++|||++|+++.++++.++..+|+.+|||
T Consensus        81 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~  131 (131)
T cd03009          81 PFSDRERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF  131 (131)
T ss_pred             ccCCHHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence            8765 5567899999999999999999999999999999999999999996

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.91  E-value=2.2e-24  Score=173.43  Aligned_cols=120  Identities=28%  Similarity=0.561  Sum_probs=106.2

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcc----cCCceEEEEEeCCCCHHHHHHhhhcCC--ccccc
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT----ANHCFEVVLVSTDRDHKEFDLNHSIMP--WLAIP  234 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~----~~~~~~vv~v~~d~~~~~~~~~~~~~~--~~~~~  234 (358)
                      +.+++++++||+|+|+|||+||++|+.++|.|.++++++++.    ...+++||+|+.|.+.+.+.+++..++  |+.+|
T Consensus        16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p   95 (146)
T cd03008          16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLP   95 (146)
T ss_pred             ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeec
Confidence            456788999999999999999999999999999999988752    124799999999999888999999887  88888


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCC
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKA  280 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~  280 (358)
                      +..+....+.++|++.++|+++|||++|+|++++|+..+..+|..+
T Consensus        96 ~~~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~  141 (146)
T cd03008          96 FEDEFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPAC  141 (146)
T ss_pred             ccchHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHH
Confidence            8777667899999999999999999999999999999888888654

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.89  E-value=8.8e-23  Score=163.94  Aligned_cols=122  Identities=48%  Similarity=0.958  Sum_probs=108.5

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC-CccccccCc-h
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM-PWLAIPYED-R  238 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~-~~~~~~~~~-~  238 (358)
                      +++++++++||+++|+||++||++|+.++|.|+++++++++ ...+++|++|++|.+.+.+.+++.++ +|..+++.+ .
T Consensus         8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~-~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~   86 (132)
T cd02964           8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKE-EGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEE   86 (132)
T ss_pred             ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhh-cCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHH
Confidence            58999999999999999999999999999999999999985 12379999999999988999999988 688888765 3


Q ss_pred             hHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhh-cCCCCCCC
Q 018266          239 ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL-YGAKAFPF  283 (358)
Q Consensus       239 ~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~-~g~~~~p~  283 (358)
                      ....+.+.|++.++|+++|||++|+|+++++...+.. +|+.+|||
T Consensus        87 ~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~  132 (132)
T cd02964          87 LRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW  132 (132)
T ss_pred             HHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence            4567888999999999999999999999998877775 89999986

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.84  E-value=2.2e-20  Score=148.45  Aligned_cols=121  Identities=45%  Similarity=0.849  Sum_probs=111.6

Q ss_pred             cCCCceeeec-ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc--CCcccc
Q 018266          157 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI--MPWLAI  233 (358)
Q Consensus       157 ~~~g~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~--~~~~~~  233 (358)
                      ..+|..+..+ .++||+|.++|.|.|||+|+.+.|.|.++|++.++ ....++||+||.|.+.+++..++..  ++|+.+
T Consensus        19 ~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~-~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~i   97 (157)
T KOG2501|consen   19 KQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKD-NAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAI   97 (157)
T ss_pred             ccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHh-cCCceEEEEEecCCCHHHHHHHHHhcCCCeEEe
Confidence            6667766666 78999999999999999999999999999999986 4457999999999999999999984  679999


Q ss_pred             ccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCC
Q 018266          234 PYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA  278 (358)
Q Consensus       234 ~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~  278 (358)
                      |+.++..+++.++|+|.++|++.+++++|+++..+||..+..+|.
T Consensus        98 Pf~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~  142 (157)
T KOG2501|consen   98 PFGDDLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS  142 (157)
T ss_pred             cCCCHHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc
Confidence            999999999999999999999999999999999999999999985

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.82  E-value=7.3e-20  Score=149.67  Aligned_cols=117  Identities=28%  Similarity=0.489  Sum_probs=102.0

Q ss_pred             hhhccCCcee-c--CCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~--~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      .|.++|+|.+ +  .+|+.+++++++||+++|+||++ |||+|..++|.|.+++++|+.   .++.+++|+.+.+.. ..
T Consensus         2 ~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~---~~v~~v~v~~~~~~~-~~   77 (146)
T PF08534_consen    2 VGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKD---KGVDVVGVSSDDDPP-VR   77 (146)
T ss_dssp             TTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTCEEEEEEESSSHH-HH
T ss_pred             CCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhcc---CceEEEEecccCCHH-HH
Confidence            4788999997 4  99999999999999999999999 999999999999999999986   889999999998876 66


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCC---------ceeeEEEECCCCcEEecC
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~  268 (358)
                      +++...+ ..+|+..|....+.+.|++.         ++|++++||++|+|++++
T Consensus        78 ~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~  131 (146)
T PF08534_consen   78 EFLKKYG-INFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH  131 (146)
T ss_dssp             HHHHHTT-TTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred             HHHHhhC-CCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence            6666533 56777777788999999998         999999999999999984

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.82  E-value=9.4e-20  Score=137.67  Aligned_cols=93  Identities=41%  Similarity=0.833  Sum_probs=85.0

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC--CccccccCchhHHHHHHHc
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM--PWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~  247 (358)
                      ||+++|+||++||++|+.++|.|.+++++|++  +.+++||+|++|.+.+++.++++.+  +|..+++..+....+.+.|
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   78 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK--KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKY   78 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT--TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHC
Confidence            79999999999999999999999999999982  4899999999999999999999977  8999999988889999999


Q ss_pred             CCCceeeEEEECCCCcE
Q 018266          248 NIKGIPALVLIGPDGKT  264 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v  264 (358)
                      ++.++|+++|+|++|+|
T Consensus        79 ~i~~iP~~~lld~~G~I   95 (95)
T PF13905_consen   79 GINGIPTLVLLDPDGKI   95 (95)
T ss_dssp             T-TSSSEEEEEETTSBE
T ss_pred             CCCcCCEEEEECCCCCC
Confidence            99999999999999987

...

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.82  E-value=1.7e-19  Score=141.03  Aligned_cols=110  Identities=20%  Similarity=0.350  Sum_probs=93.9

Q ss_pred             CCcee-cCCCceeeecccC-CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCC
Q 018266          152 RDYVL-SRDHRKITVSELA-GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP  229 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~-~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  229 (358)
                      |+|.+ +.+|+.+++++++ ||+++|+||++||++|+.++|.++++++++.    .++.++.++ +.+.++..++.+.++
T Consensus         1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~----~~~~vi~v~-~~~~~~~~~~~~~~~   75 (114)
T cd02967           1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEA----DWLDVVLAS-DGEKAEHQRFLKKHG   75 (114)
T ss_pred             CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhc----CCcEEEEEe-CCCHHHHHHHHHHhC
Confidence            67887 8899999999997 9999999999999999999999999988875    568888775 667788888888776


Q ss_pred             ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       230 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ...+|...+  ..+.+.|++..+|++++||++|+|++++
T Consensus        76 ~~~~p~~~~--~~~~~~~~~~~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          76 LEAFPYVLS--AELGMAYQVSKLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             CCCCcEEec--HHHHhhcCCCCcCeEEEECCCCeEEecc
Confidence            555665443  4688999999999999999999999874

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.80  E-value=4.6e-19  Score=169.53  Aligned_cols=115  Identities=17%  Similarity=0.257  Sum_probs=101.2

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHH
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEF  221 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~  221 (358)
                      +..+|+|.+ +.+|+.+.++  +||+|+|+|||+||++|+.++|.|.+++++++.   .++.||+|+++     .+.+.+
T Consensus        35 ~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~~~  109 (521)
T PRK14018         35 PHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDGDF  109 (521)
T ss_pred             cCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHHHH
Confidence            457899998 9999998887  899999999999999999999999999999975   67999999873     334677


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+++..+.+..+|+..|....+++.|+|.++|+++|||++|+|+.+
T Consensus       110 ~~~~~~~~y~~~pV~~D~~~~lak~fgV~giPTt~IIDkdGkIV~~  155 (521)
T PRK14018        110 QKWYAGLDYPKLPVLTDNGGTLAQSLNISVYPSWAIIGKDGDVQRI  155 (521)
T ss_pred             HHHHHhCCCcccceeccccHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence            7777777777788887888899999999999999999999999988

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.79  E-value=3.2e-19  Score=141.57  Aligned_cols=116  Identities=30%  Similarity=0.566  Sum_probs=102.7

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|.||++ ||+.|...++.|++++++|+.   .++.+++|+.|.. ++..++
T Consensus         1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~---~~~~vi~is~d~~-~~~~~~   76 (124)
T PF00578_consen    1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD---KGVQVIGISTDDP-EEIKQF   76 (124)
T ss_dssp             TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSSH-HHHHHH
T ss_pred             CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhcc---ceEEeeecccccc-cchhhh
Confidence            5889999999 899999999999999999999999 999999999999999999986   7999999999754 455666


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ....+ ..+|+..|....+.+.|++.      .+|+++|||++|+|+++
T Consensus        77 ~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   77 LEEYG-LPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHT-CSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             hhhhc-cccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            65444 56777777889999999998      99999999999999874

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.79  E-value=4.5e-19  Score=150.53  Aligned_cols=116  Identities=20%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             HhhhhccCCcee-cCC--Cceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          145 QLLAIEGRDYVL-SRD--HRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~--g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      ...|..+|+|.+ +.+  |+.++++.+ +||+++|+||++||++|+.++|.|.++.+       .+++|++|+.+.+.+.
T Consensus        39 ~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~-------~~~~vi~v~~~~~~~~  111 (185)
T PRK15412         39 ALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA-------QGIRVVGMNYKDDRQK  111 (185)
T ss_pred             hhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH-------cCCEEEEEECCCCHHH
Confidence            456888999998 666  466666665 79999999999999999999999987743       4688999999888887


Q ss_pred             HHHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..+++.++.. .+| ...|....+.+.|++.++|++++||++|+|++++
T Consensus       112 ~~~~~~~~~~-~~~~~~~D~~~~~~~~~gv~~~P~t~vid~~G~i~~~~  159 (185)
T PRK15412        112 AISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH  159 (185)
T ss_pred             HHHHHHHcCC-CCceEEEcCCccHHHhcCCCcCCeEEEECCCceEEEEE
Confidence            8888876553 333 2445567788999999999999999999999884

>PTZ00102 disulphide isomerase; Provisional

Probab=99.78  E-value=2.3e-18  Score=168.04  Aligned_cols=94  Identities=16%  Similarity=0.316  Sum_probs=69.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .||+|+|+|||+||++|+.+.|.|.++++.+++  ...+.++.+..+..                       ...++.|+
T Consensus       374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~v~~~~id~~~~-----------------------~~~~~~~~  428 (477)
T PTZ00102        374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKD--NDSIIVAKMNGTAN-----------------------ETPLEEFS  428 (477)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCcEEEEEEECCCC-----------------------ccchhcCC
Confidence            478999999999999999999999999998873  23466666666543                       45678899


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA  301 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  301 (358)
                      ++++||+++++++|++..+       +.|...       .+.+.+.+++....
T Consensus       429 v~~~Pt~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~i~~~~~~  467 (477)
T PTZ00102        429 WSAFPTILFVKAGERTPIP-------YEGERT-------VEGFKEFVNKHATN  467 (477)
T ss_pred             CcccCeEEEEECCCcceeE-------ecCcCC-------HHHHHHHHHHcCCC
Confidence            9999999999877765322       234322       45666667666543

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.78  E-value=9.2e-19  Score=139.62  Aligned_cols=112  Identities=17%  Similarity=0.189  Sum_probs=95.0

Q ss_pred             ccCCcee-cCCC--ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          150 EGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       150 ~~p~f~l-~~~g--~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      .+|+|.+ +.+|  +.+++++++||+++|+||++||++|+.++|.|+++.+++      +++|++|+.+.+.+.+.+++.
T Consensus         2 ~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~------~~~vv~v~~~~~~~~~~~~~~   75 (127)
T cd03010           2 PAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG------RVPIYGINYKDNPENALAWLA   75 (127)
T ss_pred             CCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc------CcEEEEEECCCCHHHHHHHHH
Confidence            5788988 7777  889999999999999999999999999999999987654      388999999888888888887


Q ss_pred             cCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.....+...|....+++.|++.++|++++||++|+++.+
T Consensus        76 ~~~~~~~~~~~D~~~~~~~~~~v~~~P~~~~ld~~G~v~~~  116 (127)
T cd03010          76 RHGNPYAAVGFDPDGRVGIDLGVYGVPETFLIDGDGIIRYK  116 (127)
T ss_pred             hcCCCCceEEECCcchHHHhcCCCCCCeEEEECCCceEEEE
Confidence            65532223444556789999999999999999999999987

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.78  E-value=3.8e-18  Score=143.27  Aligned_cols=146  Identities=16%  Similarity=0.296  Sum_probs=116.2

Q ss_pred             hhccCCcee-cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          148 AIEGRDYVL-SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      |..+|+|.+ +.+|+.++++++ ++|++||+||++||+.|..+++.|.+++++|++   .++.|++|++|.       +.
T Consensus         1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~   77 (171)
T cd02969           1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSP   77 (171)
T ss_pred             CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCH
Confidence            456889998 889999999998 899999999999999999999999999999985   789999999985       46


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCC-CchhhHHHHHHHHHH
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFP-FTESRIAEIETALKK  297 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p-~~~~~~~~L~~~l~~  297 (358)
                      +.+.++...+.. .+|+..|....+.+.|++..+|+++|+|++|+|++..+.      +..... .......+|.++++.
T Consensus        78 ~~~~~~~~~~~~-~~~~l~D~~~~~~~~~~v~~~P~~~lid~~G~v~~~~~~------~~~~~~~~~~~~~~~~~~~i~~  150 (171)
T cd02969          78 ENMKAKAKEHGY-PFPYLLDETQEVAKAYGAACTPDFFLFDPDGKLVYRGRI------DDSRPGNDPPVTGRDLRAALDA  150 (171)
T ss_pred             HHHHHHHHHCCC-CceEEECCchHHHHHcCCCcCCcEEEECCCCeEEEeecc------cCCcccccccccHHHHHHHHHH
Confidence            788888876654 367777778899999999999999999999999987531      111000 122345567777777


Q ss_pred             hcCCCC
Q 018266          298 EGDALP  303 (358)
Q Consensus       298 ~~~~~~  303 (358)
                      .+..-+
T Consensus       151 ~l~~~~  156 (171)
T cd02969         151 LLAGKP  156 (171)
T ss_pred             HHcCCC
Confidence            665544

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.77  E-value=2.5e-18  Score=149.40  Aligned_cols=120  Identities=19%  Similarity=0.259  Sum_probs=93.2

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R  216 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~  216 (358)
                      ...+..+|+|.+ +.+|+.+++++++||++||+||++||++|..++|.|++++++|++   .+++||+|++|       .
T Consensus        73 ~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~---~Gv~VIgV~~d~~~~~e~~  149 (236)
T PLN02399         73 AATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKT---QGFEILAFPCNQFGGQEPG  149 (236)
T ss_pred             hhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhc---CCcEEEEEecccccccCCC
Confidence            346788999999 899999999999999999999999999999999999999999986   78999999975       2


Q ss_pred             CHHHHHHhhh-cCCccccccCc--hhHH-HHHHHc-------C------CCceeeEEEECCCCcEEecC
Q 018266          217 DHKEFDLNHS-IMPWLAIPYED--RARQ-DLCRIF-------N------IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       217 ~~~~~~~~~~-~~~~~~~~~~~--~~~~-~l~~~~-------~------v~~~P~~~lid~~G~v~~~~  268 (358)
                      +.++..+++. .++ +.+|+..  |.+. .+...|       +      +...|+.+|||++|+|+.+.
T Consensus       150 s~~ei~~f~~~~~g-~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~  217 (236)
T PLN02399        150 SNPEIKQFACTRFK-AEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERY  217 (236)
T ss_pred             CHHHHHHHHHHhcC-CCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEE
Confidence            4456677663 332 3455532  2111 222222       2      35579999999999999883

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.77  E-value=1.3e-18  Score=138.50  Aligned_cols=105  Identities=21%  Similarity=0.297  Sum_probs=92.9

Q ss_pred             CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCHHHHHHhhhcCCccccc
Q 018266          160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDHKEFDLNHSIMPWLAIP  234 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~~~~~~~~~~~~~~~~~  234 (358)
                      |+++++++++||+++|+||++||++|..++|.|++++++|++   .++.|++|+.+     .+.+.+.++...+. +.+|
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~---~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~-~~~p   88 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD---DGLVVIGVHSPEFAFERDLANVKSAVLRYG-ITYP   88 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc---CCeEEEEeccCccccccCHHHHHHHHHHcC-CCCC
Confidence            578999999999999999999999999999999999999986   78999999863     45677778777665 3577


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +..|....+.+.|++.++|++++||++|+|+++.
T Consensus        89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~  122 (126)
T cd03012          89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH  122 (126)
T ss_pred             EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence            7778888999999999999999999999999884

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.77  E-value=4.1e-18  Score=143.41  Aligned_cols=118  Identities=24%  Similarity=0.441  Sum_probs=105.9

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      ..|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+...+.|.++++++++   .++.+++|+.|.+.+.+..+
T Consensus        36 ~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vi~i~~d~~~~~~~~~  112 (173)
T PRK03147         36 QVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKE---KGVEIIAVNVDETELAVKNF  112 (173)
T ss_pred             CCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEEcCCCHHHHHHH
Confidence            35788999998 899999999999999999999999999999999999999999985   67999999999998888888


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.++ ..+|+..+....+.+.|++..+|+++++|++|+++..
T Consensus       113 ~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~~  154 (173)
T PRK03147        113 VNRYG-LTFPVAIDKGRQVIDAYGVGPLPTTFLIDKDGKVVKV  154 (173)
T ss_pred             HHHhC-CCceEEECCcchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence            87665 3566666777899999999999999999999999976

>PLN02412 probable glutathione peroxidase

Probab=99.77  E-value=2.1e-18  Score=143.80  Aligned_cols=116  Identities=16%  Similarity=0.266  Sum_probs=89.7

Q ss_pred             hccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHH
Q 018266          149 IEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKE  220 (358)
Q Consensus       149 ~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~  220 (358)
                      ..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +.++
T Consensus         7 ~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~---~g~~vvgv~~~~~~~~~~~~~~~   83 (167)
T PLN02412          7 KSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE---QGFEILAFPCNQFLGQEPGSNEE   83 (167)
T ss_pred             CCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh---CCcEEEEecccccccCCCCCHHH
Confidence            56899998 899999999999999999999999999999999999999999986   789999999863       3445


Q ss_pred             HHHhh-hcCCccccccCch--hH-HHHHHHcC-------------CCceeeEEEECCCCcEEecC
Q 018266          221 FDLNH-SIMPWLAIPYEDR--AR-QDLCRIFN-------------IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~-~~~~~~~~~~~~~--~~-~~l~~~~~-------------v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..+++ ..+. +.+|...+  .. ......|+             +.+.|+.+|||++|+|+.+.
T Consensus        84 ~~~~~~~~~~-~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~  147 (167)
T PLN02412         84 IQQTVCTRFK-AEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY  147 (167)
T ss_pred             HHHHHHHccC-CCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence            55554 3332 44555321  11 12222222             66689999999999999883

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.76  E-value=3.3e-18  Score=143.76  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=93.8

Q ss_pred             HhhhhccCCcee-cCCCc--eeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          145 QLLAIEGRDYVL-SRDHR--KITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~--~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      ..+|..+|+|++ +.+|+  .++++.+ +||+++|+||++||++|+.++|.++++++       .+++|++|+.+.+.++
T Consensus        34 ~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~-------~~~~vi~V~~~~~~~~  106 (173)
T TIGR00385        34 ALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK-------DGLPIVGVDYKDQSQN  106 (173)
T ss_pred             hhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH-------cCCEEEEEECCCChHH
Confidence            456889999998 77776  4554565 68999999999999999999999877643       4588999999877777


Q ss_pred             HHHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..+++..+.+ .+| +..|....+.+.|++.++|++++||++|+++++.
T Consensus       107 ~~~~~~~~~~-~f~~v~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~  154 (173)
T TIGR00385       107 ALKFLKELGN-PYQAILIDPNGKLGLDLGVYGAPETFLVDGNGVILYRH  154 (173)
T ss_pred             HHHHHHHcCC-CCceEEECCCCchHHhcCCeeCCeEEEEcCCceEEEEE
Confidence            7777776653 333 3446667899999999999999999999999883

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.76  E-value=8.8e-18  Score=143.00  Aligned_cols=113  Identities=19%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             hhhhccCCcee-cCCCceeeec--ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~--~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      -+|.++|+|++ +.+|+.++++  ..+||+++|+||++||++|+.++|.+.++++++      ++.+++|+.| +.++..
T Consensus        47 ~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~------~~~vv~Is~~-~~~~~~  119 (189)
T TIGR02661        47 DVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE------ETDVVMISDG-TPAEHR  119 (189)
T ss_pred             CCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc------CCcEEEEeCC-CHHHHH
Confidence            46888999999 8999999994  578999999999999999999999999987653      3578888854 566777


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++++....++.  ....+.+.|++..+|+.++||++|+|+++
T Consensus       120 ~~~~~~~~~~~~~~--~~~~i~~~y~v~~~P~~~lID~~G~I~~~  162 (189)
T TIGR02661       120 RFLKDHELGGERYV--VSAEIGMAFQVGKIPYGVLLDQDGKIRAK  162 (189)
T ss_pred             HHHHhcCCCcceee--chhHHHHhccCCccceEEEECCCCeEEEc
Confidence            77776553222222  24678899999999999999999999986

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=99.76  E-value=4e-18  Score=148.22  Aligned_cols=172  Identities=16%  Similarity=0.200  Sum_probs=104.4

Q ss_pred             cCCCCEEEEEEeC---CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           39 SCGGKTICLFFSA---NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        39 ~~~gk~vlv~F~a---~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      ..++...++.|++   +||++|+.+.|.++++++++..    +++..+++|.++.                  .+++.+|
T Consensus        16 ~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~----~~i~~v~vd~~~~------------------~~l~~~~   73 (215)
T TIGR02187        16 ELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK----LKLEIYDFDTPED------------------KEEAEKY   73 (215)
T ss_pred             hcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC----ceEEEEecCCccc------------------HHHHHHc
Confidence            3455555666877   9999999999999999998732    5677788775433                  2567777


Q ss_pred             ccCCCCcchHhHH-H-----HHhhhhhhhccchhhHhhhhccCCceecCCCc-eeeecccCCcEEEEEEeccCCcccHhh
Q 018266          116 GADAYPFTRKRRE-E-----LKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHR-KITVSELAGKTIGLYFGAHWCPPCRSF  188 (358)
Q Consensus       116 gi~~~P~~~~~~~-~-----~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~-~~~l~~~~~k~vlv~F~a~wC~~C~~~  188 (358)
                      +|.++|+...... .     +.+..........+..+++...+.-.  ++.+ .-.+..+.+..+++.||++||++|+..
T Consensus        74 ~V~~~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~~~~~~~~~--L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~  151 (215)
T TIGR02187        74 GVERVPTTIILEEGKDGGIRYTGIPAGYEFAALIEDIVRVSQGEPG--LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYA  151 (215)
T ss_pred             CCCccCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHH
Confidence            7777775432111 0     11111111111122222221111111  1111 111223444556667999999999999


Q ss_pred             HHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018266          189 TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  263 (358)
Q Consensus       189 ~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~  263 (358)
                      .+.+.++..+.     .++.+..+..+.                       ...++++|+|.++||+++. .+|+
T Consensus       152 ~~~l~~l~~~~-----~~i~~~~vD~~~-----------------------~~~~~~~~~V~~vPtl~i~-~~~~  197 (215)
T TIGR02187       152 VLMAHKFALAN-----DKILGEMIEANE-----------------------NPDLAEKYGVMSVPKIVIN-KGVE  197 (215)
T ss_pred             HHHHHHHHHhc-----CceEEEEEeCCC-----------------------CHHHHHHhCCccCCEEEEe-cCCE
Confidence            99888877664     345555565554                       3678899999999999987 5565

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.76  E-value=2.2e-18  Score=141.72  Aligned_cols=113  Identities=15%  Similarity=0.228  Sum_probs=89.1

Q ss_pred             cCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHH
Q 018266          151 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFD  222 (358)
Q Consensus       151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~  222 (358)
                      .|+|.+ +.+|+.+++++++||+|+|+||++||+ |..++|.|++++++|++   .++.|++|+++.       +.+...
T Consensus         2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~   77 (152)
T cd00340           2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD---RGLVVLGFPCNQFGGQEPGSNEEIK   77 (152)
T ss_pred             cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC---CCEEEEEeccCccccCCCCCHHHHH
Confidence            478888 899999999999999999999999999 99999999999999986   789999998753       346677


Q ss_pred             Hhhhc-CCccccccCchh--HH-HHHHHcC--CCcee-----------eEEEECCCCcEEecC
Q 018266          223 LNHSI-MPWLAIPYEDRA--RQ-DLCRIFN--IKGIP-----------ALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~-~~~~~~~~~~~~--~~-~l~~~~~--v~~~P-----------~~~lid~~G~v~~~~  268 (358)
                      ++++. ++ +.+|+..+.  .. .....|+  +.++|           +.+|||++|+|+.+.
T Consensus        78 ~f~~~~~~-~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~  139 (152)
T cd00340          78 EFCETNYG-VTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRF  139 (152)
T ss_pred             HHHHHhcC-CCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEE
Confidence            77765 33 456665331  11 1334444  35566           799999999999883

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.76  E-value=5.1e-18  Score=145.21  Aligned_cols=118  Identities=13%  Similarity=0.176  Sum_probs=91.2

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~  218 (358)
                      .+..+|+|++ +.+|+.+++++++||+|||+||++||++|+.++|.|++++++|++   .++.|++|+++       .+.
T Consensus        15 ~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~---~g~~vvgv~~~~~~~~e~d~~   91 (199)
T PTZ00056         15 LRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP---LGLEILAFPTSQFLNQEFPNT   91 (199)
T ss_pred             cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc---CceEEEEecchhccCCCCCCH
Confidence            3567899998 899999999999999999999999999999999999999999986   78999999974       345


Q ss_pred             HHHHHhhhcCCccccccCch------hHHH--------HHHHcCCC----ce---eeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWLAIPYEDR------ARQD--------LCRIFNIK----GI---PALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~------~~~~--------l~~~~~v~----~~---P~~~lid~~G~v~~~~  268 (358)
                      ++..++++.++ +.+|+..+      ....        +...|++.    .+   |+.+|||++|+|+.+.
T Consensus        92 e~~~~f~~~~~-~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~  161 (199)
T PTZ00056         92 KDIRKFNDKNK-IKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYF  161 (199)
T ss_pred             HHHHHHHHHcC-CCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEe
Confidence            67788877554 34454321      1111        22234432    23   3799999999999874

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.75  E-value=1.4e-17  Score=139.03  Aligned_cols=116  Identities=13%  Similarity=0.144  Sum_probs=98.7

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|..++|.|+++++++     .+++|++|+.|.. ....++
T Consensus        20 ~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~-----~~~~vv~vs~D~~-~~~~~f   93 (167)
T PRK00522         20 VGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAEL-----DNTVVLCISADLP-FAQKRF   93 (167)
T ss_pred             CCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEeCCCH-HHHHHH
Confidence            5888999998 8899999999999999999999999 999999999999998887     3589999999853 445666


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCCcee---------eEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~  268 (358)
                      ...++...+++..| ....+++.||+...|         +.++||++|+|++.+
T Consensus        94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~  147 (167)
T PRK00522         94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE  147 (167)
T ss_pred             HHhCCCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence            66665434677776 456999999998777         999999999999884

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.74  E-value=1.9e-17  Score=134.90  Aligned_cols=116  Identities=16%  Similarity=0.185  Sum_probs=98.6

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++| |++|+.+++.|.++++++     .++.|++|++|. .+...++
T Consensus         2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~~~vi~Is~d~-~~~~~~~   75 (143)
T cd03014           2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKL-----DNTVVLTISADL-PFAQKRW   75 (143)
T ss_pred             CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc-----CCCEEEEEECCC-HHHHHHH
Confidence            4778999998 8999999999999999999999998 699999999999999987     358999999986 4455666


Q ss_pred             hhcCCccccccCchhH-HHHHHHcCCCc------eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRAR-QDLCRIFNIKG------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~-~~l~~~~~v~~------~P~~~lid~~G~v~~~~  268 (358)
                      ...+....++...|.. ..+.+.|++..      .|+.++||++|+|+..+
T Consensus        76 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~  126 (143)
T cd03014          76 CGAEGVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE  126 (143)
T ss_pred             HHhcCCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence            6666655677777765 88999999864      79999999999999884

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.74  E-value=3.5e-17  Score=137.62  Aligned_cols=119  Identities=18%  Similarity=0.302  Sum_probs=98.2

Q ss_pred             hhhccCCcee-cCCC----ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH-
Q 018266          147 LAIEGRDYVL-SRDH----RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK-  219 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g----~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~-  219 (358)
                      +|.++|+|.+ +.+|    +.+++++++||+++|+|| ++||++|..+++.|++++++|.+   .++.|++|++|.... 
T Consensus         1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~---~~v~vv~Is~d~~~~~   77 (173)
T cd03015           1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKK---LNAEVLGVSTDSHFSH   77 (173)
T ss_pred             CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEecCCHHHH
Confidence            4788999998 6666    789999999999999999 89999999999999999999986   789999999986432 


Q ss_pred             -HHHHhhhc---CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          220 -EFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 -~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                       .|.+....   ..-+.+++..|....+++.|++.      .+|+.+|||++|+|++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~  136 (173)
T cd03015          78 LAWRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHIT  136 (173)
T ss_pred             HHHHHhhhhhCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence             23333221   12245677778889999999986      688999999999999984

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR03137 AhpC peroxiredoxin

Probab=99.73  E-value=2.7e-17  Score=139.72  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=98.0

Q ss_pred             hhhhccCCcee-c-CCCc--eeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL-S-RDHR--KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~-~~g~--~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      .+|.++|+|.+ + .+|+  .+++++++||+++|+|| ++||++|..+++.|+++++++++   .+++|++|+.|...  
T Consensus         3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~---~gv~vi~VS~D~~~~~   79 (187)
T TIGR03137         3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKK---LGVEVYSVSTDTHFVH   79 (187)
T ss_pred             ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHh---cCCcEEEEeCCCHHHH
Confidence            46889999998 5 4666  57888999999999999 99999999999999999999986   78999999999742  


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      +.|.+.......+.+|+..|....+++.||+.      ..|+.++||++|+|++..
T Consensus        80 ~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~  135 (187)
T TIGR03137        80 KAWHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE  135 (187)
T ss_pred             HHHHhhhhhccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence            23333322222345677778889999999986      469999999999999874

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=2.7e-17  Score=154.47  Aligned_cols=58  Identities=17%  Similarity=0.380  Sum_probs=50.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      ...+++|.||||||+||+.++|+++++++.+++.++++.++.|++......+.+|...
T Consensus        41 ~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~   98 (493)
T KOG0190|consen   41 GHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVR   98 (493)
T ss_pred             cCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCC
Confidence            3579999999999999999999999999999999888888888887666667777666

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.73  E-value=2.6e-17  Score=135.75  Aligned_cols=116  Identities=20%  Similarity=0.294  Sum_probs=99.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++ ||+.|..+++.|.++++++++   .+++||+|+.|. .+...++
T Consensus         6 ~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~---~~v~vi~Is~d~-~~~~~~~   81 (154)
T PRK09437          6 AGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKK---AGVVVLGISTDK-PEKLSRF   81 (154)
T ss_pred             CCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHH
Confidence            4788999998 899999999999999999999986 677899999999999999986   789999999984 5777777


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCCce------------eeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIKGI------------PALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~------------P~~~lid~~G~v~~~  267 (358)
                      .+.++ ..+|+..|....+.+.|++...            |+.+|||++|+|+..
T Consensus        82 ~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  135 (154)
T PRK09437         82 AEKEL-LNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV  135 (154)
T ss_pred             HHHhC-CCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence            77654 3566666777889999998654            778999999999988

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.73  E-value=2.8e-17  Score=133.26  Aligned_cols=113  Identities=26%  Similarity=0.419  Sum_probs=99.8

Q ss_pred             ccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc
Q 018266          150 EGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  227 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  227 (358)
                      ++|+|.+ +.+|+.+++++++||+++|+|| ++||+.|..+++.|.++++++.+   .++.|++|+.|. .+.+.++...
T Consensus         2 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~~~~~~   77 (140)
T cd03017           2 KAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA---LGAVVIGVSPDS-VESHAKFAEK   77 (140)
T ss_pred             CCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHHHHHH
Confidence            5788998 8899999999999999999999 58999999999999999999986   789999999984 5667777776


Q ss_pred             CCccccccCchhHHHHHHHcCCCce---------eeEEEECCCCcEEec
Q 018266          228 MPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTIST  267 (358)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~  267 (358)
                      ++ ..+|+..|....+.+.|++...         |+.++||++|+|++.
T Consensus        78 ~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~  125 (140)
T cd03017          78 YG-LPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV  125 (140)
T ss_pred             hC-CCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence            55 3567777777899999999988         999999999999988

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.72  E-value=7.3e-17  Score=136.20  Aligned_cols=120  Identities=18%  Similarity=0.292  Sum_probs=98.5

Q ss_pred             hhhhccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      .+|.++|+|..    +.+...+++++++||+++|+|| +.||+.|..+++.|.+++++|.+   .+++|++|+.|...  
T Consensus         3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~---~g~~vigIS~D~~~~~   79 (187)
T PRK10382          3 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH   79 (187)
T ss_pred             ccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHh---CCCEEEEEeCCCHHHH
Confidence            57899999997    3444567788999999999999 99999999999999999999986   88999999998643  


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCC----Cce--eeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGI--PALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~--P~~~lid~~G~v~~~~  268 (358)
                      ..|.+.......+.+|+..|....+++.||+    .++  |++++||++|+|++..
T Consensus        80 ~a~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~  135 (187)
T PRK10382         80 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  135 (187)
T ss_pred             HHHHHhhccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEE
Confidence            3344333222335678888889999999998    355  9999999999999884

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.72  E-value=6.5e-17  Score=132.61  Aligned_cols=117  Identities=18%  Similarity=0.249  Sum_probs=98.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCC-cEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~-k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      +|.++|+|.+ +.+|+.+++++++| |+++|.|| ++||+.|...+|.|+++++++++   .++.+++|+.|. .+...+
T Consensus         3 ~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~v~vi~vs~d~-~~~~~~   78 (149)
T cd03018           3 VGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEA---AGAEVLGISVDS-PFSLRA   78 (149)
T ss_pred             CCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh---CCCEEEEecCCC-HHHHHH
Confidence            4788999998 88999999999999 99888887 99999999999999999999986   789999999885 455666


Q ss_pred             hhhcCCccccccCchhH--HHHHHHcCCCc----e--eeEEEECCCCcEEecC
Q 018266          224 NHSIMPWLAIPYEDRAR--QDLCRIFNIKG----I--PALVLIGPDGKTISTN  268 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~--~~l~~~~~v~~----~--P~~~lid~~G~v~~~~  268 (358)
                      +.+.++ +.+|+..|..  ..+.+.|++..    +  |++++||++|+|+++.
T Consensus        79 ~~~~~~-~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~  130 (149)
T cd03018          79 WAEENG-LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAW  130 (149)
T ss_pred             HHHhcC-CCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEE
Confidence            666554 4567666655  88999999873    3  4899999999999884

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.72  E-value=7.7e-17  Score=136.55  Aligned_cols=117  Identities=19%  Similarity=0.270  Sum_probs=88.3

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      ....|+|++ +.+|+.+++++++||++ ++.+|++||++|+.++|.|++++++|++   .++.|++|++|.       +.
T Consensus        17 ~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~---~gv~vv~vs~~~~~~~~~~~~   93 (183)
T PTZ00256         17 TKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS---QGLEILAFPCNQFMEQEPWDE   93 (183)
T ss_pred             CCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh---CCcEEEEEecccccccCCCCH
Confidence            456789998 89999999999999965 5566999999999999999999999986   789999999752       33


Q ss_pred             HHHHHhhh-cCCccccccCch--hH----HHHH----H--------HcCCCceee---EEEECCCCcEEecC
Q 018266          219 KEFDLNHS-IMPWLAIPYEDR--AR----QDLC----R--------IFNIKGIPA---LVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~-~~~~~~~~~~~~--~~----~~l~----~--------~~~v~~~P~---~~lid~~G~v~~~~  268 (358)
                      +...+++. .++ +.+|...+  ..    ..+.    .        .+++.++|+   .+|||++|+|+.+.
T Consensus        94 ~~~~~f~~~~~~-~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~  164 (183)
T PTZ00256         94 PEIKEYVQKKFN-VDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYF  164 (183)
T ss_pred             HHHHHHHHHhcC-CCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEE
Confidence            56666664 333 34554422  11    1222    1        236778995   69999999999884

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.71  E-value=8.4e-17  Score=125.18  Aligned_cols=110  Identities=28%  Similarity=0.518  Sum_probs=98.0

Q ss_pred             cee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHHhhhcCCcc
Q 018266          154 YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMPWL  231 (358)
Q Consensus       154 f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~~~  231 (358)
                      |.+ +.+|+.++++++++|+++|+||++||++|+..++.|.++.+++..   .++.+++|++|.. .+.+..++..++ .
T Consensus         2 ~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~~~~~~~~~~~~~~-~   77 (116)
T cd02966           2 FSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKD---DGVEVVGVNVDDDDPAAVKAFLKKYG-I   77 (116)
T ss_pred             ccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCC---CCeEEEEEECCCCCHHHHHHHHHHcC-C
Confidence            455 788999999999999999999999999999999999999999874   7799999999987 889999988776 5


Q ss_pred             ccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          232 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       232 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+++..+....+.+.|++.++|+++++|++|+++++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~P~~~l~d~~g~v~~~  113 (116)
T cd02966          78 TFPVLLDPDGELAKAYGVRGLPTTFLIDRDGRIRAR  113 (116)
T ss_pred             CcceEEcCcchHHHhcCcCccceEEEECCCCcEEEE
Confidence            666666667889999999999999999999999876

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.70  E-value=8.5e-17  Score=132.48  Aligned_cols=112  Identities=18%  Similarity=0.216  Sum_probs=85.4

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHHHHh
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEFDLN  224 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~~~~  224 (358)
                      +|++ +.+|+.+++++++||+++|+||++||++|..++|.|++++++|++   .++.|++|+++       .+.+...++
T Consensus         4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~---~~~~v~~i~~~~~~~~~~d~~~~~~~f   80 (153)
T TIGR02540         4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGP---SHFNVLAFPCNQFGESEPDSSKEIESF   80 (153)
T ss_pred             cceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh---CCeEEEEEeccccccCCCCCHHHHHHH
Confidence            4666 789999999999999999999999999999999999999999986   78999999852       345667777


Q ss_pred             hhc-CCccccccCch-----hHHHHHHHcC---CCceee----EEEECCCCcEEecC
Q 018266          225 HSI-MPWLAIPYEDR-----ARQDLCRIFN---IKGIPA----LVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~-~~~~~~~~~~~-----~~~~l~~~~~---v~~~P~----~~lid~~G~v~~~~  268 (358)
                      .+. ++ +.+|...+     ........|.   ..++|+    .+|||++|+|+.+.
T Consensus        81 ~~~~~~-~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~  136 (153)
T TIGR02540        81 ARRNYG-VTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFW  136 (153)
T ss_pred             HHHhcC-CCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEE
Confidence            754 33 34555322     1111111232   236898    99999999999883

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=5.3e-17  Score=153.47  Aligned_cols=175  Identities=20%  Similarity=0.372  Sum_probs=116.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|.||+|||+||+.+.|.|.+++..++..   +.+..|+++.+.                    .+|++|+|.+|
T Consensus        46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~---~~~~~vd~~~~~--------------------~~~~~y~i~gf  102 (383)
T KOG0191|consen   46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK---VKIGAVDCDEHK--------------------DLCEKYGIQGF  102 (383)
T ss_pred             cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc---eEEEEeCchhhH--------------------HHHHhcCCccC
Confidence            4689999999999999999999999999999874   445444444433                    68999999999


Q ss_pred             CcchHhHHHH-HhhhhhhhccchhhHhhhhccCCcee-cCCCceeeec--cc------CCcEEEEEEeccCCcccHhhHH
Q 018266          121 PFTRKRREEL-KAIDDSKRQGGKLEQLLAIEGRDYVL-SRDHRKITVS--EL------AGKTIGLYFGAHWCPPCRSFTS  190 (358)
Q Consensus       121 P~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~p~f~l-~~~g~~~~l~--~~------~~k~vlv~F~a~wC~~C~~~~~  190 (358)
                      |+........ ...+...+.+..+.........+-.. ...++.+.+.  .+      ....++|.|+++||++|+.+.|
T Consensus       103 Ptl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~  182 (383)
T KOG0191|consen  103 PTLKVFRPGKKPIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAP  182 (383)
T ss_pred             cEEEEEcCCCceeeccCcccHHHHHHHHHHhhccccccccCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcCh
Confidence            9754333320 11111222233333322222111111 1111122221  11      2467999999999999999999


Q ss_pred             HHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018266          191 QLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  263 (358)
Q Consensus       191 ~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~  263 (358)
                      .+.++...++.  ...+.+..+..+.                       ...++..++|.++|++.++-++.+
T Consensus       183 ~~~~~a~~~~~--~~~v~~~~~d~~~-----------------------~~~~~~~~~v~~~Pt~~~f~~~~~  230 (383)
T KOG0191|consen  183 EWEKLAKLLKS--KENVELGKIDATV-----------------------HKSLASRLEVRGYPTLKLFPPGEE  230 (383)
T ss_pred             HHHHHHHHhcc--CcceEEEeeccch-----------------------HHHHhhhhcccCCceEEEecCCCc
Confidence            99999998862  3566666665552                       478899999999999999955555

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.69  E-value=3.8e-16  Score=134.18  Aligned_cols=118  Identities=19%  Similarity=0.250  Sum_probs=97.7

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEE-EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~  222 (358)
                      +|..+|+|.+ +..| .+++++++||+++| +||++||+.|..+++.|.++++++++   .+++|++|++|...  .+|.
T Consensus         4 vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~---~~~~vi~vS~D~~~~~~~w~   79 (202)
T PRK13190          4 LGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKK---LGVELVGLSVDSIYSHIAWL   79 (202)
T ss_pred             CCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHHH
Confidence            5888999998 5555 79999999997766 68999999999999999999999986   78999999999753  3444


Q ss_pred             Hhhh-cCC-ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          223 LNHS-IMP-WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~-~~~-~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      +.+. ..+ .+.+|+..|....+++.||+.      .+|+++|||++|+|++..
T Consensus        80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~  133 (202)
T PRK13190         80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMI  133 (202)
T ss_pred             HhHHHhcCCCceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEE
Confidence            4332 333 256888888889999999984      589999999999999773

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.68  E-value=3.2e-16  Score=127.05  Aligned_cols=114  Identities=21%  Similarity=0.306  Sum_probs=98.4

Q ss_pred             cCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018266          151 GRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  228 (358)
Q Consensus       151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  228 (358)
                      +|+|.+ +.+|+.+++++++||+++|+|| ++||+.|...++.|.+++++++.   .++.+++|+.|. .+...++...+
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~~i~is~d~-~~~~~~~~~~~   77 (140)
T cd02971           2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK---GGAEVLGVSVDS-PFSHKAWAEKE   77 (140)
T ss_pred             CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HHHHHHHHhcc
Confidence            688998 8999999999999999999999 78999999999999999999975   789999999874 55667777766


Q ss_pred             CccccccCchhHHHHHHHcCCCcee---------eEEEECCCCcEEecC
Q 018266          229 PWLAIPYEDRARQDLCRIFNIKGIP---------ALVLIGPDGKTISTN  268 (358)
Q Consensus       229 ~~~~~~~~~~~~~~l~~~~~v~~~P---------~~~lid~~G~v~~~~  268 (358)
                      +-..+++..|....+.+.|++...|         +.++||++|+|++++
T Consensus        78 ~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~  126 (140)
T cd02971          78 GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVE  126 (140)
T ss_pred             cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEE
Confidence            3456677777778999999987655         899999999999984

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.68  E-value=2.3e-16  Score=124.96  Aligned_cols=106  Identities=20%  Similarity=0.378  Sum_probs=90.7

Q ss_pred             CCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHHhhhcCC
Q 018266          152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLNHSIMP  229 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~~~~~~  229 (358)
                      |+|.+ +.+|+.+++..++||+++|+||++||++|+.++|.|.++++++        .+++|++|.+ .+.+.++.+.+.
T Consensus         1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~--------~~i~i~~~~~~~~~~~~~~~~~~   72 (123)
T cd03011           1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY--------PVVSVALRSGDDGAVARFMQKKG   72 (123)
T ss_pred             CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC--------CEEEEEccCCCHHHHHHHHHHcC
Confidence            67887 8899999999999999999999999999999999999987764        4788888764 677788777665


Q ss_pred             ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       230 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                       +.+|...+....+.+.|++.++|+++++|++| ++++
T Consensus        73 -~~~~~~~d~~~~~~~~~~i~~~P~~~vid~~g-i~~~  108 (123)
T cd03011          73 -YGFPVINDPDGVISARWGVSVTPAIVIVDPGG-IVFV  108 (123)
T ss_pred             -CCccEEECCCcHHHHhCCCCcccEEEEEcCCC-eEEE
Confidence             45666666678899999999999999999999 8766

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.67  E-value=5.7e-16  Score=133.82  Aligned_cols=119  Identities=15%  Similarity=0.122  Sum_probs=101.5

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEF  221 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~  221 (358)
                      .+|..+|+|.+ +.+|+...+++++||++ |++||++|||.|..+++.|.+++++|++   .+++|++|++|..  ...|
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~---~gv~vigIS~D~~~~~~~w   79 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKE---LNTELIGLSVDQVFSHIKW   79 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCCHHHHHHH
Confidence            57899999998 78888877789999975 6799999999999999999999999986   7899999999975  3557


Q ss_pred             HHhhhcC--CccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEec
Q 018266          222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~  267 (358)
                      .++++..  .-+.+|...|....+++.||+.       .+|+++|||++|+|+..
T Consensus        80 ~~~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~  134 (215)
T PRK13599         80 VEWIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI  134 (215)
T ss_pred             HHhHHHhcCCCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence            6666542  1356788888888999999983       68999999999999987

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.67  E-value=5.2e-16  Score=126.13  Aligned_cols=116  Identities=27%  Similarity=0.535  Sum_probs=94.7

Q ss_pred             cCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccC-CceEEEEEeCCCC---HHHHHHh
Q 018266          151 GRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTAN-HCFEVVLVSTDRD---HKEFDLN  224 (358)
Q Consensus       151 ~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~-~~~~vv~v~~d~~---~~~~~~~  224 (358)
                      +|+|++ +.+|+.+++.+++||+++|+||++||++ |..+++.|.++++++++ .+ .++++++|+.|..   .+.+.++
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~-~~~~~v~~v~vs~d~~~d~~~~~~~~   80 (142)
T cd02968           2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGA-DGGDDVQVVFISVDPERDTPEVLKAY   80 (142)
T ss_pred             CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhH-hhcCceEEEEEEECCCCCCHHHHHHH
Confidence            688998 8999999999999999999999999998 99999999999999985 11 3599999999853   4667777


Q ss_pred             hhcCC--ccccccCchhHHHHHHHcCCCce--------------eeEEEECCCCcEEec
Q 018266          225 HSIMP--WLAIPYEDRARQDLCRIFNIKGI--------------PALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~--~~~~~~~~~~~~~l~~~~~v~~~--------------P~~~lid~~G~v~~~  267 (358)
                      .+.++  |..+....+....+++.||+...              |+++|||++|+|+..
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~  139 (142)
T cd02968          81 AKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRY  139 (142)
T ss_pred             HHHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEe
Confidence            77653  44444444445789999997654              468999999999976

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK15000 peroxidase; Provisional

Probab=99.67  E-value=8.2e-16  Score=131.64  Aligned_cols=120  Identities=18%  Similarity=0.228  Sum_probs=96.2

Q ss_pred             hhhhccCCcee-cC--CCcee---eeccc-CCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018266          146 LLAIEGRDYVL-SR--DHRKI---TVSEL-AGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  217 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g~~~---~l~~~-~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  217 (358)
                      ++|.++|+|.+ +.  +|+.+   +++++ +||+++|+||+. ||+.|..+++.|.+++++|++   .+++|++|++|..
T Consensus         3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~---~g~~vigvS~D~~   79 (200)
T PRK15000          3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQK---RGVEVVGVSFDSE   79 (200)
T ss_pred             cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCH
Confidence            47899999998 43  34543   44444 799999999995 999999999999999999986   7899999999964


Q ss_pred             H--HHHHHhhh-cCC--ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          218 H--KEFDLNHS-IMP--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       218 ~--~~~~~~~~-~~~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      .  ..|.+... ...  -+.+|...|....+++.||+.      .+|+.++||++|+|++..
T Consensus        80 ~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~  141 (200)
T PRK15000         80 FVHNAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQV  141 (200)
T ss_pred             HHHHHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEE
Confidence            3  44544332 222  257888888889999999997      799999999999999873

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=1.4e-15  Score=122.47  Aligned_cols=116  Identities=21%  Similarity=0.336  Sum_probs=100.4

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|++ +.+|+.++|++++||+|+|+|| ..++|.|..++-.|+..+.++..   .+.+|++||.|.. ..-+++
T Consensus         6 ~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~---~~a~V~GIS~Ds~-~~~~~F   81 (157)
T COG1225           6 VGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEK---LGAVVLGISPDSP-KSHKKF   81 (157)
T ss_pred             CCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHh---CCCEEEEEeCCCH-HHHHHH
Confidence            5899999999 9999999999999999999998 47888899999999999999987   7999999999954 444555


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~  267 (358)
                      ..++. +.+|..+|....++++||+-            ..++.+|||++|+|++.
T Consensus        82 ~~k~~-L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~  135 (157)
T COG1225          82 AEKHG-LTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYV  135 (157)
T ss_pred             HHHhC-CCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEE
Confidence            55444 56899999999999999983            35789999999999987

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=99.66  E-value=6.9e-16  Score=128.63  Aligned_cols=119  Identities=14%  Similarity=0.132  Sum_probs=87.4

Q ss_pred             CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEE------EEEeCCCCHHHHHHhhh-------
Q 018266          160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEV------VLVSTDRDHKEFDLNHS-------  226 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~v------v~v~~d~~~~~~~~~~~-------  226 (358)
                      .+.++.++++||+++|+|||+||++|+.+.|.+.++.+       .++.+      ++|+.|++......+++       
T Consensus        49 y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~-------~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~  121 (184)
T TIGR01626        49 YQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAIKA-------AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGK  121 (184)
T ss_pred             ceeccHHHcCCCEEEEEEEecCCChhhccchHHHHHHH-------cCCCcccccceEEEECccchhhHHHHHHHHHHHhc
Confidence            44667788999999999999999999999999999833       44666      88999876544333332       


Q ss_pred             -cCCccccccCchhHHHHHHHcCCCceeeE-EEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          227 -IMPWLAIPYEDRARQDLCRIFNIKGIPAL-VLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       227 -~~~~~~~~~~~~~~~~l~~~~~v~~~P~~-~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                       .+||.  ++..|....+...|++.++|+. ++||++|+|+++.       .|.    .+++.++++...++++
T Consensus       122 ~~~P~~--~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~-------~G~----l~~ee~e~~~~li~~l  182 (184)
T TIGR01626       122 KENPWS--QVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVK-------EGA----LSDSDIQTVISLVNGL  182 (184)
T ss_pred             ccCCcc--eEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEE-------eCC----CCHHHHHHHHHHHHHH
Confidence             23332  3556667788899999999988 8999999999984       453    3344445555555544

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.66  E-value=1.5e-15  Score=122.98  Aligned_cols=97  Identities=18%  Similarity=0.353  Sum_probs=77.3

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..||+++|+||++||++|+.+.|.|.++++++.    ..+.|+.|.+|.+.                     ...+++.|
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~---------------------~~~~~~~~   72 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK---------------------WLPEIDRY   72 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc---------------------cHHHHHHc
Confidence            368999999999999999999999999999986    45788999888642                     24678899


Q ss_pred             CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          248 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      +|.++|++++||++|+++.+       ..|...       .++|.+.+++...+.|
T Consensus        73 ~V~~iPt~v~~~~~G~~v~~-------~~G~~~-------~~~l~~~l~~l~~~~~  114 (142)
T cd02950          73 RVDGIPHFVFLDREGNEEGQ-------SIGLQP-------KQVLAQNLDALVAGEP  114 (142)
T ss_pred             CCCCCCEEEEECCCCCEEEE-------EeCCCC-------HHHHHHHHHHHHcCCC
Confidence            99999999999999999987       345332       3455666666655444

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.65  E-value=7.2e-16  Score=161.42  Aligned_cols=117  Identities=21%  Similarity=0.286  Sum_probs=98.2

Q ss_pred             hhhccCCcee-c--CCCceeee-cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC---CC--C
Q 018266          147 LAIEGRDYVL-S--RDHRKITV-SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DR--D  217 (358)
Q Consensus       147 ~~~~~p~f~l-~--~~g~~~~l-~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~--~  217 (358)
                      .+..+|+|.. .  .+|+++++ ++++||+|||+|||+||++|+.++|.|++++++|++   .++.|++|+.   |.  +
T Consensus       393 ~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~---~~~~vvgV~~~~~D~~~~  469 (1057)
T PLN02919        393 TATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD---QPFTVVGVHSAKFDNEKD  469 (1057)
T ss_pred             cCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC---CCeEEEEEeccccccccc
Confidence            3677899986 2  67888887 589999999999999999999999999999999975   6799999974   33  4


Q ss_pred             HHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.+.+++..++ +.+|...|....+.+.|++.++|+++|||++|+++.+
T Consensus       470 ~~~~~~~~~~~~-i~~pvv~D~~~~~~~~~~V~~iPt~ilid~~G~iv~~  518 (1057)
T PLN02919        470 LEAIRNAVLRYN-ISHPVVNDGDMYLWRELGVSSWPTFAVVSPNGKLIAQ  518 (1057)
T ss_pred             HHHHHHHHHHhC-CCccEEECCchHHHHhcCCCccceEEEECCCCeEEEE
Confidence            566777777555 3456666667789999999999999999999999987

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.64  E-value=8.1e-16  Score=125.96  Aligned_cols=113  Identities=22%  Similarity=0.449  Sum_probs=93.2

Q ss_pred             cCCcee-cCCCceeeecccC-Cc-EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhc
Q 018266          151 GRDYVL-SRDHRKITVSELA-GK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSI  227 (358)
Q Consensus       151 ~p~f~l-~~~g~~~~l~~~~-~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~  227 (358)
                      +|+|++ +.+|+.++++++. ++ .+|++||++||++|+.+++.|.++++++++   .++.|++|+.|... ....+...
T Consensus         2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~---~~v~vv~V~~~~~~-~~~~~~~~   77 (149)
T cd02970           2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDA---LGVELVAVGPESPE-KLEAFDKG   77 (149)
T ss_pred             CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh---cCeEEEEEeCCCHH-HHHHHHHh
Confidence            688988 8899999998875 35 555556799999999999999999999986   78999999988654 33344444


Q ss_pred             CCccccccCchhHHHHHHHcCCC-----------------------------ceeeEEEECCCCcEEecC
Q 018266          228 MPWLAIPYEDRARQDLCRIFNIK-----------------------------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       228 ~~~~~~~~~~~~~~~l~~~~~v~-----------------------------~~P~~~lid~~G~v~~~~  268 (358)
                      . .+.+|+..|....+.+.|++.                             .+|+.+|||++|+|++.+
T Consensus        78 ~-~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~  146 (149)
T cd02970          78 K-FLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH  146 (149)
T ss_pred             c-CCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence            4 357888888889999999984                             799999999999999874

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.63  E-value=3.6e-15  Score=128.91  Aligned_cols=119  Identities=13%  Similarity=0.202  Sum_probs=97.6

Q ss_pred             hhhhccCCcee-cCCCceeee-cccCCcEEEE-EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH--H
Q 018266          146 LLAIEGRDYVL-SRDHRKITV-SELAGKTIGL-YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK--E  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l-~~~~~k~vlv-~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~--~  220 (358)
                      .+|.++|+|.+ +.+|+ +.+ +.++||+++| +||++||+.|..+++.|.+++++|+.   .+++|++|++|....  .
T Consensus         8 ~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~---~g~~VigvS~Ds~~~h~a   83 (215)
T PRK13191          8 LIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKK---LNTELIGLSVDSNISHIE   83 (215)
T ss_pred             cCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHHHHHH
Confidence            57899999998 66776 555 5579997665 88999999999999999999999987   789999999997643  5


Q ss_pred             HHHhhhcC-C-ccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIM-P-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~  268 (358)
                      |.++.... . -+.+|...|....+++.||+.       ..|+++|||++|+|++..
T Consensus        84 w~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~  140 (215)
T PRK13191         84 WVMWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLIL  140 (215)
T ss_pred             HHhhHHHhcCCCCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEE
Confidence            66655531 1 356788888889999999973       479999999999999873

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.63  E-value=4.1e-15  Score=127.98  Aligned_cols=118  Identities=14%  Similarity=0.189  Sum_probs=94.7

Q ss_pred             hhhccCCcee-cCCCceeeecccCC-cEE-EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAG-KTI-GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF  221 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~-k~v-lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~  221 (358)
                      +|..+|+|.+ +.+| .+++++++| |++ |++||++||+.|..+++.|.+++++|++   .+++|++|++|...  .+|
T Consensus         1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~---~gv~vigvS~D~~~~~~~~   76 (203)
T cd03016           1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKK---RNVKLIGLSVDSVESHIKW   76 (203)
T ss_pred             CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHHH
Confidence            4778999998 5666 589999988 654 5689999999999999999999999986   88999999999743  334


Q ss_pred             HHhhhcC--CccccccCchhHHHHHHHcCCC--------ceeeEEEECCCCcEEecC
Q 018266          222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIK--------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~--------~~P~~~lid~~G~v~~~~  268 (358)
                      .+.+..+  ..+.+|+..|....+++.||+.        ..|+.+|||++|+|++..
T Consensus        77 ~~~i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~  133 (203)
T cd03016          77 IEDIEEYTGVEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL  133 (203)
T ss_pred             HhhHHHhcCCCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEE
Confidence            4433322  2356788888889999999985        246799999999999873

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.63  E-value=3.1e-15  Score=131.74  Aligned_cols=121  Identities=17%  Similarity=0.129  Sum_probs=98.3

Q ss_pred             HhhhhccCCcee-c-CCC--ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018266          145 QLLAIEGRDYVL-S-RDH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-  217 (358)
Q Consensus       145 ~~~~~~~p~f~l-~-~~g--~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-  217 (358)
                      .++|.++|+|.+ + .+|  ..++++++ +||+++|+|| +.||++|..+++.|.+++++|++   .+++|++|++|.. 
T Consensus        68 ~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~---~gv~VigIS~Ds~~  144 (261)
T PTZ00137         68 SLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE---RGVKVLGVSVDSPF  144 (261)
T ss_pred             ccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCCHH
Confidence            367999999997 4 344  45899998 8888888877 89999999999999999999987   8899999999973 


Q ss_pred             -HHHHHHh-hhcC--CccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecC
Q 018266          218 -HKEFDLN-HSIM--PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       218 -~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~  268 (358)
                       ...|.+. .+..  ..+.+|+..|....+++.||+.     ..|+.+|||++|+|++..
T Consensus       145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~  204 (261)
T PTZ00137        145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA  204 (261)
T ss_pred             HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence             3445443 2221  2356888888889999999985     589999999999999874

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.63  E-value=9.4e-16  Score=127.00  Aligned_cols=96  Identities=18%  Similarity=0.271  Sum_probs=78.5

Q ss_pred             hccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018266          149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  228 (358)
Q Consensus       149 ~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  228 (358)
                      ...|+|.+ .+|+.+++++++    +|+||++||++|++++|.|++++++|+      +.|++|++|.+.+         
T Consensus        53 ~~~~~f~l-~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~~---------  112 (181)
T PRK13728         53 PAPRWFRL-SNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQYG------FSVFPYTLDGQGD---------  112 (181)
T ss_pred             CCCCccCC-CCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHcC------CEEEEEEeCCCCC---------
Confidence            35667775 589999999987    777999999999999999999999874      7999999986531         


Q ss_pred             CccccccCch-hHHHHHHHcCC--CceeeEEEECCCCcEEe
Q 018266          229 PWLAIPYEDR-ARQDLCRIFNI--KGIPALVLIGPDGKTIS  266 (358)
Q Consensus       229 ~~~~~~~~~~-~~~~l~~~~~v--~~~P~~~lid~~G~v~~  266 (358)
                        ..+|...+ ....+.+.|++  .++|+.||||++|+++.
T Consensus       113 --~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~  151 (181)
T PRK13728        113 --TAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL  151 (181)
T ss_pred             --CCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence              35666543 45667888995  69999999999999975

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=99.62  E-value=1.2e-15  Score=122.30  Aligned_cols=97  Identities=40%  Similarity=0.834  Sum_probs=78.4

Q ss_pred             ccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc
Q 018266           26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI  104 (358)
Q Consensus        26 ~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (358)
                      +||++.+|+ +++++++||+|+|+||++||++|+.++|.+.++++++.+.+.+++++.|++|.+++.+.++........+
T Consensus         1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~   80 (131)
T cd03009           1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAV   80 (131)
T ss_pred             CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEc
Confidence            578999999 9999999999999999999999999999999999999876556999999999888888777655322111


Q ss_pred             ---c-cccceeeeccccCCCCc
Q 018266          105 ---E-EDLIGLIEDYGADAYPF  122 (358)
Q Consensus       105 ---~-~~~~~l~~~~gi~~~P~  122 (358)
                         . +....+++.|++.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~v~~~P~  102 (131)
T cd03009          81 PFSDRERRSRLNRTFKIEGIPT  102 (131)
T ss_pred             ccCCHHHHHHHHHHcCCCCCCE
Confidence               1 12245667778777775

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.62  E-value=9.7e-15  Score=125.39  Aligned_cols=119  Identities=18%  Similarity=0.293  Sum_probs=97.8

Q ss_pred             hhhhccCCcee-----cCCCceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          146 LLAIEGRDYVL-----SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       146 ~~~~~~p~f~l-----~~~g~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      .+|.++|+|.+     +.+|+.+++++++||+++|+||+ .||+.|..+++.|.+++++|+.   .+++|++|++|....
T Consensus         7 ~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~---~g~~vv~IS~d~~~~   83 (199)
T PTZ00253          7 KINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNE---LNCEVLACSMDSEYA   83 (199)
T ss_pred             ccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHH
Confidence            46889999985     34567899999999999999995 8899999999999999999987   899999999997643


Q ss_pred             H--HHHhhhc---CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          220 E--FDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~--~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      .  |......   ..-+.+|+..|....+++.||+.      .+|+.+|||++|+|+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~  142 (199)
T PTZ00253         84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQI  142 (199)
T ss_pred             HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEE
Confidence            2  2211111   22367888888899999999985      47999999999999986

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=99.60  E-value=2.8e-15  Score=120.70  Aligned_cols=89  Identities=20%  Similarity=0.390  Sum_probs=71.6

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcC-----CCceEEEEEEecCChhHHHHHHhhCCCc-----cc
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-----GTELEVIFISFDHDENGFEEHFKSSDGT-----LI  104 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~-----~~~~~iv~i~~d~~~~~~~~~~~~~~~~-----~~  104 (358)
                      +++++++||+|+|+|||+||++|++++|.|.+++++++++     ++++++++|+.|.+++.+.+|.......     +.
T Consensus        18 ~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~   97 (146)
T cd03008          18 EIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE   97 (146)
T ss_pred             ccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence            4678999999999999999999999999999999988763     3459999999998888888887775422     22


Q ss_pred             ccccceeeeccccCCCCcc
Q 018266          105 EEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~~~~~~l~~~~gi~~~P~~  123 (358)
                      ......+.+.|++.++|++
T Consensus        98 ~~~~~~l~~~y~v~~iPt~  116 (146)
T cd03008          98 DEFRRELEAQFSVEELPTV  116 (146)
T ss_pred             chHHHHHHHHcCCCCCCEE
Confidence            2223467888899888864

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PRK13189 peroxiredoxin; Provisional

Probab=99.59  E-value=1.8e-14  Score=125.27  Aligned_cols=118  Identities=15%  Similarity=0.240  Sum_probs=95.1

Q ss_pred             hhhhccCCcee-cCCCceeeecc-cCCcEEE-EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSE-LAGKTIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~-~~~k~vl-v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  220 (358)
                      .+|..+|+|.+ +..|. +++++ ++||+++ ++||++||+.|..+++.|.+++++|++   .+++|++|++|...  .+
T Consensus        10 ~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~---~~v~VigvS~D~~~~h~a   85 (222)
T PRK13189         10 LIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRE---LNTELIGLSIDQVFSHIK   85 (222)
T ss_pred             cCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEECCCHHHHHH
Confidence            46899999998 66664 67776 4898554 578999999999999999999999986   88999999999754  34


Q ss_pred             HHHhhhc-CC-ccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEec
Q 018266          221 FDLNHSI-MP-WLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~~-~~-~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~  267 (358)
                      |.+.+.. .+ -+.+|...|....+++.||+.       .+|+++|||++|+|+..
T Consensus        86 w~~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~  141 (222)
T PRK13189         86 WVEWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI  141 (222)
T ss_pred             HHHhHHHhcCcCcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence            5544332 12 256778888889999999975       57999999999999877

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=1.1e-14  Score=114.91  Aligned_cols=77  Identities=25%  Similarity=0.551  Sum_probs=66.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+.+|+|+|||+||+||+.+.|.|+++..+|.    ..+.+.-|++|..                       .+++.+|+
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~----g~~k~~kvdtD~~-----------------------~ela~~Y~  112 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYA----GKFKLYKVDTDEH-----------------------PELAEDYE  112 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhc----CeEEEEEEccccc-----------------------cchHhhcc
Confidence            35899999999999999999999999999997    7788888888875                       68999999


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCC
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKA  280 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~  280 (358)
                      |.++||+++| ++|+.+.+       +.|...
T Consensus       113 I~avPtvlvf-knGe~~d~-------~vG~~~  136 (150)
T KOG0910|consen  113 ISAVPTVLVF-KNGEKVDR-------FVGAVP  136 (150)
T ss_pred             eeeeeEEEEE-ECCEEeee-------ecccCC
Confidence            9999999999 77777644       566554

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.57  E-value=1.7e-14  Score=110.56  Aligned_cols=72  Identities=18%  Similarity=0.438  Sum_probs=63.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+|+|||+||++|+.+.|.|.+++++++    +.+.++-|++|..                       ..+++.|+
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~----~~v~f~kVDvD~~-----------------------~~la~~~~   65 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVS----NFAVIYLVDIDEV-----------------------PDFNKMYE   65 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence            46799999999999999999999999999986    4467777877764                       68999999


Q ss_pred             CCceeeEEEECCCCcEEecC
Q 018266          249 IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~  268 (358)
                      |.++||++++ ++|+.+.+.
T Consensus        66 V~~iPTf~~f-k~G~~v~~~   84 (114)
T cd02954          66 LYDPPTVMFF-FRNKHMKID   84 (114)
T ss_pred             CCCCCEEEEE-ECCEEEEEE
Confidence            9999999999 899988774

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.55  E-value=4.4e-14  Score=108.11  Aligned_cols=74  Identities=20%  Similarity=0.379  Sum_probs=62.5

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .+||+|+|+||++||++|+.+.|.|.++++++.     ++.++.|+.|.+.+                    ...++++|
T Consensus        13 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~~--------------------~~~l~~~~   67 (103)
T cd02985          13 AKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN-----DVVFLLVNGDENDS--------------------TMELCRRE   67 (103)
T ss_pred             cCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CCEEEEEECCCChH--------------------HHHHHHHc
Confidence            458999999999999999999999999999883     36777777775421                    25789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|.++||++++ ++|+++.+
T Consensus        68 ~V~~~Pt~~~~-~~G~~v~~   86 (103)
T cd02985          68 KIIEVPHFLFY-KDGEKIHE   86 (103)
T ss_pred             CCCcCCEEEEE-eCCeEEEE
Confidence            99999998888 89998876

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=99.55  E-value=7.6e-14  Score=135.59  Aligned_cols=58  Identities=19%  Similarity=0.410  Sum_probs=47.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      ++++++|.|||+||++|+.++|.+.++++.++..+.++.++.|+++...+.+.++...
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~   74 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVS   74 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCc
Confidence            5789999999999999999999999999999877666888888887665545444433

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.53  E-value=2.9e-13  Score=113.63  Aligned_cols=73  Identities=16%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             ccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHHHH
Q 018266          150 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHKEF  221 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~~~  221 (358)
                      ..++|++ +.+|+.+++++++||++||.|||+||++|. .++.|++++++|++   .++.|++++++       .+.++.
T Consensus         4 ~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~---~gl~Vlg~p~nqf~~qe~~~~~ei   79 (183)
T PRK10606          4 SILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD---QGFVVLGFPCNQFLGQEPGSDEEI   79 (183)
T ss_pred             CccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh---CCeEEEEeeccccccCCCCCHHHH
Confidence            3567777 899999999999999999999999999996 69999999999986   88999999985       345667


Q ss_pred             HHhhh
Q 018266          222 DLNHS  226 (358)
Q Consensus       222 ~~~~~  226 (358)
                      .++..
T Consensus        80 ~~f~~   84 (183)
T PRK10606         80 KTYCR   84 (183)
T ss_pred             HHHHH
Confidence            77775

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=99.53  E-value=2.3e-14  Score=114.91  Aligned_cols=97  Identities=38%  Similarity=0.770  Sum_probs=75.6

Q ss_pred             cccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-ccc-
Q 018266           27 FLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-TLI-  104 (358)
Q Consensus        27 ~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~-  104 (358)
                      ||+|.+..+++++++||+|+|+||++||++|+..+|.+.++++++++.+.++++++|++|.+....+++..+... ..+ 
T Consensus         2 ~~~~~~~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~   81 (132)
T cd02964           2 FLLDGEGVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVP   81 (132)
T ss_pred             ccccCCccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeec
Confidence            567777339999999999999999999999999999999999999876445999999999887777777766531 111 


Q ss_pred             -cc--ccceeeeccccCCCCcc
Q 018266          105 -EE--DLIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 -~~--~~~~l~~~~gi~~~P~~  123 (358)
                       .+  ....+.+.|++.++|+.
T Consensus        82 ~~d~~~~~~~~~~~~v~~iPt~  103 (132)
T cd02964          82 FEDEELRELLEKQFKVEGIPTL  103 (132)
T ss_pred             cCcHHHHHHHHHHcCCCCCCEE
Confidence             11  12345667888888854

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PHA02278 thioredoxin-like protein

Probab=99.51  E-value=8.8e-14  Score=105.78  Aligned_cols=75  Identities=16%  Similarity=0.280  Sum_probs=62.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+|||+||++|+.+.|.+.++++++.    .+..++.|++|.+..                  + ...++++|+
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~----~~~~~~~vdvd~~~~------------------d-~~~l~~~~~   69 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGD----IKKPILTLNLDAEDV------------------D-REKAVKLFD   69 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhc----CCceEEEEECCcccc------------------c-cHHHHHHCC
Confidence            56899999999999999999999999988754    345688888886420                  0 257899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+.+.+
T Consensus        70 I~~iPT~i~f-k~G~~v~~   87 (103)
T PHA02278         70 IMSTPVLIGY-KDGQLVKK   87 (103)
T ss_pred             CccccEEEEE-ECCEEEEE
Confidence            9999999999 88888877

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=99.51  E-value=1.1e-13  Score=112.82  Aligned_cols=80  Identities=19%  Similarity=0.258  Sum_probs=58.3

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchh-HHHHHHHc-
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA-RQDLCRIF-  247 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~-  247 (358)
                      ++..+|+||++||++|++++|.|++++++++      +.|++|++|....      .     .+|...+. ...+...| 
T Consensus        50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~~------~-----~fp~~~~~~~~~~~~~~~  112 (153)
T TIGR02738        50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG------LPVYAFSLDGQGL------T-----GFPDPLPATPEVMQTFFP  112 (153)
T ss_pred             CCCEEEEEECCCChhHHHHHHHHHHHHHHcC------CcEEEEEeCCCcc------c-----ccccccCCchHHHHHHhc
Confidence            3556999999999999999999999998874      5799999886431      1     12221111 12233455 


Q ss_pred             --CCCceeeEEEECCCCcEEe
Q 018266          248 --NIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       248 --~v~~~P~~~lid~~G~v~~  266 (358)
                        ++.++|++++||++|+++.
T Consensus       113 ~~~v~~iPTt~LID~~G~~i~  133 (153)
T TIGR02738       113 NPRPVVTPATFLVNVNTRKAY  133 (153)
T ss_pred             cCCCCCCCeEEEEeCCCCEEE
Confidence              8899999999999988654

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]

Probab=99.51  E-value=2.3e-14  Score=114.17  Aligned_cols=97  Identities=34%  Similarity=0.673  Sum_probs=83.5

Q ss_pred             ccccCCCCc-eecc-cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc
Q 018266           26 EFLLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL  103 (358)
Q Consensus        26 ~~l~~~~g~-v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~  103 (358)
                      ..|...+|. +-.+ .++||+|+++|.|.||+||+.|+|.+.+.|+++++.+++++||+||.|.++..+..|+....+..
T Consensus        15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W   94 (157)
T KOG2501|consen   15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDW   94 (157)
T ss_pred             CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCe
Confidence            567788888 6666 58999999999999999999999999999999999999999999999999999999999877743


Q ss_pred             cc-----cccceeeeccccCCCCc
Q 018266          104 IE-----EDLIGLIEDYGADAYPF  122 (358)
Q Consensus       104 ~~-----~~~~~l~~~~gi~~~P~  122 (358)
                      ..     +.-.++.++|++.+.|.
T Consensus        95 ~~iPf~d~~~~~l~~ky~v~~iP~  118 (157)
T KOG2501|consen   95 LAIPFGDDLIQKLSEKYEVKGIPA  118 (157)
T ss_pred             EEecCCCHHHHHHHHhcccCcCce
Confidence            31     12246788888888885

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.50  E-value=1.9e-13  Score=104.37  Aligned_cols=71  Identities=18%  Similarity=0.371  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+|||+||++|+.+.|.|.+++++++.   ..+.++.++.| .                       ..++++|+
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d-~-----------------------~~~~~~~~   68 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD---DLLHFATAEAD-T-----------------------IDTLKRYR   68 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC---CcEEEEEEeCC-C-----------------------HHHHHHcC
Confidence            478999999999999999999999999999863   45677777777 3                       46789999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++ ++|+.+.+
T Consensus        69 v~~~Pt~~~~-~~g~~~~~   86 (102)
T cd02948          69 GKCEPTFLFY-KNGELVAV   86 (102)
T ss_pred             CCcCcEEEEE-ECCEEEEE
Confidence            9999999999 78888876

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.49  E-value=1.8e-13  Score=106.12  Aligned_cols=73  Identities=22%  Similarity=0.352  Sum_probs=63.5

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..+++++|+||++||++|+.+.|.+.+++++++.   .++.++.|++|..                       ..++++|
T Consensus        22 ~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~l~~~~   75 (111)
T cd02963          22 SFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP---LGVGIATVNAGHE-----------------------RRLARKL   75 (111)
T ss_pred             cCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh---cCceEEEEecccc-----------------------HHHHHHc
Confidence            3679999999999999999999999999999974   4677777877754                       5788999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|.++|+++++ ++|+++.+
T Consensus        76 ~V~~~Pt~~i~-~~g~~~~~   94 (111)
T cd02963          76 GAHSVPAIVGI-INGQVTFY   94 (111)
T ss_pred             CCccCCEEEEE-ECCEEEEE
Confidence            99999999999 68888766

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.47  E-value=3.7e-13  Score=101.60  Aligned_cols=71  Identities=18%  Similarity=0.368  Sum_probs=61.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.+.++++.+.    ..+.++.|+++..                       ..++++|+
T Consensus        11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~   63 (96)
T cd02956          11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQ----GQFVLAKVNCDAQ-----------------------PQIAQQFG   63 (96)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhC----CcEEEEEEeccCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999986    4466777776653                       68899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|++++++ +|+++.+
T Consensus        64 i~~~Pt~~~~~-~g~~~~~   81 (96)
T cd02956          64 VQALPTVYLFA-AGQPVDG   81 (96)
T ss_pred             CCCCCEEEEEe-CCEEeee
Confidence            99999999995 8887755

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.47  E-value=1.9e-13  Score=103.80  Aligned_cols=69  Identities=16%  Similarity=0.354  Sum_probs=56.8

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ++++||+++|.|||+||++|+.+.|.|.++++++++     +.++.|..+..                      ...+++
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-----~~~~~vd~~~~----------------------~~~l~~   66 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-----IRHLAIEESSI----------------------KPSLLS   66 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-----CceEEEECCCC----------------------CHHHHH
Confidence            346899999999999999999999999999999852     55666654411                      367899


Q ss_pred             HcCCCceeeEEEECCC
Q 018266          246 IFNIKGIPALVLIGPD  261 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~  261 (358)
                      +|+|.++||+++++++
T Consensus        67 ~~~V~~~PT~~lf~~g   82 (100)
T cd02999          67 RYGVVGFPTILLFNST   82 (100)
T ss_pred             hcCCeecCEEEEEcCC
Confidence            9999999999999543

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.7e-13  Score=102.42  Aligned_cols=69  Identities=22%  Similarity=0.559  Sum_probs=59.9

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +|.++|+|+|+|||||+.+.|.+.+|+.+|.    + +.++.|++|.                       ...+++.|+|
T Consensus        21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~----~-v~Flkvdvde-----------------------~~~~~~~~~V   72 (106)
T KOG0907|consen   21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYP----D-VVFLKVDVDE-----------------------LEEVAKEFNV   72 (106)
T ss_pred             CCeEEEEEECCCCcchhhhhhHHHHHHHHCC----C-CEEEEEeccc-----------------------CHhHHHhcCc
Confidence            6999999999999999999999999999997    3 6677777775                       2789999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      ..+||++++ ++|+.+.+
T Consensus        73 ~~~PTf~f~-k~g~~~~~   89 (106)
T KOG0907|consen   73 KAMPTFVFY-KGGEEVDE   89 (106)
T ss_pred             eEeeEEEEE-ECCEEEEE
Confidence            999999999 66666655

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.43  E-value=7.7e-13  Score=100.88  Aligned_cols=72  Identities=21%  Similarity=0.389  Sum_probs=61.6

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..+++++|.||++||++|+.+.|.+.+++++++    ..+.+..|++|..                       ..++++|
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~   68 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMD----GVIRIGAVNCGDD-----------------------RMLCRSQ   68 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhc----CceEEEEEeCCcc-----------------------HHHHHHc
Confidence            346899999999999999999999999999987    4577888888764                       5789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|+++||++++ ++|+.+.+
T Consensus        69 ~v~~~Pt~~~~-~~g~~~~~   87 (101)
T cd03003          69 GVNSYPSLYVF-PSGMNPEK   87 (101)
T ss_pred             CCCccCEEEEE-cCCCCccc
Confidence            99999999999 77875443

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=99.43  E-value=1e-12  Score=104.29  Aligned_cols=85  Identities=25%  Similarity=0.491  Sum_probs=64.0

Q ss_pred             CC-cEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          169 AG-KTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       169 ~~-k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      .+ |+++|+||++||++|+.+.+.+.   .+.+.++    +++.++.|++|.+.... .         ++........++
T Consensus        12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~~~-~---------~~~~~~~~~~l~   77 (125)
T cd02951          12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKEVT-D---------FDGEALSEKELA   77 (125)
T ss_pred             cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCceee-c---------cCCCCccHHHHH
Confidence            56 89999999999999999999875   5555554    56778888887653211 0         111112357899


Q ss_pred             HHcCCCceeeEEEECCC-CcEEec
Q 018266          245 RIFNIKGIPALVLIGPD-GKTIST  267 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~-G~v~~~  267 (358)
                      .+|++.++|+++++|++ |+++.+
T Consensus        78 ~~~~v~~~Pt~~~~~~~gg~~~~~  101 (125)
T cd02951          78 RKYRVRFTPTVIFLDPEGGKEIAR  101 (125)
T ss_pred             HHcCCccccEEEEEcCCCCceeEE
Confidence            99999999999999999 898877

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=2.7e-13  Score=114.58  Aligned_cols=89  Identities=20%  Similarity=0.468  Sum_probs=69.5

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      -.+|.|+|+|+|.||+||+...|.+..+..+|+.       .|++.+|.+.                     .+..+..+
T Consensus        19 ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-------aVFlkVdVd~---------------------c~~taa~~   70 (288)
T KOG0908|consen   19 AGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-------AVFLKVDVDE---------------------CRGTAATN   70 (288)
T ss_pred             cCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-------cEEEEEeHHH---------------------hhchhhhc
Confidence            3468999999999999999999999999999974       6677766554                     67889999


Q ss_pred             CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          248 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      ||.++||++++ ++|+       .+.++.|++        ...|++++.+.+.
T Consensus        71 gV~amPTFiff-~ng~-------kid~~qGAd--------~~gLe~kv~~~~s  107 (288)
T KOG0908|consen   71 GVNAMPTFIFF-RNGV-------KIDQIQGAD--------ASGLEEKVAKYAS  107 (288)
T ss_pred             CcccCceEEEE-ecCe-------EeeeecCCC--------HHHHHHHHHHHhc
Confidence            99999999999 4444       444467765        3455666665543

>PRK09381 trxA thioredoxin; Provisional

Probab=99.42  E-value=1.9e-12  Score=100.20  Aligned_cols=71  Identities=30%  Similarity=0.577  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|+++++++.    .++.++.+++|..                       ..++++|+
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   72 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG   72 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhC----CCcEEEEEECCCC-----------------------hhHHHhCC
Confidence            36899999999999999999999999999987    4578888888764                       46788999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        73 v~~~Pt~~~~-~~G~~~~~   90 (109)
T PRK09381         73 IRGIPTLLLF-KNGEVAAT   90 (109)
T ss_pred             CCcCCEEEEE-eCCeEEEE
Confidence            9999999999 79998876

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7e-13  Score=115.91  Aligned_cols=70  Identities=26%  Similarity=0.527  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +.++|||+||+|||++|+.++|.|.++..+|+    ..+.++.|++|.+                       ..++.+||
T Consensus        42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~----G~f~LakvN~D~~-----------------------p~vAaqfg   94 (304)
T COG3118          42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYK----GKFKLAKVNCDAE-----------------------PMVAAQFG   94 (304)
T ss_pred             cCCCeEEEecCCCCchHHHHHHHHHHHHHHhC----CceEEEEecCCcc-----------------------hhHHHHhC
Confidence            45799999999999999999999999999998    7788888888875                       68999999


Q ss_pred             CCceeeEEEECCCCcEEe
Q 018266          249 IKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~  266 (358)
                      |+++|++|+| ++|+.+.
T Consensus        95 iqsIPtV~af-~dGqpVd  111 (304)
T COG3118          95 VQSIPTVYAF-KDGQPVD  111 (304)
T ss_pred             cCcCCeEEEe-eCCcCcc
Confidence            9999999999 6666654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.41  E-value=1.3e-12  Score=100.17  Aligned_cols=76  Identities=22%  Similarity=0.388  Sum_probs=61.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .+|+++|+||++||++|+.+.+.+   .++.+.++    +++.++.|+++.+.                   +....+++
T Consensus        10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~-------------------~~~~~~~~   66 (104)
T cd02953          10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK----KDVVLLRADWTKND-------------------PEITALLK   66 (104)
T ss_pred             cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh----CCeEEEEEecCCCC-------------------HHHHHHHH
Confidence            578999999999999999999887   56777775    46777777776432                   11367889


Q ss_pred             HcCCCceeeEEEECC-CCcEEec
Q 018266          246 IFNIKGIPALVLIGP-DGKTIST  267 (358)
Q Consensus       246 ~~~v~~~P~~~lid~-~G~v~~~  267 (358)
                      +|++.++|+++++++ +|+++.+
T Consensus        67 ~~~i~~~Pti~~~~~~~g~~~~~   89 (104)
T cd02953          67 RFGVFGPPTYLFYGPGGEPEPLR   89 (104)
T ss_pred             HcCCCCCCEEEEECCCCCCCCcc
Confidence            999999999999988 8888766

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.1e-12  Score=105.32  Aligned_cols=120  Identities=22%  Similarity=0.353  Sum_probs=101.7

Q ss_pred             HhhhhccCCcee-cC-CCc---eeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-
Q 018266          145 QLLAIEGRDYVL-SR-DHR---KITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-  217 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~-~g~---~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-  217 (358)
                      .++|.++|+|.. .. .|.   +++++++.||+++|+||. ...+.|..++..+.+.+.+|++   .+++|+++|+|.. 
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~---~g~eVigvS~Ds~f   79 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQK---RGVEVIGVSTDSVF   79 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHH---cCCEEEEEecCcHH
Confidence            468999999998 33 553   899999889999999985 4556699999999999999997   9999999999974 


Q ss_pred             -HHHHHHhhhcCCc---cccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          218 -HKEFDLNHSIMPW---LAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 -~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                       +..|.+...+...   ..+|...|...++++.||+.      .+..+++||++|+|++.
T Consensus        80 sH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~  139 (194)
T COG0450          80 SHKAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHI  139 (194)
T ss_pred             HHHHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEE
Confidence             5678888665443   78899999999999999984      57789999999999876

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=99.40  E-value=1.2e-13  Score=104.98  Aligned_cols=64  Identities=19%  Similarity=0.369  Sum_probs=51.1

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++++||+|+|.|||+||+||++++|.|+++++.+.+    +.++.|+.+. ..                  ..++++|+|
T Consensus        14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~-~~------------------~~l~~~~~V   70 (100)
T cd02999          14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESS-IK------------------PSLLSRYGV   70 (100)
T ss_pred             HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCC-CC------------------HHHHHhcCC
Confidence            357899999999999999999999999999998853    4566655441 11                  257899999


Q ss_pred             CCCCcch
Q 018266          118 DAYPFTR  124 (358)
Q Consensus       118 ~~~P~~~  124 (358)
                      .++|+..
T Consensus        71 ~~~PT~~   77 (100)
T cd02999          71 VGFPTIL   77 (100)
T ss_pred             eecCEEE
Confidence            9999754

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=99.40  E-value=1.1e-12  Score=126.06  Aligned_cols=96  Identities=15%  Similarity=0.227  Sum_probs=75.4

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-----CChhHHHHHH
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHF   96 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-----~~~~~~~~~~   96 (358)
                      -++| +.+.+|. ++++  +||+|+|+|||+||++|+.++|.|.+++++++..+  ++|+.|+.+     .+...+.++.
T Consensus        38 lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~--v~VI~Vs~~~~~~e~~~~~~~~~~  113 (521)
T PRK14018         38 LSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWY  113 (521)
T ss_pred             CCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEecccccccccHHHHHHHH
Confidence            3455 8899998 8887  79999999999999999999999999999987655  889888863     2334555555


Q ss_pred             hhCCC---cccccccceeeeccccCCCCcc
Q 018266           97 KSSDG---TLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        97 ~~~~~---~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      .....   .++.+....+.+.|+|.++|++
T Consensus       114 ~~~~y~~~pV~~D~~~~lak~fgV~giPTt  143 (521)
T PRK14018        114 AGLDYPKLPVLTDNGGTLAQSLNISVYPSW  143 (521)
T ss_pred             HhCCCcccceeccccHHHHHHcCCCCcCeE
Confidence            44322   3455556688999999999975

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.38  E-value=6.3e-13  Score=102.78  Aligned_cols=62  Identities=11%  Similarity=0.169  Sum_probs=51.6

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceee-eccccC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLI-EDYGAD  118 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~gi~  118 (358)
                      .++++++|.||||||+||+.++|.|+++++.+++.   +.++.|++|.+.                    .++ ++|+|.
T Consensus        27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~---v~~~~Vd~d~~~--------------------~l~~~~~~I~   83 (113)
T cd03006          27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ---VLFVAINCWWPQ--------------------GKCRKQKHFF   83 (113)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCh--------------------HHHHHhcCCc
Confidence            35799999999999999999999999999999654   677777777554                    467 589999


Q ss_pred             CCCcch
Q 018266          119 AYPFTR  124 (358)
Q Consensus       119 ~~P~~~  124 (358)
                      +||+..
T Consensus        84 ~~PTl~   89 (113)
T cd03006          84 YFPVIH   89 (113)
T ss_pred             ccCEEE
Confidence            999743

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PRK10996 thioredoxin 2; Provisional

Probab=99.38  E-value=4.5e-12  Score=102.32  Aligned_cols=71  Identities=27%  Similarity=0.579  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++.    .++.++.|+++..                       ..++++|+
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~  103 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERS----GKVRFVKVNTEAE-----------------------RELSARFR  103 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEeCCCC-----------------------HHHHHhcC
Confidence            47899999999999999999999999998876    4567777766643                       67899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus       104 V~~~Ptlii~-~~G~~v~~  121 (139)
T PRK10996        104 IRSIPTIMIF-KNGQVVDM  121 (139)
T ss_pred             CCccCEEEEE-ECCEEEEE
Confidence            9999999998 68998876

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=99.38  E-value=1.1e-12  Score=102.60  Aligned_cols=76  Identities=21%  Similarity=0.482  Sum_probs=58.2

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      +..++|+|+|+||++||++|+.+.|.+.+......    ....++.|.+|.+.                      ....+
T Consensus        15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~----~~~~fv~v~vd~~~----------------------~~~~~   68 (117)
T cd02959          15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE----LSHNFVMVNLEDDE----------------------EPKDE   68 (117)
T ss_pred             HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh----hcCcEEEEEecCCC----------------------Cchhh
Confidence            34468999999999999999999999988766543    22346667776542                      23345


Q ss_pred             HcCCCc--eeeEEEECCCCcEEec
Q 018266          246 IFNIKG--IPALVLIGPDGKTIST  267 (358)
Q Consensus       246 ~~~v~~--~P~~~lid~~G~v~~~  267 (358)
                      .|++.+  +|+++++|++|+++.+
T Consensus        69 ~~~~~g~~vPt~~f~~~~Gk~~~~   92 (117)
T cd02959          69 EFSPDGGYIPRILFLDPSGDVHPE   92 (117)
T ss_pred             hcccCCCccceEEEECCCCCCchh
Confidence            778876  9999999999999875

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=99.38  E-value=2e-12  Score=100.80  Aligned_cols=64  Identities=23%  Similarity=0.449  Sum_probs=52.0

Q ss_pred             ccCCCCc-eecccCC-CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           28 LLSRQGK-VPLSSCG-GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        28 l~~~~g~-v~l~~~~-gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +.+.+|+ +++++++ ||+++|+||++||++|+..+|.+.++++++...   +.++.++ +.+.+...++
T Consensus         5 l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~---~~vi~v~-~~~~~~~~~~   70 (114)
T cd02967           5 LTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADW---LDVVLAS-DGEKAEHQRF   70 (114)
T ss_pred             eecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCC---cEEEEEe-CCCHHHHHHH
Confidence            6778999 9999997 999999999999999999999999998887542   7777665 5454444444

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>TIGR02740 TraF-like TraF-like protein

Probab=99.37  E-value=1.9e-12  Score=115.90  Aligned_cols=88  Identities=23%  Similarity=0.354  Sum_probs=69.7

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  240 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      +...+++++|+++||+||++||++|+.+.|.|++++++|+      +.|++|++|....           ..+|... .+
T Consensus       157 ~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-----------~~fp~~~-~d  218 (271)
T TIGR02740       157 KDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG------IEVLPVSVDGGPL-----------PGFPNAR-PD  218 (271)
T ss_pred             HHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-----------ccCCccc-CC
Confidence            3466788899999999999999999999999999999874      6899999987532           1133332 23


Q ss_pred             HHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          241 QDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       241 ~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                      ..++++|||.++|+++|+|++|+.+.
T Consensus       219 ~~la~~~gV~~vPtl~Lv~~~~~~v~  244 (271)
T TIGR02740       219 AGQAQQLKIRTVPAVFLADPDPNQFT  244 (271)
T ss_pred             HHHHHHcCCCcCCeEEEEECCCCEEE
Confidence            56789999999999999999654443

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.37  E-value=4.1e-12  Score=104.49  Aligned_cols=117  Identities=16%  Similarity=0.205  Sum_probs=92.7

Q ss_pred             hhhccCCcee-cCC---Cceeeecc-cCCcEEE-EEEeccCCcccHhh-HHHHHHHHHHhhcccCCce-EEEEEeCCCCH
Q 018266          147 LAIEGRDYVL-SRD---HRKITVSE-LAGKTIG-LYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCF-EVVLVSTDRDH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~---g~~~~l~~-~~~k~vl-v~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~  218 (358)
                      +|.++|+|.+ +.+   |+.+++++ ++||+++ ++|++.||+.|..+ ++.|.+.++++.+   .+. .|++|+.|...
T Consensus         1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~---~g~~~V~~iS~D~~~   77 (155)
T cd03013           1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKA---KGVDEVICVSVNDPF   77 (155)
T ss_pred             CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHH---CCCCEEEEEECCCHH
Confidence            3778999998 553   89999999 5886554 55568999999999 9999999999986   777 69999999643


Q ss_pred             HHHHHhhhcCCc-cccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~  268 (358)
                       ...++...+.. ..+|+..|....+++.||+.           ..+.+++|| +|+|++..
T Consensus        78 -~~~~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~  137 (155)
T cd03013          78 -VMKAWGKALGAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLF  137 (155)
T ss_pred             -HHHHHHHhhCCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEE
Confidence             34555555544 46888888899999999983           146789999 69999763

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=99.37  E-value=2.5e-12  Score=99.43  Aligned_cols=68  Identities=13%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH-HHc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC-RIF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~  247 (358)
                      .+++++|.|||+||++|+.+.|.+.+++++++    +.+.++.|++|.+                       ..++ ++|
T Consensus        28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~----~~v~~~~Vd~d~~-----------------------~~l~~~~~   80 (113)
T cd03006          28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLS----DQVLFVAINCWWP-----------------------QGKCRKQK   80 (113)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------hHHHHHhc
Confidence            56899999999999999999999999999997    4477777877754                       4666 689


Q ss_pred             CCCceeeEEEECCCCcE
Q 018266          248 NIKGIPALVLIGPDGKT  264 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v  264 (358)
                      +|.++||++++ ++|+.
T Consensus        81 ~I~~~PTl~lf-~~g~~   96 (113)
T cd03006          81 HFFYFPVIHLY-YRSRG   96 (113)
T ss_pred             CCcccCEEEEE-ECCcc
Confidence            99999999999 67664

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=99.37  E-value=2.8e-12  Score=99.65  Aligned_cols=95  Identities=22%  Similarity=0.463  Sum_probs=65.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .||+++++||++||++|+.+.+.+.+..+-... .+.++.++.+.++.+.+.........+.   +.......++.+.|+
T Consensus         4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~   79 (112)
T PF13098_consen    4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARY-LKDDFQVIFVNIDDSRDESEAVLDFDGQ---KNVRLSNKELAQRYG   79 (112)
T ss_dssp             TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCE-EHCECEEEECESHSHHHHHHHHHSHTCH---SSCHHHHHHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcccccccccccccc---hhhhHHHHHHHHHcC
Confidence            579999999999999999999988765442111 1256888889888765443333332211   222234568999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++|++|+++.+
T Consensus        80 v~gtPt~~~~d~~G~~v~~   98 (112)
T PF13098_consen   80 VNGTPTIVFLDKDGKIVYR   98 (112)
T ss_dssp             --SSSEEEECTTTSCEEEE
T ss_pred             CCccCEEEEEcCCCCEEEE
Confidence            9999999999999998876

...

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=99.37  E-value=1.6e-12  Score=97.92  Aligned_cols=80  Identities=31%  Similarity=0.677  Sum_probs=62.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--cc-cc--cccceeeeccc
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--TL-IE--EDLIGLIEDYG  116 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--~~-~~--~~~~~l~~~~g  116 (358)
                      ||+++|+||++||++|++..|.+.++++++++ +.++++|+|+.|.+.+.++++......  .. ..  +....+.+.|+
T Consensus         1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (95)
T PF13905_consen    1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG   79 (95)
T ss_dssp             TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence            79999999999999999999999999999995 455999999999998899999888622  22 11  22346778888


Q ss_pred             cCCCCc
Q 018266          117 ADAYPF  122 (358)
Q Consensus       117 i~~~P~  122 (358)
                      +.+.|+
T Consensus        80 i~~iP~   85 (95)
T PF13905_consen   80 INGIPT   85 (95)
T ss_dssp             -TSSSE
T ss_pred             CCcCCE
Confidence            888885

...

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=99.37  E-value=1.9e-12  Score=102.99  Aligned_cols=93  Identities=20%  Similarity=0.267  Sum_probs=73.2

Q ss_pred             ccc-ccCCCC--c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC
Q 018266           25 VEF-LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD  100 (358)
Q Consensus        25 ~~~-l~~~~g--~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (358)
                      ++| +.+.+|  . +++++++||+++|+||++||++|+.++|.+.++++.+   +  ++++.|+.+.+...+.++.....
T Consensus         4 p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~--~~vv~v~~~~~~~~~~~~~~~~~   78 (127)
T cd03010           4 PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---R--VPIYGINYKDNPENALAWLARHG   78 (127)
T ss_pred             CCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---C--cEEEEEECCCCHHHHHHHHHhcC
Confidence            445 667777  6 9999999999999999999999999999999987764   2  88999998877777777765533


Q ss_pred             C---cccccccceeeeccccCCCCc
Q 018266          101 G---TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 ~---~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .   .++.+....+++.|++.++|.
T Consensus        79 ~~~~~~~~D~~~~~~~~~~v~~~P~  103 (127)
T cd03010          79 NPYAAVGFDPDGRVGIDLGVYGVPE  103 (127)
T ss_pred             CCCceEEECCcchHHHhcCCCCCCe
Confidence            2   234455567788888888774

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.35  E-value=4.2e-12  Score=103.25  Aligned_cols=73  Identities=18%  Similarity=0.391  Sum_probs=63.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.+.++++++..   .++.++.|++|..                       .+++++|+
T Consensus        46 ~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~-----------------------~~la~~~~   99 (152)
T cd02962          46 KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN---NNLKFGKIDIGRF-----------------------PNVAEKFR   99 (152)
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence            457999999999999999999999999999864   5688888988875                       57888888


Q ss_pred             CCc------eeeEEEECCCCcEEecC
Q 018266          249 IKG------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       249 v~~------~P~~~lid~~G~v~~~~  268 (358)
                      |.+      +||++++ ++|+.+.+.
T Consensus       100 V~~~~~v~~~PT~ilf-~~Gk~v~r~  124 (152)
T cd02962         100 VSTSPLSKQLPTIILF-QGGKEVARR  124 (152)
T ss_pred             ceecCCcCCCCEEEEE-ECCEEEEEE
Confidence            877      9999999 789888764

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=99.35  E-value=2.8e-12  Score=99.89  Aligned_cols=68  Identities=22%  Similarity=0.384  Sum_probs=57.1

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.|.++++++..     +.++-|..+  .                     . .++++|+|
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-----v~f~~vd~~--~---------------------~-~l~~~~~i   74 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-----TKFVKINAE--K---------------------A-FLVNYLDI   74 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-----cEEEEEEch--h---------------------h-HHHHhcCC
Confidence            58999999999999999999999999999853     445444443  2                     3 78999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++||++++ ++|+.+.+
T Consensus        75 ~~~Pt~~~f-~~G~~v~~   91 (113)
T cd02957          75 KVLPTLLVY-KNGELIDN   91 (113)
T ss_pred             CcCCEEEEE-ECCEEEEE
Confidence            999999999 88988876

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.35  E-value=2e-12  Score=102.83  Aligned_cols=88  Identities=22%  Similarity=0.295  Sum_probs=65.9

Q ss_pred             Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-----CChhHHHHHHhhCCC--ccc
Q 018266           33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-----HDENGFEEHFKSSDG--TLI  104 (358)
Q Consensus        33 g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-----~~~~~~~~~~~~~~~--~~~  104 (358)
                      |+ +++++++||+++|+||++||++|+..+|.|.++++++++.+  +.++.|+.+     .+.+..+++..+...  .++
T Consensus        13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~   90 (126)
T cd03012          13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDG--LVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA   90 (126)
T ss_pred             CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCC--eEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence            56 99999999999999999999999999999999999998766  889999763     234455555444222  334


Q ss_pred             ccccceeeeccccCCCCc
Q 018266          105 EEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       105 ~~~~~~l~~~~gi~~~P~  122 (358)
                      .+....+.+.|++..+|.
T Consensus        91 ~D~~~~~~~~~~v~~~P~  108 (126)
T cd03012          91 NDNDYATWRAYGNQYWPA  108 (126)
T ss_pred             ECCchHHHHHhCCCcCCe
Confidence            444445566666666663

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.34  E-value=3.7e-12  Score=96.85  Aligned_cols=69  Identities=23%  Similarity=0.369  Sum_probs=58.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|.|+++||++|+.+.|.|.+++++|+    +.+.++.|.+|.                       ..++++.|+
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~----~~~~f~kVDVDe-----------------------v~dva~~y~   65 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLS----KMASIYLVDVDK-----------------------VPVYTQYFD   65 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHcc----CceEEEEEeccc-----------------------cHHHHHhcC
Confidence            57999999999999999999999999999996    236666677775                       478999999


Q ss_pred             CCceeeEEEECCCCcEE
Q 018266          249 IKGIPALVLIGPDGKTI  265 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~  265 (358)
                      |.+.||++++ .+|+-.
T Consensus        66 I~amPtfvff-kngkh~   81 (114)
T cd02986          66 ISYIPSTIFF-FNGQHM   81 (114)
T ss_pred             ceeCcEEEEE-ECCcEE
Confidence            9999999999 555543

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=99.34  E-value=1.3e-12  Score=100.00  Aligned_cols=64  Identities=17%  Similarity=0.299  Sum_probs=51.4

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      +.+||+|+|+|||+||++|+.++|.|+++++++ .   ++.++.|++|.+...                 ..++++|+|.
T Consensus        12 ~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~-----------------~~l~~~~~V~   70 (103)
T cd02985          12 KAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDST-----------------MELCRREKII   70 (103)
T ss_pred             HcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHH-----------------HHHHHHcCCC
Confidence            346899999999999999999999999999988 2   267888887765321                 2567888999


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      ++|+.
T Consensus        71 ~~Pt~   75 (103)
T cd02985          71 EVPHF   75 (103)
T ss_pred             cCCEE
Confidence            99963

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=5.7e-13  Score=105.25  Aligned_cols=60  Identities=28%  Similarity=0.559  Sum_probs=51.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+.+|+|+|||+||+||+.+.|.++++.+++...   +.+..|+.|...                    +++.+|+|.+.
T Consensus        60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~---~k~~kvdtD~~~--------------------ela~~Y~I~av  116 (150)
T KOG0910|consen   60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK---FKLYKVDTDEHP--------------------ELAEDYEISAV  116 (150)
T ss_pred             cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe---EEEEEEcccccc--------------------chHhhcceeee
Confidence            4689999999999999999999999999999665   778777777654                    67888888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       117 Ptv  119 (150)
T KOG0910|consen  117 PTV  119 (150)
T ss_pred             eEE
Confidence            864

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.33  E-value=1.2e-11  Score=94.22  Aligned_cols=68  Identities=22%  Similarity=0.416  Sum_probs=57.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +|+ ++|.||++||++|+.+.|.+.++++.++.   .++.+..|+++..                       ..++++|+
T Consensus        16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------------~~~~~~~~   68 (101)
T cd02994          16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDD---LGINVAKVDVTQE-----------------------PGLSGRFF   68 (101)
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc---CCeEEEEEEccCC-----------------------HhHHHHcC
Confidence            455 68999999999999999999999987753   4677777777653                       56889999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++||++++ ++|++
T Consensus        69 i~~~Pt~~~~-~~g~~   83 (101)
T cd02994          69 VTALPTIYHA-KDGVF   83 (101)
T ss_pred             CcccCEEEEe-CCCCE
Confidence            9999999998 88875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.33  E-value=1.3e-12  Score=99.62  Aligned_cols=61  Identities=16%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++++++|+||++||++|+++.|.|++++++++..   +.++.|++|...                    .++++|+|+.
T Consensus        16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~   72 (101)
T cd03003          16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV---IRIGAVNCGDDR--------------------MLCRSQGVNS   72 (101)
T ss_pred             cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc---eEEEEEeCCccH--------------------HHHHHcCCCc
Confidence            35699999999999999999999999999998753   778888887654                    4688899999


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      ||+.
T Consensus        73 ~Pt~   76 (101)
T cd03003          73 YPSL   76 (101)
T ss_pred             cCEE
Confidence            9964

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.33  E-value=1.2e-11  Score=96.30  Aligned_cols=77  Identities=26%  Similarity=0.485  Sum_probs=59.7

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.|.+.++++++++ ....+.+..++++.+.                     ...+++.|++
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~v~~~~vd~~~~~---------------------~~~~~~~~~i   76 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRK-WRPVVRVAAVDCADEE---------------------NVALCRDFGV   76 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHh-cCCceEEEEEeccchh---------------------hHHHHHhCCC
Confidence            47999999999999999999999999999874 2234666666654432                     4678999999


Q ss_pred             CceeeEEEECCCCcEEecCc
Q 018266          250 KGIPALVLIGPDGKTISTNG  269 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g  269 (358)
                      +++|+++++ ++|+.....|
T Consensus        77 ~~~Pt~~lf-~~~~~~~~~~   95 (114)
T cd02992          77 TGYPTLRYF-PPFSKEATDG   95 (114)
T ss_pred             CCCCEEEEE-CCCCccCCCC
Confidence            999999999 5555544443

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.33  E-value=5.9e-12  Score=96.51  Aligned_cols=72  Identities=24%  Similarity=0.421  Sum_probs=60.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|.||++||++|+.+.|.+.+++++++    ..+.+..|+++..                       ..++++|+
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   70 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK----GKVKVGSVDCQKY-----------------------ESLCQQAN   70 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCch-----------------------HHHHHHcC
Confidence            35799999999999999999999999999986    4577777777753                       67899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++..+|+.+.+
T Consensus        71 i~~~Pt~~~~~~g~~~~~~   89 (104)
T cd03004          71 IRAYPTIRLYPGNASKYHS   89 (104)
T ss_pred             CCcccEEEEEcCCCCCceE
Confidence            9999999999665465544

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=99.33  E-value=1.7e-11  Score=95.30  Aligned_cols=70  Identities=19%  Similarity=0.259  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+|+||++||++|+.+.|.|.++.+++.     ++.++-|.++..                       ..++++|+
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-----~i~f~~Vd~~~~-----------------------~~l~~~~~   72 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-----ETKFIKVNAEKA-----------------------PFLVEKLN   72 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-----CCEEEEEEcccC-----------------------HHHHHHCC
Confidence            35799999999999999999999999999885     356777766653                       67999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus        73 v~~vPt~l~f-k~G~~v~~   90 (113)
T cd02989          73 IKVLPTVILF-KNGKTVDR   90 (113)
T ss_pred             CccCCEEEEE-ECCEEEEE
Confidence            9999999999 78888866

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=99.32  E-value=2.4e-12  Score=98.75  Aligned_cols=59  Identities=14%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++|+|.|||+||+||+.|.|.|+++++++.+.   +.++.|++|...                    +++.+|+|.+.
T Consensus        13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~---v~f~kVDvD~~~--------------------~la~~~~V~~i   69 (114)
T cd02954          13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF---AVIYLVDIDEVP--------------------DFNKMYELYDP   69 (114)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc---eEEEEEECCCCH--------------------HHHHHcCCCCC
Confidence            4789999999999999999999999999998654   567777777655                    57788888888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        70 PT   71 (114)
T cd02954          70 PT   71 (114)
T ss_pred             CE
Confidence            85

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.32  E-value=9.1e-12  Score=96.25  Aligned_cols=70  Identities=27%  Similarity=0.557  Sum_probs=60.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|.||++||++|+.+.|.+.++++++.    ..+.++.|+++.+.                     ...+++.|+
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~---------------------~~~~~~~~~   71 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD----GLVQVAAVDCDEDK---------------------NKPLCGKYG   71 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc----CCceEEEEecCccc---------------------cHHHHHHcC
Confidence            46889999999999999999999999999886    55788888888642                     367899999


Q ss_pred             CCceeeEEEECCCCc
Q 018266          249 IKGIPALVLIGPDGK  263 (358)
Q Consensus       249 v~~~P~~~lid~~G~  263 (358)
                      |.++|+++++++++.
T Consensus        72 i~~~Pt~~~~~~~~~   86 (109)
T cd03002          72 VQGFPTLKVFRPPKK   86 (109)
T ss_pred             CCcCCEEEEEeCCCc
Confidence            999999999977763

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=99.32  E-value=6.7e-12  Score=102.41  Aligned_cols=87  Identities=30%  Similarity=0.528  Sum_probs=71.1

Q ss_pred             cCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--ccc
Q 018266           29 LSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--TLI  104 (358)
Q Consensus        29 ~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--~~~  104 (358)
                      ++.+|+ +++++++||+++|.||++ |||+|+..+|.+.++++.+++.+  ++++.|+.+.+.. ..++..+...  .++
T Consensus        14 ~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~--v~~v~v~~~~~~~-~~~~~~~~~~~~~~~   90 (146)
T PF08534_consen   14 LDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKG--VDVVGVSSDDDPP-VREFLKKYGINFPVL   90 (146)
T ss_dssp             EETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--CEEEEEEESSSHH-HHHHHHHTTTTSEEE
T ss_pred             ecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCc--eEEEEecccCCHH-HHHHHHhhCCCceEE
Confidence            459999 999999999999999999 99999999999999999988887  8999999987766 5555555222  344


Q ss_pred             ccccceeeeccccC
Q 018266          105 EEDLIGLIEDYGAD  118 (358)
Q Consensus       105 ~~~~~~l~~~~gi~  118 (358)
                      .+....+.+.|++.
T Consensus        91 ~D~~~~~~~~~~~~  104 (146)
T PF08534_consen   91 SDPDGALAKALGVT  104 (146)
T ss_dssp             EETTSHHHHHTTCE
T ss_pred             echHHHHHHHhCCc
Confidence            45556677777766

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=99.32  E-value=7.2e-12  Score=105.26  Aligned_cols=95  Identities=26%  Similarity=0.550  Sum_probs=77.0

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--  101 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--  101 (358)
                      ++ +.+.+|+ +++++++||+++|+||++||++|+...|.+.++++++.+.+  ++++.|++|.+.+.+.++......  
T Consensus        43 ~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vi~i~~d~~~~~~~~~~~~~~~~~  120 (173)
T PRK03147         43 NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKG--VEIIAVNVDETELAVKNFVNRYGLTF  120 (173)
T ss_pred             CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEEcCCCHHHHHHHHHHhCCCc
Confidence            44 7889999 99999999999999999999999999999999999998765  899999999887776666655222  


Q ss_pred             cccccccceeeeccccCCCCc
Q 018266          102 TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 ~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .++.+....+.+.|++..+|.
T Consensus       121 ~~~~d~~~~~~~~~~v~~~P~  141 (173)
T PRK03147        121 PVAIDKGRQVIDAYGVGPLPT  141 (173)
T ss_pred             eEEECCcchHHHHcCCCCcCe
Confidence            344444556777788777774

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=99.32  E-value=1.7e-11  Score=95.51  Aligned_cols=72  Identities=11%  Similarity=0.177  Sum_probs=59.8

Q ss_pred             CcEEEEEEeccCCcc--cH--hhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          170 GKTIGLYFGAHWCPP--CR--SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~--C~--~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ..++|++||++||++  |+  .+.|.+.+++.++-.  ..++.|+-|++|..                       ..+++
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~--~~~v~~~kVD~d~~-----------------------~~La~   81 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLE--DKGIGFGLVDSKKD-----------------------AKVAK   81 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhh--cCCCEEEEEeCCCC-----------------------HHHHH
Confidence            369999999999988  99  778889999888721  15688888888864                       68999


Q ss_pred             HcCCCceeeEEEECCCCcEEec
Q 018266          246 IFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|+|+++||+++| ++|+++..
T Consensus        82 ~~~I~~iPTl~lf-k~G~~v~~  102 (120)
T cd03065          82 KLGLDEEDSIYVF-KDDEVIEY  102 (120)
T ss_pred             HcCCccccEEEEE-ECCEEEEe
Confidence            9999999999999 78887643

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=99.31  E-value=1.3e-11  Score=93.98  Aligned_cols=71  Identities=23%  Similarity=0.364  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccC--CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          169 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       169 ~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      .|.+++|.||++|  ||+|+.+.|.|.+++++|.    +.+.++-|.+|..                       ..++.+
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~----~~v~f~kVdid~~-----------------------~~la~~   78 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFP----GRFRAAVVGRADE-----------------------QALAAR   78 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCC----CcEEEEEEECCCC-----------------------HHHHHH
Confidence            4678999999997  9999999999999999997    4566777777764                       689999


Q ss_pred             cCCCceeeEEEECCCCcEEec
Q 018266          247 FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~~  267 (358)
                      |+|+++||++++ ++|+++.+
T Consensus        79 f~V~sIPTli~f-kdGk~v~~   98 (111)
T cd02965          79 FGVLRTPALLFF-RDGRYVGV   98 (111)
T ss_pred             cCCCcCCEEEEE-ECCEEEEE
Confidence            999999999999 88998877

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.31  E-value=2.2e-11  Score=93.28  Aligned_cols=70  Identities=21%  Similarity=0.360  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|.||++||++|+.+.|.|.+++++++. .+.++.+..++++..                       ..++++|+
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~   69 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKS-SGSPVRVGKLDATAY-----------------------SSIASEFG   69 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHh-cCCcEEEEEEECccC-----------------------HhHHhhcC
Confidence            457999999999999999999999999999864 123456666665542                       57889999


Q ss_pred             CCceeeEEEECCCCc
Q 018266          249 IKGIPALVLIGPDGK  263 (358)
Q Consensus       249 v~~~P~~~lid~~G~  263 (358)
                      |.++|+++++ .+|.
T Consensus        70 I~~~Pt~~l~-~~~~   83 (104)
T cd03000          70 VRGYPTIKLL-KGDL   83 (104)
T ss_pred             CccccEEEEE-cCCC
Confidence            9999999999 4443

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=99.30  E-value=2.2e-11  Score=92.11  Aligned_cols=71  Identities=23%  Similarity=0.467  Sum_probs=61.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++++||++||+.|+.+.|.+.++.+++.    .++.++.++.|..                       .++.+.|+
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~----~~v~~~~id~d~~-----------------------~~l~~~~~   64 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFD----GAVHFVEIDIDED-----------------------QEIAEAAG   64 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence            46899999999999999999999999998886    4577777777654                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        65 v~~vPt~~i~-~~g~~v~~   82 (97)
T cd02949          65 IMGTPTVQFF-KDKELVKE   82 (97)
T ss_pred             CeeccEEEEE-ECCeEEEE
Confidence            9999999999 58988866

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.30  E-value=3e-11  Score=92.13  Aligned_cols=70  Identities=30%  Similarity=0.782  Sum_probs=60.7

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.|.++.+++.    .++.++.|..+..                       ..++++|+|
T Consensus        17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~v   69 (103)
T PF00085_consen   17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYK----DNVKFAKVDCDEN-----------------------KELCKKYGV   69 (103)
T ss_dssp             SSEEEEEEESTTSHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTS-----------------------HHHHHHTTC
T ss_pred             CCCEEEEEeCCCCCccccccceecccccccc----cccccchhhhhcc-----------------------chhhhccCC
Confidence            6899999999999999999999999999987    3677777777753                       689999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|+++++ .+|+.+.+
T Consensus        70 ~~~Pt~~~~-~~g~~~~~   86 (103)
T PF00085_consen   70 KSVPTIIFF-KNGKEVKR   86 (103)
T ss_dssp             SSSSEEEEE-ETTEEEEE
T ss_pred             CCCCEEEEE-ECCcEEEE
Confidence            999999999 66666654

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.30  E-value=9.6e-12  Score=96.19  Aligned_cols=71  Identities=15%  Similarity=0.447  Sum_probs=59.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-Hc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  247 (358)
                      ++|+++|.||++||++|+.+.|.+.++++++++   .++.++.|.+|.+.                      ..++. .|
T Consensus        20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~~----------------------~~~~~~~~   74 (109)
T cd02993          20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG---SNVKVAKFNADGEQ----------------------REFAKEEL   74 (109)
T ss_pred             cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECCccc----------------------hhhHHhhc
Confidence            478999999999999999999999999999974   56888888888631                      45555 59


Q ss_pred             CCCceeeEEEECCCCcE
Q 018266          248 NIKGIPALVLIGPDGKT  264 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v  264 (358)
                      +++++||+++++++|+.
T Consensus        75 ~v~~~Pti~~f~~~~~~   91 (109)
T cd02993          75 QLKSFPTILFFPKNSRQ   91 (109)
T ss_pred             CCCcCCEEEEEcCCCCC
Confidence            99999999999777653

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.29  E-value=1.1e-11  Score=94.51  Aligned_cols=71  Identities=23%  Similarity=0.566  Sum_probs=58.6

Q ss_pred             EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018266          172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  251 (358)
Q Consensus       172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~  251 (358)
                      .++|.||++||++|+.+.|.+.+++++++. ...++.++.|.++..                       ..++++|+|.+
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~~~~~~~v~~   73 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNN-ENPSVKIAKVDCTQH-----------------------RELCSEFQVRG   73 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhc-cCCcEEEEEEECCCC-----------------------hhhHhhcCCCc
Confidence            599999999999999999999999999873 123677777766643                       57889999999


Q ss_pred             eeeEEEECCCCcEEec
Q 018266          252 IPALVLIGPDGKTIST  267 (358)
Q Consensus       252 ~P~~~lid~~G~v~~~  267 (358)
                      +|+++++ ++|+.+.+
T Consensus        74 ~Pt~~~~-~~g~~~~~   88 (102)
T cd03005          74 YPTLLLF-KDGEKVDK   88 (102)
T ss_pred             CCEEEEE-eCCCeeeE
Confidence            9999999 77776544

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=99.28  E-value=5.5e-12  Score=97.81  Aligned_cols=63  Identities=19%  Similarity=0.417  Sum_probs=52.2

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      ...|++++|+||||||++|+.+.|.|+++++++...+  +.++.|++|.+.                    .++.+++|.
T Consensus        21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~~--------------------~l~~~~~V~   78 (111)
T cd02963          21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHER--------------------RLARKLGAH   78 (111)
T ss_pred             ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEeccccH--------------------HHHHHcCCc
Confidence            3468999999999999999999999999999997543  777777777654                    457788888


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      ++|+.
T Consensus        79 ~~Pt~   83 (111)
T cd02963          79 SVPAI   83 (111)
T ss_pred             cCCEE
Confidence            88864

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.28  E-value=4.2e-11  Score=95.49  Aligned_cols=71  Identities=15%  Similarity=0.323  Sum_probs=59.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+|+|||+||+||+.+.|.|.+++++++    +.+.|+-|++|..                       .+++..|+
T Consensus        22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~----~~~~~~kVDVDe~-----------------------~dla~~y~   74 (142)
T PLN00410         22 EERLVVIRFGHDWDETCMQMDEVLASVAETIK----NFAVIYLVDITEV-----------------------PDFNTMYE   74 (142)
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999986    4467777888864                       68999999


Q ss_pred             CCceeeEE-EECCCCc-EEec
Q 018266          249 IKGIPALV-LIGPDGK-TIST  267 (358)
Q Consensus       249 v~~~P~~~-lid~~G~-v~~~  267 (358)
                      |++.|+++ ++ ++|+ .+.+
T Consensus        75 I~~~~t~~~ff-k~g~~~vd~   94 (142)
T PLN00410         75 LYDPCTVMFFF-RNKHIMIDL   94 (142)
T ss_pred             ccCCCcEEEEE-ECCeEEEEE
Confidence            99887776 66 7887 4544

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.27  E-value=2.6e-11  Score=93.57  Aligned_cols=72  Identities=19%  Similarity=0.314  Sum_probs=58.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      .+++++|.||++||++|+.+.|.+.++++++++..  ...+.++.|.+|..                       ..++++
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----------------------~~l~~~   73 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----------------------SDIADR   73 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----------------------HHHHHh
Confidence            35799999999999999999999999999886311  12466666766653                       679999


Q ss_pred             cCCCceeeEEEECCCCcE
Q 018266          247 FNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v  264 (358)
                      |+|+++|+++++ ++|++
T Consensus        74 ~~v~~~Ptl~~~-~~g~~   90 (108)
T cd02996          74 YRINKYPTLKLF-RNGMM   90 (108)
T ss_pred             CCCCcCCEEEEE-eCCcC
Confidence            999999999999 78874

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=99.27  E-value=1.6e-11  Score=104.23  Aligned_cols=99  Identities=23%  Similarity=0.289  Sum_probs=71.1

Q ss_pred             eccccc-Cccc-ccCCC--Cc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           18 TVLASE-GVEF-LLSRQ--GK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        18 ~~l~~~-~~~~-l~~~~--g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      +...+. .++| +.+.+  |+ ++++.+ +||+++|.|||+||++|+..+|.+.++++    .+  ++++.|+.+.+.+.
T Consensus        38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~--~~vi~v~~~~~~~~  111 (185)
T PRK15412         38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QG--IRVVGMNYKDDRQK  111 (185)
T ss_pred             hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cC--CEEEEEECCCCHHH
Confidence            334433 3455 66666  46 777665 79999999999999999999999988754    34  88999998877766


Q ss_pred             HHHHHhhCCC---cccccccceeeeccccCCCCc
Q 018266           92 FEEHFKSSDG---TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        92 ~~~~~~~~~~---~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ..++..+...   .++.+....+...||+.+.|+
T Consensus       112 ~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~  145 (185)
T PRK15412        112 AISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE  145 (185)
T ss_pred             HHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCe
Confidence            6666655322   234455556777888888874

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=99.27  E-value=2.8e-11  Score=92.17  Aligned_cols=70  Identities=23%  Similarity=0.467  Sum_probs=58.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|.||++||++|+.+.+.+.++++.++.  ..++.++.+.++.                       ...+.++|+
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~-----------------------~~~~~~~~~   66 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKG--DPDIVLAKVDATA-----------------------EKDLASRFG   66 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhcc--CCceEEEEEEccc-----------------------hHHHHHhCC
Confidence            678999999999999999999999999998873  1256666666654                       368889999


Q ss_pred             CCceeeEEEECCCCc
Q 018266          249 IKGIPALVLIGPDGK  263 (358)
Q Consensus       249 v~~~P~~~lid~~G~  263 (358)
                      +.++|+++++++++.
T Consensus        67 i~~~P~~~~~~~~~~   81 (102)
T TIGR01126        67 VSGFPTIKFFPKGKK   81 (102)
T ss_pred             CCcCCEEEEecCCCc
Confidence            999999999977776

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>PHA02278 thioredoxin-like protein

Probab=99.26  E-value=5.7e-12  Score=95.82  Aligned_cols=63  Identities=8%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++|+|+|||+||+||+.+.|.|+++++++...   ..++.|++|.++..                ...++++|+|.+.
T Consensus        13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~---~~~~~vdvd~~~~d----------------~~~l~~~~~I~~i   73 (103)
T PHA02278         13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIK---KPILTLNLDAEDVD----------------REKAVKLFDIMST   73 (103)
T ss_pred             CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCC---ceEEEEECCccccc----------------cHHHHHHCCCccc
Confidence            5899999999999999999999999998875433   56888888865200                0135677777777


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        74 PT   75 (103)
T PHA02278         74 PV   75 (103)
T ss_pred             cE
Confidence            75

>PTZ00056 glutathione peroxidase; Provisional

Probab=99.26  E-value=1.4e-11  Score=105.48  Aligned_cols=60  Identities=25%  Similarity=0.388  Sum_probs=55.9

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+| +.+.+|+ +++++++||+|+|.|||+||++|+..+|.|.++++++++.|  ++|+.|+++
T Consensus        20 pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g--~~vvgv~~~   81 (199)
T PTZ00056         20 YDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLG--LEILAFPTS   81 (199)
T ss_pred             CceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCc--eEEEEecch
Confidence            455 7889999 99999999999999999999999999999999999999887  999999985

>PLN02412 probable glutathione peroxidase

Probab=99.26  E-value=1.4e-11  Score=102.64  Aligned_cols=60  Identities=22%  Similarity=0.408  Sum_probs=56.1

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.|  ++|+.|++|
T Consensus        10 pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g--~~vvgv~~~   71 (167)
T PLN02412         10 YDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQG--FEILAFPCN   71 (167)
T ss_pred             CceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCC--cEEEEeccc
Confidence            455 7889999 99999999999999999999999999999999999999887  999999986

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=99.26  E-value=1.8e-11  Score=96.88  Aligned_cols=93  Identities=30%  Similarity=0.566  Sum_probs=75.1

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS   99 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (358)
                      +-++| +++.+|+ +++++++||+++|.||+. ||++|+..++.|.++++++++.+  ++++.|+.|..+ ...++....
T Consensus         4 ~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~--~~vi~is~d~~~-~~~~~~~~~   80 (124)
T PF00578_consen    4 KAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKG--VQVIGISTDDPE-EIKQFLEEY   80 (124)
T ss_dssp             BGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSSHH-HHHHHHHHH
T ss_pred             CCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccce--EEeeeccccccc-chhhhhhhh
Confidence            33566 8899999 999999999999999999 99999999999999999999877  999999997544 445554442


Q ss_pred             --CCcccccccceeeeccccC
Q 018266          100 --DGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus       100 --~~~~~~~~~~~l~~~~gi~  118 (358)
                        ...++.+....+++.|++.
T Consensus        81 ~~~~~~~~D~~~~~~~~~~~~  101 (124)
T PF00578_consen   81 GLPFPVLSDPDGELAKAFGIE  101 (124)
T ss_dssp             TCSSEEEEETTSHHHHHTTCE
T ss_pred             ccccccccCcchHHHHHcCCc
Confidence              3355666666777777775

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=99.26  E-value=7.9e-11  Score=98.78  Aligned_cols=120  Identities=20%  Similarity=0.387  Sum_probs=94.4

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC---HHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---HKEF  221 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---~~~~  221 (358)
                      .....|+|.+ +.+|+.+++++++||+++|+|..+.||. |...+..|.++.+++.. .+.++++++|++|+.   ++..
T Consensus        28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~-~~~~v~~v~ISvDP~~DTp~~L  106 (174)
T PF02630_consen   28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGE-EGKDVQFVFISVDPERDTPEVL  106 (174)
T ss_dssp             TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHH-TTTTEEEEEEESSTTTC-HHHH
T ss_pred             CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhh-ccCceEEEEEEeCCCCCCHHHH
Confidence            3456788999 9999999999999999999999999987 99999999999999986 357899999999975   4556


Q ss_pred             HHhhhcC--CccccccCchhHHHHHHHcCCCc----------------eeeEEEECCCCcEEec
Q 018266          222 DLNHSIM--PWLAIPYEDRARQDLCRIFNIKG----------------IPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~~----------------~P~~~lid~~G~v~~~  267 (358)
                      .++.+.+  .|..+....+....+.+.|++..                ...++|||++|+++..
T Consensus       107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~  170 (174)
T PF02630_consen  107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAI  170 (174)
T ss_dssp             HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEE
T ss_pred             HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEE
Confidence            6666543  45555566666778888888642                2368999999999865

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=99.24  E-value=3.8e-11  Score=92.98  Aligned_cols=93  Identities=29%  Similarity=0.503  Sum_probs=73.3

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-hhHHHHHHhhCCC--cc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKSSDG--TL  103 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~--~~  103 (358)
                      +.+.+|+ +++++++||+++|.||++||++|+...+.+.++.+++.+.+  +.++.|++|.+ .+...++......  .+
T Consensus         4 ~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~~~v~~d~~~~~~~~~~~~~~~~~~~~   81 (116)
T cd02966           4 LPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDG--VEVVGVNVDDDDPAAVKAFLKKYGITFPV   81 (116)
T ss_pred             ccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCC--eEEEEEECCCCCHHHHHHHHHHcCCCcce
Confidence            5678888 99999999999999999999999999999999999987444  89999999976 6777777665332  33


Q ss_pred             cccccceeeeccccCCCCc
Q 018266          104 IEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       104 ~~~~~~~l~~~~gi~~~P~  122 (358)
                      +.+....+.+.|++..+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~P~  100 (116)
T cd02966          82 LLDPDGELAKAYGVRGLPT  100 (116)
T ss_pred             EEcCcchHHHhcCcCccce
Confidence            3344456677777766663

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>TIGR01068 thioredoxin thioredoxin

Probab=99.23  E-value=9.4e-11  Score=88.95  Aligned_cols=70  Identities=29%  Similarity=0.591  Sum_probs=60.3

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.+.|.++.+++.    .++.++.+..+..                       ..+.++|++
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v   66 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE----GKVKFVKLNVDEN-----------------------PDIAAKYGI   66 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcCC
Confidence            4799999999999999999999999998886    5678888877754                       578899999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|+++++ ++|+++.+
T Consensus        67 ~~~P~~~~~-~~g~~~~~   83 (101)
T TIGR01068        67 RSIPTLLLF-KNGKEVDR   83 (101)
T ss_pred             CcCCEEEEE-eCCcEeee
Confidence            999999999 78877655

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=99.23  E-value=5.5e-11  Score=90.92  Aligned_cols=75  Identities=23%  Similarity=0.453  Sum_probs=59.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.++++.+.++.  ...+.++.+.++.+.                     ...++++|+
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~~---------------------~~~~~~~~~   72 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKE--DGKGVLAAVDCTKPE---------------------HDALKEEYN   72 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhh--CCceEEEEEECCCCc---------------------cHHHHHhCC
Confidence            457999999999999999999999999998863  234555556665421                     367889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      ++++|+++++ ++|+++.+
T Consensus        73 i~~~Pt~~~~-~~g~~~~~   90 (104)
T cd02997          73 VKGFPTFKYF-ENGKFVEK   90 (104)
T ss_pred             CccccEEEEE-eCCCeeEE
Confidence            9999999888 67886654

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=99.23  E-value=2.6e-11  Score=99.62  Aligned_cols=56  Identities=27%  Similarity=0.388  Sum_probs=52.8

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+.+|+ +++++++||+|+|.|||+||+ |+..+|.|.++++++++.+  ++++.|+++
T Consensus         7 l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~--~~vv~v~~~   63 (152)
T cd00340           7 VKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRG--LVVLGFPCN   63 (152)
T ss_pred             EECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCC--EEEEEeccC
Confidence            7789999 999999999999999999999 9999999999999998777  999999875

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=99.22  E-value=5.3e-11  Score=89.86  Aligned_cols=70  Identities=20%  Similarity=0.453  Sum_probs=58.5

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.+.|.++.+++.    .++.++.+..+.                       ...++++|++
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~----~~i~~~~vd~~~-----------------------~~~~~~~~~i   66 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAF----PSVLFLSIEAEE-----------------------LPEISEKFEI   66 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhC----CceEEEEEcccc-----------------------CHHHHHhcCC
Confidence            6899999999999999999999999998863    455565554443                       3678899999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|+++++ .+|+++.+
T Consensus        67 ~~~Pt~~~~-~~g~~~~~   83 (97)
T cd02984          67 TAVPTFVFF-RNGTIVDR   83 (97)
T ss_pred             ccccEEEEE-ECCEEEEE
Confidence            999999999 68988876

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=99.22  E-value=1.7e-11  Score=93.88  Aligned_cols=60  Identities=25%  Similarity=0.482  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|.|||+||++|+.+.|.|+++++++...   +.++.|+++...                    .++++|+|.++
T Consensus        18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~i~~~   74 (104)
T cd03004          18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGK---VKVGSVDCQKYE--------------------SLCQQANIRAY   74 (104)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCchH--------------------HHHHHcCCCcc
Confidence            4679999999999999999999999999998543   677777777544                    57888999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (104)
T cd03004          75 PTI   77 (104)
T ss_pred             cEE
Confidence            964

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=99.22  E-value=1.8e-11  Score=92.31  Aligned_cols=61  Identities=18%  Similarity=0.310  Sum_probs=50.4

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      -+|++++|+||++||++|+.+.|.+.++++.+...   +.++.|+++...                    .++++|++.+
T Consensus        10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~l~~~~~i~~   66 (96)
T cd02956          10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ---FVLAKVNCDAQP--------------------QIAQQFGVQA   66 (96)
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc---EEEEEEeccCCH--------------------HHHHHcCCCC
Confidence            35899999999999999999999999999988653   667777776554                    5688888888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        67 ~Pt~   70 (96)
T cd02956          67 LPTV   70 (96)
T ss_pred             CCEE
Confidence            8864

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=99.22  E-value=2.3e-11  Score=93.90  Aligned_cols=63  Identities=16%  Similarity=0.375  Sum_probs=50.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC---ceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~---~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++++++|.||||||++|+.+.|.|+++++.+++..+   .+.++.+++|.+.                    .++++|+|
T Consensus        17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~--------------------~l~~~~~v   76 (108)
T cd02996          17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES--------------------DIADRYRI   76 (108)
T ss_pred             cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--------------------HHHHhCCC
Confidence            468999999999999999999999999998865321   2666666666544                    57899999


Q ss_pred             CCCCcc
Q 018266          118 DAYPFT  123 (358)
Q Consensus       118 ~~~P~~  123 (358)
                      +++|+.
T Consensus        77 ~~~Ptl   82 (108)
T cd02996          77 NKYPTL   82 (108)
T ss_pred             CcCCEE
Confidence            999964

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=99.22  E-value=1.9e-11  Score=93.27  Aligned_cols=59  Identities=17%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .|++|+|+|||+||++|+.++|.|.+++++++...  +.++.++.| +.                    +++++|+|+++
T Consensus        16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~--~~~~~vd~d-~~--------------------~~~~~~~v~~~   72 (102)
T cd02948          16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDL--LHFATAEAD-TI--------------------DTLKRYRGKCE   72 (102)
T ss_pred             cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCc--EEEEEEeCC-CH--------------------HHHHHcCCCcC
Confidence            58999999999999999999999999999886433  667777777 33                    35677888888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        73 Pt   74 (102)
T cd02948          73 PT   74 (102)
T ss_pred             cE
Confidence            85

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=99.22  E-value=4.8e-11  Score=99.90  Aligned_cols=68  Identities=18%  Similarity=0.296  Sum_probs=56.4

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++|+|.||++||++|+.+.|.|.+++.+|..     +.  ++.+|.+.                     . .++..|+|
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~-----vk--F~kVd~d~---------------------~-~l~~~f~v  133 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA-----VK--FCKIRASA---------------------T-GASDEFDT  133 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----eE--EEEEeccc---------------------h-hhHHhCCC
Confidence            35999999999999999999999999999853     44  44444432                     2 68889999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++||++++ ++|+++.+
T Consensus       134 ~~vPTllly-k~G~~v~~  150 (175)
T cd02987         134 DALPALLVY-KGGELIGN  150 (175)
T ss_pred             CCCCEEEEE-ECCEEEEE
Confidence            999999999 88988876

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=99.21  E-value=1.3e-11  Score=94.67  Aligned_cols=64  Identities=20%  Similarity=0.443  Sum_probs=51.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|.||++||++|+.++|.|.+++++++..+.++.+..++++...                    .++++|+|.++
T Consensus        14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~--------------------~~~~~~~I~~~   73 (104)
T cd03000          14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYS--------------------SIASEFGVRGY   73 (104)
T ss_pred             cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCH--------------------hHHhhcCCccc
Confidence            4679999999999999999999999999999765544666666666433                    46788899999


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        74 Pt~~   77 (104)
T cd03000          74 PTIK   77 (104)
T ss_pred             cEEE
Confidence            9643

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.21  E-value=7.3e-11  Score=102.13  Aligned_cols=70  Identities=29%  Similarity=0.470  Sum_probs=58.2

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.+++++++++    ..+.+..|.++.                       ...++++|+|
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~----~~v~~~~VD~~~-----------------------~~~l~~~~~I  104 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALK----GQVNVADLDATR-----------------------ALNLAKRFAI  104 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEecCcc-----------------------cHHHHHHcCC
Confidence            5799999999999999999999999999987    345555555443                       3678999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      +++||+++++ +|+++..
T Consensus       105 ~~~PTl~~f~-~G~~v~~  121 (224)
T PTZ00443        105 KGYPTLLLFD-KGKMYQY  121 (224)
T ss_pred             CcCCEEEEEE-CCEEEEe
Confidence            9999999995 7877654

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=99.21  E-value=1.9e-11  Score=99.01  Aligned_cols=63  Identities=22%  Similarity=0.559  Sum_probs=50.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .+||+++|+|||+||++|+.++|.|.++++++...   +.++.|++|.+..                  ..++++|+|.+
T Consensus        18 ~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~---~~~v~v~vd~~~~------------------~~~~~~~~V~~   76 (142)
T cd02950          18 SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ---VNFVMLNVDNPKW------------------LPEIDRYRVDG   76 (142)
T ss_pred             hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC---eeEEEEEcCCccc------------------HHHHHHcCCCC
Confidence            46899999999999999999999999999988654   7789998886532                  13456777777


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        77 iPt~   80 (142)
T cd02950          77 IPHF   80 (142)
T ss_pred             CCEE
Confidence            7753

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PTZ00051 thioredoxin; Provisional

Probab=99.21  E-value=4.2e-11  Score=90.62  Aligned_cols=70  Identities=23%  Similarity=0.445  Sum_probs=58.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++++++.     ++.++.|+.+.                       ...++++|+
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~-----~~~~~~vd~~~-----------------------~~~~~~~~~   68 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT-----KMVFVKVDVDE-----------------------LSEVAEKEN   68 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC-----CcEEEEEECcc-----------------------hHHHHHHCC
Confidence            36899999999999999999999999988764     35566665553                       367899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~g~~~~~   86 (98)
T PTZ00051         69 ITSMPTFKVF-KNGSVVDT   86 (98)
T ss_pred             CceeeEEEEE-eCCeEEEE
Confidence            9999999888 89998876

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=99.21  E-value=3.5e-11  Score=95.07  Aligned_cols=88  Identities=19%  Similarity=0.402  Sum_probs=68.6

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-hhHHHHHHhhCCC--cc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKSSDG--TL  103 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-~~~~~~~~~~~~~--~~  103 (358)
                      +++.+|+ +++++++||+++|.||++||++|+.++|.+.+++++       ++++.|+.|.+ .+...++..+...  .+
T Consensus         5 l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-------~~~i~i~~~~~~~~~~~~~~~~~~~~~~~   77 (123)
T cd03011           5 ATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-------YPVVSVALRSGDDGAVARFMQKKGYGFPV   77 (123)
T ss_pred             eecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-------CCEEEEEccCCCHHHHHHHHHHcCCCccE
Confidence            7788999 999999999999999999999999999999998875       45777887753 5556666555222  33


Q ss_pred             cccccceeeeccccCCCCc
Q 018266          104 IEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       104 ~~~~~~~l~~~~gi~~~P~  122 (358)
                      +.+....+++.|++.+.|+
T Consensus        78 ~~d~~~~~~~~~~i~~~P~   96 (123)
T cd03011          78 INDPDGVISARWGVSVTPA   96 (123)
T ss_pred             EECCCcHHHHhCCCCcccE
Confidence            4444556888888888885

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=99.20  E-value=4.6e-11  Score=98.29  Aligned_cols=56  Identities=20%  Similarity=0.213  Sum_probs=53.3

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~   85 (358)
                      +.+.+|+ +++++++||+|+|.|||+||++|+..+|.+.++++++++.|  ++++.|++
T Consensus         7 l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~--~~v~~i~~   63 (153)
T TIGR02540         7 VKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSH--FNVLAFPC   63 (153)
T ss_pred             eECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCC--eEEEEEec
Confidence            7789999 99999999999999999999999999999999999999887  99999986

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=99.19  E-value=2.4e-11  Score=93.89  Aligned_cols=62  Identities=27%  Similarity=0.521  Sum_probs=52.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .|++++|.||++||++|+.+.|.|.++++.+...   +.++.++++.++.                  ..++++|+|.++
T Consensus        17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~v~~~~~~~------------------~~~~~~~~i~~~   75 (109)
T cd03002          17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGL---VQVAAVDCDEDKN------------------KPLCGKYGVQGF   75 (109)
T ss_pred             CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCC---ceEEEEecCcccc------------------HHHHHHcCCCcC
Confidence            4789999999999999999999999999998753   7788888886432                  357889999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        76 Pt~   78 (109)
T cd03002          76 PTL   78 (109)
T ss_pred             CEE
Confidence            964

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=99.18  E-value=3.8e-11  Score=92.83  Aligned_cols=63  Identities=14%  Similarity=0.364  Sum_probs=51.1

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeee-ccccC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIE-DYGAD  118 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~gi~  118 (358)
                      .+||+++|.||++||+||+++.|.|.++++.+++.+  +.++.|++|.+..                   .++. .|+++
T Consensus        19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~~-------------------~~~~~~~~v~   77 (109)
T cd02993          19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQR-------------------EFAKEELQLK   77 (109)
T ss_pred             hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccch-------------------hhHHhhcCCC
Confidence            458999999999999999999999999999998544  7888888876322                   3454 48898


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      .+|+.
T Consensus        78 ~~Pti   82 (109)
T cd02993          78 SFPTI   82 (109)
T ss_pred             cCCEE
Confidence            99964

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=99.18  E-value=6.3e-11  Score=92.00  Aligned_cols=79  Identities=16%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             CCcEEEEEEec-------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018266          169 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  241 (358)
Q Consensus       169 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      +|++|+|+|||       +||++|+.+.|.|.++.++++    .++.++.|.+|...                ...+...
T Consensus        20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~----~~v~fv~Vdvd~~~----------------~w~d~~~   79 (119)
T cd02952          20 EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP----EDCVFIYCDVGDRP----------------YWRDPNN   79 (119)
T ss_pred             CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC----CCCEEEEEEcCCcc----------------cccCcch
Confidence            57899999999       999999999999999999986    45788888887532                0111246


Q ss_pred             HHHHHcCCC-ceeeEEEECCCCcEEec
Q 018266          242 DLCRIFNIK-GIPALVLIGPDGKTIST  267 (358)
Q Consensus       242 ~l~~~~~v~-~~P~~~lid~~G~v~~~  267 (358)
                      .+...|+|. ++||+++++..++++..
T Consensus        80 ~~~~~~~I~~~iPT~~~~~~~~~l~~~  106 (119)
T cd02952          80 PFRTDPKLTTGVPTLLRWKTPQRLVED  106 (119)
T ss_pred             hhHhccCcccCCCEEEEEcCCceecch
Confidence            888999998 99999999655555543

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=99.18  E-value=4.7e-11  Score=92.99  Aligned_cols=64  Identities=28%  Similarity=0.584  Sum_probs=51.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++|+|.||++||++|+.++|.|+++++.+++....+.++.++++.+..                  ..++++|+++++|
T Consensus        19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~------------------~~~~~~~~i~~~P   80 (114)
T cd02992          19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN------------------VALCRDFGVTGYP   80 (114)
T ss_pred             CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh------------------HHHHHhCCCCCCC
Confidence            4899999999999999999999999999997644346677777654432                  2578899999999


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        81 t~   82 (114)
T cd02992          81 TL   82 (114)
T ss_pred             EE
Confidence            64

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=99.17  E-value=6.1e-10  Score=87.43  Aligned_cols=85  Identities=21%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  242 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      ..-.+|+|+|+|+++||++|+.+....   .++.+.+.    .++.+|.+..+...+ ..+.+              ...
T Consensus        11 Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~----~~fv~VkvD~~~~~~-~~~~~--------------~~~   71 (124)
T cd02955          11 ARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILN----ENFVPIKVDREERPD-VDKIY--------------MNA   71 (124)
T ss_pred             HHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHh----CCEEEEEEeCCcCcH-HHHHH--------------HHH
Confidence            334689999999999999999987632   24444443    455555555544321 11110              122


Q ss_pred             HHHHcCCCceeeEEEECCCCcEEecCc
Q 018266          243 LCRIFNIKGIPALVLIGPDGKTISTNG  269 (358)
Q Consensus       243 l~~~~~v~~~P~~~lid~~G~v~~~~g  269 (358)
                      ....|++.++|+++++|++|++++..+
T Consensus        72 ~~~~~~~~G~Pt~vfl~~~G~~~~~~~   98 (124)
T cd02955          72 AQAMTGQGGWPLNVFLTPDLKPFFGGT   98 (124)
T ss_pred             HHHhcCCCCCCEEEEECCCCCEEeeee
Confidence            333679999999999999999998753

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=2.5e-11  Score=92.37  Aligned_cols=64  Identities=22%  Similarity=0.520  Sum_probs=51.4

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      +.....+|+++|+|||+|||||+.+.|.|.+++.++.+    +.++.+++|.  .                  .++++.+
T Consensus        15 ~~~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde--~------------------~~~~~~~   70 (106)
T KOG0907|consen   15 SAAEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDE--L------------------EEVAKEF   70 (106)
T ss_pred             HHhhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEeccc--C------------------HhHHHhc
Confidence            33344579999999999999999999999999998865    4566677775  2                  3678899


Q ss_pred             ccCCCCcc
Q 018266          116 GADAYPFT  123 (358)
Q Consensus       116 gi~~~P~~  123 (358)
                      ++.+.|+.
T Consensus        71 ~V~~~PTf   78 (106)
T KOG0907|consen   71 NVKAMPTF   78 (106)
T ss_pred             CceEeeEE
Confidence            99999963

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=99.16  E-value=1e-10  Score=98.16  Aligned_cols=95  Identities=21%  Similarity=0.336  Sum_probs=68.0

Q ss_pred             ccCccc-ccCCCCc-eec--ccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           22 SEGVEF-LLSRQGK-VPL--SSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l--~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      ...++| +.+.+|. +++  +.+ +||+++|+||++||++|+.++|.+.++++    .+  ++++.|+.+.+.+...++.
T Consensus        38 ~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~--~~vi~V~~~~~~~~~~~~~  111 (173)
T TIGR00385        38 KPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DG--LPIVGVDYKDQSQNALKFL  111 (173)
T ss_pred             CCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cC--CEEEEEECCCChHHHHHHH
Confidence            334566 7778886 444  454 69999999999999999999999987764    23  8899999876665555555


Q ss_pred             hhCCC---cccccccceeeeccccCCCCc
Q 018266           97 KSSDG---TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        97 ~~~~~---~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .....   .++.+...++.+.|++.++|+
T Consensus       112 ~~~~~~f~~v~~D~~~~~~~~~~v~~~P~  140 (173)
T TIGR00385       112 KELGNPYQAILIDPNGKLGLDLGVYGAPE  140 (173)
T ss_pred             HHcCCCCceEEECCCCchHHhcCCeeCCe
Confidence            44222   233455566777888877774

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=99.15  E-value=3.4e-10  Score=86.34  Aligned_cols=65  Identities=23%  Similarity=0.492  Sum_probs=55.6

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.|.+.+++++++    ..+.++.+..+.                       ...++++|+|
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~id~~~-----------------------~~~~~~~~~i   70 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALK----GIVKVGAVDADV-----------------------HQSLAQQYGV   70 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCceEEEEECcc-----------------------hHHHHHHCCC
Confidence            4679999999999999999999999999886    457777777664                       3678899999


Q ss_pred             CceeeEEEECCC
Q 018266          250 KGIPALVLIGPD  261 (358)
Q Consensus       250 ~~~P~~~lid~~  261 (358)
                      +++|++++++++
T Consensus        71 ~~~P~~~~~~~~   82 (103)
T cd03001          71 RGFPTIKVFGAG   82 (103)
T ss_pred             CccCEEEEECCC
Confidence            999999999544

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=99.15  E-value=1.1e-10  Score=101.82  Aligned_cols=62  Identities=26%  Similarity=0.439  Sum_probs=57.1

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ...+| +.+.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.|  ++|+.|+++
T Consensus        78 ~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~G--v~VIgV~~d  141 (236)
T PLN02399         78 SVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQG--FEILAFPCN  141 (236)
T ss_pred             CCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCC--cEEEEEecc
Confidence            33466 8899999 99999999999999999999999999999999999999887  999999985

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=99.15  E-value=1.5e-10  Score=98.50  Aligned_cols=70  Identities=21%  Similarity=0.354  Sum_probs=55.1

Q ss_pred             cCccc-ccCCCCc-eecc--cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           23 EGVEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      +.++| +.+.+|+ ++++  ..+||+++|+||++||++|+..+|.+.+++++.   +  +++++|+.+ +.+...++..+
T Consensus        51 ~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~--~~vv~Is~~-~~~~~~~~~~~  124 (189)
T TIGR02661        51 AAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---E--TDVVMISDG-TPAEHRRFLKD  124 (189)
T ss_pred             cCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---C--CcEEEEeCC-CHHHHHHHHHh
Confidence            44566 8899999 9995  568999999999999999999999999987643   3  568888854 45555555443

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=99.14  E-value=5.5e-11  Score=90.61  Aligned_cols=60  Identities=20%  Similarity=0.470  Sum_probs=49.0

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      .++|.|||+||++|+.++|.|.+++++++...+.+.++.++++...                    .++++|++.++|+.
T Consensus        18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~--------------------~~~~~~~v~~~Pt~   77 (102)
T cd03005          18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR--------------------ELCSEFQVRGYPTL   77 (102)
T ss_pred             CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh--------------------hhHhhcCCCcCCEE
Confidence            4999999999999999999999999999763334777777776544                    46788899888863

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=99.14  E-value=7.7e-11  Score=89.73  Aligned_cols=60  Identities=23%  Similarity=0.480  Sum_probs=48.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +|+ ++|+|||+||++|+.+.|.|.++++.++..+  +.++.++++.+.                    .++.+|+|.++
T Consensus        16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~--------------------~~~~~~~i~~~   72 (101)
T cd02994          16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLG--INVAKVDVTQEP--------------------GLSGRFFVTAL   72 (101)
T ss_pred             CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCC--eEEEEEEccCCH--------------------hHHHHcCCccc
Confidence            466 6899999999999999999999999765433  677777776544                    46788899999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (101)
T cd02994          73 PTI   75 (101)
T ss_pred             CEE
Confidence            964

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.14  E-value=1.4e-10  Score=97.18  Aligned_cols=60  Identities=27%  Similarity=0.501  Sum_probs=54.7

Q ss_pred             cc-ccCCCCc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           26 EF-LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +| +.+.+|+ ++++++ +||+++|+||++||++|...+|.+.++++++.+.+  ++++.|++|.
T Consensus         6 ~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~--v~~v~is~d~   68 (171)
T cd02969           6 DFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKG--VAVVAINSND   68 (171)
T ss_pred             CccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCC--eEEEEEecCc
Confidence            44 7888999 999998 89999999999999999999999999999998765  9999999975

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=99.14  E-value=7e-11  Score=89.94  Aligned_cols=60  Identities=15%  Similarity=0.177  Sum_probs=49.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+|+|.|+|+||+||+.+.|.|+++++++++.   +.+..|++|..+                    +++..|++.+.
T Consensus        13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~---~~f~kVDVDev~--------------------dva~~y~I~am   69 (114)
T cd02986          13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM---ASIYLVDVDKVP--------------------VYTQYFDISYI   69 (114)
T ss_pred             CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc---eEEEEEeccccH--------------------HHHHhcCceeC
Confidence            6899999999999999999999999999998543   445566666443                    57888999888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        70 Ptf   72 (114)
T cd02986          70 PST   72 (114)
T ss_pred             cEE
Confidence            863

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=99.13  E-value=2.9e-10  Score=87.01  Aligned_cols=72  Identities=18%  Similarity=0.412  Sum_probs=58.9

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.|.+.++++.++.  ..++.++.+..+..                      ...++++|++
T Consensus        18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~~----------------------~~~~~~~~~i   73 (105)
T cd02998          18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN--EDDVVIAKVDADEA----------------------NKDLAKKYGV   73 (105)
T ss_pred             CCcEEEEEECCCCHHHHhhChHHHHHHHHhCC--CCCEEEEEEECCCc----------------------chhhHHhCCC
Confidence            57999999999999999999999999999862  24577777766652                      2578999999


Q ss_pred             CceeeEEEECCCCcEE
Q 018266          250 KGIPALVLIGPDGKTI  265 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~  265 (358)
                      .++|++++++++|+..
T Consensus        74 ~~~P~~~~~~~~~~~~   89 (105)
T cd02998          74 SGFPTLKFFPKGSTEP   89 (105)
T ss_pred             CCcCEEEEEeCCCCCc
Confidence            9999999997776443

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=99.13  E-value=1.7e-10  Score=87.22  Aligned_cols=72  Identities=25%  Similarity=0.498  Sum_probs=59.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|.||++||++|+.+.+.+.++++.++  ...++.++.++++.                       ...++++|+
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~--~~~~~~~~~v~~~~-----------------------~~~~~~~~~   68 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELK--GDGKVVVAKVDCTA-----------------------NNDLCSEYG   68 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhc--cCCceEEEEeeccc-----------------------hHHHHHhCC
Confidence            34699999999999999999999999999884  12567777776664                       368899999


Q ss_pred             CCceeeEEEECCCCcEE
Q 018266          249 IKGIPALVLIGPDGKTI  265 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~  265 (358)
                      |.++|++++++++|+.+
T Consensus        69 i~~~Pt~~~~~~~~~~~   85 (101)
T cd02961          69 VRGYPTIKLFPNGSKEP   85 (101)
T ss_pred             CCCCCEEEEEcCCCccc
Confidence            99999999998776433

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=8e-11  Score=111.20  Aligned_cols=73  Identities=22%  Similarity=0.403  Sum_probs=52.9

Q ss_pred             CCCcccCCC-CceecccccCcccccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEE
Q 018266            6 DQSKFIDSS-DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS   84 (358)
Q Consensus         6 ~~~~~~~~~-~~~~~l~~~~~~~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~   84 (358)
                      +|..++++. ..+.+|+++..+.+.-         -++|-|||+||||||+||+++.|.|+++++.+++.   -.+|...
T Consensus       356 SqpiPe~~~~~pVkvvVgknfd~iv~---------de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~---~~vviAK  423 (493)
T KOG0190|consen  356 SQPIPEDNDRSPVKVVVGKNFDDIVL---------DEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD---ENVVIAK  423 (493)
T ss_pred             cCCCCcccccCCeEEEeecCHHHHhh---------ccccceEEEEcCcccchhhhhhhHHHHHHHHhcCC---CCcEEEE
Confidence            455555554 4566666555543222         23799999999999999999999999999999885   2477777


Q ss_pred             ecCChh
Q 018266           85 FDHDEN   90 (358)
Q Consensus        85 ~d~~~~   90 (358)
                      +|.+.+
T Consensus       424 mDaTaN  429 (493)
T KOG0190|consen  424 MDATAN  429 (493)
T ss_pred             eccccc
Confidence            776554

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=99.11  E-value=7.2e-10  Score=86.11  Aligned_cols=64  Identities=11%  Similarity=0.260  Sum_probs=53.9

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      ++.++|+||++||++|+.+.|.|.++.+.+     +.+.++.|..|..                       ..++++|+|
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-----~~i~~~~vd~d~~-----------------------~~l~~~~~v   73 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-----DKLKLEIYDFDED-----------------------KEKAEKYGV   73 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-----CceEEEEEeCCcC-----------------------HHHHHHcCC
Confidence            467889999999999999999999998775     3467777877753                       688999999


Q ss_pred             CceeeEEEECCC
Q 018266          250 KGIPALVLIGPD  261 (358)
Q Consensus       250 ~~~P~~~lid~~  261 (358)
                      .++|++++++.+
T Consensus        74 ~~vPt~~i~~~g   85 (113)
T cd02975          74 ERVPTTIFLQDG   85 (113)
T ss_pred             CcCCEEEEEeCC
Confidence            999999999543

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=99.11  E-value=1e-10  Score=95.20  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      .++++|+|+|||+||++|+.++|.|+++++++...+  +.++.|++|...+
T Consensus        45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~--v~f~~VDvd~~~~   93 (152)
T cd02962          45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNN--LKFGKIDIGRFPN   93 (152)
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--eEEEEEECCCCHH
Confidence            346899999999999999999999999999886543  8888888887664

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=99.11  E-value=3.1e-10  Score=96.30  Aligned_cols=88  Identities=15%  Similarity=0.231  Sum_probs=63.5

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++|+|.||++||++|+.+.|.|.+++.+|..     +.+  +.++.+                        .....|++
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~-----vkF--vkI~ad------------------------~~~~~~~i  150 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD-----TKF--VKIIST------------------------QCIPNYPD  150 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC-----CEE--EEEEhH------------------------HhHhhCCC
Confidence            46999999999999999999999999999863     444  444432                        12478999


Q ss_pred             CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018266          250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  296 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~  296 (358)
                      .++||++++ ++|+++.+       +.|...+....-..+.|+..|.
T Consensus       151 ~~lPTlliy-k~G~~v~~-------ivG~~~~gg~~~~~~~lE~~L~  189 (192)
T cd02988         151 KNLPTILVY-RNGDIVKQ-------FIGLLEFGGMNTTMEDLEWLLV  189 (192)
T ss_pred             CCCCEEEEE-ECCEEEEE-------EeCchhhCCCCCCHHHHHHHHH
Confidence            999999999 89988876       3343333222333455555444

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=99.11  E-value=1.2e-10  Score=92.95  Aligned_cols=48  Identities=10%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      .++++|+|.|||+||+||+.+.|.|+++++++.+.   ..|+.|++|..++
T Consensus        21 ~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~---~~~~kVDVDe~~d   68 (142)
T PLN00410         21 EEERLVVIRFGHDWDETCMQMDEVLASVAETIKNF---AVIYLVDITEVPD   68 (142)
T ss_pred             cCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCCCHH
Confidence            35799999999999999999999999999998765   5677788776653

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=99.09  E-value=1.7e-10  Score=93.50  Aligned_cols=73  Identities=30%  Similarity=0.557  Sum_probs=60.9

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCC-CceEEEEEEecCC---hhHHHHHHh
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEHFK   97 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~-~~~~iv~i~~d~~---~~~~~~~~~   97 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++ |...+|.+.++++++++.+ .++++++|+.|..   .+..+++..
T Consensus         3 p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~   82 (142)
T cd02968           3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAK   82 (142)
T ss_pred             CceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHH
Confidence            355 7789999 9999999999999999999998 9999999999999998764 4599999999853   344455533

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.09  E-value=1.8e-10  Score=96.01  Aligned_cols=93  Identities=18%  Similarity=0.160  Sum_probs=69.8

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD  100 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (358)
                      .++| +.+.+|+ +++++++||+++|.||+.| |++|+..+|.|.++++++.  +  ++++.|+.|.. ...+++.....
T Consensus        24 ~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~--~~vv~vs~D~~-~~~~~f~~~~~   98 (167)
T PRK00522         24 APDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--N--TVVLCISADLP-FAQKRFCGAEG   98 (167)
T ss_pred             CCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--C--cEEEEEeCCCH-HHHHHHHHhCC
Confidence            3566 7889999 9999999999999999999 9999999999999999883  3  89999998853 33444444321


Q ss_pred             ---Cccccc-ccceeeeccccCCCC
Q 018266          101 ---GTLIEE-DLIGLIEDYGADAYP  121 (358)
Q Consensus       101 ---~~~~~~-~~~~l~~~~gi~~~P  121 (358)
                         ..++.+ .+..+++.||+...|
T Consensus        99 ~~~~~~lsD~~~~~~~~~~gv~~~~  123 (167)
T PRK00522         99 LENVITLSDFRDHSFGKAYGVAIAE  123 (167)
T ss_pred             CCCceEeecCCccHHHHHhCCeecc
Confidence               234444 344667777765444

>PTZ00062 glutaredoxin; Provisional

Probab=99.09  E-value=1.5e-09  Score=92.46  Aligned_cols=30  Identities=7%  Similarity=0.090  Sum_probs=27.4

Q ss_pred             CEEEEEEeCCCChhhhhhhHHHHHHHHHHh
Q 018266           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLR   72 (358)
Q Consensus        43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~   72 (358)
                      ..++++|||+||++|+.+.|.+.++++++.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~   47 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP   47 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCC
Confidence            557899999999999999999999999873

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.08  E-value=3.1e-10  Score=91.81  Aligned_cols=94  Identities=23%  Similarity=0.310  Sum_probs=71.1

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC-
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD-  100 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~-  100 (358)
                      ++| +.+.+|+ +++++++||+++|.|| +.||+.|...+|.+.++++++.+.+  ++++.|+.|.. +...++..... 
T Consensus         4 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~~-~~~~~~~~~~~~   80 (140)
T cd03017           4 PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALG--AVVIGVSPDSV-ESHAKFAEKYGL   80 (140)
T ss_pred             CCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH-HHHHHHHHHhCC
Confidence            345 7889999 9999999999999999 5899999999999999999998766  89999998854 44555544421 


Q ss_pred             -CcccccccceeeeccccCCCC
Q 018266          101 -GTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus       101 -~~~~~~~~~~l~~~~gi~~~P  121 (358)
                       ..++.+....+.+.||+...+
T Consensus        81 ~~~~l~D~~~~~~~~~gv~~~~  102 (140)
T cd03017          81 PFPLLSDPDGKLAKAYGVWGEK  102 (140)
T ss_pred             CceEEECCccHHHHHhCCcccc
Confidence             133444444566666665553

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>PTZ00256 glutathione peroxidase; Provisional

Probab=99.08  E-value=3.4e-10  Score=95.88  Aligned_cols=60  Identities=30%  Similarity=0.480  Sum_probs=53.3

Q ss_pred             ccc-ccCCCCc-eecccCCCCEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+| +++.+|+ +++++++||+| ++.|||+||++|+..+|.|.++++++++.+  ++|+.|++|
T Consensus        21 p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~g--v~vv~vs~~   83 (183)
T PTZ00256         21 FEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQG--LEILAFPCN   83 (183)
T ss_pred             cceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCC--cEEEEEecc
Confidence            455 7889999 99999999965 556699999999999999999999998877  999999975

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=99.07  E-value=4.8e-09  Score=90.18  Aligned_cols=115  Identities=20%  Similarity=0.433  Sum_probs=93.7

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH---HHHHHhhh-
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS-  226 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~-  226 (358)
                      +|.+ +.+|+++++..++||+++|+|..+.||. |..++..|.++.++..+..+.++++++|++|++.   +..+++.. 
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~  128 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL  128 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence            6888 9999999999999999999999999998 9999999999999988436689999999999754   44555555 


Q ss_pred             c-C-CccccccCchhHHHHHHHcCCCc---------------eeeEEEECCCCcEEec
Q 018266          227 I-M-PWLAIPYEDRARQDLCRIFNIKG---------------IPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~-~-~~~~~~~~~~~~~~l~~~~~v~~---------------~P~~~lid~~G~v~~~  267 (358)
                      . . .|..+....+....++++|+|..               ...++++|++|+++..
T Consensus       129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~  186 (207)
T COG1999         129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGT  186 (207)
T ss_pred             cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEE
Confidence            1 1 26666666667788999988752               2357999999999876

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=99.06  E-value=3e-11  Score=104.78  Aligned_cols=64  Identities=22%  Similarity=0.454  Sum_probs=52.2

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      ...++|.||||||+||+++.|.|.++..++++.|-++.+  -+.|++.-                  ..+++++||++||
T Consensus        43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikV--GKlDaT~f------------------~aiAnefgiqGYP  102 (468)
T KOG4277|consen   43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKV--GKLDATRF------------------PAIANEFGIQGYP  102 (468)
T ss_pred             CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceee--cccccccc------------------hhhHhhhccCCCc
Confidence            469999999999999999999999999999998855444  45555443                  3678999999999


Q ss_pred             cchH
Q 018266          122 FTRK  125 (358)
Q Consensus       122 ~~~~  125 (358)
                      +.+.
T Consensus       103 TIk~  106 (468)
T KOG4277|consen  103 TIKF  106 (468)
T ss_pred             eEEE
Confidence            7543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=8.2e-11  Score=103.06  Aligned_cols=51  Identities=25%  Similarity=0.539  Sum_probs=43.9

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      +....-++|+|+||+|||+||+.++|.+++++.+++.+   +.++.||||.+..
T Consensus        38 ~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~---f~LakvN~D~~p~   88 (304)
T COG3118          38 IQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK---FKLAKVNCDAEPM   88 (304)
T ss_pred             HHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc---eEEEEecCCcchh
Confidence            33344579999999999999999999999999999887   8888888887664

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=99.04  E-value=3.8e-10  Score=85.93  Aligned_cols=60  Identities=28%  Similarity=0.687  Sum_probs=50.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|+||++||++|+.+.|.|.++++++.. +  +.++.|+++...                    .++++|++..+
T Consensus        16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~~--------------------~l~~~~~v~~~   72 (103)
T PF00085_consen   16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDENK--------------------ELCKKYGVKSV   72 (103)
T ss_dssp             TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTSH--------------------HHHHHTTCSSS
T ss_pred             cCCCEEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhccc--------------------hhhhccCCCCC
Confidence            479999999999999999999999999999887 2  777777776554                    57888888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (103)
T PF00085_consen   73 PTI   75 (103)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            863

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>PTZ00062 glutaredoxin; Provisional

Probab=99.03  E-value=9.1e-10  Score=93.75  Aligned_cols=60  Identities=7%  Similarity=0.082  Sum_probs=51.8

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      ..++++|||+||++|+.+.|.|.++.++|.+       +.++.+|.                         +    |+|.
T Consensus        18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~-------~~F~~V~~-------------------------d----~~V~   61 (204)
T PTZ00062         18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS-------LEFYVVNL-------------------------A----DANN   61 (204)
T ss_pred             CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC-------cEEEEEcc-------------------------c----cCcc
Confidence            5689999999999999999999999999964       66666663                         1    8999


Q ss_pred             ceeeEEEECCCCcEEec
Q 018266          251 GIPALVLIGPDGKTIST  267 (358)
Q Consensus       251 ~~P~~~lid~~G~v~~~  267 (358)
                      ++|+++++ ++|+.+.+
T Consensus        62 ~vPtfv~~-~~g~~i~r   77 (204)
T PTZ00062         62 EYGVFEFY-QNSQLINS   77 (204)
T ss_pred             cceEEEEE-ECCEEEee
Confidence            99999999 88888877

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.03  E-value=4.1e-10  Score=91.48  Aligned_cols=61  Identities=23%  Similarity=0.241  Sum_probs=53.5

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .++| +.+.+|. +++++++||+++|.||+.| |++|+..+|.|.++++++.  +  +.++.|+.|..
T Consensus         6 aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~--~~vi~Is~d~~   69 (143)
T cd03014           6 APDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--N--TVVLTISADLP   69 (143)
T ss_pred             CCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--C--CEEEEEECCCH
Confidence            3455 7889999 9999999999999999998 6999999999999999873  3  88999998853

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>PRK09381 trxA thioredoxin; Provisional

Probab=99.03  E-value=4.7e-10  Score=86.68  Aligned_cols=59  Identities=31%  Similarity=0.623  Sum_probs=49.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|+||++||++|+.++|.|+++++++...   +.++.++++...                    .++.+|++..+
T Consensus        20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~   76 (109)
T PRK09381         20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRGI   76 (109)
T ss_pred             CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC---cEEEEEECCCCh--------------------hHHHhCCCCcC
Confidence            3789999999999999999999999999998653   778888888655                    35667788888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        77 Pt   78 (109)
T PRK09381         77 PT   78 (109)
T ss_pred             CE
Confidence            85

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.03  E-value=7.8e-10  Score=90.44  Aligned_cols=65  Identities=26%  Similarity=0.343  Sum_probs=56.1

Q ss_pred             ccCCCCc-eecccCCC-CEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           28 LLSRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        28 l~~~~g~-v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +.+.+|+ +++++++| |+++|.|| ++||+.|+..+|.+.++++++++.+  ++++.|+.|.. +..+++
T Consensus        12 l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--v~vi~vs~d~~-~~~~~~   79 (149)
T cd03018          12 LPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAG--AEVLGISVDSP-FSLRAW   79 (149)
T ss_pred             ecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCC--CEEEEecCCCH-HHHHHH
Confidence            6788899 99999999 99988888 9999999999999999999998766  89999998753 334444

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.03  E-value=7e-10  Score=91.35  Aligned_cols=92  Identities=22%  Similarity=0.331  Sum_probs=69.4

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      ++| +.+.+|+ +++++++||+++|.||+. ||+.|+..++.+.++++++++.+  ++++.|+.|. .+...++..+...
T Consensus        11 p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~--v~vi~Is~d~-~~~~~~~~~~~~~   87 (154)
T PRK09437         11 PKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAG--VVVLGISTDK-PEKLSRFAEKELL   87 (154)
T ss_pred             CCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHhCC
Confidence            455 7889999 999999999999999976 68889999999999999998877  8999999884 4555565444221


Q ss_pred             --cccccccceeeeccccCC
Q 018266          102 --TLIEEDLIGLIEDYGADA  119 (358)
Q Consensus       102 --~~~~~~~~~l~~~~gi~~  119 (358)
                        .++.+....+.+.||+..
T Consensus        88 ~~~~l~D~~~~~~~~~gv~~  107 (154)
T PRK09437         88 NFTLLSDEDHQVAEQFGVWG  107 (154)
T ss_pred             CCeEEECCCchHHHHhCCCc
Confidence              333444445555666543

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=99.02  E-value=7e-10  Score=84.93  Aligned_cols=66  Identities=18%  Similarity=0.451  Sum_probs=50.5

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG  116 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  116 (358)
                      .+||+|+|+||++||++|+++.|.+   .++++.+.+ +  +.++.++++.+...                ...++++|+
T Consensus         9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~~----------------~~~~~~~~~   69 (104)
T cd02953           9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDPE----------------ITALLKRFG   69 (104)
T ss_pred             HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCHH----------------HHHHHHHcC
Confidence            3589999999999999999999988   578887765 3  77878877653221                125678889


Q ss_pred             cCCCCcch
Q 018266          117 ADAYPFTR  124 (358)
Q Consensus       117 i~~~P~~~  124 (358)
                      +.++|+..
T Consensus        70 i~~~Pti~   77 (104)
T cd02953          70 VFGPPTYL   77 (104)
T ss_pred             CCCCCEEE
Confidence            99999643

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=99.02  E-value=3e-10  Score=98.30  Aligned_cols=59  Identities=20%  Similarity=0.448  Sum_probs=48.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++++|+||||||+||+.++|.|+++++++++.   +.+..++++...                    .++++|+|.+||
T Consensus        52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~---v~~~~VD~~~~~--------------------~l~~~~~I~~~P  108 (224)
T PTZ00443         52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ---VNVADLDATRAL--------------------NLAKRFAIKGYP  108 (224)
T ss_pred             CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEecCcccH--------------------HHHHHcCCCcCC
Confidence            589999999999999999999999999998753   666666655443                    578899999999


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus       109 Tl  110 (224)
T PTZ00443        109 TL  110 (224)
T ss_pred             EE
Confidence            64

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.02  E-value=8.8e-10  Score=89.07  Aligned_cols=91  Identities=23%  Similarity=0.288  Sum_probs=68.0

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC---CCc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS---DGT  102 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~---~~~  102 (358)
                      +.+.+|+ +++++++||+++|.|| +.||++|...+|.+.+++++++..+  ++++.|+.|. .....++..+.   ...
T Consensus         7 l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~~i~is~d~-~~~~~~~~~~~~~~~~~   83 (140)
T cd02971           7 LPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGG--AEVLGVSVDS-PFSHKAWAEKEGGLNFP   83 (140)
T ss_pred             eccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHHHhcccCCCce
Confidence            7788899 9999999999999999 7899999999999999999997665  8999999874 33344443332   113


Q ss_pred             ccccccceeeeccccCCCC
Q 018266          103 LIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus       103 ~~~~~~~~l~~~~gi~~~P  121 (358)
                      ++.+....+.+.||+...|
T Consensus        84 ~l~D~~~~~~~~~g~~~~~  102 (140)
T cd02971          84 LLSDPDGEFAKAYGVLIEK  102 (140)
T ss_pred             EEECCChHHHHHcCCcccc
Confidence            3444444555666665554

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=99.01  E-value=1.3e-09  Score=85.71  Aligned_cols=79  Identities=24%  Similarity=0.474  Sum_probs=57.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCc-hhHHHHHHHc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED-RARQDLCRIF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~  247 (358)
                      .++.++|+|+++|||+|+.+.|.|.++.++.+      ..|..|++|.+..             ..... ....++.+.|
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~------~~~y~vdvd~~~~-------------~~~~~~~~~~~~~~~~   82 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK------APIYYIDSENNGS-------------FEMSSLNDLTAFRSRF   82 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC------CcEEEEECCCccC-------------cCcccHHHHHHHHHHc
Confidence            36789999999999999999999999988733      5688999885420             00000 0123555665


Q ss_pred             C----CCceeeEEEECCCCcEEec
Q 018266          248 N----IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~----v~~~P~~~lid~~G~v~~~  267 (358)
                      +    +.++||++++ ++|+.+.+
T Consensus        83 ~i~~~i~~~PT~v~~-k~Gk~v~~  105 (122)
T TIGR01295        83 GIPTSFMGTPTFVHI-TDGKQVSV  105 (122)
T ss_pred             CCcccCCCCCEEEEE-eCCeEEEE
Confidence            5    5569999999 89988876

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR03137 AhpC peroxiredoxin

Probab=99.01  E-value=4.6e-10  Score=95.41  Aligned_cols=67  Identities=28%  Similarity=0.396  Sum_probs=56.5

Q ss_pred             ccccCccc-ccC-CCCc---eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           20 LASEGVEF-LLS-RQGK---VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        20 l~~~~~~~-l~~-~~g~---v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +....++| +.+ .+|+   +++++++||+++|+|| +.||++|+..+|.|.++++++.+.+  ++++.|+.|..
T Consensus         4 ~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~g--v~vi~VS~D~~   76 (187)
T TIGR03137         4 INTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLG--VEVYSVSTDTH   76 (187)
T ss_pred             cCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcC--CcEEEEeCCCH
Confidence            34445677 555 4664   7788999999999999 9999999999999999999998777  88999999864

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=99.00  E-value=1e-09  Score=92.28  Aligned_cols=56  Identities=16%  Similarity=0.258  Sum_probs=52.2

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+.+|+ ++|++++||+|+|.|||+||++|++ +|.|+++++++++.|  ++|+.++++
T Consensus        10 ~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~g--l~Vlg~p~n   66 (183)
T PRK10606         10 VTTIDGEVTTLEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQG--FVVLGFPCN   66 (183)
T ss_pred             eECCCCCEEeHHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCC--eEEEEeecc
Confidence            6788999 9999999999999999999999974 999999999999887  999999986

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.00  E-value=1.1e-09  Score=92.02  Aligned_cols=92  Identities=22%  Similarity=0.309  Sum_probs=66.4

Q ss_pred             ccc-ccCCCC----c-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHHHH
Q 018266           25 VEF-LLSRQG----K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEH   95 (358)
Q Consensus        25 ~~~-l~~~~g----~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~~~   95 (358)
                      ++| +.+.+|    + +++++++||+++|.|| +.||++|...+|.|.++++++.+.+  +.++.|++|..+.  .+.+.
T Consensus         6 P~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~--v~vv~Is~d~~~~~~~~~~~   83 (173)
T cd03015           6 PDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLN--AEVLGVSTDSHFSHLAWRNT   83 (173)
T ss_pred             CCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEecCCHHHHHHHHHh
Confidence            455 555555    7 9999999999999999 8999999999999999999998876  8999999885432  22222


Q ss_pred             Hhh------CCCcccccccceeeeccccC
Q 018266           96 FKS------SDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        96 ~~~------~~~~~~~~~~~~l~~~~gi~  118 (358)
                      ...      ....++.+....+++.||+.
T Consensus        84 ~~~~~~~~~~~f~~l~D~~~~~~~~~gv~  112 (173)
T cd03015          84 PRKEGGLGKINFPLLADPKKKISRDYGVL  112 (173)
T ss_pred             hhhhCCccCcceeEEECCchhHHHHhCCc
Confidence            111      11234444455566666654

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=99.00  E-value=1.3e-09  Score=103.76  Aligned_cols=68  Identities=16%  Similarity=0.372  Sum_probs=57.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++|+|+||++||++|+.+.|.|.+++++++.   .++.++.|.+|.+.                     .....+.|+
T Consensus       370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~---~~v~~~kVdvD~~~---------------------~~~~~~~~~  425 (463)
T TIGR00424       370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG---SGVKVAKFRADGDQ---------------------KEFAKQELQ  425 (463)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCc---------------------cHHHHHHcC
Confidence            578999999999999999999999999999974   56888889888652                     123346899


Q ss_pred             CCceeeEEEECC
Q 018266          249 IKGIPALVLIGP  260 (358)
Q Consensus       249 v~~~P~~~lid~  260 (358)
                      |.++||+++|..
T Consensus       426 I~~~PTii~Fk~  437 (463)
T TIGR00424       426 LGSFPTILFFPK  437 (463)
T ss_pred             CCccceEEEEEC
Confidence            999999999943

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=99.00  E-value=1.2e-09  Score=90.84  Aligned_cols=55  Identities=27%  Similarity=0.463  Sum_probs=46.3

Q ss_pred             CcccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        24 ~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .++| ...+|+ +++++++    +|.||++||++|++++|.+.++++++   +  ++++.|++|.+
T Consensus        55 ~~~f-~l~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g--~~Vi~Vs~D~~  110 (181)
T PRK13728         55 PRWF-RLSNGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---G--FSVFPYTLDGQ  110 (181)
T ss_pred             CCcc-CCCCCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---C--CEEEEEEeCCC
Confidence            3444 335999 9999997    67799999999999999999999987   3  88999998854

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=99.00  E-value=4.9e-09  Score=76.37  Aligned_cols=62  Identities=23%  Similarity=0.384  Sum_probs=51.0

Q ss_pred             EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCce
Q 018266          173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  252 (358)
Q Consensus       173 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~  252 (358)
                      .+..||++||++|+...|.|.+++++++    ..+.++.|+.+.+                       ..+.++|++.++
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~v   54 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMG----DAVEVEYINVMEN-----------------------PQKAMEYGIMAV   54 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhc----CceEEEEEeCccC-----------------------HHHHHHcCCccC
Confidence            3568999999999999999999999886    4577777877654                       467788999999


Q ss_pred             eeEEEECCCCcE
Q 018266          253 PALVLIGPDGKT  264 (358)
Q Consensus       253 P~~~lid~~G~v  264 (358)
                      |++++   +|+.
T Consensus        55 Pt~~~---~g~~   63 (82)
T TIGR00411        55 PAIVI---NGDV   63 (82)
T ss_pred             CEEEE---CCEE
Confidence            99986   5654

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=98.99  E-value=3.5e-10  Score=107.49  Aligned_cols=66  Identities=17%  Similarity=0.323  Sum_probs=53.3

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      +.++++|+|+||||||++|+.++|.|++++++++..+  +.++.|++|.++..                  ..+.+|+|.
T Consensus       368 ~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~--v~~~kVdvD~~~~~------------------~~~~~~~I~  427 (463)
T TIGR00424       368 EERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSG--VKVAKFRADGDQKE------------------FAKQELQLG  427 (463)
T ss_pred             hcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--cEEEEEECCCCccH------------------HHHHHcCCC
Confidence            3468999999999999999999999999999997655  77888888865421                  123678999


Q ss_pred             CCCcch
Q 018266          119 AYPFTR  124 (358)
Q Consensus       119 ~~P~~~  124 (358)
                      +||+..
T Consensus       428 ~~PTii  433 (463)
T TIGR00424       428 SFPTIL  433 (463)
T ss_pred             ccceEE
Confidence            999643

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=98.99  E-value=6.8e-10  Score=84.69  Aligned_cols=59  Identities=24%  Similarity=0.504  Sum_probs=49.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++++|+||++||++|+.+.|.|.++++++...   +.++.++++...                    .++++|+|.++|
T Consensus        18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~id~~~~~--------------------~~~~~~~i~~~P   74 (103)
T cd03001          18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI---VKVGAVDADVHQ--------------------SLAQQYGVRGFP   74 (103)
T ss_pred             CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---ceEEEEECcchH--------------------HHHHHCCCCccC
Confidence            578999999999999999999999999988654   677777776543                    467888999999


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        75 ~~   76 (103)
T cd03001          75 TI   76 (103)
T ss_pred             EE
Confidence            64

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.99  E-value=1.3e-09  Score=83.15  Aligned_cols=67  Identities=19%  Similarity=0.437  Sum_probs=53.4

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.+.++++.++.  ..++.+..++.+.                        ..+...+++
T Consensus        18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~--~~~~~~~~id~~~------------------------~~~~~~~~~   71 (104)
T cd02995          18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKG--DDNVVIAKMDATA------------------------NDVPSEFVV   71 (104)
T ss_pred             CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC--CCCEEEEEEeCcc------------------------hhhhhhccC
Confidence            58999999999999999999999999999863  2345566565553                        346778899


Q ss_pred             CceeeEEEECCCC
Q 018266          250 KGIPALVLIGPDG  262 (358)
Q Consensus       250 ~~~P~~~lid~~G  262 (358)
                      .++|+++++.+++
T Consensus        72 ~~~Pt~~~~~~~~   84 (104)
T cd02995          72 DGFPTILFFPAGD   84 (104)
T ss_pred             CCCCEEEEEcCCC
Confidence            9999999995444

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>PRK10996 thioredoxin 2; Provisional

Probab=98.99  E-value=8.1e-10  Score=89.15  Aligned_cols=60  Identities=17%  Similarity=0.460  Sum_probs=49.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+|+|+||++||++|+.+.|.|.++++++...   +.++.++++...                    .++++|+|.++
T Consensus        51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~V~~~  107 (139)
T PRK10996         51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGK---VRFVKVNTEAER--------------------ELSARFRIRSI  107 (139)
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEeCCCCH--------------------HHHHhcCCCcc
Confidence            5899999999999999999999999999987654   666666666544                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       108 Ptl  110 (139)
T PRK10996        108 PTI  110 (139)
T ss_pred             CEE
Confidence            853

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.7e-09  Score=87.36  Aligned_cols=95  Identities=23%  Similarity=0.358  Sum_probs=77.1

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      ...++| |++.+|+ ++|++++||.|+|+|| ..|+|.|...+-.|.+.+.++++.|  .+|+.||.|.. .+.++|..+
T Consensus         8 ~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~-~~~~~F~~k   84 (157)
T COG1225           8 DKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSP-KSHKKFAEK   84 (157)
T ss_pred             CcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHH
Confidence            345677 9999999 9999999999999999 7899999999999999999999987  88999999953 444555444


Q ss_pred             CC--CcccccccceeeeccccCC
Q 018266           99 SD--GTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        99 ~~--~~~~~~~~~~l~~~~gi~~  119 (358)
                      ..  ..++.+....+++.||+..
T Consensus        85 ~~L~f~LLSD~~~~v~~~ygv~~  107 (157)
T COG1225          85 HGLTFPLLSDEDGEVAEAYGVWG  107 (157)
T ss_pred             hCCCceeeECCcHHHHHHhCccc
Confidence            22  3667777777888887643

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=98.96  E-value=1.3e-09  Score=94.79  Aligned_cols=70  Identities=13%  Similarity=0.260  Sum_probs=55.2

Q ss_pred             CCcEEEEEEec---cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          169 AGKTIGLYFGA---HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       169 ~~k~vlv~F~a---~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ++...++.|++   +||++|+.+.|.+.++.+++.     ++++..+.+|.+.                     ...+++
T Consensus        18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~---------------------~~~l~~   71 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP-----KLKLEIYDFDTPE---------------------DKEEAE   71 (215)
T ss_pred             CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC-----CceEEEEecCCcc---------------------cHHHHH
Confidence            44445556777   999999999999999998874     3556677777543                     478999


Q ss_pred             HcCCCceeeEEEECCCCcEE
Q 018266          246 IFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~  265 (358)
                      +|+|.++||++++ ++|+.+
T Consensus        72 ~~~V~~~Pt~~~f-~~g~~~   90 (215)
T TIGR02187        72 KYGVERVPTTIIL-EEGKDG   90 (215)
T ss_pred             HcCCCccCEEEEE-eCCeee
Confidence            9999999999999 566665

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=98.95  E-value=1.1e-09  Score=83.65  Aligned_cols=64  Identities=23%  Similarity=0.514  Sum_probs=50.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|.||++||++|+.+.|.+.++++.+...+ .+.++.++++.+..                  ..++++|+|.++
T Consensus        16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~------------------~~~~~~~~i~~~   76 (104)
T cd02997          16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDG-KGVLAAVDCTKPEH------------------DALKEEYNVKGF   76 (104)
T ss_pred             hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCC-ceEEEEEECCCCcc------------------HHHHHhCCCccc
Confidence            46799999999999999999999999999987532 25566666654212                  357888999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        77 Pt~   79 (104)
T cd02997          77 PTF   79 (104)
T ss_pred             cEE
Confidence            964

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.94  E-value=1.5e-09  Score=114.27  Aligned_cols=90  Identities=17%  Similarity=0.278  Sum_probs=69.9

Q ss_pred             CCCc-eec-ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe---cC--ChhHHHHHHhhCCC--
Q 018266           31 RQGK-VPL-SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF---DH--DENGFEEHFKSSDG--  101 (358)
Q Consensus        31 ~~g~-v~l-~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~---d~--~~~~~~~~~~~~~~--  101 (358)
                      .+|+ +++ ++++||+|+|+|||+||++|+..+|.|+++++++++++  +.++.|++   |.  +.+.++++..+...  
T Consensus       407 ~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~--~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~  484 (1057)
T PLN02919        407 LNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQP--FTVVGVHSAKFDNEKDLEAIRNAVLRYNISH  484 (1057)
T ss_pred             cCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCC--eEEEEEecccccccccHHHHHHHHHHhCCCc
Confidence            5788 888 58999999999999999999999999999999998765  88888874   32  33455555554222  


Q ss_pred             cccccccceeeeccccCCCCc
Q 018266          102 TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 ~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .++.+....+.++|++.++|+
T Consensus       485 pvv~D~~~~~~~~~~V~~iPt  505 (1057)
T PLN02919        485 PVVNDGDMYLWRELGVSSWPT  505 (1057)
T ss_pred             cEEECCchHHHHhcCCCccce
Confidence            334455567888999999995

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.94  E-value=7.2e-09  Score=76.69  Aligned_cols=68  Identities=26%  Similarity=0.593  Sum_probs=57.7

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      ++++|.||++||++|..+.+.+.++.+. .    .++.++.++.+..                       ..+.+.|++.
T Consensus        11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~----~~~~~~~i~~~~~-----------------------~~~~~~~~v~   62 (93)
T cd02947          11 KPVVVDFWAPWCGPCKAIAPVLEELAEE-Y----PKVKFVKVDVDEN-----------------------PELAEEYGVR   62 (93)
T ss_pred             CcEEEEEECCCChhHHHhhHHHHHHHHH-C----CCceEEEEECCCC-----------------------hhHHHhcCcc
Confidence            7899999999999999999999999887 2    6678888887753                       5788999999


Q ss_pred             ceeeEEEECCCCcEEec
Q 018266          251 GIPALVLIGPDGKTIST  267 (358)
Q Consensus       251 ~~P~~~lid~~G~v~~~  267 (358)
                      ++|+++++ ++|+++..
T Consensus        63 ~~P~~~~~-~~g~~~~~   78 (93)
T cd02947          63 SIPTFLFF-KNGKEVDR   78 (93)
T ss_pred             cccEEEEE-ECCEEEEE
Confidence            99999999 56665544

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.93  E-value=5.2e-09  Score=103.53  Aligned_cols=74  Identities=22%  Similarity=0.457  Sum_probs=57.7

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      .+||+|+|+||++||++|+.+.+..   .++.++++     ++.++.++++.+.                   +...++.
T Consensus       472 ~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~~-------------------~~~~~l~  527 (571)
T PRK00293        472 GKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-----DTVLLQADVTANN-------------------AEDVALL  527 (571)
T ss_pred             hcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCCC-------------------hhhHHHH
Confidence            3589999999999999999988764   45656553     3566666665431                   1246889


Q ss_pred             HHcCCCceeeEEEECCCCcEE
Q 018266          245 RIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~  265 (358)
                      ++|++.++|+++++|++|+++
T Consensus       528 ~~~~v~g~Pt~~~~~~~G~~i  548 (571)
T PRK00293        528 KHYNVLGLPTILFFDAQGQEI  548 (571)
T ss_pred             HHcCCCCCCEEEEECCCCCCc
Confidence            999999999999999999985

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.93  E-value=2.5e-09  Score=87.35  Aligned_cols=91  Identities=21%  Similarity=0.313  Sum_probs=67.0

Q ss_pred             cc-ccCCCCc-eecccCC-CC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC--
Q 018266           26 EF-LLSRQGK-VPLSSCG-GK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS--   99 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~-gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~--   99 (358)
                      ++ +.+.+|+ ++++++. +| +|+++|+++||++|+..+|.|.++++++.+.+  ++++.|+.|..+. ..++....  
T Consensus         4 ~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~--v~vv~V~~~~~~~-~~~~~~~~~~   80 (149)
T cd02970           4 DFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALG--VELVAVGPESPEK-LEAFDKGKFL   80 (149)
T ss_pred             CccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcC--eEEEEEeCCCHHH-HHHHHHhcCC
Confidence            44 7788999 9999874 45 55555569999999999999999999998777  9999999886543 33343332  


Q ss_pred             CCcccccccceeeeccccCC
Q 018266          100 DGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus       100 ~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ...++.+....+.+.||+..
T Consensus        81 ~~p~~~D~~~~~~~~~g~~~  100 (149)
T cd02970          81 PFPVYADPDRKLYRALGLVR  100 (149)
T ss_pred             CCeEEECCchhHHHHcCcee
Confidence            22555666667778888743

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=98.93  E-value=1.2e-08  Score=87.26  Aligned_cols=119  Identities=19%  Similarity=0.338  Sum_probs=95.4

Q ss_pred             CCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHHhhh
Q 018266          152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHS  226 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~  226 (358)
                      .+|.| +.+|+.++-.++.||++|++|..+.||. |..++..|.++.+++.+..+....=+||++|.   +.+...++++
T Consensus       120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~  199 (280)
T KOG2792|consen  120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVS  199 (280)
T ss_pred             CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHH
Confidence            46888 9999999999999999999999999998 99999999999998875433444468999998   5567777777


Q ss_pred             cCC--ccccccCchhHHHHHHHcCCCc--ee-------------eEEEECCCCcEEecCcc
Q 018266          227 IMP--WLAIPYEDRARQDLCRIFNIKG--IP-------------ALVLIGPDGKTISTNGK  270 (358)
Q Consensus       227 ~~~--~~~~~~~~~~~~~l~~~~~v~~--~P-------------~~~lid~~G~v~~~~g~  270 (358)
                      .+.  .+.++...+..+.++++|.|.-  -|             .+|||||+|+.+..-|+
T Consensus       200 eF~pkllGLTGT~eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~Gr  260 (280)
T KOG2792|consen  200 EFHPKLLGLTGTTEQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGR  260 (280)
T ss_pred             hcChhhhcccCCHHHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcc
Confidence            543  4566666777889999998832  13             47999999999977543

>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=5.2e-10  Score=105.91  Aligned_cols=136  Identities=18%  Similarity=0.254  Sum_probs=87.6

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      .+.++|.||+|||+||+.++|.|.++++.++. +..+.+..++++..                    ..+++++++..||
T Consensus       162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~-~~~v~~~~~d~~~~--------------------~~~~~~~~v~~~P  220 (383)
T KOG0191|consen  162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKS-KENVELGKIDATVH--------------------KSLASRLEVRGYP  220 (383)
T ss_pred             CcceEEEEeccccHHhhhcChHHHHHHHHhcc-CcceEEEeeccchH--------------------HHHhhhhcccCCc
Confidence            57899999999999999999999999999876 43466766666522                    2578888899998


Q ss_pred             cchHhHHH--HHhhhhhhhccchhhHhhhhccCC----cee-cCCCce-eee--cc--------cCCcEEEEEEeccCCc
Q 018266          122 FTRKRREE--LKAIDDSKRQGGKLEQLLAIEGRD----YVL-SRDHRK-ITV--SE--------LAGKTIGLYFGAHWCP  183 (358)
Q Consensus       122 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~p~----f~l-~~~g~~-~~l--~~--------~~~k~vlv~F~a~wC~  183 (358)
                      +..-....  ....+...+....+...+.....+    -.+ ...+.. ...  .+        ..-+..++.|+++||.
T Consensus       221 t~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  300 (383)
T KOG0191|consen  221 TLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKERRNIPEPELKEIEDKDTFSPTFLDTAEFLDSLEKKKNKFVKFYAPWCG  300 (383)
T ss_pred             eEEEecCCCcccccccccccHHHHHHHHHhhcCCCCCCcccccccCccccccchhhhhhhhhhhHHhhhhHhhhhcchhh
Confidence            74322211  123334445555555554433222    111 111110 111  11        1124578889999999


Q ss_pred             ccHhhHHHHHHHHHH
Q 018266          184 PCRSFTSQLIEVYNE  198 (358)
Q Consensus       184 ~C~~~~~~l~~l~~~  198 (358)
                      +|....|.+...+..
T Consensus       301 ~~~~~~~~~~~~~~~  315 (383)
T KOG0191|consen  301 HCGGFAPVYEDKAEL  315 (383)
T ss_pred             cccccchhHHHHHhc
Confidence            999999999887776

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=98.92  E-value=1.7e-09  Score=82.48  Aligned_cols=61  Identities=20%  Similarity=0.481  Sum_probs=47.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|+||++||++|+.+.|.|.++++.++.. ..+.++.++++.+                     +++..+++.++
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~---------------------~~~~~~~~~~~   74 (104)
T cd02995          17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGD-DNVVIAKMDATAN---------------------DVPSEFVVDGF   74 (104)
T ss_pred             CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCC-CCEEEEEEeCcch---------------------hhhhhccCCCC
Confidence            3689999999999999999999999999998662 2366666666543                     24566777888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (104)
T cd02995          75 PTI   77 (104)
T ss_pred             CEE
Confidence            853

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=98.92  E-value=1.7e-09  Score=82.12  Aligned_cols=62  Identities=21%  Similarity=0.527  Sum_probs=49.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|.||++||++|+.+.|.|+++++.++..+ .+.++.++++...                    .++++|++.++
T Consensus        12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~--------------------~~~~~~~i~~~   70 (102)
T TIGR01126        12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEK--------------------DLASRFGVSGF   70 (102)
T ss_pred             cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchH--------------------HHHHhCCCCcC
Confidence            68999999999999999999999999999987642 3556655555433                    56788899999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        71 P~~   73 (102)
T TIGR01126        71 PTI   73 (102)
T ss_pred             CEE
Confidence            953

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.92  E-value=2.5e-09  Score=89.45  Aligned_cols=102  Identities=14%  Similarity=0.069  Sum_probs=66.3

Q ss_pred             ceecccccCcccccCCCC---c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEE------EEEEe
Q 018266           16 FLTVLASEGVEFLLSRQG---K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEV------IFISF   85 (358)
Q Consensus        16 ~~~~l~~~~~~~l~~~~g---~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~i------v~i~~   85 (358)
                      +-++-++..-+.+.+.++   + ++.++++||+++|.|||+||++|+.-+|.++++    ++.+  +.+      +.||.
T Consensus        29 ~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~--~~~~~y~~t~~IN~  102 (184)
T TIGR01626        29 VPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAK--FPPVKYQTTTIINA  102 (184)
T ss_pred             CCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcC--CCcccccceEEEEC
Confidence            334444444444443332   4 778889999999999999999999999999988    3334  777      88998


Q ss_pred             cCChhHHHHHHh----h---CCC--cccccccceeeeccccCCCCcc
Q 018266           86 DHDENGFEEHFK----S---SDG--TLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        86 d~~~~~~~~~~~----~---~~~--~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      |.+......|..    +   .++  .++.+....+...||+.+.|.+
T Consensus       103 dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T  149 (184)
T TIGR01626       103 DDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSA  149 (184)
T ss_pred             ccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCce
Confidence            865433333322    2   222  2444444456678888777753

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=98.91  E-value=1.6e-09  Score=84.26  Aligned_cols=57  Identities=16%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++|+|+||+|||++|+.+.|.|+++++++..    +.++.|+++..                     .++++|+|.++|
T Consensus        24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~---------------------~l~~~~~i~~~P   78 (113)
T cd02957          24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA---------------------FLVNYLDIKVLP   78 (113)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh---------------------HHHHhcCCCcCC
Confidence            58999999999999999999999999998743    45666555532                     357788888888


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        79 t~   80 (113)
T cd02957          79 TL   80 (113)
T ss_pred             EE
Confidence            53

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=98.91  E-value=2.5e-09  Score=81.74  Aligned_cols=63  Identities=24%  Similarity=0.538  Sum_probs=49.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|.||++||++|+.+.|.|.++++.++.. .++.++.++++.. .                  ..++++|++.++
T Consensus        17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~-~------------------~~~~~~~~i~~~   76 (105)
T cd02998          17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANE-DDVVIAKVDADEA-N------------------KDLAKKYGVSGF   76 (105)
T ss_pred             CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCC-CCEEEEEEECCCc-c------------------hhhHHhCCCCCc
Confidence            3679999999999999999999999999998732 2366666666541 1                  257888999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        77 P~~   79 (105)
T cd02998          77 PTL   79 (105)
T ss_pred             CEE
Confidence            964

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=98.90  E-value=1.6e-09  Score=88.46  Aligned_cols=47  Identities=28%  Similarity=0.531  Sum_probs=38.7

Q ss_pred             Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        33 g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      |+ ++++    ++.+|.|||+||++|++.+|.+.++++++   +  ++++.|+.|..
T Consensus        44 G~~~~l~----~~~lvnFWAsWCppCr~e~P~L~~l~~~~---~--~~Vi~Vs~d~~   91 (153)
T TIGR02738        44 GRHANQD----DYALVFFYQSTCPYCHQFAPVLKRFSQQF---G--LPVYAFSLDGQ   91 (153)
T ss_pred             chhhhcC----CCEEEEEECCCChhHHHHHHHHHHHHHHc---C--CcEEEEEeCCC
Confidence            44 5554    44599999999999999999999999887   2  67999998853

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=1.2e-09  Score=92.81  Aligned_cols=64  Identities=34%  Similarity=0.679  Sum_probs=52.0

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      -.|+...+|.|+|+|+|.||+||++++|.|..++.+|..      .|+..+|.++.                  ...+..
T Consensus        14 ~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~------aVFlkVdVd~c------------------~~taa~   69 (288)
T KOG0908|consen   14 RELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG------AVFLKVDVDEC------------------RGTAAT   69 (288)
T ss_pred             HhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc------cEEEEEeHHHh------------------hchhhh
Confidence            345555689999999999999999999999999999843      56666666654                  356788


Q ss_pred             cccCCCCc
Q 018266          115 YGADAYPF  122 (358)
Q Consensus       115 ~gi~~~P~  122 (358)
                      +||.+.|+
T Consensus        70 ~gV~amPT   77 (288)
T KOG0908|consen   70 NGVNAMPT   77 (288)
T ss_pred             cCcccCce
Confidence            99999996

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=3.6e-08  Score=77.87  Aligned_cols=111  Identities=19%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHHHh
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDLN  224 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~  224 (358)
                      +|.+ +.+|+.+++++++||++||.-.|+.|+...+ ...|+.||++|++   .++.|+++.++.       +.+++.++
T Consensus         7 d~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~---~Gf~VLgFPcNQF~~QEPg~~eEI~~f   82 (162)
T COG0386           7 DFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKD---KGFEVLGFPCNQFGGQEPGSDEEIAKF   82 (162)
T ss_pred             cceeeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhh---CCcEEEeccccccccCCCCCHHHHHHH
Confidence            4666 8999999999999999999999999999875 4569999999997   999999999863       55788888


Q ss_pred             hhcCCccccccCc----------hhHHHHHHHcC-------CCceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYED----------RARQDLCRIFN-------IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~----------~~~~~l~~~~~-------v~~~P~~~lid~~G~v~~~  267 (358)
                      ....-...+|...          ..-..|...-.       |..-=+-+|||++|+|+.|
T Consensus        83 C~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~R  142 (162)
T COG0386          83 CQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKR  142 (162)
T ss_pred             HHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEe
Confidence            8754445555421          11223333221       2223367999999999999

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=98.89  E-value=1.7e-09  Score=84.52  Aligned_cols=52  Identities=19%  Similarity=0.569  Sum_probs=40.7

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +..+..+||+|+|.|||+||++|+.+.|.+.+..+.... .  ..++.+++|.+.
T Consensus        12 l~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~--~~fv~v~vd~~~   63 (117)
T cd02959          12 IKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-S--HNFVMVNLEDDE   63 (117)
T ss_pred             HHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-c--CcEEEEEecCCC
Confidence            455566799999999999999999999999997775432 2  347777777654

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=98.89  E-value=3.2e-09  Score=80.15  Aligned_cols=60  Identities=23%  Similarity=0.505  Sum_probs=48.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+||++||++|+.+.|.+.++++++...   +.++.+++|.+.                    ++..++++.++
T Consensus        12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~---v~~~~id~d~~~--------------------~l~~~~~v~~v   68 (97)
T cd02949          12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGA---VHFVEIDIDEDQ--------------------EIAEAAGIMGT   68 (97)
T ss_pred             CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCH--------------------HHHHHCCCeec
Confidence            5799999999999999999999999999988653   677777776554                    35677788788


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        69 Pt~   71 (97)
T cd02949          69 PTV   71 (97)
T ss_pred             cEE
Confidence            753

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=98.88  E-value=2.5e-09  Score=84.81  Aligned_cols=73  Identities=23%  Similarity=0.408  Sum_probs=48.2

Q ss_pred             CCC-CEEEEEEeCCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           40 CGG-KTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        40 ~~g-k~vlv~F~a~wC~~C~~~~p~~~---~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .+| |+|+|.||++||++|+.++|.+.   ++.+.+++.   +.++.+++|.+.... .+    .+  .......++.+|
T Consensus        11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~i~~d~~~~~~-~~----~~--~~~~~~~l~~~~   80 (125)
T cd02951          11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAH---FVVVYINIDGDKEVT-DF----DG--EALSEKELARKY   80 (125)
T ss_pred             HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhh---eEEEEEEccCCceee-cc----CC--CCccHHHHHHHc
Confidence            468 99999999999999999999885   566666542   778888877543210 00    00  001123456777


Q ss_pred             ccCCCCc
Q 018266          116 GADAYPF  122 (358)
Q Consensus       116 gi~~~P~  122 (358)
                      ++.++|+
T Consensus        81 ~v~~~Pt   87 (125)
T cd02951          81 RVRFTPT   87 (125)
T ss_pred             CCccccE
Confidence            7777775

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=98.88  E-value=3.2e-09  Score=80.01  Aligned_cols=59  Identities=22%  Similarity=0.350  Sum_probs=45.7

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++|+|.||++||++|+.+.|.|.++++++..   ++.++.++.+..                    .+++++|++..+|
T Consensus        14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~--------------------~~~~~~~~i~~~P   70 (97)
T cd02984          14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEEL--------------------PEISEKFEITAVP   70 (97)
T ss_pred             CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccC--------------------HHHHHhcCCcccc
Confidence            79999999999999999999999999998722   255555544432                    2567888888888


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        71 t~   72 (97)
T cd02984          71 TF   72 (97)
T ss_pred             EE
Confidence            63

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PTZ00051 thioredoxin; Provisional

Probab=98.87  E-value=2.6e-09  Score=80.71  Aligned_cols=59  Identities=19%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|.||++||++|+.+.|.|.++++++.+    +.++.++++...                    .++++|++.++
T Consensus        17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~--------------------~~~~~~~v~~~   72 (98)
T PTZ00051         17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDELS--------------------EVAEKENITSM   72 (98)
T ss_pred             cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcchH--------------------HHHHHCCCcee
Confidence            478999999999999999999999999986532    556666665433                    46788888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (98)
T PTZ00051         73 PTF   75 (98)
T ss_pred             eEE
Confidence            863

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=98.87  E-value=5.1e-09  Score=88.52  Aligned_cols=80  Identities=20%  Similarity=0.289  Sum_probs=61.7

Q ss_pred             eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh------CCCcccccc
Q 018266           35 VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS------SDGTLIEED  107 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~------~~~~~~~~~  107 (358)
                      ++|++++||+++|.|| +.||+.|...++.|.++++++.+.+  ++++.||.|.. ....++...      ....++.+.
T Consensus        24 v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g--~~vigIS~D~~-~~~~a~~~~~~~~~~l~fpllsD~  100 (187)
T PRK10382         24 VTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLG--VDVYSVSTDTH-FTHKAWHSSSETIAKIKYAMIGDP  100 (187)
T ss_pred             EEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCC--CEEEEEeCCCH-HHHHHHHHhhccccCCceeEEEcC
Confidence            8889999999999999 9999999999999999999999887  89999999853 223333221      122455555


Q ss_pred             cceeeecccc
Q 018266          108 LIGLIEDYGA  117 (358)
Q Consensus       108 ~~~l~~~~gi  117 (358)
                      ...+++.||+
T Consensus       101 ~~~ia~~ygv  110 (187)
T PRK10382        101 TGALTRNFDN  110 (187)
T ss_pred             chHHHHHcCC
Confidence            5666666665

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=98.87  E-value=8.9e-09  Score=80.84  Aligned_cols=101  Identities=12%  Similarity=0.235  Sum_probs=63.5

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .-.+|+|+|+|++.||++|+.+...+-   ++.+..+    .++.+|-+..|...                      ...
T Consensus        20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~----~~Fv~V~l~~d~td----------------------~~~   73 (130)
T cd02960          20 KKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQ----EDFIMLNLVHETTD----------------------KNL   73 (130)
T ss_pred             HHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHH----hCeEEEEEEeccCC----------------------CCc
Confidence            346899999999999999999987542   2333332    34444444444221                      000


Q ss_pred             HHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhc
Q 018266          244 CRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG  299 (358)
Q Consensus       244 ~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  299 (358)
                      . ..+ .++|+++|+|++|+++.+-    .-.++...|-..+..+..|.+.+++..
T Consensus        74 ~-~~g-~~vPtivFld~~g~vi~~i----~Gy~~~~~~~y~~~~~~~~~~~m~~a~  123 (130)
T cd02960          74 S-PDG-QYVPRIMFVDPSLTVRADI----TGRYSNRLYTYEPADIPLLIENMKKAL  123 (130)
T ss_pred             C-ccC-cccCeEEEECCCCCCcccc----cccccCccceeCcCcHHHHHHHHHHHH
Confidence            0 122 5799999999999998763    224445556566666777766666544

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.87  E-value=1.4e-08  Score=96.64  Aligned_cols=68  Identities=18%  Similarity=0.423  Sum_probs=56.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-Hc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~  247 (358)
                      ++++++|+||++||++|+.+.|.+.+++++|..   .++.|+.|++|..                      ...++. .|
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~----------------------~~~la~~~~  418 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG---SGVKVAKFRADGD----------------------QKEFAKQEL  418 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCc----------------------chHHHHhhC
Confidence            578999999999999999999999999999974   5688888887733                      245664 69


Q ss_pred             CCCceeeEEEECCC
Q 018266          248 NIKGIPALVLIGPD  261 (358)
Q Consensus       248 ~v~~~P~~~lid~~  261 (358)
                      +|.++||++++.++
T Consensus       419 ~I~~~PTil~f~~g  432 (457)
T PLN02309        419 QLGSFPTILLFPKN  432 (457)
T ss_pred             CCceeeEEEEEeCC
Confidence            99999999999433

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=98.85  E-value=3.9e-09  Score=82.03  Aligned_cols=69  Identities=16%  Similarity=0.278  Sum_probs=51.8

Q ss_pred             CCCCEEEEEEeC-------CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceee
Q 018266           40 CGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLI  112 (358)
Q Consensus        40 ~~gk~vlv~F~a-------~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~  112 (358)
                      .+|++|+|.|||       +||++|+.+.|.++++++++...   +.++.|++|...             .+.+....+.
T Consensus        19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~---v~fv~Vdvd~~~-------------~w~d~~~~~~   82 (119)
T cd02952          19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPED---CVFIYCDVGDRP-------------YWRDPNNPFR   82 (119)
T ss_pred             cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCC---CEEEEEEcCCcc-------------cccCcchhhH
Confidence            358999999999       99999999999999999988643   678888877532             0001113567


Q ss_pred             eccccC-CCCcch
Q 018266          113 EDYGAD-AYPFTR  124 (358)
Q Consensus       113 ~~~gi~-~~P~~~  124 (358)
                      ..|+|. +.|+..
T Consensus        83 ~~~~I~~~iPT~~   95 (119)
T cd02952          83 TDPKLTTGVPTLL   95 (119)
T ss_pred             hccCcccCCCEEE
Confidence            888887 899743

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=98.85  E-value=1.1e-08  Score=79.46  Aligned_cols=51  Identities=14%  Similarity=0.085  Sum_probs=40.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ++++|+|+||+|||++|+.+.|.|+++++++..    +.++.|+++.......++
T Consensus        21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~   71 (113)
T cd02989          21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKL   71 (113)
T ss_pred             CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHC
Confidence            468999999999999999999999999987742    667777777665433333

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PRK13190 putative peroxiredoxin; Provisional

Probab=98.85  E-value=5.9e-09  Score=89.60  Aligned_cols=64  Identities=23%  Similarity=0.391  Sum_probs=54.2

Q ss_pred             cCccc-ccCCCCceecccCCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGKVPLSSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~v~l~~~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| +.+..|.+++++++||.++| .|++.||+.|...++.|.++++++++.+  ++++.|++|..
T Consensus         7 ~aP~F~~~~~~g~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~--~~vi~vS~D~~   72 (202)
T PRK13190          7 KAPDFTVNTTKGPIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLG--VELVGLSVDSI   72 (202)
T ss_pred             CCCCcEEecCCCcEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCH
Confidence            33566 55666669999999997766 5789999999999999999999999877  89999999964

>PRK13599 putative peroxiredoxin; Provisional

Probab=98.84  E-value=5.9e-09  Score=90.24  Aligned_cols=97  Identities=19%  Similarity=0.193  Sum_probs=71.3

Q ss_pred             cccccCccc-ccCCCCc-eecccCCCCEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHHH
Q 018266           19 VLASEGVEF-LLSRQGK-VPLSSCGGKTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFE   93 (358)
Q Consensus        19 ~l~~~~~~~-l~~~~g~-v~l~~~~gk~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~~   93 (358)
                      .+....++| +.+++|+ +.+++++||.+ |+.|++.||++|...++.|.++++++.+.|  ++++.||+|...  ..+.
T Consensus         3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~g--v~vigIS~D~~~~~~~w~   80 (215)
T PRK13599          3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELN--TELIGLSVDQVFSHIKWV   80 (215)
T ss_pred             CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCCHHHHHHHH
Confidence            455566788 7888999 88899999975 567789999999999999999999999887  899999999642  2344


Q ss_pred             HHHhh-----CCCcccccccceeeecccc
Q 018266           94 EHFKS-----SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        94 ~~~~~-----~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++..+     ....++.+...++++.||+
T Consensus        81 ~~i~~~~~~~i~fPil~D~~~~va~~yg~  109 (215)
T PRK13599         81 EWIKDNTNIAIPFPVIADDLGKVSNQLGM  109 (215)
T ss_pred             HhHHHhcCCCCceeEEECCCchHHHHcCC
Confidence            44332     1123444444455666654

>PTZ00102 disulphide isomerase; Provisional

Probab=98.84  E-value=9e-09  Score=100.57  Aligned_cols=72  Identities=17%  Similarity=0.398  Sum_probs=57.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +++.++|.||++||++|+.+.|.+.++++.++. ...++.+..|.++.                       ...++++|+
T Consensus        48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~-~~~~i~~~~vd~~~-----------------------~~~l~~~~~  103 (477)
T PTZ00102         48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKE-KKSEIVLASVDATE-----------------------EMELAQEFG  103 (477)
T ss_pred             cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHh-cCCcEEEEEEECCC-----------------------CHHHHHhcC
Confidence            468999999999999999999999999988864 22345555555544                       368999999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++|++++++.++.+
T Consensus       104 i~~~Pt~~~~~~g~~~  119 (477)
T PTZ00102        104 VRGYPTIKFFNKGNPV  119 (477)
T ss_pred             CCcccEEEEEECCceE
Confidence            9999999999655544

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=98.84  E-value=3.4e-09  Score=82.56  Aligned_cols=61  Identities=11%  Similarity=0.122  Sum_probs=48.2

Q ss_pred             CCEEEEEEeCCCChh--hh--hhhHHHHHHHHHHh-cCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018266           42 GKTICLFFSANWCRP--CK--TFTPQLVQLYDTLR-TRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG  116 (358)
Q Consensus        42 gk~vlv~F~a~wC~~--C~--~~~p~~~~~~~~l~-~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  116 (358)
                      ..+++++|||+||+|  |+  ++.|.+.+++.++- ..+  +.++.|++|.+.                    +++.+||
T Consensus        27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~--v~~~kVD~d~~~--------------------~La~~~~   84 (120)
T cd03065          27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKG--IGFGLVDSKKDA--------------------KVAKKLG   84 (120)
T ss_pred             CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCC--CEEEEEeCCCCH--------------------HHHHHcC
Confidence            468999999999977  99  88899998888873 333  777777777654                    5789999


Q ss_pred             cCCCCcch
Q 018266          117 ADAYPFTR  124 (358)
Q Consensus       117 i~~~P~~~  124 (358)
                      |.++|+..
T Consensus        85 I~~iPTl~   92 (120)
T cd03065          85 LDEEDSIY   92 (120)
T ss_pred             CccccEEE
Confidence            99999743

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.84  E-value=2.6e-09  Score=93.20  Aligned_cols=91  Identities=19%  Similarity=0.359  Sum_probs=72.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      ..+|+|.|||.||+.+++++|.|++++..+++..++-.+|..++|++.+.                  .++.+|.|..||
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~------------------~ia~ky~I~KyP   74 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKED------------------DIADKYHINKYP   74 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhh------------------HHhhhhccccCc
Confidence            47899999999999999999999999999999887788999999998763                  789999999999


Q ss_pred             cchHhHHH--HHhhhhhhhccchhhHhhhhc
Q 018266          122 FTRKRREE--LKAIDDSKRQGGKLEQLLAIE  150 (358)
Q Consensus       122 ~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~  150 (358)
                      +.+.+...  ....+.+.+..+.+...+..+
T Consensus        75 TlKvfrnG~~~~rEYRg~RsVeaL~efi~kq  105 (375)
T KOG0912|consen   75 TLKVFRNGEMMKREYRGQRSVEALIEFIEKQ  105 (375)
T ss_pred             eeeeeeccchhhhhhccchhHHHHHHHHHHH
Confidence            87665542  222455555556666665544

>TIGR01068 thioredoxin thioredoxin

Probab=98.84  E-value=5.5e-09  Score=79.10  Aligned_cols=58  Identities=26%  Similarity=0.600  Sum_probs=47.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++++|+||++||++|+.+.|.|.++++++...   +.++.++++.+.                    .++++|++..+|
T Consensus        14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~P   70 (101)
T TIGR01068        14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGK---VKFVKLNVDENP--------------------DIAAKYGIRSIP   70 (101)
T ss_pred             CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCC---eEEEEEECCCCH--------------------HHHHHcCCCcCC
Confidence            679999999999999999999999999888643   778888777654                    356777887777


Q ss_pred             c
Q 018266          122 F  122 (358)
Q Consensus       122 ~  122 (358)
                      +
T Consensus        71 ~   71 (101)
T TIGR01068        71 T   71 (101)
T ss_pred             E
Confidence            5

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PLN02309 5'-adenylylsulfate reductase

Probab=98.83  E-value=4.2e-09  Score=100.18  Aligned_cols=63  Identities=17%  Similarity=0.379  Sum_probs=51.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeee-ccccCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIE-DYGADA  119 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~gi~~  119 (358)
                      ++|+++|+||||||++|+.+.|.|.++++++...+  +.++.+++|.+..                   .++. +|+|.+
T Consensus       364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~--V~f~kVD~d~~~~-------------------~la~~~~~I~~  422 (457)
T PLN02309        364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSG--VKVAKFRADGDQK-------------------EFAKQELQLGS  422 (457)
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCC--eEEEEEECCCcch-------------------HHHHhhCCCce
Confidence            68999999999999999999999999999997654  7787777773322                   3554 589999


Q ss_pred             CCcch
Q 018266          120 YPFTR  124 (358)
Q Consensus       120 ~P~~~  124 (358)
                      ||+..
T Consensus       423 ~PTil  427 (457)
T PLN02309        423 FPTIL  427 (457)
T ss_pred             eeEEE
Confidence            99743

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7.3e-08  Score=77.53  Aligned_cols=115  Identities=21%  Similarity=0.258  Sum_probs=91.9

Q ss_pred             ccCCcee----cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHHHH
Q 018266          150 EGRDYVL----SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKEFD  222 (358)
Q Consensus       150 ~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~~~  222 (358)
                      ++|+|.-    +..-+.+++++++||+|++.||... .-.|..++-.+...+.+|++   -+-+|+++++|..  .-+|.
T Consensus         9 p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~---~n~eVig~S~DS~fshlAW~   85 (196)
T KOG0852|consen    9 PAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRK---LNTEVLGISTDSVFSHLAWI   85 (196)
T ss_pred             CCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHh---cCCeEEEEeccchhhhhhHh
Confidence            4466643    5555688999999999999998544 34599999999999999987   8899999999974  35666


Q ss_pred             HhhhcCC---ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          223 LNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       223 ~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ..-++..   -.++|...|.+.++++.|||-      .+..+++||++|.++..
T Consensus        86 ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~i  139 (196)
T KOG0852|consen   86 NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQI  139 (196)
T ss_pred             cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEe
Confidence            6655444   356999999999999999983      46789999999998764

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.81  E-value=3.1e-08  Score=69.19  Aligned_cols=63  Identities=17%  Similarity=0.261  Sum_probs=49.6

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|+++||++|+...+.|+++.+.+     .++.+..+.++..                       .++++.|++.++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~-----~~i~~~~id~~~~-----------------------~~l~~~~~i~~vP   54 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALN-----PNISAEMIDAAEF-----------------------PDLADEYGVMSVP   54 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhC-----CceEEEEEEcccC-----------------------HhHHHHcCCcccC
Confidence            56899999999999999999886654     4577777776654                       5688899999999


Q ss_pred             eEEEECCCCcEEec
Q 018266          254 ALVLIGPDGKTIST  267 (358)
Q Consensus       254 ~~~lid~~G~v~~~  267 (358)
                      ++++   +|++++.
T Consensus        55 ti~i---~~~~~~~   65 (67)
T cd02973          55 AIVI---NGKVEFV   65 (67)
T ss_pred             EEEE---CCEEEEe
Confidence            9865   4566654

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=98.80  E-value=6.5e-08  Score=75.29  Aligned_cols=76  Identities=13%  Similarity=0.228  Sum_probs=55.1

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .-++|+++|+|+++||++|..+... |  .++.+.++    .+  +|.+..|.+.                   .....+
T Consensus        14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~----~~--~v~~~~d~~~-------------------~e~~~~   68 (114)
T cd02958          14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR----EN--FIFWQCDIDS-------------------SEGQRF   68 (114)
T ss_pred             HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH----hC--EEEEEecCCC-------------------ccHHHH
Confidence            3457999999999999999998653 2  23334443    33  4444444321                   014678


Q ss_pred             HHHcCCCceeeEEEECC-CCcEEec
Q 018266          244 CRIFNIKGIPALVLIGP-DGKTIST  267 (358)
Q Consensus       244 ~~~~~v~~~P~~~lid~-~G~v~~~  267 (358)
                      +..|++.++|+++++|+ +|+++.+
T Consensus        69 ~~~~~~~~~P~~~~i~~~~g~~l~~   93 (114)
T cd02958          69 LQSYKVDKYPHIAIIDPRTGEVLKV   93 (114)
T ss_pred             HHHhCccCCCeEEEEeCccCcEeEE
Confidence            99999999999999999 8999887

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=98.80  E-value=3.1e-08  Score=96.26  Aligned_cols=71  Identities=23%  Similarity=0.497  Sum_probs=57.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|.|||+||++|+.+.|.+.++++.+.. .+.++.++.|.++.                       ...++++|+
T Consensus        17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~-~~~~v~~~~vd~~~-----------------------~~~l~~~~~   72 (462)
T TIGR01130        17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKK-KGPPIKLAKVDATE-----------------------EKDLAQKYG   72 (462)
T ss_pred             cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhh-cCCceEEEEEECCC-----------------------cHHHHHhCC
Confidence            467899999999999999999999999998875 22346666666654                       368999999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++||++++ ++|+.
T Consensus        73 i~~~Pt~~~~-~~g~~   87 (462)
T TIGR01130        73 VSGYPTLKIF-RNGED   87 (462)
T ss_pred             CccccEEEEE-eCCcc
Confidence            9999999999 55554

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=98.80  E-value=6.7e-09  Score=79.20  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=50.5

Q ss_pred             CCCEEEEEEeCCC--ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        41 ~gk~vlv~F~a~w--C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      .|..++|.||++|  ||+|+.+.|.|+++++++.+.   +.++.+++|.+.                    .++.+|+|+
T Consensus        26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~---v~f~kVdid~~~--------------------~la~~f~V~   82 (111)
T cd02965          26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR---FRAAVVGRADEQ--------------------ALAARFGVL   82 (111)
T ss_pred             CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc---EEEEEEECCCCH--------------------HHHHHcCCC
Confidence            4678889999997  999999999999999998765   667777777655                    578888998


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      +.|+.
T Consensus        83 sIPTl   87 (111)
T cd02965          83 RTPAL   87 (111)
T ss_pred             cCCEE
Confidence            88864

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK15000 peroxidase; Provisional

Probab=98.80  E-value=1.1e-08  Score=87.76  Aligned_cols=94  Identities=22%  Similarity=0.387  Sum_probs=64.0

Q ss_pred             ccCccc-ccCC--CCc-eec---ccC-CCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--h
Q 018266           22 SEGVEF-LLSR--QGK-VPL---SSC-GGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--N   90 (358)
Q Consensus        22 ~~~~~~-l~~~--~g~-v~l---~~~-~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~   90 (358)
                      ...++| +.+.  +|+ +++   +++ +||+++|+||+ .||+.|...+|.|.++++++++.+  ++|+.|++|...  .
T Consensus         6 ~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g--~~vigvS~D~~~~~~   83 (200)
T PRK15000          6 RQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRG--VEVVGVSFDSEFVHN   83 (200)
T ss_pred             CcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence            344566 4543  344 444   444 79999999998 599999999999999999999887  999999999643  2


Q ss_pred             HHHHHHhhC------CCcccccccceeeecccc
Q 018266           91 GFEEHFKSS------DGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        91 ~~~~~~~~~------~~~~~~~~~~~l~~~~gi  117 (358)
                      .+.+...+.      ...++.+....+++.||+
T Consensus        84 ~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv  116 (200)
T PRK15000         84 AWRNTPVDKGGIGPVKYAMVADVKREIQKAYGI  116 (200)
T ss_pred             HHHhhHHHhCCccccCceEEECCCcHHHHHcCC
Confidence            222222111      223445555566666665

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=1.1e-09  Score=103.43  Aligned_cols=64  Identities=23%  Similarity=0.554  Sum_probs=57.3

Q ss_pred             CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCc
Q 018266           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      |..+|+||++|||||+.|+|.|+++++.+....+-+.|.+|+|-.+++                  ..+|++|+|..||+
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N------------------~~lCRef~V~~~Pt  119 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEEN------------------VKLCREFSVSGYPT  119 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhh------------------hhhHhhcCCCCCce
Confidence            588999999999999999999999999999988888899999976665                  48999999999996


Q ss_pred             ch
Q 018266          123 TR  124 (358)
Q Consensus       123 ~~  124 (358)
                      ..
T Consensus       120 lr  121 (606)
T KOG1731|consen  120 LR  121 (606)
T ss_pred             ee
Confidence            43

>PHA02125 thioredoxin-like protein

Probab=98.77  E-value=2.2e-08  Score=71.62  Aligned_cols=57  Identities=32%  Similarity=0.605  Sum_probs=41.8

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.||++||++|+...|.|.++.          +.++-|+.|.                       ..+++++|+|.++|
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~----------~~~~~vd~~~-----------------------~~~l~~~~~v~~~P   48 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE----------YTYVDVDTDE-----------------------GVELTAKHHIRSLP   48 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh----------heEEeeeCCC-----------------------CHHHHHHcCCceeC
Confidence            68999999999999999886541          2233344333                       36889999999999


Q ss_pred             eEEEECCCCcEEec
Q 018266          254 ALVLIGPDGKTIST  267 (358)
Q Consensus       254 ~~~lid~~G~v~~~  267 (358)
                      |++    +|+.+.+
T Consensus        49 T~~----~g~~~~~   58 (75)
T PHA02125         49 TLV----NTSTLDR   58 (75)
T ss_pred             eEE----CCEEEEE
Confidence            987    4655543

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.77  E-value=3.3e-08  Score=70.86  Aligned_cols=60  Identities=13%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018266          175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  254 (358)
Q Consensus       175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~  254 (358)
                      |.||++||++|+...|.+.++.+++.    ..+.+  +.+|.                        ...+.+|++.++|+
T Consensus         3 i~~~a~~C~~C~~~~~~~~~~~~e~~----~~~~~--~~v~~------------------------~~~a~~~~v~~vPt   52 (76)
T TIGR00412         3 IQIYGTGCANCQMTEKNVKKAVEELG----IDAEF--EKVTD------------------------MNEILEAGVTATPG   52 (76)
T ss_pred             EEEECCCCcCHHHHHHHHHHHHHHcC----CCeEE--EEeCC------------------------HHHHHHcCCCcCCE
Confidence            78999999999999999999999886    34454  55552                        12256799999999


Q ss_pred             EEEECCCCcEEec
Q 018266          255 LVLIGPDGKTIST  267 (358)
Q Consensus       255 ~~lid~~G~v~~~  267 (358)
                      +++   +|+++..
T Consensus        53 i~i---~G~~~~~   62 (76)
T TIGR00412        53 VAV---DGELVIM   62 (76)
T ss_pred             EEE---CCEEEEE
Confidence            998   8887733

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.75  E-value=1.6e-08  Score=76.31  Aligned_cols=62  Identities=26%  Similarity=0.569  Sum_probs=49.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|.||++||++|+.+.|.|.++++.++. ...+.++.++++.+.                    .++++|+|..+
T Consensus        14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~--------------------~~~~~~~i~~~   72 (101)
T cd02961          14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANN--------------------DLCSEYGVRGY   72 (101)
T ss_pred             CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchH--------------------HHHHhCCCCCC
Confidence            456999999999999999999999999999851 122667777666533                    57888899999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (101)
T cd02961          73 PTI   75 (101)
T ss_pred             CEE
Confidence            964

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]

Probab=98.74  E-value=7.1e-09  Score=90.28  Aligned_cols=79  Identities=23%  Similarity=0.327  Sum_probs=61.8

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      ..++|.||||||++|+++.|.+.++--++++   .+.-|-.-.+|.+.                     ...++..|+|+
T Consensus        44 diW~VdFYAPWC~HCKkLePiWdeVG~elkd---ig~PikVGKlDaT~---------------------f~aiAnefgiq   99 (468)
T KOG4277|consen   44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKD---IGLPIKVGKLDATR---------------------FPAIANEFGIQ   99 (468)
T ss_pred             CeEEEEeechhhhhcccccchhHHhCcchhh---cCCceeeccccccc---------------------chhhHhhhccC
Confidence            6899999999999999999999999888876   44444444556553                     46899999999


Q ss_pred             ceeeEEEECCCCcEEecCcchhh
Q 018266          251 GIPALVLIGPDGKTISTNGKEMI  273 (358)
Q Consensus       251 ~~P~~~lid~~G~v~~~~g~~~~  273 (358)
                      ++||+.++..+--+-+|+||...
T Consensus       100 GYPTIk~~kgd~a~dYRG~R~Kd  122 (468)
T KOG4277|consen  100 GYPTIKFFKGDHAIDYRGGREKD  122 (468)
T ss_pred             CCceEEEecCCeeeecCCCccHH
Confidence            99999999444455567666533

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.74  E-value=3e-08  Score=75.57  Aligned_cols=64  Identities=20%  Similarity=0.282  Sum_probs=55.6

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      ++++++.|+++||++|..+.|.+.+++++++    .++.++.|+.|.                       ...+++.|++
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~----~~v~f~~vd~~~-----------------------~~~~~~~~~i   64 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFK----GKLLFVVVDADD-----------------------FGRHLEYFGL   64 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhC----CeEEEEEEchHh-----------------------hHHHHHHcCC
Confidence            7899999999999999999999999999997    456666666654                       3578999999


Q ss_pred             C--ceeeEEEECC
Q 018266          250 K--GIPALVLIGP  260 (358)
Q Consensus       250 ~--~~P~~~lid~  260 (358)
                      .  ++|++++++.
T Consensus        65 ~~~~~P~~~~~~~   77 (103)
T cd02982          65 KEEDLPVIAIINL   77 (103)
T ss_pred             ChhhCCEEEEEec
Confidence            9  9999999966

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.73  E-value=6.1e-08  Score=71.61  Aligned_cols=71  Identities=18%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .++.+.+.+..|+++||++|+...+.+.++...+     .++.+..+..+..                       .++++
T Consensus         8 ~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-----~~i~~~~vd~~~~-----------------------~e~a~   59 (89)
T cd03026           8 RRLNGPINFETYVSLSCHNCPDVVQALNLMAVLN-----PNIEHEMIDGALF-----------------------QDEVE   59 (89)
T ss_pred             HhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHC-----CCceEEEEEhHhC-----------------------HHHHH
Confidence            4567788899999999999999999999988766     3467777776643                       57899


Q ss_pred             HcCCCceeeEEEECCCCcEEec
Q 018266          246 IFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|+|.++|++++   +|+++..
T Consensus        60 ~~~V~~vPt~vi---dG~~~~~   78 (89)
T cd03026          60 ERGIMSVPAIFL---NGELFGF   78 (89)
T ss_pred             HcCCccCCEEEE---CCEEEEe
Confidence            999999999975   6888776

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=98.73  E-value=3.7e-08  Score=76.45  Aligned_cols=58  Identities=26%  Similarity=0.457  Sum_probs=45.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      ++.++|+||++||++|+.+.|.++++++.+ +.   ++++.++.|...+                    ++++|++...|
T Consensus        22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~---i~~~~vd~d~~~~--------------------l~~~~~v~~vP   77 (113)
T cd02975          22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-DK---LKLEIYDFDEDKE--------------------KAEKYGVERVP   77 (113)
T ss_pred             CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-Cc---eEEEEEeCCcCHH--------------------HHHHcCCCcCC
Confidence            567899999999999999999999998875 22   7788888886553                    56667777777


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        78 t~   79 (113)
T cd02975          78 TT   79 (113)
T ss_pred             EE
Confidence            53

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>PRK13191 putative peroxiredoxin; Provisional

Probab=98.73  E-value=2.1e-08  Score=86.82  Aligned_cols=96  Identities=16%  Similarity=0.276  Sum_probs=67.9

Q ss_pred             ccccCccc-ccCCCCceec-ccCCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHHH
Q 018266           20 LASEGVEF-LLSRQGKVPL-SSCGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEE   94 (358)
Q Consensus        20 l~~~~~~~-l~~~~g~v~l-~~~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~~   94 (358)
                      +....++| +.+.+|++++ +.++||+++| .|++.||+.|...++.|.++++++++.|  ++++.||+|....  .+.+
T Consensus         9 iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g--~~VigvS~Ds~~~h~aw~~   86 (215)
T PRK13191          9 IGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLN--TELIGLSVDSNISHIEWVM   86 (215)
T ss_pred             CCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHh
Confidence            34455677 7778888656 4479997666 6679999999999999999999999887  8999999996533  3443


Q ss_pred             HHhh-----CCCcccccccceeeecccc
Q 018266           95 HFKS-----SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        95 ~~~~-----~~~~~~~~~~~~l~~~~gi  117 (358)
                      +..+     ....++.+....+++.||+
T Consensus        87 ~~~~~~~~~i~fPllsD~~~~ia~~ygv  114 (215)
T PRK13191         87 WIEKNLKVEVPFPIIADPMGNVAKRLGM  114 (215)
T ss_pred             hHHHhcCCCCceEEEECCchHHHHHcCC
Confidence            3322     1123444444555566654

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.72  E-value=5.5e-08  Score=74.98  Aligned_cols=70  Identities=13%  Similarity=0.159  Sum_probs=45.7

Q ss_pred             CCcEEEEEEec--cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          169 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       169 ~~k~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      +.+.+||.|+|  +||+   + .|.+.+|+.+|.. ....+.|.-|.++...                  ...+..|+++
T Consensus        17 ~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~-aa~~v~lakVd~~d~~------------------~~~~~~L~~~   73 (116)
T cd03007          17 KFKYSLVKFDTAYPYGE---K-HEAFTRLAESSAS-ATDDLLVAEVGIKDYG------------------EKLNMELGER   73 (116)
T ss_pred             cCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHh-hcCceEEEEEeccccc------------------chhhHHHHHH
Confidence            45789999999  6666   3 3666666666643 1233445445554210                  0114789999


Q ss_pred             cCCC--ceeeEEEECCCC
Q 018266          247 FNIK--GIPALVLIGPDG  262 (358)
Q Consensus       247 ~~v~--~~P~~~lid~~G  262 (358)
                      |+|+  ++||+.+| ++|
T Consensus        74 y~I~~~gyPTl~lF-~~g   90 (116)
T cd03007          74 YKLDKESYPVIYLF-HGG   90 (116)
T ss_pred             hCCCcCCCCEEEEE-eCC
Confidence            9999  99999999 445

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=98.72  E-value=2.3e-08  Score=88.42  Aligned_cols=96  Identities=14%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             ccccCccc-ccC-CCC--c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--h
Q 018266           20 LASEGVEF-LLS-RQG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--N   90 (358)
Q Consensus        20 l~~~~~~~-l~~-~~g--~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~   90 (358)
                      +....++| +.+ .+|  . ++++++ +||+++|.|| +.||++|...+|.|.++++++++.|  ++|+.|++|...  .
T Consensus        70 vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~  147 (261)
T PTZ00137         70 VGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHK  147 (261)
T ss_pred             CCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHH
Confidence            33445566 444 344  4 899998 8999999998 8999999999999999999999888  899999998632  2


Q ss_pred             HHHHHHhh------CCCcccccccceeeecccc
Q 018266           91 GFEEHFKS------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        91 ~~~~~~~~------~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+.+...+      ....++.+....+++.||+
T Consensus       148 aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv  180 (261)
T PTZ00137        148 AWKELDVRQGGVSPLKFPLFSDISREVSKSFGL  180 (261)
T ss_pred             HHHhhhhhhccccCcceEEEEcCChHHHHHcCC
Confidence            33332111      1123444445556666665

>TIGR02740 TraF-like TraF-like protein

Probab=98.71  E-value=1.1e-08  Score=91.64  Aligned_cols=75  Identities=19%  Similarity=0.195  Sum_probs=56.9

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      .+++++.|++++|+||++||++|+.++|.|.+++++++     ++|+.|++|.+...       ..+.+ . ....++++
T Consensus       159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~-------~fp~~-~-~d~~la~~  224 (271)
T TIGR02740       159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLP-------GFPNA-R-PDAGQAQQ  224 (271)
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccc-------cCCcc-c-CCHHHHHH
Confidence            77888999999999999999999999999999999873     77999999865321       01111 1 11245677


Q ss_pred             cccCCCCcc
Q 018266          115 YGADAYPFT  123 (358)
Q Consensus       115 ~gi~~~P~~  123 (358)
                      +||.+.|+.
T Consensus       225 ~gV~~vPtl  233 (271)
T TIGR02740       225 LKIRTVPAV  233 (271)
T ss_pred             cCCCcCCeE
Confidence            888888853

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=98.70  E-value=3.3e-08  Score=85.11  Aligned_cols=63  Identities=17%  Similarity=0.231  Sum_probs=53.1

Q ss_pred             Cccc-ccCCCCceecccCCC-CEE-EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           24 GVEF-LLSRQGKVPLSSCGG-KTI-CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        24 ~~~~-l~~~~g~v~l~~~~g-k~v-lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .++| +.+.+|.+++++++| |++ ++.|++.||+.|...++.|.++++++++.|  ++++.|++|..
T Consensus         5 aP~F~~~~~~g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~g--v~vigvS~D~~   70 (203)
T cd03016           5 APNFEADTTHGPIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRN--VKLIGLSVDSV   70 (203)
T ss_pred             CCCeEEecCCCcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEECCCH
Confidence            3456 666677799999988 655 557779999999999999999999999887  89999999964

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells

Probab=98.70  E-value=6.4e-09  Score=80.11  Aligned_cols=62  Identities=19%  Similarity=0.176  Sum_probs=44.4

Q ss_pred             CCCEEEEEEeC--CCCh---hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC---ChhHHHHHHhhCCCcccccccceee
Q 018266           41 GGKTICLFFSA--NWCR---PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKSSDGTLIEEDLIGLI  112 (358)
Q Consensus        41 ~gk~vlv~F~a--~wC~---~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~l~  112 (358)
                      +.+.+||.|||  |||+   ||++++|++.+.+..       +.|..|+++.   .++                  .+||
T Consensus        17 ~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~-------v~lakVd~~d~~~~~~------------------~~L~   71 (116)
T cd03007          17 KFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD-------LLVAEVGIKDYGEKLN------------------MELG   71 (116)
T ss_pred             cCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc-------eEEEEEecccccchhh------------------HHHH
Confidence            46899999999  9998   777777777664432       5566666642   222                  3799


Q ss_pred             eccccC--CCCcchHhH
Q 018266          113 EDYGAD--AYPFTRKRR  127 (358)
Q Consensus       113 ~~~gi~--~~P~~~~~~  127 (358)
                      .+|+|+  +||+...+.
T Consensus        72 ~~y~I~~~gyPTl~lF~   88 (116)
T cd03007          72 ERYKLDKESYPVIYLFH   88 (116)
T ss_pred             HHhCCCcCCCCEEEEEe
Confidence            999999  999765444

It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=98.68  E-value=4.1e-08  Score=84.28  Aligned_cols=58  Identities=28%  Similarity=0.315  Sum_probs=52.2

Q ss_pred             CCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        30 ~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +.+|. +++++++||+++|+|| +.||++|...++.|.++++++.+.+  ++|+.|++|...
T Consensus        23 ~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g--~~vv~IS~d~~~   82 (199)
T PTZ00253         23 NGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELN--CEVLACSMDSEY   82 (199)
T ss_pred             CCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCHH
Confidence            45667 9999999999999999 5889999999999999999999887  999999998654

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=98.67  E-value=3.6e-08  Score=82.57  Aligned_cols=57  Identities=16%  Similarity=0.254  Sum_probs=44.2

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++|+|.||++||++|+.+.|.|.++++++..    +.++.|+++..                     .++.+|+|.+.|
T Consensus        83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~---------------------~l~~~f~v~~vP  137 (175)
T cd02987          83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT---------------------GASDEFDTDALP  137 (175)
T ss_pred             CcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch---------------------hhHHhCCCCCCC
Confidence            45999999999999999999999999998742    55655555532                     356778888888


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus       138 Tl  139 (175)
T cd02987         138 AL  139 (175)
T ss_pred             EE
Confidence            53

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=98.66  E-value=9e-08  Score=83.75  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=63.3

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      ...|+|.|||.||+.++.+.|.+.+.++++++. -.+-++|+-.+|.+.                     ...++.+|.|
T Consensus        13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e-~P~~kvvwg~VDcd~---------------------e~~ia~ky~I   70 (375)
T KOG0912|consen   13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE-FPEGKVVWGKVDCDK---------------------EDDIADKYHI   70 (375)
T ss_pred             ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh-CCCcceEEEEcccch---------------------hhHHhhhhcc
Confidence            468999999999999999999999999998863 233578888888876                     5789999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      ..+||+-++ ++|.+..+
T Consensus        71 ~KyPTlKvf-rnG~~~~r   87 (375)
T KOG0912|consen   71 NKYPTLKVF-RNGEMMKR   87 (375)
T ss_pred             ccCceeeee-eccchhhh
Confidence            999999999 66666554

>PRK13189 peroxiredoxin; Provisional

Probab=98.64  E-value=7.3e-08  Score=83.96  Aligned_cols=67  Identities=25%  Similarity=0.323  Sum_probs=54.7

Q ss_pred             cccCccc-ccCCCCceeccc-CCCCEEEE-EEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           21 ASEGVEF-LLSRQGKVPLSS-CGGKTICL-FFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        21 ~~~~~~~-l~~~~g~v~l~~-~~gk~vlv-~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ....++| +.+..|.+++++ ++||+++| .|++.||+.|...++.|.++++++++.+  ++|+.||+|...
T Consensus        12 G~~aPdF~~~~~~g~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~--v~VigvS~D~~~   81 (222)
T PRK13189         12 GDKFPEFEVKTTHGPIKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELN--TELIGLSIDQVF   81 (222)
T ss_pred             CCcCCCcEeEcCCCCEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEECCCHH
Confidence            3455677 677788877777 49996555 6669999999999999999999999877  899999999643

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.64  E-value=4.5e-08  Score=71.23  Aligned_cols=56  Identities=18%  Similarity=0.292  Sum_probs=44.5

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        45 vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      .+..||++||++|+.+.|.+++++++++..   +.++.|+++.+.+                    ++++||+.++|+.
T Consensus         2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~vd~~~~~~--------------------~~~~~~v~~vPt~   57 (82)
T TIGR00411         2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA---VEVEYINVMENPQ--------------------KAMEYGIMAVPAI   57 (82)
T ss_pred             EEEEEECCCCcchHHHHHHHHHHHHHhcCc---eEEEEEeCccCHH--------------------HHHHcCCccCCEE
Confidence            467899999999999999999999988643   7788888776553                    4566777777754

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines

Probab=98.63  E-value=8.2e-09  Score=59.47  Aligned_cols=29  Identities=34%  Similarity=1.040  Sum_probs=14.3

Q ss_pred             eeecCcCCCCcc-eEEEcCCCCCCCCcccc
Q 018266          323 YVCDCCKMRGRF-WAFSCDVCNYDLHPKCV  351 (358)
Q Consensus       323 ~~C~~C~e~g~~-~~~~~~~~~~~~~~~~~  351 (358)
                      +.|+.|++++.+ |.|.|.+|||.||..||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca   30 (30)
T PF07649_consen    1 FRCDACGKPIDGGWFYRCSECDFDLHEECA   30 (30)
T ss_dssp             ---TTTS----S--EEE-TTT-----HHHH
T ss_pred             CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence            469999999988 99999999999999997

The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=98.60  E-value=8.3e-08  Score=75.44  Aligned_cols=43  Identities=16%  Similarity=0.415  Sum_probs=37.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .|+.++|+|+++|||+|+++.|.|.+++++.+     ..+..+++|.+
T Consensus        22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~-----~~~y~vdvd~~   64 (122)
T TIGR01295        22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTK-----APIYYIDSENN   64 (122)
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHhcC-----CcEEEEECCCc
Confidence            47889999999999999999999999988721     56999999854

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=5.4e-07  Score=72.23  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=80.7

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHHHh
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDLN  224 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~~  224 (358)
                      +|+. +.+|+.++++.++||++|+.--|+.|+.-..-...|+.|+++|+.   .+++|++..++.       ..+++..+
T Consensus        16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~---~Gl~ILaFPCNQFg~QEp~~n~Ei~~f   92 (171)
T KOG1651|consen   16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKD---QGLEILAFPCNQFGNQEPGSNEEILNF   92 (171)
T ss_pred             eeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhh---CCeEEEEeccccccCcCCCCcHHHHHH
Confidence            4666 999999999999999999999999999998777899999999987   999999999853       23455566


Q ss_pred             hhcCCcccccc------CchhHHHHHHHc----------CCCceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPY------EDRARQDLCRIF----------NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~------~~~~~~~l~~~~----------~v~~~P~~~lid~~G~v~~~  267 (358)
                      ....+...+|.      ..+....+.+.+          +|..==+-+|+|++|+++.|
T Consensus        93 ~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~lg~~IkWNF~KFLVd~~G~vv~R  151 (171)
T KOG1651|consen   93 VKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGPLGDDIKWNFTKFLVDKDGHVVKR  151 (171)
T ss_pred             HHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCcccccceeeeEEEeECCCCcEEEe
Confidence            55332222232      112122222221          12222367999999999998

>PHA02125 thioredoxin-like protein

Probab=98.59  E-value=2.2e-08  Score=71.63  Aligned_cols=50  Identities=26%  Similarity=0.540  Sum_probs=36.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcch
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTR  124 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~~  124 (358)
                      ++.||++||++|+.+.|.|+++.         +.+  +++|.++.                  .+++++|+|.++|+..
T Consensus         2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~--~~vd~~~~------------------~~l~~~~~v~~~PT~~   51 (75)
T PHA02125          2 IYLFGAEWCANCKMVKPMLANVE---------YTY--VDVDTDEG------------------VELTAKHHIRSLPTLV   51 (75)
T ss_pred             EEEEECCCCHhHHHHHHHHHHHh---------heE--EeeeCCCC------------------HHHHHHcCCceeCeEE
Confidence            78999999999999999986541         234  44443332                  2578889999999753

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.8e-07  Score=74.56  Aligned_cols=118  Identities=17%  Similarity=0.230  Sum_probs=86.7

Q ss_pred             chhhHhhhhccCCcee-cCCCceeeecccCCc-EEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018266          141 GKLEQLLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  217 (358)
Q Consensus       141 ~~l~~~~~~~~p~f~l-~~~g~~~~l~~~~~k-~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  217 (358)
                      ..+.--+|+.+|||++ +.+|..++|..+.++ +|+++||.. ..|-|.+..-.+..-|++++.   .+.+|++++.|..
T Consensus        59 ds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kk---a~aeV~GlS~D~s  135 (211)
T KOG0855|consen   59 DSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKK---AGAEVIGLSGDDS  135 (211)
T ss_pred             cceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhh---cCceEEeeccCch
Confidence            3334456899999999 999999999999885 888888743 445599999899999999986   7899999999865


Q ss_pred             HHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee-------eEEEECCCCc
Q 018266          218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP-------ALVLIGPDGK  263 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P-------~~~lid~~G~  263 (358)
                      . ..+.|..+ ..+.+....|+.+++.+.+|+...|       ..++|+++|.
T Consensus       136 ~-sqKaF~sK-qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~  186 (211)
T KOG0855|consen  136 A-SQKAFASK-QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGV  186 (211)
T ss_pred             H-HHHHhhhh-ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCe
Confidence            3 22222222 1133334678889999999987644       5677766653

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=98.57  E-value=3.8e-08  Score=76.22  Aligned_cols=83  Identities=27%  Similarity=0.493  Sum_probs=48.3

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-cccccccceeeeccccC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-TLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~gi~  118 (358)
                      .+||++++.|+.|||++|+.+.+.+.+..+-.......+.++.++++.+......... .++ .-+.....++...|||.
T Consensus         3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLD-FDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHS-HTCHSSCHHHHHHHHHHTT--
T ss_pred             CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccc-cccchhhhHHHHHHHHHcCCC
Confidence            4689999999999999999999999875553222212378888888765532222111 111 11111123567777777


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      ++|+.
T Consensus        82 gtPt~   86 (112)
T PF13098_consen   82 GTPTI   86 (112)
T ss_dssp             SSSEE
T ss_pred             ccCEE
Confidence            77753

...

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=98.55  E-value=1.6e-07  Score=77.18  Aligned_cols=92  Identities=21%  Similarity=0.266  Sum_probs=69.5

Q ss_pred             Cccc-ccCCC---Cc-eeccc-CCCCEEEEEEe-CCCChhhhhh-hHHHHHHHHHHhcCCCce-EEEEEEecCChhHHHH
Q 018266           24 GVEF-LLSRQ---GK-VPLSS-CGGKTICLFFS-ANWCRPCKTF-TPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEE   94 (358)
Q Consensus        24 ~~~~-l~~~~---g~-v~l~~-~~gk~vlv~F~-a~wC~~C~~~-~p~~~~~~~~l~~~~~~~-~iv~i~~d~~~~~~~~   94 (358)
                      .++| +.+.+   |. ++|++ ++||+++|+|| +.||+.|... ++.|.+.++++.+.|  . +|+.|+.|... +.++
T Consensus         5 aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~-~~~~   81 (155)
T cd03013           5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPF-VMKA   81 (155)
T ss_pred             CCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHH-HHHH
Confidence            3555 66664   88 99999 58988888888 8999999998 999999999999887  7 59999998543 3444


Q ss_pred             HHhhC----CCcccccccceeeeccccC
Q 018266           95 HFKSS----DGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        95 ~~~~~----~~~~~~~~~~~l~~~~gi~  118 (358)
                      +....    ...++.+...++++.||+.
T Consensus        82 ~~~~~~~~~~f~lLsD~~~~~~~~ygv~  109 (155)
T cd03013          82 WGKALGAKDKIRFLADGNGEFTKALGLT  109 (155)
T ss_pred             HHHhhCCCCcEEEEECCCHHHHHHcCCC
Confidence            44432    2356666667777777763

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>PF13728 TraF: F plasmid transfer operon protein

Probab=98.55  E-value=4.8e-07  Score=78.27  Aligned_cols=85  Identities=25%  Similarity=0.350  Sum_probs=67.2

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +..+.++.-|++|+.+.|++|..+.|.|..+.++|.      +.|+.|++|....           ..+|.... +..++
T Consensus       115 l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg------~~v~~vs~DG~~~-----------~~fp~~~~-~~g~~  176 (215)
T PF13728_consen  115 LKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYG------FSVIPVSLDGRPI-----------PSFPNPRP-DPGQA  176 (215)
T ss_pred             HHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC------CEEEEEecCCCCC-----------cCCCCCCC-CHHHH
Confidence            455667899999999999999999999999999986      7899999996421           12222211 46788


Q ss_pred             HHcCCCceeeEEEECCCCcEEec
Q 018266          245 RIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++++|..+|+++|+++++.....
T Consensus       177 ~~l~v~~~Pal~Lv~~~~~~~~p  199 (215)
T PF13728_consen  177 KRLGVKVTPALFLVNPNTKKWYP  199 (215)
T ss_pred             HHcCCCcCCEEEEEECCCCeEEE
Confidence            99999999999999998854444

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=98.50  E-value=2.3e-07  Score=68.45  Aligned_cols=57  Identities=30%  Similarity=0.669  Sum_probs=46.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++++|.||++||++|+.+.|.+.++++.  .  .++.++.++++.+.                    .++.+|++.++|
T Consensus        10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~--~~~~~~~i~~~~~~--------------------~~~~~~~v~~~P   65 (93)
T cd02947          10 AKPVVVDFWAPWCGPCKAIAPVLEELAEE--Y--PKVKFVKVDVDENP--------------------ELAEEYGVRSIP   65 (93)
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHH--C--CCceEEEEECCCCh--------------------hHHHhcCccccc
Confidence            48999999999999999999999999887  2  23778888877644                    456777888888


Q ss_pred             c
Q 018266          122 F  122 (358)
Q Consensus       122 ~  122 (358)
                      +
T Consensus        66 ~   66 (93)
T cd02947          66 T   66 (93)
T ss_pred             E
Confidence            5

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=98.48  E-value=2e-07  Score=73.27  Aligned_cols=50  Identities=14%  Similarity=0.165  Sum_probs=36.1

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +..+..++|+|+|+|+|+||++|+.|.+..   .++.+.++++   +.+|.++.+.
T Consensus         8 l~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~---fv~VkvD~~~   60 (124)
T cd02955           8 FEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNEN---FVPIKVDREE   60 (124)
T ss_pred             HHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCC---EEEEEEeCCc
Confidence            555666899999999999999999998743   3466666554   5555555443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=98.48  E-value=1.6e-07  Score=71.48  Aligned_cols=58  Identities=14%  Similarity=0.281  Sum_probs=47.3

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC--C
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD--A  119 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~--~  119 (358)
                      |+++++.|+++||++|+.+.|.+.++++++++.   +.++.|+++...                    .+++.||+.  .
T Consensus        12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~---v~f~~vd~~~~~--------------------~~~~~~~i~~~~   68 (103)
T cd02982          12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK---LLFVVVDADDFG--------------------RHLEYFGLKEED   68 (103)
T ss_pred             CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe---EEEEEEchHhhH--------------------HHHHHcCCChhh
Confidence            799999999999999999999999999999854   666666666433                    456777777  7


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        69 ~P~   71 (103)
T cd02982          69 LPV   71 (103)
T ss_pred             CCE
Confidence            775

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=98.47  E-value=7.6e-07  Score=74.65  Aligned_cols=66  Identities=33%  Similarity=0.568  Sum_probs=58.4

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...+| |++.+|+ +++++++||+++|.|....|+. |...+..+.++.+++.+.+.++++++|++|..
T Consensus        31 ~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~   99 (174)
T PF02630_consen   31 IVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPE   99 (174)
T ss_dssp             SSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTT
T ss_pred             cCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCC
Confidence            34566 9999999 9999999999999999999986 99999999999999988777899999999964

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>smart00594 UAS UAS domain

Probab=98.47  E-value=1.4e-06  Score=68.65  Aligned_cols=70  Identities=16%  Similarity=0.335  Sum_probs=50.1

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      -.+|.++|+|+++||++|..+....   .++.+.+.    .++.++.++++...                     ...++
T Consensus        25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~----~~fv~~~~dv~~~e---------------------g~~l~   79 (122)
T smart00594       25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIR----ENFIFWQVDVDTSE---------------------GQRVS   79 (122)
T ss_pred             hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHH----cCEEEEEecCCChh---------------------HHHHH
Confidence            3579999999999999999987643   22333333    33333334433322                     46899


Q ss_pred             HHcCCCceeeEEEECCCC
Q 018266          245 RIFNIKGIPALVLIGPDG  262 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G  262 (358)
                      ..|++.++|++++++++|
T Consensus        80 ~~~~~~~~P~~~~l~~~~   97 (122)
T smart00594       80 QFYKLDSFPYVAIVDPRT   97 (122)
T ss_pred             HhcCcCCCCEEEEEecCC
Confidence            999999999999999997

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=98.44  E-value=2.7e-07  Score=78.37  Aligned_cols=41  Identities=10%  Similarity=0.149  Sum_probs=34.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +++|+|.||++||++|+.+.|.|.+++.++..    +.++.|+.+
T Consensus       102 ~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad  142 (192)
T cd02988         102 DTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIIST  142 (192)
T ss_pred             CCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhH
Confidence            46999999999999999999999999998843    455555544

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=98.43  E-value=1.5e-06  Score=76.46  Aligned_cols=106  Identities=17%  Similarity=0.246  Sum_probs=77.9

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +..+.++.-|++||...|++|.++.|.|..+.++|+      +.|+.|++|...           ...+|... .+..++
T Consensus       145 i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg------i~v~~VS~DG~~-----------~p~fp~~~-~d~gqa  206 (256)
T TIGR02739       145 IQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG------ISVIPISVDGTL-----------IPGLPNSR-SDSGQA  206 (256)
T ss_pred             HHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCcc-CChHHH
Confidence            445667899999999999999999999999999986      789999999752           01222221 146778


Q ss_pred             HHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018266          245 RIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA  301 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  301 (358)
                      +++|+..+|+++|++++.+....-      .+|.+.       .++|.+.+...+..
T Consensus       207 ~~l~v~~~Pal~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~~~  250 (256)
T TIGR02739       207 QHLGVKYFPALYLVNPKSQKMSPL------AYGFIS-------QDELKERILNVLTQ  250 (256)
T ss_pred             HhcCCccCceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence            999999999999999986654443      256555       45555555544443

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=3.1e-06  Score=68.25  Aligned_cols=118  Identities=19%  Similarity=0.329  Sum_probs=94.5

Q ss_pred             hhhccCCceecCCCceeeecccCCcEEEEEEe--ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHH
Q 018266          147 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~  222 (358)
                      +|..+|+|..+.+-.++.+.++.|..+.|.|.  +...|.|..++..+.++.-+|..   .+++.+++++|.  ++..|.
T Consensus         8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~K---RnvKlialS~d~vesH~~Wi   84 (224)
T KOG0854|consen    8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDK---RNVKLIALSVDDVESHKDWI   84 (224)
T ss_pred             ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhh---cCceEEEeehhhHHHHHHHH
Confidence            68899999997776779999999987777776  56788899999999999999987   899999999986  445666


Q ss_pred             HhhhcC----C-ccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018266          223 LNHSIM----P-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       223 ~~~~~~----~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~  267 (358)
                      +-++++    + -..+|...|.+++++-.|+.-            ....+++||++.+++..
T Consensus        85 ~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs  146 (224)
T KOG0854|consen   85 KDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLS  146 (224)
T ss_pred             HHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEE
Confidence            555322    1 256777888899999888762            35679999999999866

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=98.42  E-value=3.1e-07  Score=65.80  Aligned_cols=36  Identities=11%  Similarity=0.166  Sum_probs=29.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      -|.||++||++|+.+.|.+.++++++...   +++  +++|
T Consensus         2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~---~~~--~~v~   37 (76)
T TIGR00412         2 KIQIYGTGCANCQMTEKNVKKAVEELGID---AEF--EKVT   37 (76)
T ss_pred             EEEEECCCCcCHHHHHHHHHHHHHHcCCC---eEE--EEeC
Confidence            37899999999999999999999987543   444  5555

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=98.41  E-value=5.1e-07  Score=71.48  Aligned_cols=75  Identities=19%  Similarity=0.368  Sum_probs=47.3

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +..+..+..++.|..+|||.|....|.|.++++..     .++++-.+..|.+.                       ++.
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~-----p~i~~~~i~rd~~~-----------------------el~   87 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEAN-----PNIEVRIILRDENK-----------------------ELM   87 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH------TTEEEEEE-HHHHH-----------------------HHT
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhC-----CCCeEEEEEecCCh-----------------------hHH
Confidence            33445667888999999999999999999998875     34667667666432                       333


Q ss_pred             HH---cCCCceeeEEEECCCCcEEec
Q 018266          245 RI---FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       245 ~~---~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+   .|...+|+++++|.+|+.+.+
T Consensus        88 ~~~lt~g~~~IP~~I~~d~~~~~lg~  113 (129)
T PF14595_consen   88 DQYLTNGGRSIPTFIFLDKDGKELGR  113 (129)
T ss_dssp             TTTTT-SS--SSEEEEE-TT--EEEE
T ss_pred             HHHHhCCCeecCEEEEEcCCCCEeEE
Confidence            33   477899999999999999988

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.40  E-value=3.9e-07  Score=63.51  Aligned_cols=54  Identities=15%  Similarity=0.211  Sum_probs=41.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      ++.|+++||++|+.+.|.+.++++..    .++++..++++.++                    +++++||+.+.|+.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~----~~i~~~~id~~~~~--------------------~l~~~~~i~~vPti   56 (67)
T cd02973           3 IEVFVSPTCPYCPDAVQAANRIAALN----PNISAEMIDAAEFP--------------------DLADEYGVMSVPAI   56 (67)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHhC----CceEEEEEEcccCH--------------------hHHHHcCCcccCEE
Confidence            67899999999999999999886642    23777778777554                    45778888888863

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4.6e-06  Score=65.86  Aligned_cols=116  Identities=15%  Similarity=0.155  Sum_probs=90.8

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcE-EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|++ +.+.+.+++.++.||. ++..|-+-..|.|......+++.+.++     .+..|+.||+| -+-+..+|
T Consensus        20 vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~-----~~~~Vl~IS~D-LPFAq~Rf   93 (158)
T COG2077          20 VGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKL-----GNTVVLCISMD-LPFAQKRF   93 (158)
T ss_pred             cCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhcc-----CCcEEEEEeCC-ChhHHhhh
Confidence            5899999999 8888899999999975 555666778888999999999988887     44788999998 44566677


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCC--ce-------eeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIK--GI-------PALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~--~~-------P~~~lid~~G~v~~~~  268 (358)
                      ....+..++...++ ....+.+.||+.  ..       .+++++|.+|+|++..
T Consensus        94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~e  147 (158)
T COG2077          94 CGAEGIENVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSE  147 (158)
T ss_pred             hhhcCcccceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEE
Confidence            77666655554444 456788999973  33       4789999999999884

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=98.38  E-value=2.1e-06  Score=75.19  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=76.4

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +..+.+++-|++||.+.|++|.++.|.|+.+.++|+      +.|+.||+|...           ...+|... .+...+
T Consensus       138 i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg------~~v~~VS~DG~~-----------~p~fp~~~-~d~gqa  199 (248)
T PRK13703        138 IAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG------LSVIPVSVDGVI-----------NPLLPDSR-TDQGQA  199 (248)
T ss_pred             HHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC------CeEEEEecCCCC-----------CCCCCCCc-cChhHH
Confidence            455667899999999999999999999999999986      689999999742           11233221 134566


Q ss_pred             HHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018266          245 RIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA  301 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  301 (358)
                      ++++|..+|+++|++++.+-...-      .+|...       ..+|.+.+...+..
T Consensus       200 ~~l~v~~~PAl~Lv~~~t~~~~pv------~~G~iS-------~deL~~Ri~~v~t~  243 (248)
T PRK13703        200 QRLGVKYFPALMLVDPKSGSVRPL------SYGFIT-------QDDLAKRFLNVSTD  243 (248)
T ss_pred             HhcCCcccceEEEEECCCCcEEEE------eeccCC-------HHHHHHHHHHHHhc
Confidence            899999999999999986544332      256555       45565555544443

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.36  E-value=6.4e-07  Score=65.21  Aligned_cols=65  Identities=32%  Similarity=0.744  Sum_probs=43.1

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      -.+|+++|+|++.||++|+.+...+   .++.+.+.    .++..+.|..+...                      ... 
T Consensus        15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~----~~fv~v~vd~~~~~----------------------~~~-   67 (82)
T PF13899_consen   15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALN----KNFVLVKVDVDDED----------------------PNA-   67 (82)
T ss_dssp             HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHH----HCSEEEEEETTTHH----------------------HHH-
T ss_pred             HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHH----CCEEEEEEEcCCCC----------------------hhH-
Confidence            3589999999999999999998766   33333344    45556666654332                      111 


Q ss_pred             HHcCCCceeeEEEECC
Q 018266          245 RIFNIKGIPALVLIGP  260 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~  260 (358)
                       .+...++|+++++||
T Consensus        68 -~~~~~~~P~~~~ldp   82 (82)
T PF13899_consen   68 -QFDRQGYPTFFFLDP   82 (82)
T ss_dssp             -HHHHCSSSEEEEEET
T ss_pred             -HhCCccCCEEEEeCC
Confidence             111166999999975

...

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=98.32  E-value=6.1e-07  Score=88.99  Aligned_cols=69  Identities=20%  Similarity=0.382  Sum_probs=49.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      +..+..+||+|+|+|||+||++|+.+.|..   .++.+.+++    +.++.++++.+.+.                ..++
T Consensus       467 l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~----~~~v~vDvt~~~~~----------------~~~l  526 (571)
T PRK00293        467 LAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD----TVLLQADVTANNAE----------------DVAL  526 (571)
T ss_pred             HHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC----CEEEEEECCCCChh----------------hHHH
Confidence            333445799999999999999999999875   567676642    66777777643211                1356


Q ss_pred             eeccccCCCCcc
Q 018266          112 IEDYGADAYPFT  123 (358)
Q Consensus       112 ~~~~gi~~~P~~  123 (358)
                      +++|++.++|+.
T Consensus       527 ~~~~~v~g~Pt~  538 (571)
T PRK00293        527 LKHYNVLGLPTI  538 (571)
T ss_pred             HHHcCCCCCCEE
Confidence            788899998864

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.31  E-value=1.8e-05  Score=78.83  Aligned_cols=177  Identities=12%  Similarity=0.068  Sum_probs=104.7

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccc--ccccee-eec
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIE--EDLIGL-IED  114 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~--~~~~~l-~~~  114 (358)
                      +++++++.++.|+.+.|..|..+...++++++ +.++   +++...+.+.+.....++.....+.+..  .++... ++-
T Consensus       362 ~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~~---i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f  437 (555)
T TIGR03143       362 GRLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LSEK---LNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKF  437 (555)
T ss_pred             HhcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cCCc---EEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEE
Confidence            45678889999999999999998888888774 4444   7777777665555444444433332211  111111 122


Q ss_pred             cccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCce-eeecccCCcEEEEEEeccCCcccHhhHHHHH
Q 018266          115 YGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       115 ~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~  193 (358)
                      +   +.|...++..-+.++.........+               +.+. -.+..+.++..+-.|.+++|++|......++
T Consensus       438 ~---g~P~G~Ef~s~i~~i~~~~~~~~~l---------------~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~  499 (555)
T TIGR03143       438 H---GVPSGHELNSFILALYNAAGPGQPL---------------GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQ  499 (555)
T ss_pred             E---ecCccHhHHHHHHHHHHhcCCCCCC---------------CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHH
Confidence            2   3355554443333322211111111               1110 1223444555566788999999998888888


Q ss_pred             HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++..+..     ++..-.|....                       ..+++++|+|.++|++++   ||+++..
T Consensus       500 ~~~~~~~-----~i~~~~i~~~~-----------------------~~~~~~~~~v~~vP~~~i---~~~~~~~  542 (555)
T TIGR03143       500 RIASLNP-----NVEAEMIDVSH-----------------------FPDLKDEYGIMSVPAIVV---DDQQVYF  542 (555)
T ss_pred             HHHHhCC-----CceEEEEECcc-----------------------cHHHHHhCCceecCEEEE---CCEEEEe
Confidence            7777653     45554454443                       368899999999999987   5666654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines

Probab=98.24  E-value=5.7e-07  Score=51.62  Aligned_cols=29  Identities=28%  Similarity=0.890  Sum_probs=27.2

Q ss_pred             eeecCcCCCCcce-EEEcCCCCCCCCcccc
Q 018266          323 YVCDCCKMRGRFW-AFSCDVCNYDLHPKCV  351 (358)
Q Consensus       323 ~~C~~C~e~g~~~-~~~~~~~~~~~~~~~~  351 (358)
                      +.|+.|.+...+. .|+|++|+|.||++||
T Consensus         1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca   30 (30)
T PF03107_consen    1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA   30 (30)
T ss_pred             CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence            5799999999999 9999999999999997

The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=98.21  E-value=9.8e-06  Score=61.69  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR  216 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~  216 (358)
                      +|.+ +.+|+.++++.++||++||.-.|+.|+.-. ....|++|+++|++   .+++|+++.++.
T Consensus         3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~---~gl~ILaFPcnq   63 (108)
T PF00255_consen    3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKD---KGLEILAFPCNQ   63 (108)
T ss_dssp             GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGG---GTEEEEEEEBST
T ss_pred             ceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhc---CCeEEEeeehHH
Confidence            3566 899999999999999999999999999988 77899999999987   889999999864

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=98.18  E-value=3.2e-06  Score=72.75  Aligned_cols=65  Identities=31%  Similarity=0.612  Sum_probs=59.7

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHh-cCCCceEEEEEEecCChh
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLR-TRGTELEVIFISFDHDEN   90 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~-~~~~~~~iv~i~~d~~~~   90 (358)
                      +| |++.+|+ +++..++||+++|+|.-+.||. |......+.++.+++. ..+.++++++|++|.+.+
T Consensus        49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerD  117 (207)
T COG1999          49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERD  117 (207)
T ss_pred             ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCC
Confidence            56 9999999 9999999999999999999997 9999999999999998 777789999999997544

>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=98.16  E-value=2e-06  Score=81.73  Aligned_cols=69  Identities=28%  Similarity=0.556  Sum_probs=59.1

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      +..+|.||++|||+|+.+.|.++++++.... +..-+.|.+|++-.+.                     +..+++.|+|+
T Consensus        58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~-W~~vv~vaaVdCA~~~---------------------N~~lCRef~V~  115 (606)
T KOG1731|consen   58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEK-WRPVVRVAAVDCADEE---------------------NVKLCREFSVS  115 (606)
T ss_pred             hhHHHHHHHhhhhhhhhcchHHHHHHHHHhc-ccceeEEEEeeccchh---------------------hhhhHhhcCCC
Confidence            5788999999999999999999999999875 6566677777765443                     68999999999


Q ss_pred             ceeeEEEECCC
Q 018266          251 GIPALVLIGPD  261 (358)
Q Consensus       251 ~~P~~~lid~~  261 (358)
                      ++|++..+.++
T Consensus       116 ~~Ptlryf~~~  126 (606)
T KOG1731|consen  116 GYPTLRYFPPD  126 (606)
T ss_pred             CCceeeecCCc
Confidence            99999999766

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=98.14  E-value=1.3e-05  Score=54.18  Aligned_cols=63  Identities=29%  Similarity=0.590  Sum_probs=48.8

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.||+.||++|....+.+.++  ++..   .++.++.++++.....                    ......+++..+|
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~P   55 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL--ALLN---KGVKFEAVDVDEDPAL--------------------EKELKRYGVGGVP   55 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH--HhhC---CCcEEEEEEcCCChHH--------------------hhHHHhCCCcccc
Confidence            4789999999999999999988  3332   7889999998875411                    1113578999999


Q ss_pred             eEEEECCC
Q 018266          254 ALVLIGPD  261 (358)
Q Consensus       254 ~~~lid~~  261 (358)
                      ++++++++
T Consensus        56 ~~~~~~~~   63 (69)
T cd01659          56 TLVVFGPG   63 (69)
T ss_pred             EEEEEeCC
Confidence            99999766

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=98.14  E-value=8.6e-06  Score=62.55  Aligned_cols=68  Identities=41%  Similarity=0.703  Sum_probs=53.0

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      .....++++++.||++||++|+.+.|.+.++.+++.    ..+.++.+.....                      ...+.
T Consensus        27 ~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~i~~~~~----------------------~~~~~   80 (127)
T COG0526          27 LSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYG----GDVEVVAVNVDDE----------------------NPDLA   80 (127)
T ss_pred             hhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhc----CCcEEEEEECCCC----------------------ChHHH
Confidence            333448899999999999999999999999999986    3567777777511                      25666


Q ss_pred             HHcC--CCceeeEEEE
Q 018266          245 RIFN--IKGIPALVLI  258 (358)
Q Consensus       245 ~~~~--v~~~P~~~li  258 (358)
                      ..|+  +..+|+++++
T Consensus        81 ~~~~~~~~~~p~~~~~   96 (127)
T COG0526          81 AEFGVAVRSIPTLLLF   96 (127)
T ss_pred             HHHhhhhccCCeEEEE
Confidence            7777  8888988766

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.13  E-value=3e-06  Score=62.58  Aligned_cols=63  Identities=14%  Similarity=0.121  Sum_probs=50.5

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG  116 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  116 (358)
                      +.++++++-+..|+++||++|+...+.+.++++++.    ++++..++.+...                    +++.+||
T Consensus         7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~--------------------e~a~~~~   62 (89)
T cd03026           7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQ--------------------DEVEERG   62 (89)
T ss_pred             HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCH--------------------HHHHHcC
Confidence            346778889999999999999999999988887643    2778888877554                    4678889


Q ss_pred             cCCCCcc
Q 018266          117 ADAYPFT  123 (358)
Q Consensus       117 i~~~P~~  123 (358)
                      |.+.|+.
T Consensus        63 V~~vPt~   69 (89)
T cd03026          63 IMSVPAI   69 (89)
T ss_pred             CccCCEE
Confidence            9888865

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=98.09  E-value=5e-06  Score=60.47  Aligned_cols=49  Identities=22%  Similarity=0.586  Sum_probs=35.8

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecC
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ..+..+||+++|+|+++||++|+.+...+   .++.+.+.++   +..+.++.+.
T Consensus        11 ~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~---fv~v~vd~~~   62 (82)
T PF13899_consen   11 AEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKN---FVLVKVDVDD   62 (82)
T ss_dssp             HHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHC---SEEEEEETTT
T ss_pred             HHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCC---EEEEEEEcCC
Confidence            34445799999999999999999999887   4455545554   5555555543

...

>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=1.1e-05  Score=64.60  Aligned_cols=99  Identities=25%  Similarity=0.349  Sum_probs=75.3

Q ss_pred             cCccc-ccCCCCc-eecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      .-+|+ |.+.+|. ++|.++.|+ +|+++|| +..-|-|.+..--|..-|++++..+  .+++.++.|.. .+-++|...
T Consensus        68 ~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~--aeV~GlS~D~s-~sqKaF~sK  144 (211)
T KOG0855|consen   68 AIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAG--AEVIGLSGDDS-ASQKAFASK  144 (211)
T ss_pred             cCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcC--ceEEeeccCch-HHHHHhhhh
Confidence            33466 9999999 999999765 8888999 5566779999999999999999988  88999999854 333444444


Q ss_pred             C-CC-cccccccceeeeccccCCCCcch
Q 018266           99 S-DG-TLIEEDLIGLIEDYGADAYPFTR  124 (358)
Q Consensus        99 ~-~~-~~~~~~~~~l~~~~gi~~~P~~~  124 (358)
                      . .+ .++.+...+++...|+..-|+.+
T Consensus       145 qnlPYhLLSDpk~e~ik~lGa~k~p~gg  172 (211)
T KOG0855|consen  145 QNLPYHLLSDPKNEVIKDLGAPKDPFGG  172 (211)
T ss_pred             ccCCeeeecCcchhHHHHhCCCCCCCCC
Confidence            2 23 55677777888888887777543

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=98.04  E-value=1.9e-05  Score=67.90  Aligned_cols=117  Identities=16%  Similarity=0.288  Sum_probs=80.5

Q ss_pred             HhhhhccCCcee-cCCCce-eeecccC--CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC---
Q 018266          145 QLLAIEGRDYVL-SRDHRK-ITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD---  217 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~-~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~---  217 (358)
                      ..+|..+||..+ +.+|+. .++.++.  ++|++|+|.+-.||+=+.-+..++++.++|.    +-.+++.|.+.+-   
T Consensus        73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~----d~adFl~VYI~EAHps  148 (237)
T PF00837_consen   73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFS----DVADFLIVYIEEAHPS  148 (237)
T ss_pred             eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhh----hhhheehhhHhhhCcC
Confidence            346889999998 889988 8888885  5999999999999999999999999999998    3344555544210   


Q ss_pred             --------------H----H--HHHHhhhcCCccccccCch-hHHHHHHHcCCCcee-eEEEECCCCcEEecCc
Q 018266          218 --------------H----K--EFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIP-ALVLIGPDGKTISTNG  269 (358)
Q Consensus       218 --------------~----~--~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P-~~~lid~~G~v~~~~g  269 (358)
                                    +    +  ...+.+.... ...|+..| -++...+.||.  +| .+++| .+|+|++.+|
T Consensus       149 DgW~~~~~~~~i~qh~sledR~~aA~~l~~~~-~~~pi~vD~mdN~~~~~YgA--~PeRlyIi-~~gkv~Y~Gg  218 (237)
T PF00837_consen  149 DGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEF-PQCPIVVDTMDNNFNKAYGA--LPERLYII-QDGKVVYKGG  218 (237)
T ss_pred             CCccCCCCceeecCCCCHHHHHHHHHHHHhhC-CCCCEEEEccCCHHHHHhCC--CcceEEEE-ECCEEEEeCC
Confidence                          0    1  1111122111 34454333 45566777765  45 35666 7999999976

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=97.97  E-value=3.1e-05  Score=63.21  Aligned_cols=87  Identities=24%  Similarity=0.390  Sum_probs=46.0

Q ss_pred             eeeecccCCcEEEEEEeccCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEeCCCCH-HHHHHhhhcCCccccccCc
Q 018266          162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDH-KEFDLNHSIMPWLAIPYED  237 (358)
Q Consensus       162 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~-~~~~~~~~~~~~~~~~~~~  237 (358)
                      .+..+.-.+|+++|.++.+||+.|+.+... +  .++++-+.+      .+|.|.+|.+. .++...+.           
T Consensus        29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------~FI~VkvDree~Pdid~~y~-----------   91 (163)
T PF03190_consen   29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------NFIPVKVDREERPDIDKIYM-----------   91 (163)
T ss_dssp             HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------H-EEEEEETTT-HHHHHHHH-----------
T ss_pred             HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------CEEEEEeccccCccHHHHHH-----------
Confidence            344445568999999999999999988742 2  233333432      36777777654 11111111           


Q ss_pred             hhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          238 RARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       238 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                         .......|..|+|+.++++|+|+.++..
T Consensus        92 ---~~~~~~~~~gGwPl~vfltPdg~p~~~~  119 (163)
T PF03190_consen   92 ---NAVQAMSGSGGWPLTVFLTPDGKPFFGG  119 (163)
T ss_dssp             ---HHHHHHHS---SSEEEEE-TTS-EEEEE
T ss_pred             ---HHHHHhcCCCCCCceEEECCCCCeeeee
Confidence               0111122788999999999999998763

; PDB: 3IRA_A.

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=97.95  E-value=1.2e-05  Score=63.32  Aligned_cols=47  Identities=6%  Similarity=0.169  Sum_probs=34.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHH---HHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV---QLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~---~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +..+..+||+|+|+|++.||++|+.+...+.   ++.+.++++     +|.|+++
T Consensus        16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~-----Fv~V~l~   65 (130)
T cd02960          16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQED-----FIMLNLV   65 (130)
T ss_pred             HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhC-----eEEEEEE
Confidence            5556678999999999999999999998763   345545443     4555554

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=0.00012  Score=58.10  Aligned_cols=88  Identities=23%  Similarity=0.399  Sum_probs=60.1

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc--CchhHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY--EDRARQ  241 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~  241 (358)
                      ...+|+.++.|-++.|++|.++...+.   ++.+-+.    ..+.++.+.+..+...  .       +....  ..-...
T Consensus        39 ~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk----~hf~~~~l~i~~skpv--~-------f~~g~kee~~s~~  105 (182)
T COG2143          39 SPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLK----EHFSAYYLNISYSKPV--L-------FKVGDKEEKMSTE  105 (182)
T ss_pred             CccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHh----hCeEEEEEEeccCcce--E-------eecCceeeeecHH
Confidence            346799999999999999998876653   3333343    5667777766433200  0       00000  011256


Q ss_pred             HHHHHcCCCceeeEEEECCCCcEEec
Q 018266          242 DLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       242 ~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++++.|+|+++|+++++|.+|+.+..
T Consensus       106 ELa~kf~vrstPtfvFfdk~Gk~Il~  131 (182)
T COG2143         106 ELAQKFAVRSTPTFVFFDKTGKTILE  131 (182)
T ss_pred             HHHHHhccccCceEEEEcCCCCEEEe
Confidence            99999999999999999999998765

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.94  E-value=3e-05  Score=59.45  Aligned_cols=52  Identities=31%  Similarity=0.620  Sum_probs=41.7

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-CChh
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-HDEN   90 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-~~~~   90 (358)
                      ......++++++.||++||++|+.++|.+.++++++...   +.++.++.. ..+.
T Consensus        26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~i~~~~~~~~   78 (127)
T COG0526          26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGD---VEVVAVNVDDENPD   78 (127)
T ss_pred             ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcCC---cEEEEEECCCCChH
Confidence            444445899999999999999999999999999998762   667778775 3443

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=97.89  E-value=1e-05  Score=62.78  Aligned_cols=68  Identities=16%  Similarity=0.250  Sum_probs=47.5

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      +..+..++|+++|+|+++||++|+.|....   .++.+.++++     +|.+.+|.+...                +..+
T Consensus        10 ~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~-----~v~~~~d~~~~e----------------~~~~   68 (114)
T cd02958          10 KQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIREN-----FIFWQCDIDSSE----------------GQRF   68 (114)
T ss_pred             HHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhC-----EEEEEecCCCcc----------------HHHH
Confidence            556667899999999999999999998743   4466666654     555555543211                2356


Q ss_pred             eeccccCCCCcc
Q 018266          112 IEDYGADAYPFT  123 (358)
Q Consensus       112 ~~~~gi~~~P~~  123 (358)
                      ++.|++.++|+.
T Consensus        69 ~~~~~~~~~P~~   80 (114)
T cd02958          69 LQSYKVDKYPHI   80 (114)
T ss_pred             HHHhCccCCCeE
Confidence            777888888853

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=97.89  E-value=0.00032  Score=69.34  Aligned_cols=166  Identities=14%  Similarity=0.062  Sum_probs=92.9

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc-cccccce-eeecc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL-IEEDLIG-LIEDY  115 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~-l~~~~  115 (358)
                      +++++.+.++.|.. .|..|..+...++++++. .++   +++.....+.           ..+.+ +..++.. =++-+
T Consensus        15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~~---i~~~~~~~~~-----------~~p~~~~~~~~~~~~i~f~   78 (517)
T PRK15317         15 ELLERPIELVASLD-DSEKSAELKELLEEIASL-SDK---ITVEEDSLDV-----------RKPSFSITRPGEDTGVRFA   78 (517)
T ss_pred             HhCCCCEEEEEEeC-CCchHHHHHHHHHHHHHh-CCc---eEEEEccCCC-----------CCCEEEEEcCCccceEEEE
Confidence            35667777777766 799999888877777663 333   5543322110           11211 1112111 12222


Q ss_pred             ccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHH
Q 018266          116 GADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEV  195 (358)
Q Consensus       116 gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l  195 (358)
                         +.|...++..-+.++.......+.+..-.              .-.+..+.+..-+..|.++.||+|+.....++++
T Consensus        79 ---g~P~g~Ef~s~i~~i~~~~~~~~~l~~~~--------------~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~  141 (517)
T PRK15317         79 ---GIPMGHEFTSLVLALLQVGGHPPKLDQEV--------------IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLM  141 (517)
T ss_pred             ---ecCccHHHHHHHHHHHHhcCCCCCCCHHH--------------HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHH
Confidence               45766655554444333221111111100              0123344455668889999999999988888887


Q ss_pred             HHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          196 YNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       196 ~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +...     .++..-.|  |...                     ..+++++|++.++|++++   +|+..+.
T Consensus       142 a~~~-----~~i~~~~i--d~~~---------------------~~~~~~~~~v~~VP~~~i---~~~~~~~  182 (517)
T PRK15317        142 AVLN-----PNITHTMI--DGAL---------------------FQDEVEARNIMAVPTVFL---NGEEFGQ  182 (517)
T ss_pred             HHhC-----CCceEEEE--Echh---------------------CHhHHHhcCCcccCEEEE---CCcEEEe
Confidence            6654     33443334  5433                     478999999999999976   4454433

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=97.87  E-value=0.00012  Score=57.73  Aligned_cols=88  Identities=14%  Similarity=0.221  Sum_probs=63.2

Q ss_pred             EEEEEEec--cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          172 TIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       172 ~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      ..+|+|.+  ..++-+....-.|.++.++|.+   .++.++-|.+|.+                       ..++.+|||
T Consensus        36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~---~~v~~akVDiD~~-----------------------~~LA~~fgV   89 (132)
T PRK11509         36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQS-----------------------EAIGDRFGV   89 (132)
T ss_pred             cEEEEeCCCCCcCCccccHHHHHHHHHHHhcC---CceEEEEEECCCC-----------------------HHHHHHcCC
Confidence            44555543  2345566677788999999963   4588888888865                       689999999


Q ss_pred             CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      .++||+++| ++|+.+.+       +.|...       .+++.+.+++.+.
T Consensus        90 ~siPTLl~F-kdGk~v~~-------i~G~~~-------k~~l~~~I~~~L~  125 (132)
T PRK11509         90 FRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVE  125 (132)
T ss_pred             ccCCEEEEE-ECCEEEEE-------EeCcCC-------HHHHHHHHHHHhc
Confidence            999999999 88888877       456544       3455555665544

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.85  E-value=2.4e-05  Score=75.37  Aligned_cols=75  Identities=25%  Similarity=0.460  Sum_probs=52.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHH-HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLI-EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~-~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ++|+|+|+|||.||-.|+...+..- +.....+-   .+  ++.+..|-+.                 .+..+.++.++|
T Consensus       473 ~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~---~~--~vlLqaDvT~-----------------~~p~~~~lLk~~  530 (569)
T COG4232         473 KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL---QD--VVLLQADVTA-----------------NDPAITALLKRL  530 (569)
T ss_pred             CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc---CC--eEEEEeeecC-----------------CCHHHHHHHHHc
Confidence            4569999999999999999887553 22222221   33  4555544321                 123367889999


Q ss_pred             CCCceeeEEEECCCCcEE
Q 018266          248 NIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~  265 (358)
                      ++-+.|++++++++|+-.
T Consensus       531 ~~~G~P~~~ff~~~g~e~  548 (569)
T COG4232         531 GVFGVPTYLFFGPQGSEP  548 (569)
T ss_pred             CCCCCCEEEEECCCCCcC
Confidence            999999999999888743

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=4.3e-05  Score=63.49  Aligned_cols=69  Identities=29%  Similarity=0.468  Sum_probs=57.1

Q ss_pred             ecccccCccc-ccCC-CC----ceecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           18 TVLASEGVEF-LLSR-QG----KVPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        18 ~~l~~~~~~~-l~~~-~g----~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +++..+.++| +... .|    +++++++.||.++++|| +..-+.|......|.+.+++|++.|  .+++.+|+|+.
T Consensus         3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~   78 (194)
T COG0450           3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSV   78 (194)
T ss_pred             cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcH
Confidence            4445556677 4444 45    39999988999999999 8888889999999999999999998  99999999963

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=97.83  E-value=9.8e-05  Score=52.60  Aligned_cols=63  Identities=16%  Similarity=0.325  Sum_probs=39.7

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH-HcCCCce
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR-IFNIKGI  252 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~v~~~  252 (358)
                      +..||++||++|+...+.|.++          ++.+-.++++.+...                   ...+.+ .+++.++
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~----------~~~~~~idi~~~~~~-------------------~~~~~~~~~~~~~v   52 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL----------GAAYEWVDIEEDEGA-------------------ADRVVSVNNGNMTV   52 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------CCceEEEeCcCCHhH-------------------HHHHHHHhCCCcee
Confidence            5679999999999988877553          233445666654310                   112222 2588999


Q ss_pred             eeEEEECCCCcEEec
Q 018266          253 PALVLIGPDGKTIST  267 (358)
Q Consensus       253 P~~~lid~~G~v~~~  267 (358)
                      |++ ++ .+|+++..
T Consensus        53 P~i-~~-~~g~~l~~   65 (77)
T TIGR02200        53 PTV-KF-ADGSFLTN   65 (77)
T ss_pred             CEE-EE-CCCeEecC
Confidence            997 45 46666644

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=3.8e-05  Score=64.34  Aligned_cols=93  Identities=24%  Similarity=0.451  Sum_probs=70.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +.+.++|.|++.|.+.|+...|.+.++..+|..   ..+.+-.|.+..                       -...+.+|+
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~---~~lkFGkvDiGr-----------------------fpd~a~kfr  196 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN---NLLKFGKVDIGR-----------------------FPDVAAKFR  196 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCC---CCCcccceeecc-----------------------CcChHHhee
Confidence            347899999999999999999999999999986   666666665543                       235667777


Q ss_pred             C------CceeeEEEECCCCcEEecCcchhhhhc-CCCCCCCchhhHHH
Q 018266          249 I------KGIPALVLIGPDGKTISTNGKEMISLY-GAKAFPFTESRIAE  290 (358)
Q Consensus       249 v------~~~P~~~lid~~G~v~~~~g~~~~~~~-g~~~~p~~~~~~~~  290 (358)
                      |      +..||++++ .+|+-+.|  +..+... .+..|+++++.+-+
T Consensus       197 is~s~~srQLPT~ilF-q~gkE~~R--rP~vd~~gra~s~~fSeenv~~  242 (265)
T KOG0914|consen  197 ISLSPGSRQLPTYILF-QKGKEVSR--RPDVDVKGRAVSFPFSEENVCQ  242 (265)
T ss_pred             eccCcccccCCeEEEE-ccchhhhc--CccccccCCcccccccHHHHHH
Confidence            6      468999999 78877655  3334444 36788998887554

>smart00594 UAS UAS domain

Probab=97.79  E-value=2.1e-05  Score=61.91  Aligned_cols=69  Identities=16%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      +..+.-++|+++|+|+++||++|+.+....   .++.+.++++     +|++.+|.+..                ++..+
T Consensus        20 ~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~-----fv~~~~dv~~~----------------eg~~l   78 (122)
T smart00594       20 KQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIREN-----FIFWQVDVDTS----------------EGQRV   78 (122)
T ss_pred             HHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcC-----EEEEEecCCCh----------------hHHHH
Confidence            566667899999999999999999988864   3455556543     55555553321                12468


Q ss_pred             eeccccCCCCcch
Q 018266          112 IEDYGADAYPFTR  124 (358)
Q Consensus       112 ~~~~gi~~~P~~~  124 (358)
                      +..|++.+||+..
T Consensus        79 ~~~~~~~~~P~~~   91 (122)
T smart00594       79 SQFYKLDSFPYVA   91 (122)
T ss_pred             HHhcCcCCCCEEE
Confidence            8999999999743

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=97.77  E-value=0.00022  Score=55.36  Aligned_cols=74  Identities=12%  Similarity=0.108  Sum_probs=49.3

Q ss_pred             cCCcEEEEEEecc----CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          168 LAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       168 ~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      -.+|.++|+++++    ||..|+..+.. .++.+-+.    .++-+.+.++....                     ...+
T Consensus        15 ~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln----~~fv~w~~dv~~~e---------------------g~~l   68 (116)
T cd02991          15 QELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYIN----TRMLFWACSVAKPE---------------------GYRV   68 (116)
T ss_pred             hhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHH----cCEEEEEEecCChH---------------------HHHH
Confidence            3579999999999    88888776531 22222232    34444444444332                     4689


Q ss_pred             HHHcCCCceeeEEEE---CCCCcEEec
Q 018266          244 CRIFNIKGIPALVLI---GPDGKTIST  267 (358)
Q Consensus       244 ~~~~~v~~~P~~~li---d~~G~v~~~  267 (358)
                      +..+++.++|++.++   +.+.+++.+
T Consensus        69 a~~l~~~~~P~~~~l~~~~~~~~vv~~   95 (116)
T cd02991          69 SQALRERTYPFLAMIMLKDNRMTIVGR   95 (116)
T ss_pred             HHHhCCCCCCEEEEEEecCCceEEEEE
Confidence            999999999999999   445555655

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd02340 ZZ_NBR1_like Zinc finger, ZZ type

Probab=97.72  E-value=1.6e-05  Score=49.74  Aligned_cols=30  Identities=33%  Similarity=0.678  Sum_probs=27.2

Q ss_pred             eecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018266          324 VCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       324 ~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .|++|++.+.|.+|+|.+|. |||+..|...
T Consensus         2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~   32 (43)
T cd02340           2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK   32 (43)
T ss_pred             CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence            59999999999999999995 9999999554

Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=97.71  E-value=0.0012  Score=65.35  Aligned_cols=164  Identities=18%  Similarity=0.156  Sum_probs=92.8

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc-cccccceeeeccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL-IEEDLIGLIEDYG  116 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~g  116 (358)
                      +++++.+.++.|.. .|..|..+...++++++. .++   +++...+.+.+.          .+.+ +..++.    .+|
T Consensus        15 ~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~-s~k---i~~~~~~~~~~~----------~p~~~~~~~~~----~~~   75 (515)
T TIGR03140        15 ASLENPVTLVLSAG-SHEKSKELLELLDEIASL-SDK---ISLTQNTADTLR----------KPSFTILRDGA----DTG   75 (515)
T ss_pred             HhcCCCEEEEEEeC-CCchhHHHHHHHHHHHHh-CCC---eEEEEecCCcCC----------CCeEEEecCCc----ccc
Confidence            34677777777776 688898887777776663 333   555444332211          1211 111111    123


Q ss_pred             cC--CCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCce-eeecccCCcEEEEEEeccCCcccHhhHHHHH
Q 018266          117 AD--AYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRK-ITVSELAGKTIGLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       117 i~--~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~-~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~  193 (358)
                      |+  +.|...++..-+.++.......+.+               +.+. -.+..+.++.-+..|..+.||+|+.....++
T Consensus        76 i~f~g~P~g~Ef~s~i~~i~~~~~~~~~l---------------~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~  140 (515)
T TIGR03140        76 IRFAGIPGGHEFTSLVLAILQVGGHGPKL---------------DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALN  140 (515)
T ss_pred             eEEEecCCcHHHHHHHHHHHHhcCCCCCC---------------CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHH
Confidence            32  4576665554444433222111111               1111 1233445566688899999999998888787


Q ss_pred             HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                      ++..+..     ++..  -.+|...                     ..+++++|++.++|++++   +|+.+.
T Consensus       141 ~~a~~~p-----~i~~--~~id~~~---------------------~~~~~~~~~v~~VP~~~i---~~~~~~  182 (515)
T TIGR03140       141 QMALLNP-----NISH--TMIDGAL---------------------FQDEVEALGIQGVPAVFL---NGEEFH  182 (515)
T ss_pred             HHHHhCC-----CceE--EEEEchh---------------------CHHHHHhcCCcccCEEEE---CCcEEE
Confidence            7766643     3333  3345433                     478889999999999986   444443

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=97.71  E-value=0.00013  Score=56.51  Aligned_cols=77  Identities=21%  Similarity=0.445  Sum_probs=48.0

Q ss_pred             CCcEEEEEEec-------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018266          169 AGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  241 (358)
Q Consensus       169 ~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      .+++++|+|++       +|||.|....|.+++...+..    .+..+|.+.+... ..|+.               ++.
T Consensus        18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~----~~~~lv~v~VG~r-~~Wkd---------------p~n   77 (119)
T PF06110_consen   18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAP----ENARLVYVEVGDR-PEWKD---------------PNN   77 (119)
T ss_dssp             TTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-S----TTEEEEEEE---H-HHHC----------------TTS
T ss_pred             CCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCC----CCceEEEEEcCCH-HHhCC---------------CCC
Confidence            35677888874       599999999999998877754    5667777776532 23321               123


Q ss_pred             HHHH--HcCCCceeeEEEECCCCcEE
Q 018266          242 DLCR--IFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       242 ~l~~--~~~v~~~P~~~lid~~G~v~  265 (358)
                      .+..  .++++++||++-++..++++
T Consensus        78 ~fR~~p~~~l~~IPTLi~~~~~~rL~  103 (119)
T PF06110_consen   78 PFRTDPDLKLKGIPTLIRWETGERLV  103 (119)
T ss_dssp             HHHH--CC---SSSEEEECTSS-EEE
T ss_pred             CceEcceeeeeecceEEEECCCCccc
Confidence            4444  69999999999996665544

; PDB: 1V9W_A 1WOU_A.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.69  E-value=0.00019  Score=50.44  Aligned_cols=55  Identities=20%  Similarity=0.637  Sum_probs=40.4

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|+++||++|+...+.|.+          .++.+..++++.+.+.                   ...+.+.+++.++|
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~----------~~i~~~~vdi~~~~~~-------------------~~~~~~~~~~~~vP   52 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS----------KGIAFEEIDVEKDSAA-------------------REEVLKVLGQRGVP   52 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH----------CCCeEEEEeccCCHHH-------------------HHHHHHHhCCCccc
Confidence            457999999999998877643          3456777777765311                   24567788999999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      ++++
T Consensus        53 ~~~~   56 (74)
T TIGR02196        53 VIVI   56 (74)
T ss_pred             EEEE
Confidence            9986

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.68  E-value=0.00011  Score=53.27  Aligned_cols=60  Identities=22%  Similarity=0.441  Sum_probs=41.8

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++|||+|....+.|.++.  +.    ..+.++-|+.+.+...+                  ...+.+.+++..+|
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~----~~~~~~~v~~~~~~~~~------------------~~~l~~~~g~~~vP   56 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VK----PAYEVVELDQLSNGSEI------------------QDYLEEITGQRTVP   56 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CC----CCCEEEEeeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence            46799999999999999888764  22    23667777665443211                  23466778999999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      ++++
T Consensus        57 ~v~i   60 (84)
T TIGR02180        57 NIFI   60 (84)
T ss_pred             eEEE
Confidence            9853

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1

Probab=97.66  E-value=0.00024  Score=54.12  Aligned_cols=56  Identities=30%  Similarity=0.450  Sum_probs=51.3

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+.+|+ ++|++++||++||-=.|+-|+.-. ....|++++++++++|  ++|++.-|+
T Consensus         6 ~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~g--l~ILaFPcn   62 (108)
T PF00255_consen    6 AKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKG--LEILAFPCN   62 (108)
T ss_dssp             EEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGT--EEEEEEEBS
T ss_pred             eeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCC--eEEEeeehH
Confidence            6789999 999999999999999999999888 7779999999999888  888888775

11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=97.65  E-value=7.2e-05  Score=64.45  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCceecccccCcccccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcC-CCceEEEEEEecC---
Q 018266           14 SDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---   87 (358)
Q Consensus        14 ~~~~~~l~~~~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~-~~~~~iv~i~~d~---   87 (358)
                      ..+-+...+ +.-.|++.+|+ ++-.++.||.+++||--+.||. |......+.++-+++.++ +-+..-++|+||.   
T Consensus       111 ~~~gk~~iG-GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD  189 (280)
T KOG2792|consen  111 RTAGKPAIG-GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERD  189 (280)
T ss_pred             hhcCCCccC-CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccC
Confidence            444444554 44559999999 9999999999999999999998 999888888888887554 4345579999997   


Q ss_pred             ChhHHHHHHhhCCCcc
Q 018266           88 DENGFEEHFKSSDGTL  103 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~  103 (358)
                      +.+.+.+|..+=++++
T Consensus       190 ~~~~~~eY~~eF~pkl  205 (280)
T KOG2792|consen  190 SVEVVAEYVSEFHPKL  205 (280)
T ss_pred             CHHHHHHHHHhcChhh
Confidence            3445555544433333

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=97.58  E-value=0.0012  Score=58.71  Aligned_cols=94  Identities=18%  Similarity=0.214  Sum_probs=57.7

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC---CCC-------------H-HHHHHhhhcCCc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST---DRD-------------H-KEFDLNHSIMPW  230 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~---d~~-------------~-~~~~~~~~~~~~  230 (358)
                      -.+|.+++.|..+.||+|+++...+..+.+.      .+++|..+.+   ..+             + ..|......+..
T Consensus       115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~------g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~  188 (251)
T PRK11657        115 ADAPRIVYVFADPNCPYCKQFWQQARPWVDS------GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGK  188 (251)
T ss_pred             CCCCeEEEEEECCCChhHHHHHHHHHHHhhc------CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence            3568899999999999999999887765432      3355555543   111             1 112211111110


Q ss_pred             ccc-cc---------CchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          231 LAI-PY---------EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       231 ~~~-~~---------~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ..+ +.         ..+.+..+.+.+|++++|++++.|.+|++...
T Consensus       189 ~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v  235 (251)
T PRK11657        189 LGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQV  235 (251)
T ss_pred             cCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEe
Confidence            000 10         11234568889999999999999999986544

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=97.56  E-value=0.0015  Score=57.31  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=54.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHHhhhcCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP  229 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~  229 (358)
                      .+|.+++.|..+.||+|+++.+.+.++.+       .+++|.++...-   ..                ..|........
T Consensus       106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~  178 (232)
T PRK10877        106 QEKHVITVFTDITCGYCHKLHEQMKDYNA-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKD  178 (232)
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHhc-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCC
Confidence            46889999999999999999988776532       346666553321   11                11222221111


Q ss_pred             c--cccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          230 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       230 ~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                      .  .......+.+..+++++||+++|++++  ++|+++
T Consensus       179 ~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~  214 (232)
T PRK10877        179 VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV  214 (232)
T ss_pred             CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence            0  011112345678999999999999984  577765

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.49  E-value=0.00083  Score=47.92  Aligned_cols=58  Identities=28%  Similarity=0.527  Sum_probs=40.9

Q ss_pred             eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEE
Q 018266          178 GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVL  257 (358)
Q Consensus       178 ~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~l  257 (358)
                      ++++|+.|......++++..++.      +.+-.+.. .+                      ...+ .+|||.++|++ +
T Consensus         6 ~~~~C~~C~~~~~~~~~~~~~~~------i~~ei~~~-~~----------------------~~~~-~~ygv~~vPal-v   54 (76)
T PF13192_consen    6 FSPGCPYCPELVQLLKEAAEELG------IEVEIIDI-ED----------------------FEEI-EKYGVMSVPAL-V   54 (76)
T ss_dssp             ECSSCTTHHHHHHHHHHHHHHTT------EEEEEEET-TT----------------------HHHH-HHTT-SSSSEE-E
T ss_pred             eCCCCCCcHHHHHHHHHHHHhcC------CeEEEEEc-cC----------------------HHHH-HHcCCCCCCEE-E
Confidence            57789999988888888877763      34433444 22                      2555 89999999999 4


Q ss_pred             ECCCCcEEecC
Q 018266          258 IGPDGKTISTN  268 (358)
Q Consensus       258 id~~G~v~~~~  268 (358)
                      +  ||++++.+
T Consensus        55 I--ng~~~~~G   63 (76)
T PF13192_consen   55 I--NGKVVFVG   63 (76)
T ss_dssp             E--TTEEEEES
T ss_pred             E--CCEEEEEe
Confidence            5  58887663

...

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=97.35  E-value=0.00045  Score=48.44  Aligned_cols=36  Identities=25%  Similarity=0.643  Sum_probs=27.5

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      +..|+++||++|+...+.|.+       .+  +.+..++++.+..
T Consensus         2 i~lf~~~~C~~C~~~~~~l~~-------~~--i~~~~vdi~~~~~   37 (74)
T TIGR02196         2 VKVYTTPWCPPCKKAKEYLTS-------KG--IAFEEIDVEKDSA   37 (74)
T ss_pred             EEEEcCCCChhHHHHHHHHHH-------CC--CeEEEEeccCCHH
Confidence            467999999999998887754       23  6677788876554

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0011  Score=52.91  Aligned_cols=71  Identities=21%  Similarity=0.355  Sum_probs=57.2

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------ChhHHHHHHhhC
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEHFKSS   99 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~~~~~~~~~~~~   99 (358)
                      +.+.+|+ ++|++++||++||-=.|+-|+.-.+ ...|+.+|++|+++|  ++|+..-|+.       +.+...+|...+
T Consensus        10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQ-YegLe~Ly~ky~~~G--f~VLgFPcNQF~~QEPg~~eEI~~fC~~~   86 (162)
T COG0386          10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQ-YEGLEALYKKYKDKG--FEVLGFPCNQFGGQEPGSDEEIAKFCQLN   86 (162)
T ss_pred             eeccCCCCccHHHhCCcEEEEEEcccccCCcHh-HHHHHHHHHHHhhCC--cEEEeccccccccCCCCCHHHHHHHHHhc
Confidence            7889999 9999999999999999999987664 346788999999999  8888887762       345566666654


Q ss_pred             CC
Q 018266          100 DG  101 (358)
Q Consensus       100 ~~  101 (358)
                      .|
T Consensus        87 Yg   88 (162)
T COG0386          87 YG   88 (162)
T ss_pred             cC
Confidence            44

>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type

Probab=97.31  E-value=0.00011  Score=46.23  Aligned_cols=30  Identities=33%  Similarity=0.805  Sum_probs=26.0

Q ss_pred             eecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018266          324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .|++|++ ...|.+|+|.+|. |||+..|...
T Consensus         2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~   33 (45)
T cd02339           2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG   33 (45)
T ss_pred             CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence            5999996 5679999999995 9999999654

Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.

>cd02342 ZZ_UBA_plant Zinc finger, ZZ type

Probab=97.29  E-value=0.00012  Score=44.82  Aligned_cols=30  Identities=27%  Similarity=0.441  Sum_probs=26.6

Q ss_pred             eecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018266          324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .|++|.. +..|.+|+|..|. |||+..|-..
T Consensus         2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~   33 (43)
T cd02342           2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSR   33 (43)
T ss_pred             CCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence            5999998 7899999999998 9999999543

Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=97.26  E-value=0.0016  Score=43.99  Aligned_cols=55  Identities=20%  Similarity=0.395  Sum_probs=39.7

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+.+||++|......|.+          .++.+-.+.++.+.+.                   ...+.+..|..++|
T Consensus         1 V~vy~~~~C~~C~~~~~~L~~----------~~i~y~~~dv~~~~~~-------------------~~~l~~~~g~~~~P   51 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFLDE----------KGIPYEEVDVDEDEEA-------------------REELKELSGVRTVP   51 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHHHH----------TTBEEEEEEGGGSHHH-------------------HHHHHHHHSSSSSS
T ss_pred             cEEEEcCCCcCHHHHHHHHHH----------cCCeeeEcccccchhH-------------------HHHHHHHcCCCccC
Confidence            467899999999988777633          4466777777765311                   34566666999999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      ++++
T Consensus        52 ~v~i   55 (60)
T PF00462_consen   52 QVFI   55 (60)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=97.25  E-value=0.0031  Score=53.95  Aligned_cols=94  Identities=21%  Similarity=0.273  Sum_probs=55.6

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CH--------------HHHHHhhhc
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DH--------------KEFDLNHSI  227 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~--------------~~~~~~~~~  227 (358)
                      ....-.+++.++.|+.+.||+|+++.+.+.+    ..  .+-.+.++.+.+..  ..              +.|.+....
T Consensus        71 ~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~----~~--~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~  144 (197)
T cd03020          71 VYGKGNGKRVVYVFTDPDCPYCRKLEKELKP----NA--DGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSG  144 (197)
T ss_pred             EEcCCCCCEEEEEEECCCCccHHHHHHHHhh----cc--CceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhC
Confidence            3333347899999999999999999988766    11  11334444444432  11              122222221


Q ss_pred             CCc----cccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          228 MPW----LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       228 ~~~----~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                      ..-    .......+.+..+++.+|++++|+++ + ++|+++
T Consensus       145 ~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPtii-~-~~G~~~  184 (197)
T cd03020         145 GKVPPPAASCDNPVAANLALGRQLGVNGTPTIV-L-ADGRVV  184 (197)
T ss_pred             CCCCCCccccCchHHHHHHHHHHcCCCcccEEE-E-CCCeEe
Confidence            111    01112334567899999999999997 5 557664

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.22  E-value=0.00086  Score=50.92  Aligned_cols=72  Identities=22%  Similarity=0.337  Sum_probs=50.8

Q ss_pred             CCcEEEEEEec--------cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018266          169 AGKTIGLYFGA--------HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  240 (358)
Q Consensus       169 ~~k~vlv~F~a--------~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      +|+.++++|.+        +|||.|.+..|.+.+..++..    .++.+|.+.+...+                +-.++.
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap----~~~~~v~v~VG~rp----------------~Wk~p~   83 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAP----EDVHFVHVYVGNRP----------------YWKDPA   83 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCC----CceEEEEEEecCCC----------------cccCCC
Confidence            34557777764        699999999999988877655    67778888776431                111223


Q ss_pred             HHHHHHcCC-CceeeEEEECC
Q 018266          241 QDLCRIFNI-KGIPALVLIGP  260 (358)
Q Consensus       241 ~~l~~~~~v-~~~P~~~lid~  260 (358)
                      ..+....++ .++||++=.++
T Consensus        84 n~FR~d~~~lt~vPTLlrw~~  104 (128)
T KOG3425|consen   84 NPFRKDPGILTAVPTLLRWKR  104 (128)
T ss_pred             CccccCCCceeecceeeEEcC
Confidence            455666666 89999998864

>TIGR02180 GRX_euk Glutaredoxin

Probab=97.21  E-value=0.00041  Score=50.26  Aligned_cols=40  Identities=23%  Similarity=0.428  Sum_probs=27.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++|||+|++..+.|.++.  ...   .++++-|+.+.+..
T Consensus         1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~   40 (84)
T TIGR02180         1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGS   40 (84)
T ss_pred             CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChH
Confidence            46899999999999999888765  221   25566665554433

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=97.20  E-value=0.0025  Score=46.47  Aligned_cols=65  Identities=22%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC--CCc
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG  251 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~  251 (358)
                      +..|+.+||++|......|+++..++     .++.+..++++.+..+                   ..++.+.++  +..
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~-----~~i~~~~idi~~~~~~-------------------~~el~~~~~~~~~~   58 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEER-----DDFDYRYVDIHAEGIS-------------------KADLEKTVGKPVET   58 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhcccc-----cCCcEEEEECCCChHH-------------------HHHHHHHHCCCCCc
Confidence            56799999999999999999887654     3466777777754311                   133444444  588


Q ss_pred             eeeEEEECCCCcEE
Q 018266          252 IPALVLIGPDGKTI  265 (358)
Q Consensus       252 ~P~~~lid~~G~v~  265 (358)
                      +|+++ +  +|+.+
T Consensus        59 vP~if-i--~g~~i   69 (85)
T PRK11200         59 VPQIF-V--DQKHI   69 (85)
T ss_pred             CCEEE-E--CCEEE
Confidence            99976 4  56654

>PF13728 TraF: F plasmid transfer operon protein

Probab=97.14  E-value=0.00056  Score=59.21  Aligned_cols=48  Identities=31%  Similarity=0.434  Sum_probs=42.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      -.|.++.+++-|++||.+.|+.|..+.|.+..+++++   |  ++|+.|++|.
T Consensus       113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g--~~v~~vs~DG  160 (215)
T PF13728_consen  113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---G--FSVIPVSLDG  160 (215)
T ss_pred             HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---C--CEEEEEecCC
Confidence            4455567899999999999999999999999999988   4  8899999995

>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=97.13  E-value=0.00048  Score=66.64  Aligned_cols=66  Identities=17%  Similarity=0.312  Sum_probs=43.6

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHH-HHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLV-QLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~-~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      +-++|+|+|+|||+||-.||.+.+..- +.....+-.+  +....+++..+...                ..++.++||+
T Consensus       471 ~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~--~vlLqaDvT~~~p~----------------~~~lLk~~~~  532 (569)
T COG4232         471 EAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQD--VVLLQADVTANDPA----------------ITALLKRLGV  532 (569)
T ss_pred             hCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCC--eEEEEeeecCCCHH----------------HHHHHHHcCC
Confidence            345569999999999999999999654 3344444444  44444444332221                1367888888


Q ss_pred             CCCCc
Q 018266          118 DAYPF  122 (358)
Q Consensus       118 ~~~P~  122 (358)
                      .+-|+
T Consensus       533 ~G~P~  537 (569)
T COG4232         533 FGVPT  537 (569)
T ss_pred             CCCCE
Confidence            88885

>cd02344 ZZ_HERC2 Zinc finger, ZZ type

Probab=97.12  E-value=0.00026  Score=44.45  Aligned_cols=29  Identities=31%  Similarity=0.793  Sum_probs=26.1

Q ss_pred             eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018266          324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  352 (358)
Q Consensus       324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~  352 (358)
                      .|++|+. ...|.+|+|.+|. |||...|-.
T Consensus         2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~   32 (45)
T cd02344           2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFK   32 (45)
T ss_pred             CCCCCCCCCCccCeEECCCCCCccchHHhhC
Confidence            5999996 7899999999999 999999954

Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.06  E-value=0.0014  Score=43.86  Aligned_cols=41  Identities=27%  Similarity=0.617  Sum_probs=32.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.||++||++|+.+.+.+.++ . ....  ++.++.++++....
T Consensus         1 l~~~~~~~c~~c~~~~~~~~~~-~-~~~~--~~~~~~~~~~~~~~   41 (69)
T cd01659           1 LVLFYAPWCPFCQALRPVLAEL-A-LLNK--GVKFEAVDVDEDPA   41 (69)
T ss_pred             CEEEECCCChhHHhhhhHHHHH-H-hhCC--CcEEEEEEcCCChH
Confidence            4789999999999999999988 2 3333  38899998886553

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02343 ZZ_EF Zinc finger, ZZ type

Probab=97.05  E-value=0.00025  Score=44.93  Aligned_cols=28  Identities=29%  Similarity=0.759  Sum_probs=26.0

Q ss_pred             eecCcCCCCcceEEEcCCCC-CCCCcccc
Q 018266          324 VCDCCKMRGRFWAFSCDVCN-YDLHPKCV  351 (358)
Q Consensus       324 ~C~~C~e~g~~~~~~~~~~~-~~~~~~~~  351 (358)
                      .|++|+....+.+|+|.+|. |||+..|-
T Consensus         2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf   30 (48)
T cd02343           2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCF   30 (48)
T ss_pred             CCCCCCCcCCCceEECCCCCCchhHHHHH
Confidence            49999999999999999999 99999993

Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.0014  Score=53.32  Aligned_cols=87  Identities=23%  Similarity=0.238  Sum_probs=60.9

Q ss_pred             cCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHHHHHHhhCC----
Q 018266           29 LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEHFKSSD----  100 (358)
Q Consensus        29 ~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~~~~~~~~~----  100 (358)
                      .+..-+ ++|+++.||+|++.|| ..+--.|....-.|-..+.++++.+  -+++.+++|+..  -+|...-.+.-    
T Consensus        19 VdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n--~eVig~S~DS~fshlAW~ntprk~gGlg~   96 (196)
T KOG0852|consen   19 VDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLN--TEVLGISTDSVFSHLAWINTPRKQGGLGP   96 (196)
T ss_pred             EcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcC--CeEEEEeccchhhhhhHhcCchhhCCcCc
Confidence            333444 9999999999999999 5565669888888888999998887  889999999642  23333333311    


Q ss_pred             --Ccccccccceeeecccc
Q 018266          101 --GTLIEEDLIGLIEDYGA  117 (358)
Q Consensus       101 --~~~~~~~~~~l~~~~gi  117 (358)
                        ..++.+...++++.||+
T Consensus        97 ~~iPllsD~~~~IsrdyGv  115 (196)
T KOG0852|consen   97 LNIPLLSDLNHEISRDYGV  115 (196)
T ss_pred             cccceeeccchhhHHhcCc
Confidence              13445555566666665

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.96  E-value=0.0019  Score=54.82  Aligned_cols=31  Identities=26%  Similarity=0.366  Sum_probs=29.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHH
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTL   71 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l   71 (358)
                      +++.+++.|||+||.+|.++...++.+++..
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~   46 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF   46 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh
Confidence            6899999999999999999999999999887

>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type

Probab=96.95  E-value=0.00042  Score=44.30  Aligned_cols=31  Identities=29%  Similarity=0.757  Sum_probs=27.8

Q ss_pred             eeecCcCC-CCcceEEEcCCCC---CCCCcccccC
Q 018266          323 YVCDCCKM-RGRFWAFSCDVCN---YDLHPKCVEG  353 (358)
Q Consensus       323 ~~C~~C~e-~g~~~~~~~~~~~---~~~~~~~~~~  353 (358)
                      |.|++|++ +..|.+|+|.+|+   |||...|-..
T Consensus         1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~   35 (48)
T cd02341           1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVK   35 (48)
T ss_pred             CCCCCCCCCccccceEECCCCCCCCCccCHHHHhC
Confidence            56999998 8999999999998   9999999544

Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd02334 ZZ_dystrophin Zinc finger, ZZ type

Probab=96.93  E-value=0.00048  Score=44.20  Aligned_cols=29  Identities=31%  Similarity=0.663  Sum_probs=26.0

Q ss_pred             eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018266          324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  352 (358)
Q Consensus       324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~  352 (358)
                      .|++|+. ...|.+|+|.+|. |||...|-.
T Consensus         2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~   32 (49)
T cd02334           2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF   32 (49)
T ss_pred             CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence            5999996 6899999999999 999999943

Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.

>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.0015  Score=52.81  Aligned_cols=57  Identities=25%  Similarity=0.433  Sum_probs=52.1

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+.+|+ |+|+.++||++|+-=-|+-|+.=..-...|..++++|+++|  ++|++--|.
T Consensus        19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~G--l~ILaFPCN   76 (171)
T KOG1651|consen   19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQG--LEILAFPCN   76 (171)
T ss_pred             EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCC--eEEEEeccc
Confidence            7899999 99999999999999999999998866779999999999999  888877775

>cd02249 ZZ Zinc finger, ZZ type

Probab=96.91  E-value=0.00046  Score=43.95  Aligned_cols=32  Identities=31%  Similarity=0.617  Sum_probs=29.0

Q ss_pred             eeecCcCCCCcceEEEcCCCC-CCCCcccccCc
Q 018266          323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEGI  354 (358)
Q Consensus       323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~~  354 (358)
                      |.|+.|.....|.+|+|.+|. |||+..|-...
T Consensus         1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~   33 (46)
T cd02249           1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG   33 (46)
T ss_pred             CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence            579999999999999999999 99999996654

Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.

>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins

Probab=96.79  E-value=0.00049  Score=56.24  Aligned_cols=50  Identities=20%  Similarity=0.408  Sum_probs=35.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhH-HH--HHHHHHHhcCCCceEEEEEEecCCh
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTP-QL--VQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p-~~--~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +..+..++|+|+|.++++||+.|..|.. .|  .++++.++++     +|.|.+|.++
T Consensus        30 ~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~-----FI~VkvDree   82 (163)
T PF03190_consen   30 LEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRN-----FIPVKVDREE   82 (163)
T ss_dssp             HHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH------EEEEEETTT
T ss_pred             HHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCC-----EEEEEecccc
Confidence            7777788999999999999999998886 33  4477777766     7777777654

; PDB: 3IRA_A.

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=96.77  E-value=0.0042  Score=55.44  Aligned_cols=68  Identities=16%  Similarity=0.213  Sum_probs=51.4

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +..|||.||-+.++.|..+...|..|+.+|..     +.++-|.....                        .+...|..
T Consensus       146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-----vKFvkI~a~~~------------------------~~~~~f~~  196 (265)
T PF02114_consen  146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE-----VKFVKIRASKC------------------------PASENFPD  196 (265)
T ss_dssp             T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-----SEEEEEEECGC------------------------CTTTTS-T
T ss_pred             CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-----eEEEEEehhcc------------------------CcccCCcc
Confidence            45899999999999999999999999999964     66666655421                        14567889


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      ..+|+++++ ++|.++..
T Consensus       197 ~~LPtllvY-k~G~l~~~  213 (265)
T PF02114_consen  197 KNLPTLLVY-KNGDLIGN  213 (265)
T ss_dssp             TC-SEEEEE-ETTEEEEE
T ss_pred             cCCCEEEEE-ECCEEEEe
Confidence            999999999 78888765

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=96.75  E-value=0.0035  Score=44.37  Aligned_cols=36  Identities=22%  Similarity=0.609  Sum_probs=26.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++||++|+++.+.|.++       +  +++..++++.+..
T Consensus         2 v~ly~~~~C~~C~~~~~~L~~~-------~--~~~~~idi~~~~~   37 (77)
T TIGR02200         2 ITVYGTTWCGYCAQLMRTLDKL-------G--AAYEWVDIEEDEG   37 (77)
T ss_pred             EEEEECCCChhHHHHHHHHHHc-------C--CceEEEeCcCCHh
Confidence            4689999999999999977653       3  3455677775543

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.72  E-value=0.0012  Score=55.66  Aligned_cols=60  Identities=15%  Similarity=0.196  Sum_probs=47.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +.++++|.|||.|.+.|+.+.|.|.+++.+++..+  +.+-.|++..-.                    ..+.+|+|..-
T Consensus       143 k~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~--lkFGkvDiGrfp--------------------d~a~kfris~s  200 (265)
T KOG0914|consen  143 KRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNL--LKFGKVDIGRFP--------------------DVAAKFRISLS  200 (265)
T ss_pred             CceEEEEEEEeecChhhcccccccHHHHHHhCCCC--CcccceeeccCc--------------------ChHHheeeccC
Confidence            34699999999999999999999999999998876  556555554322                    35677888777


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |.
T Consensus       201 ~~  202 (265)
T KOG0914|consen  201 PG  202 (265)
T ss_pred             cc
Confidence            74

>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein

Probab=96.71  E-value=0.00091  Score=42.10  Aligned_cols=32  Identities=34%  Similarity=0.717  Sum_probs=28.5

Q ss_pred             ceeecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018266          322 AYVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       322 ~~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .+.|+.|.....|-+|+|..|. |||.+.|=..
T Consensus         4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~   36 (44)
T smart00291        4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAK   36 (44)
T ss_pred             CcCCCCCCCCCcCCEEECCCCCCccchHHHHhC
Confidence            4679999999999999999997 9999999543

Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.0033  Score=53.44  Aligned_cols=69  Identities=14%  Similarity=0.313  Sum_probs=54.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +++.+++.||+.||.+|.++...+..+.+..++       +.+++.+.+.                     ...++..+.
T Consensus        16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~-------~~~~k~~a~~---------------------~~eis~~~~   67 (227)
T KOG0911|consen   16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKN-------AQFLKLEAEE---------------------FPEISNLIA   67 (227)
T ss_pred             ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhh-------heeeeehhhh---------------------hhHHHHHHH
Confidence            678999999999999999999888888777743       5556666543                     578999999


Q ss_pred             CCceeeEEEECCCCcEEe
Q 018266          249 IKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~  266 (358)
                      +.+.|.+.++ ..|+.+.
T Consensus        68 v~~vp~~~~~-~~~~~v~   84 (227)
T KOG0911|consen   68 VEAVPYFVFF-FLGEKVD   84 (227)
T ss_pred             HhcCceeeee-ecchhhh
Confidence            9999999988 4444443

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.64  E-value=0.0041  Score=44.71  Aligned_cols=63  Identities=27%  Similarity=0.406  Sum_probs=41.4

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|.++|||+|......|.++..        .+.++-+..+.+..+.                  ...+.+..|..++|
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~--------~~~~~~v~~~~~~~~~------------------~~~~~~~~g~~~~P   55 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV--------KPAVVELDQHEDGSEI------------------QDYLQELTGQRTVP   55 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC--------CcEEEEEeCCCChHHH------------------HHHHHHHhCCCCCC
Confidence            467889999999998888776533        3456666665442111                  23566677899999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .++ +  +|+.+
T Consensus        56 ~v~-~--~g~~i   64 (82)
T cd03419          56 NVF-I--GGKFI   64 (82)
T ss_pred             eEE-E--CCEEE
Confidence            974 4  45543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.59  E-value=0.00056  Score=43.52  Aligned_cols=31  Identities=35%  Similarity=0.747  Sum_probs=24.9

Q ss_pred             ceeecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018266          322 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  352 (358)
Q Consensus       322 ~~~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~  352 (358)
                      .+.|++|.. ...|.+|+|..|. |||.+.|-.
T Consensus         4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~   36 (46)
T PF00569_consen    4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFS   36 (46)
T ss_dssp             SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHH
T ss_pred             CeECcCCCCCcCcCCeEECCCCCCCchhhHHHh
Confidence            578999998 7789999999999 999999943

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=96.55  E-value=0.0062  Score=44.88  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=49.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC--CC----HHHHHH-hhh-cCCccccccCch-hHHHHH
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--RD----HKEFDL-NHS-IMPWLAIPYEDR-ARQDLC  244 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~~----~~~~~~-~~~-~~~~~~~~~~~~-~~~~l~  244 (358)
                      +..|+.+.||+|....+.+.++.....    .++.+..+.+.  ..    ...... ... ........+... ......
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   76 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADD----GGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALA   76 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcC----CcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            357899999999999999988874433    66777776653  22    111111 000 000000000000 356788


Q ss_pred             HHcCCCceeeEEEEC
Q 018266          245 RIFNIKGIPALVLIG  259 (358)
Q Consensus       245 ~~~~v~~~P~~~lid  259 (358)
                      +.+|+.++|++++-|
T Consensus        77 ~~~g~~g~Pt~v~~~   91 (98)
T cd02972          77 RALGVTGTPTFVVNG   91 (98)
T ss_pred             HHcCCCCCCEEEECC
Confidence            899999999999875

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd02345 ZZ_dah Zinc finger, ZZ type

Probab=96.36  E-value=0.0022  Score=41.27  Aligned_cols=29  Identities=31%  Similarity=0.742  Sum_probs=26.4

Q ss_pred             eecCcCC-CCcceEEEcCCCC-CCCCccccc
Q 018266          324 VCDCCKM-RGRFWAFSCDVCN-YDLHPKCVE  352 (358)
Q Consensus       324 ~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~  352 (358)
                      .|++|+. ...|.+|+|.+|. |||...|-.
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~   32 (49)
T cd02345           2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYT   32 (49)
T ss_pred             cCCCCCCCCceEeeEECCCCCCcCchHHHHh
Confidence            5999999 8899999999999 999999944

Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.35  E-value=0.0026  Score=50.38  Aligned_cols=51  Identities=24%  Similarity=0.395  Sum_probs=34.4

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ++.+..+.-++-|..+|||.|....|.|.++++...    ++++-.+..|.+.+.
T Consensus        36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p----~i~~~~i~rd~~~el   86 (129)
T PF14595_consen   36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP----NIEVRIILRDENKEL   86 (129)
T ss_dssp             HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T----TEEEEEE-HHHHHHH
T ss_pred             HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC----CCeEEEEEecCChhH
Confidence            444567889999999999999999999999999642    377777877765543

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=96.33  E-value=0.018  Score=40.00  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++||++|......|.+          .++.+..+.+|.+.+.                   ...+.+..++.++|
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~----------~~i~~~~~~i~~~~~~-------------------~~~~~~~~~~~~vP   52 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE----------RGIPFEEVDVDEDPEA-------------------LEELKKLNGYRSVP   52 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH----------CCCCeEEEeCCCCHHH-------------------HHHHHHHcCCcccC
Confidence            467899999999987766644          2345556666654311                   12344444788999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      ++++
T Consensus        53 ~i~~   56 (73)
T cd02976          53 VVVI   56 (73)
T ss_pred             EEEE
Confidence            9875

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>cd02338 ZZ_PCMF_like Zinc finger, ZZ type

Probab=96.32  E-value=0.0025  Score=41.10  Aligned_cols=30  Identities=30%  Similarity=0.723  Sum_probs=26.2

Q ss_pred             eecCcC-CCCcceEEEcCCCC-CCCCcccccC
Q 018266          324 VCDCCK-MRGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       324 ~C~~C~-e~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .|++|+ ....|.+|+|..|. |||...|-..
T Consensus         2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~   33 (49)
T cd02338           2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDS   33 (49)
T ss_pred             CCCCCcCCCcEEeeEEeCCCCCCccchhHHhC
Confidence            599999 67889999999998 9999999443

Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=96.31  E-value=0.027  Score=38.82  Aligned_cols=60  Identities=20%  Similarity=0.370  Sum_probs=40.4

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|.++||++|+.....|.+.          ++.+..++++.+.+                   ....+.+..+...+|
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~----------~i~~~~~di~~~~~-------------------~~~~l~~~~~~~~~P   52 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL----------GIEFEEIDILEDGE-------------------LREELKELSGWPTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----------CCcEEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            4578899999999988877653          24566667665532                   124566667778899


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      ++++   +|+.+
T Consensus        53 ~~~~---~~~~i   61 (72)
T cd02066          53 QIFI---NGEFI   61 (72)
T ss_pred             EEEE---CCEEE
Confidence            8754   55554

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>cd02335 ZZ_ADA2 Zinc finger, ZZ type

Probab=96.28  E-value=0.0024  Score=41.15  Aligned_cols=31  Identities=29%  Similarity=0.686  Sum_probs=26.2

Q ss_pred             eeecCcCCCCcc-eEEEcCCCC-CCCCcccccC
Q 018266          323 YVCDCCKMRGRF-WAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       323 ~~C~~C~e~g~~-~~~~~~~~~-~~~~~~~~~~  353 (358)
                      |.|++|.+...+ .+|+|.+|. |||...|-..
T Consensus         1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~   33 (49)
T cd02335           1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFSA   33 (49)
T ss_pred             CCCCCcCCCCCCCcEEECCCCCCcchhHHhhhC
Confidence            469999997666 999999995 9999999543

Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=96.27  E-value=0.045  Score=45.65  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=34.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS  213 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~  213 (358)
                      .+++.++.|+...||+|..+.+.+..+.+++.    .++.+..+.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~----~~v~~~~~~   54 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP----KDVKFEKVP   54 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC----CCceEEEcC
Confidence            57899999999999999999999999988875    455555544

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=96.26  E-value=0.03  Score=48.15  Aligned_cols=114  Identities=12%  Similarity=0.139  Sum_probs=76.0

Q ss_pred             ccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH-HhhhcC
Q 018266          150 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD-LNHSIM  228 (358)
Q Consensus       150 ~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~-~~~~~~  228 (358)
                      ++|.+.+  +| ...+.+..|+++||.+-..+|..|...+..|..|..++....-.++.++.|+--.....+. ..++..
T Consensus         9 ~~p~W~i--~~-~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~l~~r   85 (238)
T PF04592_consen    9 PPPPWKI--GG-QDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWELKRR   85 (238)
T ss_pred             CCCCceE--CC-chHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHHHHHh
Confidence            4555653  22 3466778899999999999999999999999999999987444567777776543333222 122222


Q ss_pred             CccccccC--chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          229 PWLAIPYE--DRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       229 ~~~~~~~~--~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      --..+|+.  +.....+...++-.. =-++|+|+=|++++.
T Consensus        86 ~~~~ipVyqq~~~q~dvW~~L~G~k-dD~~iyDRCGrL~~~  125 (238)
T PF04592_consen   86 VSEHIPVYQQDENQPDVWELLNGSK-DDFLIYDRCGRLTYH  125 (238)
T ss_pred             CCCCCceecCCccccCHHHHhCCCc-CcEEEEeccCcEEEE
Confidence            11235554  234456666666443 357899999999987

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=96.16  E-value=0.00061  Score=58.05  Aligned_cols=58  Identities=22%  Similarity=0.448  Sum_probs=43.5

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      -+++.|+|||||.|+...|+|...+.--.+-+  +.+..|++..+.                    .|.-+|-+.+.|+.
T Consensus        41 ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~--v~va~VDvt~np--------------------gLsGRF~vtaLptI   98 (248)
T KOG0913|consen   41 EWMIEFGAPWCPSCSDLIPHLENFATVSLDLG--VKVAKVDVTTNP--------------------GLSGRFLVTALPTI   98 (248)
T ss_pred             HHHHHhcCCCCccccchHHHHhccCCccCCCc--eeEEEEEEEecc--------------------ccceeeEEEecceE
Confidence            47799999999999999999988776544444  666666655433                    56777778888864

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=96.11  E-value=0.03  Score=42.25  Aligned_cols=74  Identities=16%  Similarity=0.277  Sum_probs=52.6

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      .++++|+=.++.||........|++.++...    +++.+.++.+-...                   +..+.+++.|||
T Consensus        19 ~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~----~~~~~y~l~v~~~R-------------------~vSn~IAe~~~V   75 (105)
T PF11009_consen   19 EKPVLIFKHSTRCPISAMALREFEKFWEESP----DEIPVYYLDVIEYR-------------------PVSNAIAEDFGV   75 (105)
T ss_dssp             -SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT--------EEEEEGGGGH-------------------HHHHHHHHHHT-
T ss_pred             cCcEEEEEeCCCChhhHHHHHHHHHHhhcCC----ccceEEEEEEEeCc-------------------hhHHHHHHHhCC
Confidence            5788888899999999988888888887765    33788888775443                   235789999999


Q ss_pred             C-ceeeEEEECCCCcEEec
Q 018266          250 K-GIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~-~~P~~~lid~~G~v~~~  267 (358)
                      . .-|.+++| ++|++++.
T Consensus        76 ~HeSPQ~ili-~~g~~v~~   93 (105)
T PF11009_consen   76 KHESPQVILI-KNGKVVWH   93 (105)
T ss_dssp             ---SSEEEEE-ETTEEEEE
T ss_pred             CcCCCcEEEE-ECCEEEEE
Confidence            6 57999999 99999865

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=96.06  E-value=0.012  Score=47.58  Aligned_cols=41  Identities=27%  Similarity=0.515  Sum_probs=32.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~   85 (358)
                      .++++++.|+.++||+|+++.|.+.++..++.    ++.+++...
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~----~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP----DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC----CceEEEEeC
Confidence            47899999999999999999999988776542    255666544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=96.04  E-value=0.023  Score=40.68  Aligned_cols=63  Identities=19%  Similarity=0.347  Sum_probs=40.9

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      .+.-++.|+.+||++|......|.+          .++.+..+.++.+.+                    ...+.+..|.
T Consensus         6 ~~~~V~ly~~~~Cp~C~~ak~~L~~----------~gi~y~~idi~~~~~--------------------~~~~~~~~g~   55 (79)
T TIGR02190         6 KPESVVVFTKPGCPFCAKAKATLKE----------KGYDFEEIPLGNDAR--------------------GRSLRAVTGA   55 (79)
T ss_pred             CCCCEEEEECCCCHhHHHHHHHHHH----------cCCCcEEEECCCChH--------------------HHHHHHHHCC
Confidence            3444667999999999988877753          234444566665431                    2345556788


Q ss_pred             CceeeEEEECCCCcEE
Q 018266          250 KGIPALVLIGPDGKTI  265 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~  265 (358)
                      ..+|.+++   +|+.+
T Consensus        56 ~~vP~i~i---~g~~i   68 (79)
T TIGR02190        56 TTVPQVFI---GGKLI   68 (79)
T ss_pred             CCcCeEEE---CCEEE
Confidence            99999964   45543

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=96.03  E-value=0.015  Score=42.44  Aligned_cols=60  Identities=18%  Similarity=0.329  Sum_probs=38.0

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC--CCc
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG  251 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~  251 (358)
                      ++.|..+|||+|.+....|.++..++     .++.+..+.++.+...                   ...+.+.++  ...
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~-----~~i~~~~idi~~~~~~-------------------~~~l~~~~g~~~~t   57 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIER-----ADFEFRYIDIHAEGIS-------------------KADLEKTVGKPVET   57 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCccc-----CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCCC
Confidence            56788999999999888887764332     2345555666543211                   234555555  378


Q ss_pred             eeeEEE
Q 018266          252 IPALVL  257 (358)
Q Consensus       252 ~P~~~l  257 (358)
                      +|.+++
T Consensus        58 VP~ifi   63 (86)
T TIGR02183        58 VPQIFV   63 (86)
T ss_pred             cCeEEE
Confidence            999853

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=96.03  E-value=0.11  Score=42.10  Aligned_cols=120  Identities=11%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHH-hhcccCCceEEEEE-eCCCCH--------HHHHHhhhcCCc
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE-LKTTANHCFEVVLV-STDRDH--------KEFDLNHSIMPW  230 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~-~~~~~~~~~~vv~v-~~d~~~--------~~~~~~~~~~~~  230 (358)
                      ++.+...+.||+-+|...|-.-..=..-.|.+..+.+. |..   ++++...| +.|...        ...++.-+.+||
T Consensus        28 ~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p~  104 (160)
T PF09695_consen   28 QPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFPW  104 (160)
T ss_pred             cccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhCCC
Confidence            34455678899988877765432222223444444443 443   66776664 555321        223333335666


Q ss_pred             cccccCchhHHHHHHHcCCCc-eeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018266          231 LAIPYEDRARQDLCRIFNIKG-IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  296 (358)
Q Consensus       231 ~~~~~~~~~~~~l~~~~~v~~-~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~  296 (358)
                      -.+-.  |.+..+.+.|++.. --.++++|++|+|++..       .|    ..+++.+++..+.++
T Consensus       105 s~~vl--D~~G~~~~aW~L~~~~SaiiVlDK~G~V~F~k-------~G----~Ls~~Ev~qVi~Ll~  158 (160)
T PF09695_consen  105 SQFVL--DSNGVVRKAWQLQEESSAIIVLDKQGKVQFVK-------EG----ALSPAEVQQVIALLK  158 (160)
T ss_pred             cEEEE--cCCCceeccccCCCCCceEEEEcCCccEEEEE-------CC----CCCHHHHHHHHHHHh
Confidence            55443  33456777888754 35688999999999883       44    345666666655544

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=96.01  E-value=0.0081  Score=53.14  Aligned_cols=49  Identities=18%  Similarity=0.226  Sum_probs=42.2

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      -.+.++.++.-|++||.+.|++|.++.|.+..+++++   |  ++++.||+|..
T Consensus       143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y---g--i~v~~VS~DG~  191 (256)
T TIGR02739       143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY---G--ISVIPISVDGT  191 (256)
T ss_pred             HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh---C--CeEEEEecCCC
Confidence            3455566789999999999999999999999999987   3  88999999964

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A

Probab=96.01  E-value=0.022  Score=47.75  Aligned_cols=97  Identities=16%  Similarity=0.203  Sum_probs=58.1

Q ss_pred             cchhhHhhhhc-cCCceecCCCceeeecccCCcE-EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018266          140 GGKLEQLLAIE-GRDYVLSRDHRKITVSELAGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  217 (358)
Q Consensus       140 ~~~l~~~~~~~-~p~f~l~~~g~~~~l~~~~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  217 (358)
                      ...+..++... .|-+. ..+...+..---.+++ +++.|..............|..++++++    ..+.++++..+..
T Consensus        64 ~~~l~~fI~~~~~P~v~-~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~----~~~~f~~~d~~~~  138 (184)
T PF13848_consen   64 PEELKKFIKKNSFPLVP-ELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFK----GKINFVYVDADDF  138 (184)
T ss_dssp             HHHHHHHHHHHSSTSCE-EESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTT----TTSEEEEEETTTT
T ss_pred             HHHHHHHHHHhcccccc-ccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcC----CeEEEEEeehHHh
Confidence            34455555443 33333 3444332222223444 7777765444445666667777777776    5677777777632


Q ss_pred             HHHHHHhhhcCCccccccCchhHHHHHHHcCCC--ceeeEEEECCCCcE
Q 018266          218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKT  264 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~v  264 (358)
                                             ..+.+.||+.  .+|++++++.....
T Consensus       139 -----------------------~~~~~~~~i~~~~~P~~vi~~~~~~~  164 (184)
T PF13848_consen  139 -----------------------PRLLKYFGIDEDDLPALVIFDSNKGK  164 (184)
T ss_dssp             -----------------------HHHHHHTTTTTSSSSEEEEEETTTSE
T ss_pred             -----------------------HHHHHHcCCCCccCCEEEEEECCCCc
Confidence                                   5677899998  89999999855443

...

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=96.00  E-value=0.0075  Score=53.04  Aligned_cols=47  Identities=19%  Similarity=0.154  Sum_probs=41.2

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      .+.++.+++-|++||.+.|++|.++.|.+..+++++.     ++++.||+|.
T Consensus       137 ~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg-----~~v~~VS~DG  183 (248)
T PRK13703        137 AIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG-----LSVIPVSVDG  183 (248)
T ss_pred             HHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC-----CeEEEEecCC
Confidence            3555667899999999999999999999999999873     7899999995

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=95.99  E-value=0.021  Score=44.24  Aligned_cols=44  Identities=18%  Similarity=0.616  Sum_probs=31.9

Q ss_pred             CCCCEEEEEEeCC-------CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           40 CGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        40 ~~gk~vlv~F~a~-------wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ..|++++|.|+++       |||.|..-.|.+.++.....+.   ..+|.+.+.
T Consensus        17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~---~~lv~v~VG   67 (119)
T PF06110_consen   17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPEN---ARLVYVEVG   67 (119)
T ss_dssp             TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STT---EEEEEEE--
T ss_pred             cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCC---ceEEEEEcC
Confidence            4578999999965       9999999999999887764332   667777664

; PDB: 1V9W_A 1WOU_A.

>KOG3425 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.91  E-value=0.022  Score=43.42  Aligned_cols=44  Identities=20%  Similarity=0.555  Sum_probs=33.7

Q ss_pred             CCCEEEEEEeCC--------CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           41 GGKTICLFFSAN--------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        41 ~gk~vlv~F~a~--------wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +|+.++++|+++        |||.|.+-.|.+.++-+..   ..+..+|.+.+..
T Consensus        24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~a---p~~~~~v~v~VG~   75 (128)
T KOG3425|consen   24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHA---PEDVHFVHVYVGN   75 (128)
T ss_pred             CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhC---CCceEEEEEEecC
Confidence            578899999975        9999999999998876633   3336677776653

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.71  E-value=0.054  Score=38.04  Aligned_cols=60  Identities=17%  Similarity=0.237  Sum_probs=37.8

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC-ce
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-GI  252 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-~~  252 (358)
                      +..|+.+|||+|......|++          .++.+-.+.++.+.+.                   ...+.+..+.. ++
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~i~i~~~~~~-------------------~~~~~~~~~~~~~v   52 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK----------KGVDYEEIDVDGDPAL-------------------REEMINRSGGRRTV   52 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH----------CCCcEEEEECCCCHHH-------------------HHHHHHHhCCCCcc
Confidence            457889999999988777654          2344555666654321                   23455566766 89


Q ss_pred             eeEEEECCCCcEE
Q 018266          253 PALVLIGPDGKTI  265 (358)
Q Consensus       253 P~~~lid~~G~v~  265 (358)
                      |.++ +  +|+.+
T Consensus        53 P~v~-i--~g~~i   62 (75)
T cd03418          53 PQIF-I--GDVHI   62 (75)
T ss_pred             CEEE-E--CCEEE
Confidence            9774 4  34444

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=95.65  E-value=0.036  Score=39.51  Aligned_cols=54  Identities=15%  Similarity=0.337  Sum_probs=35.0

Q ss_pred             EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018266          175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  254 (358)
Q Consensus       175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~  254 (358)
                      ..|+.+|||+|......|++.          ++.+-.+.++.+.+.                   ..++.+..|...+|+
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~~----------~i~~~~~di~~~~~~-------------------~~~~~~~~g~~~vP~   52 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSSK----------GVTFTEIRVDGDPAL-------------------RDEMMQRSGRRTVPQ   52 (79)
T ss_pred             EEEecCCChhHHHHHHHHHHc----------CCCcEEEEecCCHHH-------------------HHHHHHHhCCCCcCE
Confidence            568899999999888777642          233444455544311                   245555668889999


Q ss_pred             EEE
Q 018266          255 LVL  257 (358)
Q Consensus       255 ~~l  257 (358)
                      +++
T Consensus        53 i~i   55 (79)
T TIGR02181        53 IFI   55 (79)
T ss_pred             EEE
Confidence            743

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.064  Score=53.22  Aligned_cols=109  Identities=21%  Similarity=0.261  Sum_probs=64.5

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  242 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      ..-.+||++|....+||..|.-+...=   .++++-++.      .+|-|.+|.+.              -|..+..-..
T Consensus        39 A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~------~FV~IKVDREE--------------RPDvD~~Ym~   98 (667)
T COG1331          39 AKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE------NFVPVKVDREE--------------RPDVDSLYMN   98 (667)
T ss_pred             HHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh------CceeeeEChhh--------------ccCHHHHHHH
Confidence            344679999999999999999876321   223333332      48888888754              2333333344


Q ss_pred             HHHHcC-CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHH
Q 018266          243 LCRIFN-IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALK  296 (358)
Q Consensus       243 l~~~~~-v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~  296 (358)
                      +++... --++|-.+++-|+|+..+...  ..-..+...-|...+.++.|...++
T Consensus        99 ~~q~~tG~GGWPLtVfLTPd~kPFfagT--Y~P~e~r~g~pGf~~lL~~i~~~W~  151 (667)
T COG1331          99 ASQAITGQGGWPLTVFLTPDGKPFFAGT--YFPKEDRYGRPGFKQLLEAIRETWR  151 (667)
T ss_pred             HHHHhccCCCCceeEEECCCCceeeeee--ecCCcccCCCcCHHHHHHHHHHHHH
Confidence            444443 347999999999999986532  1111111222344455555555554

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=95.50  E-value=0.032  Score=40.52  Aligned_cols=39  Identities=10%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|+.+||++|++....|+++..++.  +  +.+..++++.+
T Consensus         3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~--i~~~~idi~~~   41 (85)
T PRK11200          3 VVIFGRPGCPYCVRAKELAEKLSEERD--D--FDYRYVDIHAE   41 (85)
T ss_pred             EEEEeCCCChhHHHHHHHHHhhccccc--C--CcEEEEECCCC
Confidence            578999999999999999999887542  3  66888888765

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=95.46  E-value=0.049  Score=40.90  Aligned_cols=63  Identities=17%  Similarity=0.279  Sum_probs=36.5

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+|||+|.+....|.+.    +    -.+.  .+.+|.+.+..                +....+.+..|...+|
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~~----~----i~~~--~vdid~~~~~~----------------~~~~~l~~~tg~~tvP   63 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLTL----G----VNPA--VHEIDKEPAGK----------------DIENALSRLGCSPAVP   63 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----C----CCCE--EEEcCCCccHH----------------HHHHHHHHhcCCCCcC
Confidence            4568889999999877666442    2    3334  45555432110                0123455556788999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .++ +  +|+.+
T Consensus        64 ~Vf-i--~g~~i   72 (99)
T TIGR02189        64 AVF-V--GGKLV   72 (99)
T ss_pred             eEE-E--CCEEE
Confidence            974 5  35443

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]

Probab=95.41  E-value=0.0063  Score=54.74  Aligned_cols=32  Identities=34%  Similarity=0.719  Sum_probs=29.2

Q ss_pred             ceeecCcCC-CCcceEEEcCCCC-CCCCcccccC
Q 018266          322 AYVCDCCKM-RGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       322 ~~~C~~C~e-~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      .-.||.|.. ...|-+|+|..|. |||+..|-.+
T Consensus       152 ~v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~  185 (278)
T KOG4582|consen  152 SVPCDNCGKPGIVGARYKCTVCPDYDLCERCEAG  185 (278)
T ss_pred             cccCCCccCCccccceeeecCCCccchhHHhhcC
Confidence            467999999 8999999999999 9999999655

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=95.40  E-value=0.083  Score=37.02  Aligned_cols=55  Identities=15%  Similarity=0.189  Sum_probs=36.8

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+||+.|+.....|++          .++.+..+.++.+.+.                   ..++.+..+-..+|
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~----------~gi~~~~~di~~~~~~-------------------~~el~~~~g~~~vP   53 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE----------KGLPYVEINIDIFPER-------------------KAELEERTGSSVVP   53 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHHHHHhCCCCcC
Confidence            346788999999988777664          3345556677654321                   34566666778889


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      .+++
T Consensus        54 ~v~i   57 (73)
T cd03027          54 QIFF   57 (73)
T ss_pred             EEEE
Confidence            8843

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>cd02337 ZZ_CBP Zinc finger, ZZ type

Probab=95.39  E-value=0.0055  Score=37.75  Aligned_cols=30  Identities=37%  Similarity=0.845  Sum_probs=25.0

Q ss_pred             eeecCcCCCCcceEEEcCCCC-CCCCcccccC
Q 018266          323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVEG  353 (358)
Q Consensus       323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~~  353 (358)
                      |.|+.|... .|.+|+|..|+ |||...|-..
T Consensus         1 y~C~~C~~~-~~~r~~C~~C~dfDLC~~C~~~   31 (41)
T cd02337           1 YTCNECKHH-VETRWHCTVCEDYDLCITCYNT   31 (41)
T ss_pred             CcCCCCCCc-CCCceECCCCcchhhHHHHhCC
Confidence            569999884 46999999997 9999999544

Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.

>PHA03050 glutaredoxin; Provisional

Probab=95.37  E-value=0.031  Score=42.73  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=38.3

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+|||+|......|.+..-+.     ..++++-|.-..+..+                  ....+.+.-|-+.+|
T Consensus        15 V~vys~~~CPyC~~ak~~L~~~~i~~-----~~~~~i~i~~~~~~~~------------------~~~~l~~~tG~~tVP   71 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNKFSFKR-----GAYEIVDIKEFKPENE------------------LRDYFEQITGGRTVP   71 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHHcCCCc-----CCcEEEECCCCCCCHH------------------HHHHHHHHcCCCCcC
Confidence            55689999999998777765542111     1344444432111111                  135666677888999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      +++ |  +|+.+
T Consensus        72 ~If-I--~g~~i   80 (108)
T PHA03050         72 RIF-F--GKTSI   80 (108)
T ss_pred             EEE-E--CCEEE
Confidence            985 4  35554

>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like

Probab=95.34  E-value=0.099  Score=44.42  Aligned_cols=110  Identities=19%  Similarity=0.385  Sum_probs=75.7

Q ss_pred             cCCceecCCCceeeeccc-CCcEEEEE--E-----eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          151 GRDYVLSRDHRKITVSEL-AGKTIGLY--F-----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       151 ~p~f~l~~~g~~~~l~~~-~~k~vlv~--F-----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      ..++.++....+++|.++ .|+..||.  |     |...|+-|...+..++.....+.+   .++.++.|+-. ..+++.
T Consensus        46 ~~~Y~F~g~~G~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~---rd~tfa~vSra-P~~~i~  121 (211)
T PF05988_consen   46 DKDYVFDGPDGPVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHA---RDTTFAVVSRA-PLEKIE  121 (211)
T ss_pred             CCCeEEeCCCCcccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHh---CCceEEEEeCC-CHHHHH
Confidence            345666444445888886 45543332  2     246799999999999777777775   77888888755 567788


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCC-----CceeeEEEECCCCcEE
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTI  265 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~  265 (358)
                      .+.+.|+|. +|..+.....+...|++     ...|.+-+|=++|--|
T Consensus       122 afk~rmGW~-~pw~Ss~gs~Fn~D~~~~~~~~~~~~g~svF~Rdg~~V  168 (211)
T PF05988_consen  122 AFKRRMGWT-FPWYSSYGSDFNYDFGVSFDEGGEMPGLSVFLRDGGRV  168 (211)
T ss_pred             HHHHhcCCC-ceEEEcCCCcccccccceeccCCCceeEEEEEEcCCEE
Confidence            888899997 88876666777778887     4667665554554433

>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals

Probab=95.20  E-value=0.012  Score=45.60  Aligned_cols=67  Identities=10%  Similarity=0.185  Sum_probs=45.0

Q ss_pred             eecccCCCCEEEEEEeCC----CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccce
Q 018266           35 VPLSSCGGKTICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIG  110 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~----wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  110 (358)
                      +..+.-++|+++|+|+++    ||..|+..... .++.+-++++     ++++.+|.+...                +.+
T Consensus        10 l~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~~-----fv~w~~dv~~~e----------------g~~   67 (116)
T cd02991          10 LNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINTR-----MLFWACSVAKPE----------------GYR   67 (116)
T ss_pred             HHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHcC-----EEEEEEecCChH----------------HHH
Confidence            555667899999999999    88888765421 2344444443     566666543221                357


Q ss_pred             eeeccccCCCCcc
Q 018266          111 LIEDYGADAYPFT  123 (358)
Q Consensus       111 l~~~~gi~~~P~~  123 (358)
                      ++..+++.+||+.
T Consensus        68 la~~l~~~~~P~~   80 (116)
T cd02991          68 VSQALRERTYPFL   80 (116)
T ss_pred             HHHHhCCCCCCEE
Confidence            8889999999964

ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=95.17  E-value=0.086  Score=36.80  Aligned_cols=59  Identities=22%  Similarity=0.348  Sum_probs=37.5

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+|||+|.+....|.+          .++.+..+.++.+..                    ...+.+..|...+|
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~----------~~i~~~~~~v~~~~~--------------------~~~~~~~~g~~~vP   52 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE----------NGISYEEIPLGKDIT--------------------GRSLRAVTGAMTVP   52 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH----------cCCCcEEEECCCChh--------------------HHHHHHHhCCCCcC
Confidence            456888999999988776653          234445556654421                    23455556889999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .+ ++  +|+.+
T Consensus        53 ~i-fi--~g~~i   61 (72)
T cd03029          53 QV-FI--DGELI   61 (72)
T ss_pred             eE-EE--CCEEE
Confidence            97 45  34443

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=95.15  E-value=0.033  Score=39.87  Aligned_cols=36  Identities=25%  Similarity=0.400  Sum_probs=26.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|+++|||+|+...+.|.++..       +++++-++.+.+
T Consensus         2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~   37 (82)
T cd03419           2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHED   37 (82)
T ss_pred             EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCC
Confidence            478899999999998888776433       255666665544

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>KOG3414 consensus Component of the U4/U6

Probab=95.11  E-value=0.12  Score=39.80  Aligned_cols=63  Identities=17%  Similarity=0.481  Sum_probs=50.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ..|.|+|-|.-.|-|.|.++-..|.+++....+    =..|..+.+|.                       .+.+.+.|+
T Consensus        22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn----fa~Iylvdide-----------------------V~~~~~~~~   74 (142)
T KOG3414|consen   22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN----FAVIYLVDIDE-----------------------VPDFVKMYE   74 (142)
T ss_pred             cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh----ceEEEEEecch-----------------------hhhhhhhhc
Confidence            358999999999999999999999999998863    23444455564                       367888999


Q ss_pred             CCceeeEEEE
Q 018266          249 IKGIPALVLI  258 (358)
Q Consensus       249 v~~~P~~~li  258 (358)
                      +...|++++|
T Consensus        75 l~~p~tvmfF   84 (142)
T KOG3414|consen   75 LYDPPTVMFF   84 (142)
T ss_pred             ccCCceEEEE
Confidence            9999998877

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=95.11  E-value=0.066  Score=37.00  Aligned_cols=36  Identities=22%  Similarity=0.371  Sum_probs=25.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++||++|..+.+.+.+       .+  +++..++++.+..
T Consensus         2 v~l~~~~~c~~c~~~~~~l~~-------~~--i~~~~~~i~~~~~   37 (73)
T cd02976           2 VTVYTKPDCPYCKATKRFLDE-------RG--IPFEEVDVDEDPE   37 (73)
T ss_pred             EEEEeCCCChhHHHHHHHHHH-------CC--CCeEEEeCCCCHH
Confidence            478899999999998776654       23  5566677775543

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=95.09  E-value=0.066  Score=35.89  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=26.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ++.|+.+||++|++....|       ++.+  +.+..++++.++
T Consensus         1 V~vy~~~~C~~C~~~~~~L-------~~~~--i~y~~~dv~~~~   35 (60)
T PF00462_consen    1 VVVYTKPGCPYCKKAKEFL-------DEKG--IPYEEVDVDEDE   35 (60)
T ss_dssp             EEEEESTTSHHHHHHHHHH-------HHTT--BEEEEEEGGGSH
T ss_pred             cEEEEcCCCcCHHHHHHHH-------HHcC--CeeeEcccccch
Confidence            4678999999999977766       3344  678888888764

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK10638 glutaredoxin 3; Provisional

Probab=95.02  E-value=0.14  Score=36.90  Aligned_cols=60  Identities=17%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|..+||++|......|.+.          ++.+..+.++.+.+                   ....+.+..+...+|
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~~----------gi~y~~~dv~~~~~-------------------~~~~l~~~~g~~~vP   54 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNSK----------GVSFQEIPIDGDAA-------------------KREEMIKRSGRTTVP   54 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            4467789999999887777642          23344456665431                   124555666888999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      ++++   +|+.+
T Consensus        55 ~i~~---~g~~i   63 (83)
T PRK10638         55 QIFI---DAQHI   63 (83)
T ss_pred             EEEE---CCEEE
Confidence            7744   46655

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=94.95  E-value=0.11  Score=38.18  Aligned_cols=65  Identities=18%  Similarity=0.269  Sum_probs=39.4

Q ss_pred             CCcEEEEEEec----cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          169 AGKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       169 ~~k~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      ++++|+|+--+    +|||+|......|.+.          ++.+-.+.++.+.+                   ....+.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~----------~i~y~~idv~~~~~-------------------~~~~l~   56 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL----------GVDFGTFDILEDEE-------------------VRQGLK   56 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc----------CCCeEEEEcCCCHH-------------------HHHHHH
Confidence            44566665433    7999999877766553          23344455554421                   135666


Q ss_pred             HHcCCCceeeEEEECCCCcEE
Q 018266          245 RIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~  265 (358)
                      +..|...+|.++ +  +|+.+
T Consensus        57 ~~~g~~tvP~vf-i--~g~~i   74 (90)
T cd03028          57 EYSNWPTFPQLY-V--NGELV   74 (90)
T ss_pred             HHhCCCCCCEEE-E--CCEEE
Confidence            667888999974 4  45543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.88  E-value=0.11  Score=42.42  Aligned_cols=53  Identities=17%  Similarity=0.289  Sum_probs=39.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..+=.-..+++++.|+...||||..+.+.+.++.+++-+.| .+.+++..+...
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~   57 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLD   57 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSS
T ss_pred             CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEcccc
Confidence            33444567999999999999999999999999988883333 378888876543

...

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=94.79  E-value=0.062  Score=43.38  Aligned_cols=41  Identities=20%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      .++++++.|+.++||+|..+.+.+.++..++.     ++.+++..+
T Consensus         4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~-----~~~~~~~~~   44 (154)
T cd03023           4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP-----DVRVVFKEF   44 (154)
T ss_pred             CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC-----CceEEEEeC
Confidence            36889999999999999999999998877653     345555443

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.77  E-value=0.074  Score=36.86  Aligned_cols=70  Identities=24%  Similarity=0.395  Sum_probs=44.9

Q ss_pred             EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh---cCCccccccCchhHHHHHHHcCCCc
Q 018266          175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS---IMPWLAIPYEDRARQDLCRIFNIKG  251 (358)
Q Consensus       175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~~  251 (358)
                      +.|++..||.|......|.++.-        +++  +|.+-.+-..+++++.   +++          .-.-.+..|--+
T Consensus         5 ~lfgsn~Cpdca~a~eyl~rl~v--------~yd--~VeIt~Sm~NlKrFl~lRDs~~----------~Fd~vk~~gyiG   64 (85)
T COG4545           5 KLFGSNLCPDCAPAVEYLERLNV--------DYD--FVEITESMANLKRFLHLRDSRP----------EFDEVKSNGYIG   64 (85)
T ss_pred             eeeccccCcchHHHHHHHHHcCC--------Cce--eeehhhhhhhHHHHHhhhccch----------hHHhhhhcCccc
Confidence            46899999999887777765422        223  4455555555555554   333          123346678889


Q ss_pred             eeeEEEECCCCcEEe
Q 018266          252 IPALVLIGPDGKTIS  266 (358)
Q Consensus       252 ~P~~~lid~~G~v~~  266 (358)
                      +|.+.+  .+|+++.
T Consensus        65 IPall~--~d~~vVl   77 (85)
T COG4545          65 IPALLT--DDGKVVL   77 (85)
T ss_pred             ceEEEe--CCCcEEE
Confidence            999865  6787764

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=94.70  E-value=0.13  Score=36.00  Aligned_cols=53  Identities=15%  Similarity=0.322  Sum_probs=34.4

Q ss_pred             EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018266          175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  254 (358)
Q Consensus       175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~  254 (358)
                      ..|..++|++|+.....|.+          .++.+-.+.++.+.+.                   ...+ +..|...+|.
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~----------~~i~~~~~di~~~~~~-------------------~~~~-~~~g~~~vP~   51 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE----------HGIAFEEINIDEQPEA-------------------IDYV-KAQGFRQVPV   51 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCcccCE
Confidence            46788999999988877753          3345556666655321                   1223 3358889999


Q ss_pred             EEE
Q 018266          255 LVL  257 (358)
Q Consensus       255 ~~l  257 (358)
                      +++
T Consensus        52 v~~   54 (72)
T TIGR02194        52 IVA   54 (72)
T ss_pred             EEE
Confidence            754

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.68  E-value=0.064  Score=45.80  Aligned_cols=32  Identities=19%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHH
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ   66 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~   66 (358)
                      +....-.++..++.|+-+.||+|+++.+.+.+
T Consensus        70 i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~  101 (197)
T cd03020          70 IVYGKGNGKRVVYVFTDPDCPYCRKLEKELKP  101 (197)
T ss_pred             eEEcCCCCCEEEEEEECCCCccHHHHHHHHhh
Confidence            44444457999999999999999999998876

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=94.66  E-value=0.17  Score=36.42  Aligned_cols=54  Identities=15%  Similarity=0.353  Sum_probs=35.4

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|..+||++|......|.+          .++.+-.+.++.+.+.                   ...+ +..|...+|
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~~----------~gI~~~~idi~~~~~~-------------------~~~~-~~~g~~~vP   52 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAMES----------RGFDFEMINVDRVPEA-------------------AETL-RAQGFRQLP   52 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHHH----------CCCceEEEECCCCHHH-------------------HHHH-HHcCCCCcC
Confidence            456889999999987766633          4456666777755321                   1222 335788999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      ++++
T Consensus        53 vv~i   56 (81)
T PRK10329         53 VVIA   56 (81)
T ss_pred             EEEE
Confidence            9864

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=94.63  E-value=0.16  Score=38.00  Aligned_cols=64  Identities=20%  Similarity=0.227  Sum_probs=38.4

Q ss_pred             CcEEEEEEe----ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          170 GKTIGLYFG----AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       170 ~k~vlv~F~----a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .+.|+|+-.    .+|||+|......|.+.          ++.+..+.++.+.+                   ....+.+
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~----------~i~~~~~di~~~~~-------------------~~~~l~~   61 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKAC----------GVPFAYVNVLEDPE-------------------IRQGIKE   61 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHHc----------CCCEEEEECCCCHH-------------------HHHHHHH
Confidence            355666544    38999999877766542          23344556554431                   1245556


Q ss_pred             HcCCCceeeEEEECCCCcEE
Q 018266          246 IFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~  265 (358)
                      ..|...+|.++ +  +|+.+
T Consensus        62 ~tg~~tvP~vf-i--~g~~i   78 (97)
T TIGR00365        62 YSNWPTIPQLY-V--KGEFV   78 (97)
T ss_pred             HhCCCCCCEEE-E--CCEEE
Confidence            66778899886 4  35543

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=94.59  E-value=0.12  Score=42.16  Aligned_cols=51  Identities=16%  Similarity=0.215  Sum_probs=39.7

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      ..+.+-.++++|+.|+...||+|..+.+.+.++.+++-  ...++.+++..+.
T Consensus         5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i--~~~~v~~~~~~~~   55 (162)
T PF13462_consen    5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYI--DPGKVKFVFRPVP   55 (162)
T ss_dssp             EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT--TTTTEEEEEEESS
T ss_pred             CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhcc--CCCceEEEEEEcc
Confidence            34455567899999999999999999999999999982  1267888888773

...

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=0.11  Score=41.77  Aligned_cols=48  Identities=23%  Similarity=0.462  Sum_probs=36.9

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCC
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..-++|+.++.|-.+.|+.|.++...+   .++.+-+..+   +.++.++....
T Consensus        38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~h---f~~~~l~i~~s   88 (182)
T COG2143          38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEH---FSAYYLNISYS   88 (182)
T ss_pred             cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhC---eEEEEEEeccC
Confidence            335689999999999999999988766   4466666666   77777776543

>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=94.26  E-value=0.022  Score=48.78  Aligned_cols=69  Identities=22%  Similarity=0.414  Sum_probs=50.8

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      --.++.|+++|||.|....|.|.+++.--.+   -++.|-.|.+..+                       ..+.-+|-+.
T Consensus        40 gewmi~~~ap~~psc~~~~~~~~~~a~~s~d---L~v~va~VDvt~n-----------------------pgLsGRF~vt   93 (248)
T KOG0913|consen   40 GEWMIEFGAPWCPSCSDLIPHLENFATVSLD---LGVKVAKVDVTTN-----------------------PGLSGRFLVT   93 (248)
T ss_pred             hHHHHHhcCCCCccccchHHHHhccCCccCC---CceeEEEEEEEec-----------------------cccceeeEEE
Confidence            3577899999999999999999887654332   4555555544332                       3556678889


Q ss_pred             ceeeEEEECCCCcEEe
Q 018266          251 GIPALVLIGPDGKTIS  266 (358)
Q Consensus       251 ~~P~~~lid~~G~v~~  266 (358)
                      ..|++|-+ ++|..+.
T Consensus        94 aLptIYHv-kDGeFrr  108 (248)
T KOG0913|consen   94 ALPTIYHV-KDGEFRR  108 (248)
T ss_pred             ecceEEEe-ecccccc
Confidence            99999999 8888753

>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.11  E-value=0.072  Score=44.39  Aligned_cols=32  Identities=28%  Similarity=0.441  Sum_probs=29.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHh
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLR   72 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~   72 (358)
                      .+++.+++|+-+.||||+.+.+.+.++.+++.
T Consensus        14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~   45 (178)
T cd03019          14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLP   45 (178)
T ss_pred             CCCcEEEEEECCCCcchhhhhHHHHHHHHhCC
Confidence            68999999999999999999999999888773

It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=93.84  E-value=0.079  Score=37.86  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=26.7

Q ss_pred             CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +.-++.|+.+||++|++....|++       .|  +.+..++++.+.
T Consensus         7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~g--i~y~~idi~~~~   44 (79)
T TIGR02190         7 PESVVVFTKPGCPFCAKAKATLKE-------KG--YDFEEIPLGNDA   44 (79)
T ss_pred             CCCEEEEECCCCHhHHHHHHHHHH-------cC--CCcEEEECCCCh
Confidence            444678999999999998776653       34  555567776553

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=93.73  E-value=0.82  Score=40.57  Aligned_cols=132  Identities=11%  Similarity=0.095  Sum_probs=72.1

Q ss_pred             cCCcee-cCCCceeeecc-cCCcEEEEEEeccCCcccHhhHHHH-HHHHHHhhcccCCceEEEEEeCCCCHH-HHHH-hh
Q 018266          151 GRDYVL-SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQL-IEVYNELKTTANHCFEVVLVSTDRDHK-EFDL-NH  225 (358)
Q Consensus       151 ~p~f~l-~~~g~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~l-~~l~~~~~~~~~~~~~vv~v~~d~~~~-~~~~-~~  225 (358)
                      -|++.. +++|+.+++.+ ++||+.||..+++-  .-..+...+ .....+|.......+++|-|++..+.- .+.. .+
T Consensus       101 FP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~--~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l~~~~  178 (252)
T PF05176_consen  101 FPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSA--WGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWLVKLF  178 (252)
T ss_pred             CCCCccccCCCCCcccccccCCceEEEEEeehH--HHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHHHHHH
Confidence            456655 67777666544 57887666554431  122222222 234445543122379999999876541 2221 11


Q ss_pred             h-c----CC---ccccccCch--hHHHHHHHcCCC--ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHH
Q 018266          226 S-I----MP---WLAIPYEDR--ARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET  293 (358)
Q Consensus       226 ~-~----~~---~~~~~~~~~--~~~~l~~~~~v~--~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~  293 (358)
                      . +    .|   |..+-+..+  ....+.+.+++.  -+..+||+|++|+|+..+       .|    +.+++.++.|.+
T Consensus       179 ~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~GYvyLVD~~grIRWag-------sG----~At~~E~~~L~k  247 (252)
T PF05176_consen  179 MGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYVGYVYLVDPNGRIRWAG-------SG----PATPEELESLWK  247 (252)
T ss_pred             hhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCcCeEEEECCCCeEEeCc-------cC----CCCHHHHHHHHH
Confidence            1 1    11   211111121  256788888885  467899999999999773       22    345565666654


Q ss_pred             HH
Q 018266          294 AL  295 (358)
Q Consensus       294 ~l  295 (358)
                      .+
T Consensus       248 ~~  249 (252)
T PF05176_consen  248 CV  249 (252)
T ss_pred             HH
Confidence            43

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=93.68  E-value=0.15  Score=36.18  Aligned_cols=51  Identities=24%  Similarity=0.361  Sum_probs=33.7

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      |.+++++|++|..+...+.++...+.     +++-.++. .+.+                   ++ .+||+...|+.
T Consensus         3 I~v~~~~C~~C~~~~~~~~~~~~~~~-----i~~ei~~~-~~~~-------------------~~-~~ygv~~vPal   53 (76)
T PF13192_consen    3 IKVFSPGCPYCPELVQLLKEAAEELG-----IEVEIIDI-EDFE-------------------EI-EKYGVMSVPAL   53 (76)
T ss_dssp             EEEECSSCTTHHHHHHHHHHHHHHTT-----EEEEEEET-TTHH-------------------HH-HHTT-SSSSEE
T ss_pred             EEEeCCCCCCcHHHHHHHHHHHHhcC-----CeEEEEEc-cCHH-------------------HH-HHcCCCCCCEE
Confidence            34468889999999998888877763     34444444 2332                   23 77888888853

...

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=93.47  E-value=0.19  Score=34.42  Aligned_cols=36  Identities=31%  Similarity=0.417  Sum_probs=26.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++||++|+...+.|.+.       +  +.+..++++.+.+
T Consensus         2 v~ly~~~~Cp~C~~~~~~L~~~-------~--i~~~~~di~~~~~   37 (72)
T cd02066           2 VVVFSKSTCPYCKRAKRLLESL-------G--IEFEEIDILEDGE   37 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHHc-------C--CcEEEEECCCCHH
Confidence            4678899999999988877653       2  4566777776553

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]

Probab=93.03  E-value=0.15  Score=42.60  Aligned_cols=70  Identities=19%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +..-|++.||-+.-..|+.+-..|..|++.+-.     ..++-|+...                       ..-+..+++
T Consensus        83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-----TrFikvnae~-----------------------~PFlv~kL~  134 (211)
T KOG1672|consen   83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-----TRFIKVNAEK-----------------------APFLVTKLN  134 (211)
T ss_pred             cCceEEEEEEcCCCcceehHHHHHHHHHHhccc-----ceEEEEeccc-----------------------Cceeeeeee
Confidence            446789999999988999999999999988743     3455554443                       256788999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+-+|++.++ .+|+.+.+
T Consensus       135 IkVLP~v~l~-k~g~~~D~  152 (211)
T KOG1672|consen  135 IKVLPTVALF-KNGKTVDY  152 (211)
T ss_pred             eeEeeeEEEE-EcCEEEEE
Confidence            9999999999 88876554

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=92.82  E-value=0.53  Score=33.72  Aligned_cols=20  Identities=20%  Similarity=0.325  Sum_probs=16.1

Q ss_pred             EEEEeccCCcccHhhHHHHH
Q 018266          174 GLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~  193 (358)
                      +..|..++||+|......|.
T Consensus         3 v~iyt~~~CPyC~~ak~~L~   22 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD   22 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH
Confidence            45688899999998777665

>PRK10329 glutaredoxin-like protein; Provisional

Probab=92.49  E-value=0.23  Score=35.72  Aligned_cols=37  Identities=19%  Similarity=0.431  Sum_probs=26.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      +..|..+||++|.+....|+       +.|  +.+..++++.+.+.
T Consensus         3 v~lYt~~~Cp~C~~ak~~L~-------~~g--I~~~~idi~~~~~~   39 (81)
T PRK10329          3 ITIYTRNDCVQCHATKRAME-------SRG--FDFEMINVDRVPEA   39 (81)
T ss_pred             EEEEeCCCCHhHHHHHHHHH-------HCC--CceEEEECCCCHHH
Confidence            45788999999999776664       345  66777788766543

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=92.49  E-value=0.097  Score=34.17  Aligned_cols=35  Identities=26%  Similarity=0.558  Sum_probs=28.4

Q ss_pred             CCceeecCcCCCC---cceEEEcCCCCCCCCcccccCc
Q 018266          320 AKAYVCDCCKMRG---RFWAFSCDVCNYDLHPKCVEGI  354 (358)
Q Consensus       320 ~~~~~C~~C~e~g---~~~~~~~~~~~~~~~~~~~~~~  354 (358)
                      ..+..|+.|++..   ..-.|+|..|++-+|.+|....
T Consensus         9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~   46 (53)
T PF00130_consen    9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV   46 (53)
T ss_dssp             SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred             CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence            5677899999976   6779999999999999997654

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=92.08  E-value=0.5  Score=32.95  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=25.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+.+||++|++....|++       .+  +.+..++++.+..
T Consensus         3 v~ly~~~~C~~C~ka~~~L~~-------~g--i~~~~~di~~~~~   38 (73)
T cd03027           3 VTIYSRLGCEDCTAVRLFLRE-------KG--LPYVEINIDIFPE   38 (73)
T ss_pred             EEEEecCCChhHHHHHHHHHH-------CC--CceEEEECCCCHH
Confidence            456888999999997766653       44  5566777776554

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=91.62  E-value=0.35  Score=35.14  Aligned_cols=39  Identities=15%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|+.+|||+|.+....|+++..+..    .+.+..++++.+
T Consensus         2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~   40 (86)
T TIGR02183         2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAE   40 (86)
T ss_pred             EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCC
Confidence            567889999999998887776543221    255666666643

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>cd00029 C1 Protein kinase C conserved region 1 (C1)

Probab=91.58  E-value=0.17  Score=32.38  Aligned_cols=35  Identities=26%  Similarity=0.595  Sum_probs=29.5

Q ss_pred             CceeecCcCCCCcc---eEEEcCCCCCCCCcccccCcc
Q 018266          321 KAYVCDCCKMRGRF---WAFSCDVCNYDLHPKCVEGIN  355 (358)
Q Consensus       321 ~~~~C~~C~e~g~~---~~~~~~~~~~~~~~~~~~~~~  355 (358)
                      .+..|..|.+...+   ..|+|..|++-.|++|+....
T Consensus        10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~   47 (50)
T cd00029          10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP   47 (50)
T ss_pred             CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence            45679999997665   899999999999999987643

Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=91.58  E-value=0.29  Score=36.72  Aligned_cols=34  Identities=21%  Similarity=0.424  Sum_probs=22.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|..+|||+|.+....|.+       .+  +.+..+++|.+
T Consensus        10 Vvvysk~~Cp~C~~ak~~L~~-------~~--i~~~~vdid~~   43 (99)
T TIGR02189        10 VVIFSRSSCCMCHVVKRLLLT-------LG--VNPAVHEIDKE   43 (99)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCCEEEEcCCC
Confidence            467889999999997765543       34  33445666644

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=91.55  E-value=1.1  Score=35.88  Aligned_cols=116  Identities=15%  Similarity=0.263  Sum_probs=70.0

Q ss_pred             hhhccCCcee-cC--C----C-ceeeecc-cCCcEEEE-EEeccCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEeC
Q 018266          147 LAIEGRDYVL-SR--D----H-RKITVSE-LAGKTIGL-YFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVST  214 (358)
Q Consensus       147 ~~~~~p~f~l-~~--~----g-~~~~l~~-~~~k~vlv-~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~~  214 (358)
                      +|++.|..++ ..  +    | ..++..+ ++||.|+| -.-+...|.|.. .+|.+.+++++++.   .++ +|+.|++
T Consensus         5 vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~---kGVD~I~cVSV   81 (165)
T COG0678           5 VGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKA---KGVDEIYCVSV   81 (165)
T ss_pred             cCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHH---cCCceEEEEEe
Confidence            4666776665 22  1    1 1222233 35665544 344556777866 79999999999986   333 4566777


Q ss_pred             CCCH--HHHHHhhhcCCccccccCchhHHHHHHHcC-----------CCceeeEEEECCCCcEEecC
Q 018266          215 DRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFN-----------IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       215 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------v~~~P~~~lid~~G~v~~~~  268 (358)
                      ++.-  ..|.+......  ++.+..|.+.++.+.+|           +++.....++ .||.|..-.
T Consensus        82 ND~FVm~AWak~~g~~~--~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~  145 (165)
T COG0678          82 NDAFVMNAWAKSQGGEG--NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLF  145 (165)
T ss_pred             CcHHHHHHHHHhcCCCc--cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEE
Confidence            6432  45555554432  45555555677777654           4566667777 888887664

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=91.53  E-value=0.29  Score=35.62  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=28.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +..|+.+.||+|..+.|.+.++......   ++++....+.
T Consensus         1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFP   38 (98)
T ss_pred             CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccc
Confidence            3689999999999999999988743333   2666666544

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=91.52  E-value=0.87  Score=34.43  Aligned_cols=65  Identities=25%  Similarity=0.448  Sum_probs=37.0

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      ++| |.|..+||++|......|..    +.    ....|+-+.-+.+..+++                  ..+.+.-+-+
T Consensus        14 ~~V-VifSKs~C~~c~~~k~ll~~----~~----v~~~vvELD~~~~g~eiq------------------~~l~~~tg~~   66 (104)
T KOG1752|consen   14 NPV-VIFSKSSCPYCHRAKELLSD----LG----VNPKVVELDEDEDGSEIQ------------------KALKKLTGQR   66 (104)
T ss_pred             CCE-EEEECCcCchHHHHHHHHHh----CC----CCCEEEEccCCCCcHHHH------------------HHHHHhcCCC
Confidence            344 45889999999984444433    33    344455444443332222                  3344444566


Q ss_pred             ceeeEEEECCCCcEE
Q 018266          251 GIPALVLIGPDGKTI  265 (358)
Q Consensus       251 ~~P~~~lid~~G~v~  265 (358)
                      .+|.+|+   +|+-+
T Consensus        67 tvP~vFI---~Gk~i   78 (104)
T KOG1752|consen   67 TVPNVFI---GGKFI   78 (104)
T ss_pred             CCCEEEE---CCEEE
Confidence            8898876   56665

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=91.47  E-value=0.88  Score=45.52  Aligned_cols=69  Identities=19%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      .+++.+.++.|+...|..|......|+++.. +.    +++++.....+.                       ...++++
T Consensus       363 ~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s----~~i~~~~~~~~~-----------------------~~~~~~~  414 (555)
T TIGR03143       363 RLENPVTLLLFLDGSNEKSAELQSFLGEFAS-LS----EKLNSEAVNRGE-----------------------EPESETL  414 (555)
T ss_pred             hcCCCEEEEEEECCCchhhHHHHHHHHHHHh-cC----CcEEEEEecccc-----------------------chhhHhh
Confidence            4566778889998888889877776666653 22    556665554433                       3678889


Q ss_pred             cCCCceeeEEEECCCCc
Q 018266          247 FNIKGIPALVLIGPDGK  263 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~  263 (358)
                      |++...|++.+++.+|+
T Consensus       415 ~~v~~~P~~~i~~~~~~  431 (555)
T TIGR03143       415 PKITKLPTVALLDDDGN  431 (555)
T ss_pred             cCCCcCCEEEEEeCCCc
Confidence            99999999999976654

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]

Probab=91.38  E-value=0.71  Score=37.89  Aligned_cols=67  Identities=22%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             ccccCcccccCCC-CceecccCCCCEEEEEEe--CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           20 LASEGVEFLLSRQ-GKVPLSSCGGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        20 l~~~~~~~l~~~~-g~v~l~~~~gk~vlv~F~--a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      |....++|-.+++ |.+.+-++-|.-+.|.|.  |..-|.|....-.+++++-++.+++  +.++..+||.-
T Consensus         8 lgd~~PNfea~Tt~g~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRn--vKlialS~d~v   77 (224)
T KOG0854|consen    8 LGDTVPNFEADTTVGKIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRN--VKLIALSVDDV   77 (224)
T ss_pred             ccCcCCCccccccccceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcC--ceEEEeehhhH
Confidence            3445567744444 449999999999999999  7788999999999999999999988  89999999953

>PRK10824 glutaredoxin-4; Provisional

Probab=91.09  E-value=0.26  Score=38.05  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=37.6

Q ss_pred             CcEEEEEEec----cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          170 GKTIGLYFGA----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       170 ~k~vlv~F~a----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ...|+|+--+    +|||+|.+....|.++    .    ..+.+  +.++.+.+ .                  ...+.+
T Consensus        14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~----~----i~~~~--idi~~d~~-~------------------~~~l~~   64 (115)
T PRK10824         14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC----G----ERFAY--VDILQNPD-I------------------RAELPK   64 (115)
T ss_pred             cCCEEEEECCCCCCCCCchHHHHHHHHHHc----C----CCceE--EEecCCHH-H------------------HHHHHH
Confidence            4556665543    6999999887776554    2    22333  44454431 1                  234555


Q ss_pred             HcCCCceeeEEEECCCCcEE
Q 018266          246 IFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~  265 (358)
                      .-|...+|.+++   +|+-+
T Consensus        65 ~sg~~TVPQIFI---~G~~I   81 (115)
T PRK10824         65 YANWPTFPQLWV---DGELV   81 (115)
T ss_pred             HhCCCCCCeEEE---CCEEE
Confidence            557788888775   55554

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.81  E-value=0.43  Score=40.59  Aligned_cols=93  Identities=24%  Similarity=0.441  Sum_probs=62.8

Q ss_pred             CCceecCCCceeeeccc-CCcEEEEE---E----eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          152 RDYVLSRDHRKITVSEL-AGKTIGLY---F----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       152 p~f~l~~~g~~~~l~~~-~~k~vlv~---F----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      .++.++....+.+|.+| .|+..||.   +    |...|+-|...+..+.-....+..   .++.+++|+-- ..+++..
T Consensus        53 K~Y~Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~---~dv~lv~VsRA-Pl~~l~~  128 (247)
T COG4312          53 KDYVFETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEH---HDVTLVAVSRA-PLEELVA  128 (247)
T ss_pred             ceeEeecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhh---cCceEEEEecC-cHHHHHH
Confidence            34566444446788776 45544332   2    344799999999988777777765   77888888654 4567777


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCC
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +-+.|+|. +|..+.....+...|++
T Consensus       129 ~k~rmGW~-f~w~Ss~~s~Fn~Df~v  153 (247)
T COG4312         129 YKRRMGWQ-FPWVSSTDSDFNRDFQV  153 (247)
T ss_pred             HHHhcCCc-ceeEeccCccccccccc
Confidence            88888887 77766555666666655

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=90.65  E-value=0.89  Score=31.67  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=25.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+.+||++|.+....|++       .+  +.+..++++.+.+
T Consensus         2 i~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~i~i~~~~~   37 (75)
T cd03418           2 VEIYTKPNCPYCVRAKALLDK-------KG--VDYEEIDVDGDPA   37 (75)
T ss_pred             EEEEeCCCChHHHHHHHHHHH-------CC--CcEEEEECCCCHH
Confidence            467889999999997776654       34  5566677776543

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=90.62  E-value=0.6  Score=33.05  Aligned_cols=36  Identities=19%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      +.|+.+|||+|.+....|++       .+  +.+..++++.+...
T Consensus         2 ~ly~~~~Cp~C~~a~~~L~~-------~~--i~~~~~di~~~~~~   37 (79)
T TIGR02181         2 TIYTKPYCPYCTRAKALLSS-------KG--VTFTEIRVDGDPAL   37 (79)
T ss_pred             EEEecCCChhHHHHHHHHHH-------cC--CCcEEEEecCCHHH
Confidence            56889999999998877764       33  44555666665543

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=90.62  E-value=1.4  Score=34.46  Aligned_cols=62  Identities=21%  Similarity=0.482  Sum_probs=45.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ..|.|+|-|...|-+.|.++-..|.+++++.+    .-..|..+.++.-                       +.+.+.|.
T Consensus        19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~----~~a~IY~vDi~~V-----------------------pdfn~~ye   71 (133)
T PF02966_consen   19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVK----NFAVIYLVDIDEV-----------------------PDFNQMYE   71 (133)
T ss_dssp             SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTT-----------------------HCCHHHTT
T ss_pred             CceEEEEEeCCCCCccHHHHHHHHHHHHHHhh----cceEEEEEEcccc-----------------------hhhhcccc
Confidence            46899999999999999999999999999886    3345555666653                       45677888


Q ss_pred             CCceeeEEEE
Q 018266          249 IKGIPALVLI  258 (358)
Q Consensus       249 v~~~P~~~li  258 (358)
                      +. .|..++|
T Consensus        72 l~-dP~tvmF   80 (133)
T PF02966_consen   72 LY-DPCTVMF   80 (133)
T ss_dssp             S--SSEEEEE
T ss_pred             cC-CCeEEEE
Confidence            88 6754333

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=90.18  E-value=0.32  Score=41.83  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=26.9

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHh
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLR   72 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~   72 (358)
                      ..|++-+++|+...||||..+.|.+   ..+.+.+.
T Consensus        35 ~~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~   70 (207)
T PRK10954         35 VAGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP   70 (207)
T ss_pred             CCCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC
Confidence            4688899999999999999999876   55555553

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=90.08  E-value=0.56  Score=33.65  Aligned_cols=56  Identities=29%  Similarity=0.373  Sum_probs=42.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+.|+.|......|.++...      ..+.+..|.++.+                       ..+.++|+. .+|
T Consensus         2 l~l~~k~~C~LC~~a~~~L~~~~~~------~~~~l~~vDI~~d-----------------------~~l~~~Y~~-~IP   51 (81)
T PF05768_consen    2 LTLYTKPGCHLCDEAKEILEEVAAE------FPFELEEVDIDED-----------------------PELFEKYGY-RIP   51 (81)
T ss_dssp             EEEEE-SSSHHHHHHHHHHHHCCTT------STCEEEEEETTTT-----------------------HHHHHHSCT-STS
T ss_pred             EEEEcCCCCChHHHHHHHHHHHHhh------cCceEEEEECCCC-----------------------HHHHHHhcC-CCC
Confidence            6788999999999888777664332      4578989999865                       568889995 799


Q ss_pred             eEEEEC
Q 018266          254 ALVLIG  259 (358)
Q Consensus       254 ~~~lid  259 (358)
                      .+.+-+
T Consensus        52 Vl~~~~   57 (81)
T PF05768_consen   52 VLHIDG   57 (81)
T ss_dssp             EEEETT
T ss_pred             EEEEcC
Confidence            976653

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=90.04  E-value=0.79  Score=31.87  Aligned_cols=38  Identities=24%  Similarity=0.441  Sum_probs=26.8

Q ss_pred             EEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHH
Q 018266           47 LFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE   93 (358)
Q Consensus        47 v~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~   93 (358)
                      ..|..++|++|++....|++       .+  +.+..++++.+.....
T Consensus         2 ~ly~~~~Cp~C~~ak~~L~~-------~~--i~~~~~di~~~~~~~~   39 (72)
T TIGR02194         2 TVYSKNNCVQCKMTKKALEE-------HG--IAFEEINIDEQPEAID   39 (72)
T ss_pred             EEEeCCCCHHHHHHHHHHHH-------CC--CceEEEECCCCHHHHH
Confidence            46778999999998776653       34  5667778776654433

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>cd02336 ZZ_RSC8 Zinc finger, ZZ type

Probab=89.98  E-value=0.23  Score=31.23  Aligned_cols=30  Identities=27%  Similarity=0.504  Sum_probs=26.9

Q ss_pred             eeecCcCCCCcceEEEcCCCC-CCCCccccc
Q 018266          323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCVE  352 (358)
Q Consensus       323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~~  352 (358)
                      |.|..|...-+.-+|+|..+. |+|+|.|=.
T Consensus         1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~   31 (45)
T cd02336           1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ   31 (45)
T ss_pred             CcccCCCCccCceEEEecCCCccccChHHHh
Confidence            579999999999999999988 999999943

Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=89.88  E-value=0.48  Score=32.94  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=24.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ++.|..+|||.|.+....|.+       .+  +.+..++++.+.
T Consensus         3 v~lys~~~Cp~C~~ak~~L~~-------~~--i~~~~~~v~~~~   37 (72)
T cd03029           3 VSLFTKPGCPFCARAKAALQE-------NG--ISYEEIPLGKDI   37 (72)
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCcEEEECCCCh
Confidence            567889999999997665553       34  455566666543

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.61  E-value=4.4  Score=36.65  Aligned_cols=104  Identities=19%  Similarity=0.304  Sum_probs=66.6

Q ss_pred             chhhHhhhhccCCceecCCCcee---eecccCCcEEEEEEecc----CCcccHhhHHHHHHHHHHhhcc--cCCceEEEE
Q 018266          141 GKLEQLLAIEGRDYVLSRDHRKI---TVSELAGKTIGLYFGAH----WCPPCRSFTSQLIEVYNELKTT--ANHCFEVVL  211 (358)
Q Consensus       141 ~~l~~~~~~~~p~f~l~~~g~~~---~l~~~~~k~vlv~F~a~----wC~~C~~~~~~l~~l~~~~~~~--~~~~~~vv~  211 (358)
                      ..+.++.+-+.+.-.+..++..+   .....++-.+++.|.|.    .|..|..+..++.-+++.+...  ..++-++.+
T Consensus        28 ~kv~~L~~~ts~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF  107 (331)
T KOG2603|consen   28 NKVVQLMSWTSESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFF  107 (331)
T ss_pred             HHHHHHHhccCCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEE
Confidence            34445555344443433333322   22344555678888764    6999999999999999887642  122345666


Q ss_pred             EeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECC-CCcEE
Q 018266          212 VSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP-DGKTI  265 (358)
Q Consensus       212 v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~-~G~v~  265 (358)
                      -.+|-+.                     ..++.+.+++...|+++++.| .|+..
T Consensus       108 ~~Vd~~e---------------------~p~~Fq~l~ln~~P~l~~f~P~~~n~~  141 (331)
T KOG2603|consen  108 CMVDYDE---------------------SPQVFQQLNLNNVPHLVLFSPAKGNKK  141 (331)
T ss_pred             EEEeccc---------------------cHHHHHHhcccCCCeEEEeCCCccccc
Confidence            5555433                     468889999999999999965 55554

>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=89.33  E-value=3.7  Score=32.43  Aligned_cols=51  Identities=24%  Similarity=0.289  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC--ceeeEEEECCCCc
Q 018266          187 SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK  263 (358)
Q Consensus       187 ~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~  263 (358)
                      .....|.+++++|+.   ..+.++++..+..                       ..+.+.||+.  ++|++++++.++.
T Consensus        41 ~~~~~l~~vAk~~kg---k~i~Fv~vd~~~~-----------------------~~~~~~fgl~~~~~P~v~i~~~~~~   93 (130)
T cd02983          41 KYLEILKSVAEKFKK---KPWGWLWTEAGAQ-----------------------LDLEEALNIGGFGYPAMVAINFRKM   93 (130)
T ss_pred             HHHHHHHHHHHHhcC---CcEEEEEEeCccc-----------------------HHHHHHcCCCccCCCEEEEEecccC
Confidence            446788888999984   3378888877754                       4588999995  4999999988654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.

>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=88.85  E-value=5.9  Score=31.09  Aligned_cols=58  Identities=12%  Similarity=0.342  Sum_probs=42.9

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .+.|+|++-|.-.|-+.|.++-..+.++++.++.-   ..|..++++.-. .+.+.+.-.++
T Consensus        18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~---a~IY~vDi~~Vp-dfn~~yel~dP   75 (133)
T PF02966_consen   18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF---AVIYLVDIDEVP-DFNQMYELYDP   75 (133)
T ss_dssp             -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTTH-CCHHHTTS-SS
T ss_pred             cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc---eEEEEEEcccch-hhhcccccCCC
Confidence            35799999999999999999999999999988764   556666666443 35555555555

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.

>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains)

Probab=88.71  E-value=0.18  Score=31.95  Aligned_cols=36  Identities=25%  Similarity=0.488  Sum_probs=29.1

Q ss_pred             CCceeecCcCCCCcce--EEEcCCCCCCCCcccccCcc
Q 018266          320 AKAYVCDCCKMRGRFW--AFSCDVCNYDLHPKCVEGIN  355 (358)
Q Consensus       320 ~~~~~C~~C~e~g~~~--~~~~~~~~~~~~~~~~~~~~  355 (358)
                      ..+..|..|.+...+.  .|+|..|++-.|++|+....
T Consensus         9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~   46 (49)
T smart00109        9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP   46 (49)
T ss_pred             CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence            4456799999976653  79999999999999987643

Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=88.56  E-value=1.3  Score=38.81  Aligned_cols=46  Identities=17%  Similarity=0.373  Sum_probs=33.2

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +....-.||.+++.|+-|.||+|+++.+++.++.    +.+  +++.++...
T Consensus       100 i~~g~~~~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~--v~v~~~~~P  145 (232)
T PRK10877        100 IVYKAPQEKHVITVFTDITCGYCHKLHEQMKDYN----ALG--ITVRYLAFP  145 (232)
T ss_pred             EEecCCCCCEEEEEEECCCChHHHHHHHHHHHHh----cCC--eEEEEEecc
Confidence            3333346899999999999999999999887653    334  666655433

>PHA03050 glutaredoxin; Provisional

Probab=88.40  E-value=0.44  Score=36.35  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=17.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHH
Q 018266           46 CLFFSANWCRPCKTFTPQLVQ   66 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~   66 (358)
                      ++.|..+|||+|++....|.+
T Consensus        15 V~vys~~~CPyC~~ak~~L~~   35 (108)
T PHA03050         15 VTIFVKFTCPFCRNALDILNK   35 (108)
T ss_pred             EEEEECCCChHHHHHHHHHHH
Confidence            578899999999997776654

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=87.88  E-value=0.57  Score=40.71  Aligned_cols=64  Identities=11%  Similarity=0.271  Sum_probs=50.7

Q ss_pred             ccccCccc-ccCCCCc--eecccCC--CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           20 LASEGVEF-LLSRQGK--VPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        20 l~~~~~~~-l~~~~g~--v~l~~~~--gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+..+++ ++..+|+  .++.++.  +++++|.|.+--||+-+.-.+.|.++++++.+.   .+++.|-+.
T Consensus        75 ~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~---adFl~VYI~  143 (237)
T PF00837_consen   75 LGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV---ADFLIVYIE  143 (237)
T ss_pred             CCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh---hheehhhHh
Confidence            34455666 7777777  7888874  789999999888999999999999999999885   445555544

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []

Probab=87.73  E-value=1  Score=38.95  Aligned_cols=58  Identities=16%  Similarity=0.301  Sum_probs=47.8

Q ss_pred             cCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC-ceEEEEEEec
Q 018266           29 LSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-ELEVIFISFD   86 (358)
Q Consensus        29 ~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~-~~~iv~i~~d   86 (358)
                      ...+|.-.+.+..|++++|.+--.+|..|...+..|+.+..+|...|- ++.++.||--
T Consensus        13 W~i~~~~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~   71 (238)
T PF04592_consen   13 WKIGGQDPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ   71 (238)
T ss_pred             ceECCchHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence            444555677788899999999989999999999999999999987763 6777777754

It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=87.69  E-value=0.6  Score=36.94  Aligned_cols=60  Identities=12%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             CCEEEEEEeCC--CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           42 GKTICLFFSAN--WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        42 gk~vlv~F~a~--wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      +...+|+|-+.  =++-+....=.+.++++++....  +.++.|++|.+.                    .++.+|||.+
T Consensus        34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~--v~~akVDiD~~~--------------------~LA~~fgV~s   91 (132)
T PRK11509         34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE--------------------AIGDRFGVFR   91 (132)
T ss_pred             CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCc--eEEEEEECCCCH--------------------HHHHHcCCcc
Confidence            34555666533  33447777778899999985322  677778777665                    5788888888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      .|+.
T Consensus        92 iPTL   95 (132)
T PRK11509         92 FPAT   95 (132)
T ss_pred             CCEE
Confidence            8863

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=87.15  E-value=2.4  Score=34.04  Aligned_cols=62  Identities=21%  Similarity=0.242  Sum_probs=49.1

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ...++| +...+.+ +++.++.||..++.-+ +-.-|-|-.....|.+.+.++.+    ..+..||.|-
T Consensus        22 d~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~----~~Vl~IS~DL   86 (158)
T COG2077          22 DKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN----TVVLCISMDL   86 (158)
T ss_pred             CcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC----cEEEEEeCCC
Confidence            344566 8888988 9999999997777666 55667799999999888877755    5688899885

>PRK10954 periplasmic protein disulfide isomerase I; Provisional

Probab=86.32  E-value=0.83  Score=39.28  Aligned_cols=41  Identities=24%  Similarity=0.377  Sum_probs=30.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEe
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVS  213 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~  213 (358)
                      .|++.++.|+...||+|..+.+.+   ..+.+.+.    +++.++.+.
T Consensus        36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~----~~v~~~~~~   79 (207)
T PRK10954         36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLP----EGTKMTKYH   79 (207)
T ss_pred             CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCC----CCCeEEEec
Confidence            467889999999999999998865   67777765    444454433

>PRK10638 glutaredoxin 3; Provisional

Probab=86.19  E-value=2  Score=30.72  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=24.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ++.|..+||++|++....|++       .+  +....++++.+.
T Consensus         4 v~ly~~~~Cp~C~~a~~~L~~-------~g--i~y~~~dv~~~~   38 (83)
T PRK10638          4 VEIYTKATCPFCHRAKALLNS-------KG--VSFQEIPIDGDA   38 (83)
T ss_pred             EEEEECCCChhHHHHHHHHHH-------cC--CCcEEEECCCCH
Confidence            456778999999997766654       34  445566776554

>KOG3414 consensus Component of the U4/U6

Probab=85.54  E-value=1.9  Score=33.38  Aligned_cols=46  Identities=13%  Similarity=0.360  Sum_probs=37.5

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ....|+|+|-|.-.|-|.|..+-..+.++++.+++-   ..|..+++|.
T Consensus        20 ~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~Iylvdide   65 (142)
T KOG3414|consen   20 STEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDE   65 (142)
T ss_pred             cccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecch
Confidence            345699999999999999999999999999998764   4455556663

U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=85.02  E-value=0.14  Score=49.48  Aligned_cols=48  Identities=23%  Similarity=0.409  Sum_probs=36.9

Q ss_pred             CCceeeeee-cCCceeecCcCCCCcceE---EEcCCCCCCCCcccccCccCC
Q 018266          310 KHEHELKLD-MAKAYVCDCCKMRGRFWA---FSCDVCNYDLHPKCVEGINLN  357 (358)
Q Consensus       310 ~~~~~~~~~-~~~~~~C~~C~e~g~~~~---~~~~~~~~~~~~~~~~~~~~~  357 (358)
                      .+||.+..- +..+--|+.|.|+..|..   .+|+-|+.+.|.+||.+.-.|
T Consensus       143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNN  194 (888)
T KOG4236|consen  143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNN  194 (888)
T ss_pred             eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCC
Confidence            356655543 566777999999987775   689999999999999875433

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=84.70  E-value=1.3  Score=43.80  Aligned_cols=60  Identities=13%  Similarity=0.094  Sum_probs=40.5

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      .+.++.-+.-|+.++||+|......+.+++..    .+++..-.|+.....                    +++.+|++.
T Consensus       113 ~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~----~~~i~~~~id~~~~~--------------------~~~~~~~v~  168 (517)
T PRK15317        113 ALDGDFHFETYVSLSCHNCPDVVQALNLMAVL----NPNITHTMIDGALFQ--------------------DEVEARNIM  168 (517)
T ss_pred             hcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh----CCCceEEEEEchhCH--------------------hHHHhcCCc
Confidence            34566778899999999999888777776663    233666566444333                    456677777


Q ss_pred             CCCc
Q 018266          119 AYPF  122 (358)
Q Consensus       119 ~~P~  122 (358)
                      ..|.
T Consensus       169 ~VP~  172 (517)
T PRK15317        169 AVPT  172 (517)
T ss_pred             ccCE
Confidence            6664

>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long

Probab=84.63  E-value=1.1  Score=34.01  Aligned_cols=27  Identities=30%  Similarity=0.604  Sum_probs=22.6

Q ss_pred             HHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          240 RQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       240 ~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ...+...||+..+|+++++ ++|+.+..
T Consensus        71 e~~L~~r~gv~~~PaLvf~-R~g~~lG~   97 (107)
T PF07449_consen   71 ERALAARFGVRRWPALVFF-RDGRYLGA   97 (107)
T ss_dssp             HHHHHHHHT-TSSSEEEEE-ETTEEEEE
T ss_pred             HHHHHHHhCCccCCeEEEE-ECCEEEEE
Confidence            4789999999999999999 77877665

This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.

>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI

Probab=84.16  E-value=4.5  Score=30.96  Aligned_cols=51  Identities=10%  Similarity=0.238  Sum_probs=34.8

Q ss_pred             HhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc----eeeEEEECCC
Q 018266          186 RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGPD  261 (358)
Q Consensus       186 ~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~  261 (358)
                      ......+.+++++++.   .+  +.++.+|.+.                     .....+.||+..    .|++.+++.+
T Consensus        34 ~~~~~~~~~vAk~fk~---gk--i~Fv~~D~~~---------------------~~~~l~~fgl~~~~~~~P~~~i~~~~   87 (111)
T cd03073          34 NYWRNRVLKVAKDFPD---RK--LNFAVADKED---------------------FSHELEEFGLDFSGGEKPVVAIRTAK   87 (111)
T ss_pred             HHHHHHHHHHHHHCcC---Ce--EEEEEEcHHH---------------------HHHHHHHcCCCcccCCCCEEEEEeCC
Confidence            4556778888888871   23  5555555432                     234778999974    9999999866


Q ss_pred             C
Q 018266          262 G  262 (358)
Q Consensus       262 G  262 (358)
                      +
T Consensus        88 ~   88 (111)
T cd03073          88 G   88 (111)
T ss_pred             C
Confidence            5

They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=83.22  E-value=2.1  Score=41.03  Aligned_cols=35  Identities=20%  Similarity=0.200  Sum_probs=23.6

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      ++.|..+|||+|......|.+          .++.+-.|.+|.+.
T Consensus         4 V~vys~~~Cp~C~~aK~~L~~----------~gi~~~~idi~~~~   38 (410)
T PRK12759          4 VRIYTKTNCPFCDLAKSWFGA----------NDIPFTQISLDDDV   38 (410)
T ss_pred             EEEEeCCCCHHHHHHHHHHHH----------CCCCeEEEECCCCh
Confidence            567899999999987766654          23444456666543

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=83.20  E-value=7.2  Score=26.70  Aligned_cols=59  Identities=17%  Similarity=0.214  Sum_probs=35.4

Q ss_pred             EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeE
Q 018266          176 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL  255 (358)
Q Consensus       176 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~  255 (358)
                      .|+..||+.|.+..-.|...        +-.++++.+.....                      ..++.+......+|++
T Consensus         3 ly~~~~~p~~~rv~~~L~~~--------gl~~e~~~v~~~~~----------------------~~~~~~~np~~~vP~L   52 (71)
T cd03060           3 LYSFRRCPYAMRARMALLLA--------GITVELREVELKNK----------------------PAEMLAASPKGTVPVL   52 (71)
T ss_pred             EEecCCCcHHHHHHHHHHHc--------CCCcEEEEeCCCCC----------------------CHHHHHHCCCCCCCEE
Confidence            46789999998876555432        24566666655322                      1345455556778988


Q ss_pred             EEECCCCcEEe
Q 018266          256 VLIGPDGKTIS  266 (358)
Q Consensus       256 ~lid~~G~v~~  266 (358)
                      .  +.+|..+.
T Consensus        53 ~--~~~g~~l~   61 (71)
T cd03060          53 V--LGNGTVIE   61 (71)
T ss_pred             E--ECCCcEEe
Confidence            4  24566553

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=82.83  E-value=3.7  Score=29.98  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=24.1

Q ss_pred             CCCEEEEEEeC----CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           41 GGKTICLFFSA----NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        41 ~gk~vlv~F~a----~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +++.|+|+=..    |||++|++....|.+       .+  +.+..++++.+.
T Consensus         6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~-------~~--i~y~~idv~~~~   49 (90)
T cd03028           6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQ-------LG--VDFGTFDILEDE   49 (90)
T ss_pred             ccCCEEEEEcCCCCCCCCcHHHHHHHHHHH-------cC--CCeEEEEcCCCH
Confidence            34556555332    799999997665544       34  445556665543

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin

Probab=82.47  E-value=3  Score=37.31  Aligned_cols=42  Identities=10%  Similarity=0.079  Sum_probs=32.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ++..|+|.||-+.++.|..+...|..+|.++..    +.++-|...
T Consensus       145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~  186 (265)
T PF02114_consen  145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRAS  186 (265)
T ss_dssp             TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEEC
T ss_pred             CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehh
Confidence            356899999999999999999999999999865    556666554

Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.

>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.95  E-value=2.4  Score=36.25  Aligned_cols=57  Identities=18%  Similarity=0.333  Sum_probs=42.3

Q ss_pred             ccCCCCceecccC-CCC---EEEEEEeCC----CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGKVPLSSC-GGK---TICLFFSAN----WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~v~l~~~-~gk---~vlv~F~a~----wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .-..+|+.+|+++ .||   .|.=++++|    -|+-|..++.++...-.-|..++  +.+++|+--
T Consensus        57 Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~d--v~lv~VsRA  121 (247)
T COG4312          57 FETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHD--VTLVAVSRA  121 (247)
T ss_pred             eecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcC--ceEEEEecC
Confidence            4456677888885 565   333344566    69999999999988888888887  778877754

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=81.44  E-value=4.1  Score=29.05  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=22.9

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|.-++||+|.+....|.       +.|  +++..+.++.+
T Consensus         3 v~iyt~~~CPyC~~ak~~L~-------~~g--~~~~~i~~~~~   36 (80)
T COG0695           3 VTIYTKPGCPYCKRAKRLLD-------RKG--VDYEEIDVDDD   36 (80)
T ss_pred             EEEEECCCCchHHHHHHHHH-------HcC--CCcEEEEecCC
Confidence            46788999999999665554       556  44555555543

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=81.29  E-value=3.7  Score=30.51  Aligned_cols=39  Identities=13%  Similarity=0.231  Sum_probs=23.7

Q ss_pred             CCEEEEEEe----CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           42 GKTICLFFS----ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        42 gk~vlv~F~----a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      .+.|+|+=.    +||||+|.+....|.+       .+  +.+..++++.+.
T Consensus        11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~--i~~~~~di~~~~   53 (97)
T TIGR00365        11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CG--VPFAYVNVLEDP   53 (97)
T ss_pred             cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cC--CCEEEEECCCCH
Confidence            344555543    3999999997766544       34  345556665443

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1oc9_A	152	Tryparedoxin Ii From C.Fasciculata Solved By Mr Len		1e-21
1o6j_A	150	Tryparedoxin Ii From C.Fasciculata Solved By Sulphu		2e-21
1fg4_A	149	Structure Of Tryparedoxin Ii Length = 149		2e-21
1o81_A	152	Tryparedoxin Ii From C.fasciculata Solved By Sulphu		2e-21
1i5g_A	144	Tryparedoxin Ii Complexed With Glutathionylspermidi		2e-20
2lus_A	143	Nmr Structure Of Carcinoscorpius Rotundicauda Thior		6e-20
1ewx_A	146	Crystal Structure Of Native Tryparedoxin I From Cri		1e-19
1ezk_A	153	Crystal Structure Of Recombinant Tryparedoxin I Len		1e-19
1qk8_A	146	Tryparedoxin-I From Crithidia Fasciculata Length =		1e-19
1okd_A	154	Nmr-Structure Of Tryparedoxin 1 Length = 154		1e-19
1o73_A	144	Tryparedoxin From Trypanosoma Brucei Length = 144		4e-19
3s9f_A	165	The Structure Of Tryparedoxin I From Leishmania Maj		8e-19
1o8x_A	146	Mutant Tryparedoxin-I Cys43ala Length = 146		8e-19
1v5n_A	89	Solution Structure Of Dc1 Domain Of Pdi-Like Hypoth		3e-11
2lrn_A	152	Solution Structure Of A Thiol:disulfide Interchange		1e-04
1jfu_A	186	Crystal Structure Of The Soluble Domain Of Tlpa Fro		1e-04
2h1b_A	143	Resa E80q Length = 143		5e-04
3fk8_A	133	The Crystal Structure Of Disulphide Isomerase From		6e-04

>pdb|1OC9|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Mr Length = 152

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 4/121 (3%)
Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y     + N  FEV+L+S 
Sbjct: 16  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKN--FEVMLISW 73
Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 74  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 273 I 273
           +
Sbjct: 134 V 134

>pdb|1O6J|A Chain A, Tryparedoxin Ii From C.Fasciculata Solved By Sulphur Phasing Length = 150

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 14  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 71
Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 72  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 131
Query: 273 I 273
           +
Sbjct: 132 V 132

>pdb|1FG4|A Chain A, Structure Of Tryparedoxin Ii Length = 149

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 273 I 273
           +
Sbjct: 131 V 131

>pdb|1O81|A Chain A, Tryparedoxin Ii From C.fasciculata Solved By Sulphur Phasing Length = 152

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 71/121 (58%), Gaps = 4/121 (3%)
Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPPCR+FT QLI+ Y       N  FEV+L+S 
Sbjct: 16  VLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKN--FEVMLISW 73
Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 74  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 133
Query: 273 I 273
           +
Sbjct: 134 V 134

>pdb|1I5G|A Chain A, Tryparedoxin Ii Complexed With Glutathionylspermidine Length = 144

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/121 (42%), Positives = 70/121 (57%), Gaps = 4/121 (3%)
Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y       N  FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISW 70
Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQD-LCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130
Query: 273 I 273
           +
Sbjct: 131 V 131

>pdb|2LUS|A Chain A, Nmr Structure Of Carcinoscorpius Rotundicauda Thioredoxin Related Protein 16 And Its Role In Regulating Transcription Factor Nf-Kb Activity Length = 143

Iteration: 1
 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 66/113 (58%), Gaps = 7/113 (6%)
Query: 173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP--- 229
           IG YF AHWCPPCR FT  L ++Y+EL    +  FE++ VS+DR   E D+   +M    
Sbjct: 29  IGFYFSAHWCPPCRGFTPILADMYSEL-VDDSAPFEIIFVSSDR--SEDDMFQYMMESHG 85
Query: 230 -WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 281
            WLAIPY      ++   + I GIPALV++  DG  IS NG+  +   G +AF
Sbjct: 86  DWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRGEVQSLGPRAF 138

>pdb|1EWX|A Chain A, Crystal Structure Of Native Tryparedoxin I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 216 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 273
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1EZK|A Chain A, Crystal Structure Of Recombinant Tryparedoxin I Length = 153

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 13  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 70
Query: 216 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 273
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 71  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 130

>pdb|1QK8|A Chain A, Tryparedoxin-I From Crithidia Fasciculata Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L R   ++ V  LAGK +  YF A WCPPCR FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPCRGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 216 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 273
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1O73|A Chain A, Tryparedoxin From Trypanosoma Brucei Length = 144

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE 208
           + G   +LS+   ++++  L GKT+ LYF A WCPPCR FT  L E Y +     N  FE
Sbjct: 8   LPGATNLLSKS-GEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FE 64
Query: 209 VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTIS 266
           VVL+S D +  +F   +  MPWLA+P++ R+   +L + F ++ IP L+ I  D G  I 
Sbjct: 65  VVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIG 124
Query: 267 TNGKEMI 273
           T  +  +
Sbjct: 125 TQARTRV 131

>pdb|3S9F|A Chain A, The Structure Of Tryparedoxin I From Leishmania Major Length = 165

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 70/112 (62%), Gaps = 4/112 (3%)
Query: 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224
           +  L+GKT+  YF A WCPPCR FT QL+E Y +   + N  FE++L S D +  +F+  
Sbjct: 43  MDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSKN--FEIILASWDEEEDDFNAY 100
Query: 225 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS 274
           ++ MPWL+IP+ +R   + L + ++++ IP L+ +  D G T++T  +  ++
Sbjct: 101 YAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALT 152

>pdb|1O8X|A Chain A, Mutant Tryparedoxin-I Cys43ala Length = 146

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71
Query: 216 RDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI 273
            +   F    + MPWLA+P+ +  A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical Protein From Arabidopsis Thaliana Length = 89

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKHE-HELKLDMAKAYVCDCCKMRGRFW 335
           G+     TE R+ EIE    +     P++VK V HE HEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60
Query: 336 AFSCDVCNYDLHPKCV 351
           ++ CD C++DLH KC 
Sbjct: 61  SYHCDECDFDLHAKCA 76

>pdb|2LRN|A Chain A, Solution Structure Of A Thiol:disulfide Interchange Protein From Bacteroides Sp. Length = 152

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 222
           +++++  GK + + F    C  CR  T  L++ YN  K   +  F +  VSTDR  +E D
Sbjct: 22  VSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDR--REED 76
Query: 223 LNHSIMP----WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 266
              +I      W  +  +    +D+   + I G P ++L+ P+GK ++
Sbjct: 77  WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVA 124

>pdb|1JFU|A Chain A, Crystal Structure Of The Soluble Domain Of Tlpa From Bradyrhizobium Japonicum Length = 186

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 56/114 (49%), Gaps = 8/114 (7%)
Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-RD 217
           D +   +S+  GKT+ +   A WC PCR     L E+  +L   +   FEVV ++ D RD
Sbjct: 49  DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKL---SGPNFEVVAINIDTRD 105
Query: 218 HKEFD--LNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 267
            ++    L  + +  L    + +A+  QDL  I    G+P  VL+ P G  I+T
Sbjct: 106 PEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 159

>pdb|2H1B|A Chain A, Resa E80q Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 14/123 (11%)
Query: 150 EGRD---YVLS-RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 205
           EG D   +VL   + ++I +S+L GK + L F   WC PC+    Q   + N+ K   + 
Sbjct: 2   EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCK---KQFPYMANQYKHFKSQ 58
Query: 206 CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE---DRARQDLCRIFNIKGIPALVLIGPDG 262
             E+V V+           H+ M    + +    D  RQ L   +++  +P   LI P+G
Sbjct: 59  GVEIVAVNVGESKIAV---HNFMKSYGVNFPVVLDTDRQVL-DAYDVSPLPTTFLINPEG 114
Query: 263 KTI 265
           K +
Sbjct: 115 KVV 117

>pdb|3FK8|A Chain A, The Crystal Structure Of Disulphide Isomerase From Xylella Fastidiosa Temecula1 Length = 133

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%)
Query: 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 234
           L FGA+WC  CR+    L    N     A H FEVV +    D   FD N  +      P
Sbjct: 34  LVFGANWCTDCRALDKSLRNQKNT-ALIAKH-FEVVKI----DVGNFDRNLELSQAYGDP 87
Query: 235 YEDRARQDLCRIFNIKGIPALVLIGPDGKT-ISTNGKEMIS 274
            +D             GIPA+V++  DGK   +T G E+ +
Sbjct: 88  IQD-------------GIPAVVVVNSDGKVRYTTKGGELAN 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	2e-43
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	4e-20
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	4e-43
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	1e-17
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	1e-40
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	2e-19
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	8e-40
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	1e-19
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	6e-39
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	4e-19
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	4e-23
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	3e-18
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	5e-09
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	6e-18
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	2e-08
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	3e-17
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	2e-09
2lrt_A	152	Uncharacterized protein; structural genomics, thio	5e-17
2lrt_A	152	Uncharacterized protein; structural genomics, thio	6e-09
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	4e-15
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	1e-08
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	8e-15
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	3e-08
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	1e-14
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	3e-09
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	2e-13
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	5e-06
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	1e-12
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	2e-05
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	4e-12
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	1e-05
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	7e-12
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	3e-08
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	1e-11
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	6e-05
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	1e-11
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	9e-05
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	1e-11
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-11
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	2e-05
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-11
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	2e-07
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-11
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	2e-07
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	4e-11
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	4e-06
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	4e-11
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	4e-06
3raz_A	151	Thioredoxin-related protein; structural genomics,	6e-11
3raz_A	151	Thioredoxin-related protein; structural genomics,	3e-06
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	7e-11
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	4e-06
4evm_A	138	Thioredoxin family protein; structural genomics, n	2e-10
4evm_A	138	Thioredoxin family protein; structural genomics, n	4e-05
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	8e-10
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	6e-06
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	2e-09
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	5e-04
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	3e-09
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	9e-06
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	4e-08
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	1e-05
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	9e-08
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	3e-04
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	2e-07
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	3e-05
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	2e-07
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	5e-07
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	6e-07
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	1e-06
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	5e-06
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	6e-06
2l57_A	126	Uncharacterized protein; structural genomics, unkn	1e-05
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	1e-05
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	1e-05
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	6e-05
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	7e-05
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	8e-05
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	1e-04
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	1e-04
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	1e-04
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	2e-04
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	2e-04
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	2e-04
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	3e-04
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	3e-04
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	3e-04
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	6e-04
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	6e-04

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score =  146 bits (371), Expect = 2e-43
 Identities = 45/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 139 QGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE 198
           +G  +  +    G    L +      +  L+GKT+  YF A WCPPCR FT QL+E Y +
Sbjct: 17  RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76

Query: 199 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVL 257
                +  FE++L S D +  +F+  ++ MPWL+IP+ +R   + L + ++++ IP L+ 
Sbjct: 77  HH--DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIG 134

Query: 258 IGPD-GKTISTNGK-EMISLYGAKAFPFTE 285
           +  D G T++T  +  +      + FP+ +
Sbjct: 135 LNADTGDTVTTRARHALTQDPMGEQFPWRD 164

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major} Length = 165

 Score = 85.3 bits (211), Expect = 4e-20
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 12  DSSDFLTVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDT 70
             S    V    G    L +Q     + S  GKT+  +FSA+WC PC+ FTPQLV+ Y+ 
Sbjct: 17  RGSHMSGVAKHLGEALKLRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEK 76

Query: 71  LRTRGTELEVIFISFDHDENGFEEHFKSSDGT----LIEEDLIGLIEDYGADAYPFT 123
                   E+I  S+D +E+ F  ++               +  L + Y  ++ P  
Sbjct: 77  HH-DSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYSVESIPTL 132

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score =  145 bits (367), Expect = 4e-43
 Identities = 55/141 (39%), Positives = 75/141 (53%), Gaps = 5/141 (3%)

Query: 148 AIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
                  VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y       N  F
Sbjct: 6   FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--F 63

Query: 208 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTI 265
           EV+L+S D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I
Sbjct: 64  EVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNII 123

Query: 266 STNGKEMI-SLYGAKAFPFTE 285
           +T  + M+     AK FP+  
Sbjct: 124 TTQARTMVVKDPEAKDFPWPN 144

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A Length = 144

 Score = 77.9 bits (192), Expect = 1e-17
 Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 6/108 (5%)

Query: 21  ASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELE 79
                  +L      + L S  GKT+  +FSA+WC P + FTPQL+  Y     +    E
Sbjct: 6   FFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKK-NFE 64

Query: 80  VIFISFDHDENGFEEHFKSSDGT-LIEEDLIG---LIEDYGADAYPFT 123
           V+ IS+D     F++++       L  ED  G   L   +   + P  
Sbjct: 65  VMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTL 112

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score =  139 bits (351), Expect = 1e-40
 Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 155 VLSRDHRKITVSELA--GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLV 212
           ++ ++  ++  +E       IG YF AHWCPPCR FT  L ++Y+EL    +  FE++ V
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFV 67

Query: 213 STDRDHKEFD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 270
           S+DR   +    +  S   WLAIPY      ++   + I GIPALV++  DG  IS NG+
Sbjct: 68  SSDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGR 127

Query: 271 EMISLYGAKAF 281
             +   G +AF
Sbjct: 128 GEVQSLGPRAF 138

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda} Length = 143

 Score = 82.9 bits (205), Expect = 2e-19
 Identities = 30/130 (23%), Positives = 46/130 (35%), Gaps = 37/130 (28%)

Query: 28  LLSRQGK-VPLSSC--GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
           L+ +    V  +        I  +FSA+WC PC+ FTP L  +Y  L       E+IF+S
Sbjct: 9   LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVS 68

Query: 85  FDHDENGFEEHFK----------------------------------SSDGTLIEEDLIG 110
            D  E+   ++                                      DGTLI  +  G
Sbjct: 69  SDRSEDDMFQYMMESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG 128

Query: 111 LIEDYGADAY 120
            ++  G  A+
Sbjct: 129 EVQSLGPRAF 138

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score =  136 bits (345), Expect = 8e-40
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N  FEVV  + D
Sbjct: 14  LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKN--FEVVFCTWD 71

Query: 216 RDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 272
            +   F    + MPWLA+P+    A Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 72  EEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 131

Query: 273 ISLYGAKAFPFTES 286
           +     + FP+ ++
Sbjct: 132 VKDPEGEQFPWKDA 145

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A Length = 146

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 24  GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
           G+E L    G+V + S  GK +  +FSA+WC P + FTPQL++ YD         EV+F 
Sbjct: 10  GIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFH-ESKNFEVVFC 68

Query: 84  SFDHDENGFEEHFKSSDGT----LIEEDLIGLIEDYGADAYPFT 123
           ++D +E+GF  +F             E +  L + +  ++ P  
Sbjct: 69  TWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTL 112

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score =  134 bits (340), Expect = 6e-39
 Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 5/133 (3%)

Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
           L     ++++  L GKT+ LYF A WCPPCR FT  L E Y +     N  FEVVL+S D
Sbjct: 14  LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVAKN--FEVVLISWD 71

Query: 216 RDHKEFDLNHSIMPWLAIPYEDRARQ-DLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 272
            +  +F   +  MPWLA+P++ R+   +L + F ++ IP L+ I  D G  I T  +  +
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRV 131

Query: 273 ISLYGAKAFPFTE 285
           I       FP+  
Sbjct: 132 IEDPDGANFPWPN 144

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10 Length = 144

 Score = 82.0 bits (203), Expect = 4e-19
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
            L  +   V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ IS+D
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLISWD 71

Query: 87  HDENGFEEHFKSSDGTLIEEDLIG----LIEDYGADAYPFT 123
            +E+ F +++       +  D       L + +G ++ P  
Sbjct: 72  ENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTL 112

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3 Length = 89

 Score = 91.1 bits (226), Expect = 4e-23
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)

Query: 277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 335
           G+     TE R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60

Query: 336 AFSCDVCNYDLHPKCV 351
           ++ CD C++DLH KC 
Sbjct: 61  SYHCDECDFDLHAKCA 76

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 79.3 bits (196), Expect = 3e-18
 Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 3/109 (2%)

Query: 162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 221
              +S L  +   L+F    C  CR F     E+   ++   N    V+ +  D + +E+
Sbjct: 19  NSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEW 78

Query: 222 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
                +    W+ + +         ++++I+  P + L+    + I  +
Sbjct: 79  ATKAVYMPQGWI-VGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILKD 126

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis} Length = 142

 Score = 53.5 bits (129), Expect = 5e-09
 Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 10/104 (9%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFI 83
            ++  G    +S    +   LFF    C  C+ F     +     + +      L V+ I
Sbjct: 12  YVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAI 69

Query: 84  SFDHDENGFEEHFKSSDGTLI----EEDLIGLIEDYGADAYPFT 123
             D +   +           I    +   I   + Y   A P  
Sbjct: 70  YPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYDIRATPTI 113

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 78.9 bits (195), Expect = 6e-18
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 19/142 (13%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 218
               + ++  K   L+F    C  C+  T +L + + + +       +V   + +R    
Sbjct: 22  TYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNR---AKGIQVYAANIERKDEE 78

Query: 219 -KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN-GKEMISLY 276
             +F  +  I  WL +  + +   D    ++I   P L ++  +   I+   G E +   
Sbjct: 79  WLKFIRSKKIGGWLNV-RDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKRIGYENL--- 134

Query: 277 GAKAFPFTESRIAEIETALKKE 298
                   +  + + E +LK +
Sbjct: 135 --------DDFLVQYEKSLKTK 148

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii} Length = 148

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 2/65 (3%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
             L     K   LFF  + C  C+  TP+L   +   R +G  ++V   + +  +  + 
Sbjct: 23 YRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWL 80

Query: 94 EHFKS 98
          +  +S
Sbjct: 81 KFIRS 85

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 76.6 bits (189), Expect = 3e-17
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF 221
           K T+ +   +   L+     C  C      L         TA    +V+ +  D +  E+
Sbjct: 23  KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82

Query: 222 D--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAK 279
               N     W    Y+         +++++ IP L L+  +   +  +           
Sbjct: 83  KKHRNDFAKEWT-NGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD----------- 130

Query: 280 AFPFTESRIAEIETALKK 297
                 + + ++E  L +
Sbjct: 131 ------ATLQKVEQYLAE 142

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis} Length = 142

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGF 92
           K  L     +   LF +   C  C      L             +L+V+ I  D + + +
Sbjct: 23  KGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEW 82

Query: 93  EEHFKSSDGTLI----EEDLIGLIEDYGADAYPFT 123
           ++H             +E +I     Y   A P  
Sbjct: 83  KKHRNDFAKEWTNGYDKELVIKNKNLYDLRAIPTL 117

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 19/108 (17%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
              ++++L GK + + F  +      +    L E+YN+     +  FE+  +S D D   
Sbjct: 26  NTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYA---SQGFEIYQISLDGDEHF 82

Query: 221 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           +  +   +PW+ +   + A      ++N+  +P++ L+  + +  +  
Sbjct: 83  WKTSADNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG 130

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus} Length = 152

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 26/129 (20%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              L+   GK + + F+             L +LY+   ++G   E+  IS D DE+ ++
Sbjct: 27  TRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWK 84

Query: 94  EHFKS------SDGTLIEEDLIGLIEDYGADAYPFT---------RKRREELKAIDDSKR 138
               +       D           I  Y     P             R E +K +D+   
Sbjct: 85  TSADNLPWVCVRDANGAYSS---YISLYNVTNLPSVFLVNRNNELSARGENIKDLDE--- 138

Query: 139 QGGKLEQLL 147
               +++LL
Sbjct: 139 ---AIKKLL 144

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 5/110 (4%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
             +++++  GK + + F    C  CR  T  L++ YN  K   +  F +  VSTDR  ++
Sbjct: 20  NSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFK---DKGFTIYGVSTDRREED 76

Query: 221 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
           +   +      W  +  +    +D+   + I G P ++L+ P+GK ++  
Sbjct: 77  WKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE 126

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 20/95 (21%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
            V L+   GK + + F    C  C+  TP L++ Y+  + +G    +  +S D  E  ++
Sbjct: 21  SVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWK 78

Query: 94  EHFKSSDGT----LIEEDLIGLI-EDYGADAYPFT 123
           +  +         L+++D +  + E Y    +P  
Sbjct: 79  KAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHI 113

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 70.1 bits (172), Expect = 8e-15
 Identities = 22/134 (16%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 141 GKLEQLLAIEGR---DYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYN 197
           GKL + +   G          +  K +     G+   L F A +    R+   QL    N
Sbjct: 1   GKLTEGVNP-GDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVN 59

Query: 198 ELKTTANHCFEVVLVSTDRD---HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA 254
           +          +  +S D       E      +              +L + ++++    
Sbjct: 60  KFG---PDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFK 116

Query: 255 LVLIGPDGKTISTN 268
             LI  +G  I+ N
Sbjct: 117 NFLINDEGVIIAAN 130

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis} Length = 143

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 8/102 (7%)

Query: 28  LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH 87
            L    K    +  G+   L F A +    +    QL    +        + +  IS D 
Sbjct: 18  FLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDE 75

Query: 88  DENGFEEHFKSSDGTLIEE--DLIG----LIEDYGADAYPFT 123
            E+ F E  K     L  +  + +G    L + Y        
Sbjct: 76  KESIFTETVKIDKLDLSTQFHEGLGKESELYKKYDLRKGFKN 117

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 69.6 bits (171), Expect = 1e-14
 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
           + +++++L GK I +   A WC PCR     L E+  +           V +S D++ K 
Sbjct: 21  KTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYA---GKDIHFVSLSCDKNKKA 77

Query: 221 FD--LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
           ++  +    +    I       +     + I GIP  +L+  DGK IS N          
Sbjct: 78  WENMVTKDQLKG--IQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN-------MTR 128

Query: 279 KAFPFTESRIAEIETALKKEG 299
            + P T  +  E+   L  EG
Sbjct: 129 PSDPKTAEKFNEL---LGLEG 146

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus} Length = 152

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 24/141 (17%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
                GK V L+   GK I +   A WC PC+   P L +L +    +   +  + +S D
Sbjct: 15  YPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCD 72

Query: 87  HDENGFEEHFKSSDGT---LIEEDLIGLIEDYGADAYPFT------------RKRREELK 131
            ++  +E            L        ++ Y  +  P                 R    
Sbjct: 73  KNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISANMTRPSDP 132

Query: 132 AIDDSKRQGGKLEQLLAIEGR 152
              +      K  +LL +EG 
Sbjct: 133 KTAE------KFNELLGLEGH 147

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 19/140 (13%)

Query: 162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 218
             +      + + L F A WC P     ++L  +  E K   N  F ++ +S D D    
Sbjct: 25  SRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAW 82

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
           +   +    + W  +        +  + + I  +P  +L+ P GK ++ +      + G 
Sbjct: 83  ETA-IKKDTLSWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD------IQG- 134

Query: 279 KAFPFTESRIAEIETALKKE 298
                   ++ E+   LK E
Sbjct: 135 ---EALTGKLKEL---LKTE 148

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis} Length = 148

 Score = 45.0 bits (107), Expect = 5e-06
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 34  KVPLSSCG--GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG 91
           K+  S+     + + L F A+WC P      +L +L    + +     ++ IS D D   
Sbjct: 23  KLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYK-KNKNFAMLGISLDIDREA 81

Query: 92  FEEHFKS--------SDGTLIEEDLIGLIEDYGADAYPFT 123
           +E   K          D T +  +     + Y     P  
Sbjct: 82  WETAIKKDTLSWDQVCDFTGLSSE---TAKQYAILTLPTN 118

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 149 IEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTS--QLIEVYNELKTTANHC 206
            +G     S D  K        K++ + F A W        S  +L E+Y + K      
Sbjct: 19  AKGEKITRSSDAFK-------QKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY-- 69

Query: 207 FEVVLVSTDRDH---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
             ++ +S D D    K+  +    + W  +        ++ + ++I  IPA +L+  DGK
Sbjct: 70  IGMLGISLDVDKQQWKDA-IKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGK 128

Query: 264 TISTN 268
            ++ N
Sbjct: 129 ILAKN 133

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron} Length = 150

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 19/109 (17%), Positives = 42/109 (38%), Gaps = 17/109 (15%)

Query: 28  LLSRQGK-VPLSSCG--GKTICLFFSANWCRPC--KTFTPQLVQLYDTLRTRGTELEVIF 82
           L + +G+ +  SS     K++ + F A+W      K    +L ++Y   +     + ++ 
Sbjct: 16  LPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNK-YIGMLG 74

Query: 83  ISFDHDENGFEEHFKS--------SDGTLIEEDLIGLIEDYGADAYPFT 123
           IS D D+  +++  K          D   +  +   + + Y     P  
Sbjct: 75  ISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSE---VAKQYSIYKIPAN 120

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 62.7 bits (153), Expect = 4e-12
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 29/163 (17%)

Query: 147 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 202
           ++++ +    + L     + ++ ++L GK   + F    CP C S   ++I+  N+ K  
Sbjct: 1   MSLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYK-- 58

Query: 203 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 256
            N  F+V+ V+   D  E     S+  ++    +P+    D A + + + F  +  P  V
Sbjct: 59  -NKNFQVLAVAQPIDPIE-----SVRQYVKDYGLPFTVMYD-ADKAVGQAFGTQVYPTSV 111

Query: 257 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG 299
           LIG  G+ + T         G   F        EI+TA +   
Sbjct: 112 LIGKKGEILKTY-------VGEPDFGKLY---QEIDTAWRNSD 144

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B} Length = 153

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 14/94 (14%), Positives = 35/94 (37%), Gaps = 7/94 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
            V  +   GK   + F    C  C +  P++++  +  + +    +V+ ++   D     
Sbjct: 20  TVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESV 77

Query: 94  EHFKSSDG----TLIEEDLIGLIEDYGADAYPFT 123
             +    G     + + D   + + +G   YP +
Sbjct: 78  RQYVKDYGLPFTVMYDADK-AVGQAFGTQVYPTS 110

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 10/110 (9%)

Query: 162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--- 218
            + +S+  G  + L F A WC PCR     + ++  + K      F+VV V+ D      
Sbjct: 20  VVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYK---AKGFQVVAVNLDAKTGDA 76

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN 268
            +F L      +              R++ +KG+P   LI  +GK +  +
Sbjct: 77  MKF-LAQVPAEFTVAFDPK---GQTPRLYGVKGMPTSFLIDRNGKVLLQH 122

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls} Length = 152

 Score = 51.5 bits (124), Expect = 3e-08
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 4/93 (4%)

Query: 33  GKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF 92
           G V LS   G  + L F A+WC PC+   P + Q+    + +G   +V+ ++ D      
Sbjct: 19  GVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDA 76

Query: 93  EEHFKSSDGTL-IEEDLIGLI-EDYGADAYPFT 123
            +          +  D  G     YG    P +
Sbjct: 77  MKFLAQVPAEFTVAFDPKGQTPRLYGVKGMPTS 109

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 62.1 bits (151), Expect = 1e-11
 Identities = 40/148 (27%), Positives = 62/148 (41%), Gaps = 18/148 (12%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
           +   +S+  GKT+ +   A WC PCR     L E+  +L       FEVV ++ D    E
Sbjct: 51  KPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLS---GPNFEVVAINIDTRDPE 107

Query: 221 ----F--DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMIS 274
               F  + N + + +     + +  QDL  I    G+P  VL+ P G  I+T       
Sbjct: 108 KPKTFLKEANLTRLGYFNDQ-KAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT------- 159

Query: 275 LYGAKAFPFTESRIAEIETALKKEGDAL 302
           + G   +  +E  +  I  A  K   AL
Sbjct: 160 IAGPAEWA-SEDALKLIRAATGKAAAAL 186

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10 Length = 186

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
                GK   LS   GKT+ +   A WC PC+   P L +L   L       EV+ I+ D
Sbjct: 45  FEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINID 102

Query: 87  HDE 89
             +
Sbjct: 103 TRD 105

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 22/117 (18%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRDH- 218
             +T+++L GK I +      CP C         +V             V+ + T  +H 
Sbjct: 19  TDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFP---EDKVAVLGLHTVFEHH 75

Query: 219 ------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
                        E+ +     P       D A       + ++G P+L+LI   G 
Sbjct: 76  EAMTPISLKAFLHEYRIKF---PVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGD 129

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi} Length = 158

 Score = 41.3 bits (97), Expect = 9e-05
 Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFISFD 86
            +    + L+   GK I +      C  C     P   ++          + V+ +   
Sbjct: 14 WFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTV 71

Query: 87 HDEN 90
           + +
Sbjct: 72 FEHH 75

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis} Length = 352

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 42/235 (17%), Positives = 73/235 (31%), Gaps = 29/235 (12%)

Query: 87  HDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQL 146
           H  +G E  +  S    I E L         +       +  +L    D   Q       
Sbjct: 7   HHHHGSENLYFQSGAMEIREQL---------NLGGIVNAQNAQLSNCSDGAAQLESCGTA 57

Query: 147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH 205
             ++G    L +  ++ I +  L GK + + F A+ C  C+     ++  Y   K   + 
Sbjct: 58  PDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYK---DS 114

Query: 206 CFEVVLVSTDRDHKEFDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIG 259
              V+ V T     E     ++    A   I Y    D         +  +  PA  LI 
Sbjct: 115 GLAVIGVHTPEYAFEKVPG-NVAKGAANLGISYPIALDN-NYATWTNYRNRYWPAEYLID 172

Query: 260 PDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPREVKDVKHEHE 314
             G             +G   +  TE+ + ++     K G  LP+       +  
Sbjct: 173 ATGTVRHI-------KFGEGDYNVTETLVRQL-LNDAKPGVKLPQPSSTTTPDLT 219

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 22/120 (18%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
             I+++ + G  + L+F A WCP C      L  +  + +        V+ +        
Sbjct: 28  EVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYRE-----ISVIAIDFWTAEAL 82

Query: 221 FDLNHSIMPWLAIPYEDRARQ-----------------DLCRIFNIKGIPALVLIGPDGK 263
             L  +   +      +  R+                  L   FN++ I  +V++     
Sbjct: 83  KALGLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSN 142

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix} Length = 165

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
            + L++ GG  + L+F A WC  C      L +L +  R    E+ VI I F   E    
Sbjct: 29  VISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR----EISVIAIDFWTAEALKA 84

Query: 94  EHFKSSDGTLIE--EDLIGLIEDYG 116
                      +  E     I +YG
Sbjct: 85  LGLNKPGYPPPDTPEMFRKFIANYG 109

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 21/146 (14%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           + ++I +S+L GK + L F   WC PC+     +   Y   K   +   E+V V+     
Sbjct: 15  NGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFK---SQGVEIVAVNVGESK 71

Query: 219 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISL 275
                F +    + +  +   D   + +   +++  +P   LI P+GK +         +
Sbjct: 72  IAVHNF-MKSYGVNFPVVLDTD---RQVLDAYDVSPLPTTFLINPEGKVVKV-------V 120

Query: 276 YGAKAFPFTESRIAEIETALKKEGDA 301
            G      TES I +    +K    +
Sbjct: 121 TG----TMTESMIHDYMNLIKPGETS 142

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 4/92 (4%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
           ++ LS   GK + L F   WC PCK   P +   Y   +++G  +E++ ++    +    
Sbjct: 18  RIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVH 75

Query: 94  EHFKSSDGTL-IEEDLIGLI-EDYGADAYPFT 123
              KS      +  D    + + Y     P T
Sbjct: 76  NFMKSYGVNFPVVLDTDRQVLDAYDVSPLPTT 107

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 60.4 bits (147), Expect = 2e-11
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 7/105 (6%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
                ++++  GK + + F A WCP CR     +  +             V+ V+ ++  
Sbjct: 30  SGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFP---KGDLVVLAVNVEKRF 86

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
            E     + + +      D     + + +    +P   ++   G 
Sbjct: 87  PEK-YRRAPVSFNF--LSDA-TGQVQQRYGANRLPDTFIVDRKGI 127

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15} Length = 158

 Score = 49.3 bits (118), Expect = 2e-07
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              L+   GK + + F A+WC  C+   P + +L  +       L V+ ++ +       
Sbjct: 33  NKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKY 90

Query: 94  EHFKSSDGTLIEEDLIGLIEDYGADAYPFT----RKRREELKAI----DDSKRQGGKLEQ 145
                S   L +     + + YGA+  P T    RK     +       D+ +    L+ 
Sbjct: 91  RRAPVSFNFLSDAT-GQVQQRYGANRLPDTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKS 149

Query: 146 LLAIEGR 152
           L      
Sbjct: 150 LEGHHHH 156

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 59.8 bits (145), Expect = 4e-11
 Identities = 18/119 (15%), Positives = 47/119 (39%), Gaps = 19/119 (15%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTS-QLIEVYNELKTTANHCFEVVLVSTDRD 217
           +H  ++  +L GK + +      CP C +    Q  +++  +        +V+ + +  +
Sbjct: 19  NHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMID---ESQVQVIGLHSVFE 75

Query: 218 H-------------KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
           H              EF +   +   + +P E +      + + ++G P+++L    G+
Sbjct: 76  HHDVMTPEALKVFIDEFGIKFPVA--VDMPREGQRIPSTMKKYRLEGTPSIILADRKGR 132

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum} Length = 160

 Score = 45.2 bits (107), Expect = 4e-06
 Identities = 15/105 (14%), Positives = 31/105 (29%), Gaps = 17/105 (16%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFT-PQLVQLYDTLRTRGTELEVIFIS---FDHDE 89
            +      GK + +      C  C     PQ  +++  +      ++VI +      HD 
Sbjct: 22  GLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDV 79

Query: 90  NG------FEEHFKSS-----DGTLIEEDLIGLIEDYGADAYPFT 123
                   F + F        D     + +   ++ Y  +  P  
Sbjct: 80  MTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPSI 124

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 59.6 bits (145), Expect = 4e-11
 Identities = 32/165 (19%), Positives = 65/165 (39%), Gaps = 27/165 (16%)

Query: 147 LAIEGR---DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT 202
           +++E     D+ L + +   + +S+L G+ + + F A WCPPCR     ++ +   +   
Sbjct: 1   MSLEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMA-- 58

Query: 203 ANHCFEVVLVSTDRDHKEFDLNHSIMPWLA---IPYE---DRARQDLCRIFNIKGIPALV 256
               F ++ VS D   K      ++  +            D A + + +++   G+P   
Sbjct: 59  -GKPFRMLCVSIDEGGKV-----AVEEFFRKTGFTLPVLLD-ADKRVGKLYGTTGVPETF 111

Query: 257 LIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA 301
           +I   G  +         + GA  +   E  IA +   L K  + 
Sbjct: 112 VIDRHGVILKK-------VVGAMEWDHPEV-IAFLNNELSKAREG 148

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15} Length = 154

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
            V LS   G+ + + F A WC PC+   P +++L   +  +     ++ +S D       
Sbjct: 20  VVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAV 77

Query: 94  EHFKSSDG----TLIEEDLIGLIEDYGADAYPFT 123
           E F    G     L++ D   + + YG    P T
Sbjct: 78  EEFFRKTGFTLPVLLDADK-RVGKLYGTTGVPET 110

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 59.3 bits (144), Expect = 6e-11
 Identities = 17/120 (14%), Positives = 37/120 (30%), Gaps = 6/120 (5%)

Query: 147 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHC 206
           +++   +    +D+   ++  L      +   A WC PCR     + + Y   K      
Sbjct: 1   MSLSADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQK---KGS 57

Query: 207 FEVVLVSTDRDH--KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
            ++V ++ D       F     +  P       +           +  +P  V+  P   
Sbjct: 58  VDMVGIALDTSDNIGNFLKQTPVSYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCG 117

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B} Length = 151

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
          E    +      L S       +   A WC PC+   P + + Y   +     ++++ I+
Sbjct: 7  ELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIA 64

Query: 85 FDHDEN 90
           D  +N
Sbjct: 65 LDTSDN 70

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 59.3 bits (144), Expect = 7e-11
 Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 7/109 (6%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D +  + + L GK   + F A WCPPCRS    +++V        +  F  V ++ +   
Sbjct: 23  DGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWA---SRGFTFVGIAVNEQL 79

Query: 219 ---KEFDLNHSI-MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
              K +     I  P +    E     +      I GIP   +I   G 
Sbjct: 80  PNVKNYMKTQGIIYPVMMATPELIRAFNGYIDGGITGIPTSFVIDASGN 128

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} Length = 165

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD 86
            ++  GK    +S  GK   + F A WC PC++  P +VQ+  T  +RG     + I+ +
Sbjct: 19  GVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVN 76

Query: 87  HDENG---FEEHFKSS-----DGTLIEEDLIGLIEDYGADAYPFT 123
                   + +              +         D G    P +
Sbjct: 77  EQLPNVKNYMKTQGIIYPVMMATPELIRAF-NGYIDGGITGIPTS 120

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 9/110 (8%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D +   +S+  GK + L F A WC  C +      E+  E     +    + +VS     
Sbjct: 11  DGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG---DDYVVLTVVSPGHKG 67

Query: 219 KE----FDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGK 263
           ++    F   +  + +  +P   D     L   + ++  P    I  +GK
Sbjct: 68  EQSEADFKNWYKGLDYKNLPVLVDP-SGKLLETYGVRSYPTQAFIDKEGK 116

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 7/96 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--G 91
              LS   GK + L F A+WC  C    P   ++          L V+      +++   
Sbjct: 14  TYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTVVSPGHKGEQSEAD 73

Query: 92  FEEHFKSSDGT----LIEEDLIGLIEDYGADAYPFT 123
           F+  +K  D      L++     L+E YG  +YP  
Sbjct: 74  FKNWYKGLDYKNLPVLVDPSGK-LLETYGVRSYPTQ 108

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 55.4 bits (134), Expect = 8e-10
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 12/108 (11%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
                  + L GK   L+F   WCP C +    L +V              V ++T  D 
Sbjct: 13  SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPA-----VTFVGIATRADV 67

Query: 219 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
              + F ++   + +  +   D     +   +N+   PA V    DG 
Sbjct: 68  GAMQSF-VSKYNLNFTNLNDAD---GVIWARYNVPWQPAFVFYRADGT 111

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 136

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 17/92 (18%), Positives = 26/92 (28%), Gaps = 6/92 (6%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
               +S  GK   L+F   WC  C    P L Q+          +  + I+   D    +
Sbjct: 16  PFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAA----ANPAVTFVGIATRADVGAMQ 71

Query: 94  EHFKSSDGTL-IEEDLIG-LIEDYGADAYPFT 123
                 +       D  G +   Y     P  
Sbjct: 72  SFVSKYNLNFTNLNDADGVIWARYNVPWQPAF 103

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 8/115 (6%)

Query: 156 LSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELK---TTANHCFEVVLV 212
           L  +  +I +S+   + + L     WC PCRS +  L  ++ EL+           V+ +
Sbjct: 45  LMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGI 104

Query: 213 STDRDHKE----FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
           +     ++    F  ++ +  + +I                  IP  +++    +
Sbjct: 105 NVRDYSRDIAQDFVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHR 158

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum} Length = 183

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 28  LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTE----LEVIF 82
            L  +G  + LS    + + L     WC PC++ +  L  +++ L+  G        V+ 
Sbjct: 44  SLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLG 103

Query: 83  ISFD 86
           I+  
Sbjct: 104 INVR 107

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 18/147 (12%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D +++T+S L GK + L F A WC  CR     + +     K   N  F ++ +  D   
Sbjct: 22  DGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWL-KHKDNADFALIGIDRDEPL 80

Query: 219 ---KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGKTISTNGKEMI 273
                F    + + +           D+   + ++  GI   VLI  +GK +     ++ 
Sbjct: 81  EKVLAF-AKSTGVTYPLGLDPGA---DIFAKYALRDAGITRNVLIDREGKIV-----KLT 131

Query: 274 SLYGAKAFPFTESRIAEIETALKKEGD 300
            LY  + F        +I   LK+   
Sbjct: 132 RLYNEEEFASLV---QQINEMLKEGHH 155

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 34 KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE 89
          +V LSS  GK + L F+A+WC  C+   P + +          +  +I I  D   
Sbjct: 25 QVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL 80

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A Length = 148

 Score = 51.9 bits (125), Expect = 2e-08
 Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 12/109 (11%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE 220
                  +  K   ++F +  C  C+    Q+ E  ++ +        VV V   R   +
Sbjct: 20  EVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ----LNVVAVHMPRSEDD 75

Query: 221 FDLNHSIMPWLA---IPY---EDRARQDLCRIFNIKGIPALVLIGPDGK 263
            D    I    A   I      D     L   F  + +PA  +    G+
Sbjct: 76  LDPG-KIKETAAEHDITQPIFVDS-DHALTDAFENEYVPAYYVFDKTGQ 122

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 3e-08
 Identities = 55/386 (14%), Positives = 107/386 (27%), Gaps = 122/386 (31%)

Query: 3   RDNDQSKFIDSSDFL-TVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFT 61
            + D     D  D   ++L+ E ++ ++  +  V                          
Sbjct: 31  DNFD---CKDVQDMPKSILSKEEIDHIIMSKDAVS------------------------- 62

Query: 62  PQLVQLYDTLRTRGTELEVIFISFDHDEN-GF---EEHFKSSDGTLIEEDLIGLIEDYGA 117
              ++L+ TL ++  E+   F+      N  F       +    +++    I   +    
Sbjct: 63  -GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 118 DAYPFTR---KRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELA--GKT 172
           D   F +    R +    +    RQ   L +L           R  + + +  +   GKT
Sbjct: 122 DNQVFAKYNVSRLQPYLKL----RQ--ALLEL-----------RPAKNVLIDGVLGSGKT 164

Query: 173 I-------------GLYFGAHWCP--PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD 217
                          + F   W     C S    ++E+  +L       +++    T R 
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEMLQKL------LYQIDPNWTSRS 217

Query: 218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA--LVLIGPDG------------- 262
               ++   I            + +L R+   K      LVL                  
Sbjct: 218 DHSSNIKLRI---------HSIQAELRRLLKSKPYENCLLVL---LNVQNAKAWNAFNLS 265

Query: 263 -KT-ISTNGKEMI-SLYGAKAF---------PFTESRIAEI-ETALKKEGDALPREVKDV 309
            K  ++T  K++   L  A              T   +  +    L      LPREV   
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 310 KHEHELKLDMAKAYVCDCCKMRGRFW 335
              +  +L +    + D        W
Sbjct: 326 ---NPRRLSIIAESIRD-GLATWDNW 347

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 22/112 (19%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS---TDRD 217
                  L GK   L+F A WCP C+     + +V              V V+       
Sbjct: 16  HDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE-----VTFVGVAGLDQVPA 70

Query: 218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 269
            +EF   + +  +  +   D     +   F +   PA   + P G      G
Sbjct: 71  MQEFVNKYPVKTFTQLADTD---GSVWANFGVTQQPAYAFVDPHGNVDVVRG 119

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A Length = 136

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 7/93 (7%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
                S  GK   L+F A WC  C+   P + Q+         E+  + ++        +
Sbjct: 17  DFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAA----SHPEVTFVGVAGLDQVPAMQ 72

Query: 94  EHFKSSDGTL--IEEDLIG-LIEDYGADAYPFT 123
           E              D  G +  ++G    P  
Sbjct: 73  EFVNKYPVKTFTQLADTDGSVWANFGVTQQPAY 105

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 50.1 bits (120), Expect = 9e-08
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 8/110 (7%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D+R  +V     K   + F A WCP C S   Q  +   + K        ++ V++    
Sbjct: 27  DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAK---FSSANLITVASPGFL 83

Query: 219 KEFDLNHSIMPWLAIPYEDR-----ARQDLCRIFNIKGIPALVLIGPDGK 263
            E         +  + Y            + +  NI   P+  LIG DG 
Sbjct: 84  HEKKDGEFQKWYAGLNYPKLPVVTDNGGTIAQNLNISVYPSWALIGKDGD 133

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A Length = 164

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 11/99 (11%), Positives = 30/99 (30%), Gaps = 12/99 (12%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----D 88
              +     K   + F A+WC  C +   Q  +     +       +I ++         
Sbjct: 30  PASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKK 87

Query: 89  ENGFEEHFKSSDGT----LIEEDLIGLIEDYGADAYPFT 123
           +  F++ +   +      + +     + ++     YP  
Sbjct: 88  DGEFQKWYAGLNYPKLPVVTDNGG-TIAQNLNISVYPSW 125

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 19/100 (19%), Positives = 40/100 (40%), Gaps = 13/100 (13%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 229
           G+   L+F   WCPPC+    Q    Y+      +   ++V V+     +       +  
Sbjct: 34  GQKTILHFWTSWCPPCKKELPQFQSFYDAHP---SDSVKLVTVNLVNSEQNQQ---VVED 87

Query: 230 WLA---IPYE---DRARQDLCRIFNIKGIPALVLIGPDGK 263
           ++    + +    D  + +L + ++I  IP   L+   G+
Sbjct: 88  FIKANKLTFPIVLDS-KGELMKEYHIITIPTSFLLNEKGE 126

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} Length = 145

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 21/115 (18%), Positives = 45/115 (39%), Gaps = 19/115 (16%)

Query: 15  DFLTVLASEGVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR 74
            F  +   EG +  +  +G+            L F  +WC PCK   PQ    YD   + 
Sbjct: 17  VF-LMKTIEGEDISIPNKGQK---------TILHFWTSWCPPCKKELPQFQSFYDAHPSD 66

Query: 75  GTELEVIFISFDHDENGFE--EHFKSSDG----TLIEEDLIGLIEDYGADAYPFT 123
              ++++ ++  + E   +  E F  ++      +++     L+++Y     P +
Sbjct: 67  S--VKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGE-LMKEYHIITIPTS 118

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A Length = 241

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 38/232 (16%), Positives = 68/232 (29%), Gaps = 58/232 (25%)

Query: 49  FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDL 108
           F A WC  CK F P+  ++ + L+    +  +     D                      
Sbjct: 39  FYAPWCGHCKQFAPEYEKIANILK--DKDPPIPVAKIDATSAS----------------- 79

Query: 109 IGLIEDYGADAYP----FTRKRREE------LKAIDDSKRQGGKLEQLLAIEGRDYVLSR 158
             L   +    YP      + +  +       + I    R+  +            VL++
Sbjct: 80  -VLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQ-PDWTPPPEVTLVLTK 137

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           ++    V++     I + F A WC  C+    +  +   EL         + L   D   
Sbjct: 138 ENFDEVVND--ADIILVEFYAPWCGHCKKLAPEYEKAAKELS---KRSPPIPLAKVDAT- 191

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 270
                               A  DL + F++ G P L +    G+    NG 
Sbjct: 192 --------------------AETDLAKRFDVSGYPTLKIF-RKGRPYDYNGP 222

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa} Length = 133

 Score = 47.2 bits (112), Expect = 5e-07
 Identities = 28/99 (28%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 228
             K   L FGA+WC  CR+    L     +        FEVV +    D   FD N  + 
Sbjct: 28  THKPTLLVFGANWCTDCRALDKSLRN--QKNTALIAKHFEVVKI----DVGNFDRNLELS 81

Query: 229 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
                P                GIPA+V++  DGK   T
Sbjct: 82  QAYGDP-------------IQDGIPAVVVVNSDGKVRYT 107

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae} Length = 154

 Score = 47.6 bits (113), Expect = 6e-07
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 23/128 (17%)

Query: 170 GKTIGLYF-GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM 228
            K IGL+F G+ WC  C     Q+++  +E K  A       +V  D   K         
Sbjct: 47  HKPIGLFFTGSDWCMWCIKMQDQILQ-SSEFKHFAGVHL--HMVEVDFPQKNHQ------ 97

Query: 229 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRI 288
                  + +  Q+L   + + G P LV I  +GK ++  G E     G  A+      +
Sbjct: 98  ----PEEQRQKNQELKAQYKVTGFPELVFIDAEGKQLARMGFEP---GGGAAY------V 144

Query: 289 AEIETALK 296
           +++++ALK
Sbjct: 145 SKVKSALK 152

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1 Length = 118

 Score = 45.7 bits (108), Expect = 1e-06
 Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 29/117 (24%)

Query: 161 RKITVSEL-----AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD 215
              TV          +T   + G   CP CR F   L  V  E K        +  ++++
Sbjct: 15  EVTTVVRAQEALDKKETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINSE 68

Query: 216 RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEM 272
              +  DL                 Q     + I  +P  V I  DG+        M
Sbjct: 69  EPSQLNDL-----------------QAFRSRYGIPTVPGFVHIT-DGQINVRCDSSM 107

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A Length = 164

 Score = 45.1 bits (106), Expect = 5e-06
 Identities = 22/142 (15%), Positives = 48/142 (33%), Gaps = 28/142 (19%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 229
           G  + +     WC  C+     L   + E    +      V+V+ + + +  D + S   
Sbjct: 46  GLPLMVIIHKSWCGACK----ALKPKFAESTEISELSHNFVMVNLEDEEEPKDEDFSP-- 99

Query: 230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 289
                             +   IP ++ + P GK       E+I+  G  ++ +      
Sbjct: 100 ------------------DGGYIPRILFLDPSGKVHP----EIINENGNPSYKYFYVSAE 137

Query: 290 EIETALKKEGDALPREVKDVKH 311
           ++   +K+  + L  +    KH
Sbjct: 138 QVVQGMKEAQERLTGDAFRKKH 159

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A Length = 134

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 27/100 (27%)

Query: 170 GKTIGLYFGAHWCPPCRSF---TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS 226
           GK + L   A WC  C+ F   T    +V   L        + VL+  +           
Sbjct: 31  GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-------DTVLLQANVTA-------- 75

Query: 227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 266
                     D     L +  N+ G+P ++     G+   
Sbjct: 76  ---------NDAQDVALLKHLNVLGLPTILFFDGQGQEHP 106

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens} Length = 126

 Score = 43.2 bits (102), Expect = 1e-05
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 25/91 (27%)

Query: 177 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 236
           F    CP C     +L  V  E +   N    +     + +                   
Sbjct: 33  FKTDTCPYCVEMQKELSYVSKEREGKFN----IYYARLEEE------------------- 69

Query: 237 DRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
                DL   ++   +P  V +  +G     
Sbjct: 70  --KNIDLAYKYDANIVPTTVFLDKEGNKFYV 98

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 16/118 (13%)

Query: 17  LTVLASEGVEF----LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL 71
           +++    G       LL  +G+ V  ++     + +F+ A+WC  CK   P L ++    
Sbjct: 1   MSLAVKPGEPLPDFLLLDPKGQPVTPATVSKPAVIVFW-ASWCTVCKAEFPGLHRVA--- 56

Query: 72  RTRGTELEVIFISFDHDENGFEEHFKSSDG-----TLIEEDLIG-LIEDYGADAYPFT 123
              G    VI            E +  +          + D    +   +     P+T
Sbjct: 57  EETGVPFYVISREPRDTREVVLE-YMKTYPRFIPLLASDRDRPHEVAARFKVLGQPWT 113

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus} Length = 154

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 11/107 (10%)

Query: 161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-- 218
           + +T + ++   + + F A WC  C++    L  V  E        F V+          
Sbjct: 22  QPVTPATVSKPAV-IVFWASWCTVCKAEFPGLHRVAEETGVP----FYVISREPRDTREV 76

Query: 219 -KEF-DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
             E+       +P LA   +      +   F + G P   ++  +GK
Sbjct: 77  VLEYMKTYPRFIPLLASDRDRPHE--VAARFKVLGQPWTFVVDREGK 121

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343} Length = 172

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 12/105 (11%)

Query: 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE-------F 221
             K + L F  + C  CR     +           N     VL++   D+K         
Sbjct: 46  HNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKTPLTEPVKI 102

Query: 222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS 266
             N +      +  +    Q     F     P  VLI  +G  ++
Sbjct: 103 MENGTERTLRTVGDKWSYLQR--VKFGANAQPFYVLIDNEGNPLN 145

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} PDB: 1xbs_A Length = 149

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 19/102 (18%), Positives = 32/102 (31%), Gaps = 35/102 (34%)

Query: 177 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE 236
           FG    P C     QL ++ ++  +  +    + LV  D+                    
Sbjct: 30  FGRDEDPVCL----QLDDILSKTSSDLSKMAAIYLVDVDQT------------------- 66

Query: 237 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGA 278
                   + F+I  IP+ V           NG+ M   YG+
Sbjct: 67  ----AVYTQYFDISYIPSTVFF--------FNGQHMKVDYGS 96

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A Length = 229

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 33/232 (14%), Positives = 60/232 (25%), Gaps = 55/232 (23%)

Query: 44  TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL 103
           +I LF  A  C  C+T    L +  + +     + ++    +    +             
Sbjct: 24  SIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHK------------ 71

Query: 104 IEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGK-----LEQLLAIEGRDYVLSR 158
                    E YG D  P      ++   I       G      +  +  +  R   LS 
Sbjct: 72  ------EETEKYGVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKPQLSE 125

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
              ++ +  +        F    C  C S      +         N      ++    D 
Sbjct: 126 KTLEL-LQVVDIPIEIWVFVTTSCGYCPSAAVMAWDFALA-----NDYITSKVI----DA 175

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGK 270
            E                    QDL   F + G+P +V+   +       G 
Sbjct: 176 SEN-------------------QDLAEQFQVVGVPKIVI---NKGVAEFVGA 205

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A Length = 117

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          L     K + + F A WC PCKT  P   +L +       + + IF+  D D+ 
Sbjct: 28 LEQHKNKLVVVDFFATWCGPCKTIAPLFKELSE-------KYDAIFVKVDVDKL 74

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum} Length = 133

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
           SS    +I + F A WC+PC           +          V  +  D D +
Sbjct: 35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLN-------YYYVTLVDIDVDIH 81

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus} Length = 130

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 27/115 (23%)

Query: 169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHS 226
            G+ + +YF +  CP C+   +    V +   +       F V  VS D           
Sbjct: 18  HGRMVMVYFHSEHCPYCQQMNT---FVLSDPGVSRLLEARFVVASVSVDTP--------- 65

Query: 227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 281
                         Q+L R + + G P  V + P        G+ +        F
Sbjct: 66  ------------EGQELARRYRVPGTPTFVFLVPKAGAWEEVGR-LFGSRPRAEF 107

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A Length = 361

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 34/237 (14%), Positives = 59/237 (24%), Gaps = 45/237 (18%)

Query: 39  SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS 98
               KT  L F                   ++ +      +++FI  D D    +   + 
Sbjct: 132 GGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKG-----KILFIFIDSDHTDNQRILEF 186

Query: 99  SDGTLIEEDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSR 158
                 E   + LI                  + I +   +   LE  +        L  
Sbjct: 187 FGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHR--FLEGKIKPHLMSQELPE 244

Query: 159 DHRKITVSELAGKT-----------IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
           D  K  V  L GK            + + F A WC  C+    QL  ++++L  T     
Sbjct: 245 DWDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCK----QLAPIWDKLGETYKDHE 300

Query: 208 EVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT 264
            +V+   D                       +  +      +   P L         
Sbjct: 301 NIVIAKMD-----------------------STANEVEAVKVHSFPTLKFFPASADR 334

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ... Length = 105

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          L + G K + + FSA WC PCK   P    L +          VIF+  D D+ 
Sbjct: 15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS------NVIFLEVDVDDC 62

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1 Length = 107

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          LS  G +   + F+   C PC    P    + +         + +F+  D  + 
Sbjct: 16 LSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP------QAVFLEVDVHQC 63

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 26/223 (11%), Positives = 54/223 (24%), Gaps = 55/223 (24%)

Query: 49  FSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDL 108
           F A W  P +   P+L +    L       ++   + D   +                  
Sbjct: 462 FFAPWSPPSRALLPELRKASTLLYG-----QLKVGTLDCTIHE----------------- 499

Query: 109 IGLIEDYGADAYPFTRKRREELKAID-DSKRQGGKLEQLLAIEGRDYVLSRD---HRKIT 164
            GL   Y   AYP T     +    + +      ++ + +       V+S       ++ 
Sbjct: 500 -GLCNMYNIQAYP-TTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELV 557

Query: 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224
                 +   + F + W  P +    +   +   L         + + S D         
Sbjct: 558 KQRKHDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL------INVGSVDCGQY----- 606

Query: 225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
                              C   N++  P +            
Sbjct: 607 ----------------HSFCTQENVQRYPEIRFYPQKSSKAYQ 633

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C* Length = 116

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          L + G K + + FSA WC P K   P    L +          VIF+  D D+ 
Sbjct: 26 LDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS------NVIFLEVDVDDC 73

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae} Length = 112

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          G K I L+F  +W  PCK        +++ +    +   V F+S D DEN
Sbjct: 20 GDKLIVLYFHTSWAEPCKALKQ----VFEAISNEPSNSNVSFLSIDADEN 65

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus} Length = 105

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 15/118 (12%), Positives = 28/118 (23%), Gaps = 36/118 (30%)

Query: 175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP 234
           L+     C  C     ++  V             V  +                      
Sbjct: 23  LFIKTENCGVCDVMLRKVNYVLENYN-------YVEKIEILLQDM--------------- 60

Query: 235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE 292
                 Q++   + +   P ++L          NGKE++      +    E  I   E
Sbjct: 61  ------QEIAGRYAVFTGPTVLLF--------YNGKEILRESRFISLENLERTIQLFE 104

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica} Length = 104

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN 90
          ++   G+ I + F A WC PC+   P++  L   +       EV F   D D+N
Sbjct: 14 INENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP------EVEFAKVDVDQN 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.94
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.89
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.89
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	99.89
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.89
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.88
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.88
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.88
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.87
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.87
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.87
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.86
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.86
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.86
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.86
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.86
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.85
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.85
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.85
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.85
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.85
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	99.85
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.85
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.84
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.84
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	99.84
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.84
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.84
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.84
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.84
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.83
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.83
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.82
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.82
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.82
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.82
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.82
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.82
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.82
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.82
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.82
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.81
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.81
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.81
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.81
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	99.81
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.81
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.81
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.81
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.81
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.69
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.8
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.8
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.8
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.8
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.8
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.8
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.8
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.8
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.8
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.79
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.79
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.79
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.79
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.79
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.79
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.79
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.79
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.79
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.79
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.79
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.78
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.66
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.78
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.78
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.78
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.78
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.78
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.78
3me7_A	170	Putative uncharacterized protein; electron transfe	99.78
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.78
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.78
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.77
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.77
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.77
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.77
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.77
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.77
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.77
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.77
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.76
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.76
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.76
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.76
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.76
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.76
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.75
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.75
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.75
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.74
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.74
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.74
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.74
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.73
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.72
1v5n_A	89	PDI-like hypothetical protein AT1G60420; DC1 domai	99.72
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.71
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.71
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.7
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.69
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.69
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.65
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.64
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.64
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.63
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.62
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.61
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	99.6
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	99.59
2lrt_A	152	Uncharacterized protein; structural genomics, thio	99.59
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.58
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.55
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	99.55
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	99.55
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	99.55
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.55
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.55
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	99.55
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.55
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.54
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.54
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.54
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.54
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.53
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.53
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	99.53
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	99.53
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.53
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.53
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	99.52
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.52
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	99.52
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.52
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	99.51
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	99.51
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.51
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.51
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	99.5
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.5
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.5
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.5
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	99.5
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.5
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	99.5
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.49
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	99.49
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.49
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	99.49
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	99.49
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.48
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.48
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.48
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.47
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.47
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.47
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.47
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	99.47
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.47
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	99.47
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.47
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	99.47
3raz_A	151	Thioredoxin-related protein; structural genomics,	99.47
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.46
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.46
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.46
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.46
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.46
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	99.46
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	99.19
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	99.45
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	99.45
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	99.45
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	99.45
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.45
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.45
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	99.17
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.45
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.44
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.44
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.44
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.44
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.44
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.44
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	99.44
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.44
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	99.44
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	99.43
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.43
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.43
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.43
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.43
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.43
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	99.43
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	99.43
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.42
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.42
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.42
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.41
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.41
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.41
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	99.41
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	99.41
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	99.41
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.41
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.41
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	99.4
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.4
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.4
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	99.4
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.4
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	99.4
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.4
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.4
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.4
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	99.4
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.4
4evm_A	138	Thioredoxin family protein; structural genomics, n	99.39
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.39
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.39
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	99.38
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	99.38
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	99.38
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	99.37
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	99.37
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	99.37
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.37
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	99.37
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.37
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.37
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.37
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.36
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	99.36
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.36
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	99.35
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	99.35
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.35
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	99.34
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	99.34
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	99.34
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	99.34
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	99.34
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	99.34
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	99.33
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	99.33
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.33
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.33
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	99.33
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	99.32
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	99.32
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	99.0
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	99.32
3ira_A	173	Conserved protein; methanosarcina mazei,structural	99.32
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	99.32
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.31
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.31
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	99.3
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	99.3
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	99.3
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	99.3
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	99.29
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.28
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	99.28
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	99.28
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.28
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	99.28
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	99.27
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	99.27
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.27
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.26
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.26
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	99.26
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	99.26
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.26
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.25
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.25
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	99.25
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.25
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.24
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	99.24
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	99.24
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.24
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	99.23
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	99.23
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	99.23
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	99.23
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.23
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.21
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	99.21
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.21
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.21
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	99.21
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.21
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	99.2
2l57_A	126	Uncharacterized protein; structural genomics, unkn	99.2
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.2
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.2
3me7_A	170	Putative uncharacterized protein; electron transfe	99.2
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.2
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.82
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.19
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.19
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.19
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	99.19
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.18
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.18
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	99.18
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.17
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.17
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	99.17
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	99.16
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	99.16
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	99.16
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.16
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.15
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	99.15
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	99.15
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	99.15
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	99.15
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	99.15
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	99.14
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.14
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	99.14
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	99.14
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	99.14
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	99.14
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.13
2kuc_A	130	Putative disulphide-isomerase; structural genomics	99.13
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	99.13
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.13
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	99.13
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	99.13
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	99.13
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	99.13
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	99.13
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	99.12
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	99.12
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	99.12
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	99.12
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.12
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.12
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	99.11
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	98.7
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	99.1
2qsi_A	137	Putative hydrogenase expression/formation protein;	99.1
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	99.1
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	99.1
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	99.1
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	99.1
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	99.09
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	99.09
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	99.09
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	99.09
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	99.09
1mek_A	120	Protein disulfide isomerase; electron transport, r	99.09
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	99.08
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	99.08
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	99.08
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	99.08
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	99.08
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	99.07
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.07
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	99.07
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	99.06
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	99.06
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.06
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	99.06
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	99.06
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	99.06
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	99.06
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	99.06
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	99.05
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.05
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	99.04
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	99.04
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	99.04
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.04
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	99.04
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	99.04
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	99.04
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	99.04
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	99.03
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	99.03
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	99.02
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	99.02
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.02
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	99.01
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	99.01
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	99.01
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	98.99
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	98.99
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	98.98
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	98.98
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.97
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	98.97
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	98.97
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	98.96
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	98.96
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	98.96
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	98.95
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	98.95
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	98.94
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	98.94
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.93
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	98.93
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.92
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	98.91
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	98.9
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.87
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	98.87
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.86
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	98.85
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	98.85
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	98.35
3ira_A	173	Conserved protein; methanosarcina mazei,structural	98.84
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.84
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	98.83
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.82
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	98.81
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	98.81
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	98.81
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	98.81
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.81
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	98.78
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.77
4f9z_D	227	Endoplasmic reticulum resident protein 27; thiored	98.74
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	98.73
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.72
2c0g_A	248	ERP29 homolog, windbeutel protein; PDI-dbeta, PDI,	98.71
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	98.7
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.69
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	98.68
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.63
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	98.62
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	98.62
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	98.61
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	98.56
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.54
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.53
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	98.53
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.5
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	98.47
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	98.42
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	98.42
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	98.41
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	98.41
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.4
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	98.37
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	98.35
2qc7_A	240	ERP31, ERP28, endoplasmic reticulum protein ERP29;	98.31
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.29
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	98.28
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	98.27
1ttz_A	87	Conserved hypothetical protein; structural genomic	98.25
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	98.22
1z6m_A	175	Conserved hypothetical protein; structural genomic	98.18
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	98.08
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	98.06
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	98.06
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	98.04
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	98.04
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	98.03
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.98
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.94
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	97.91
1kte_A	105	Thioltransferase; redox-active center, electron tr	97.87
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	97.81
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	97.78
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.77
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.73
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.71
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	97.7
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	97.67
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	97.61
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	97.57
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.53
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	97.51
3hz8_A	193	Thiol:disulfide interchange protein DSBA; thiol-ox	97.51
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	97.49
1z6m_A	175	Conserved hypothetical protein; structural genomic	97.48
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	97.47
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	97.41
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	97.39
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	97.33
3l9v_A	189	Putative thiol-disulfide isomerase or thioredoxin;	97.32
1un2_A	197	DSBA, thiol-disulfide interchange protein; disulfi	97.32
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	97.31
2ec4_A	178	FAS-associated factor 1; UAS domain, protein FAF1,	97.27
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	97.26
2h8l_A	252	Protein disulfide-isomerase A3; thioredoxin-like f	97.22
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	97.2

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.94  E-value=6.4e-27  Score=206.12  Aligned_cols=194  Identities=18%  Similarity=0.320  Sum_probs=131.3

Q ss_pred             cCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccc
Q 018266           29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEED  107 (358)
Q Consensus        29 ~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~  107 (358)
                      ...+++ +...-.+||+++|+|||+||++|+.++|.|.+++++++..+.++.++.|+++.+.                  
T Consensus        18 ~~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~------------------   79 (241)
T 3idv_A           18 LVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSAS------------------   79 (241)
T ss_dssp             EEECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCH------------------
T ss_pred             EEecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCH------------------
Confidence            334444 4444456899999999999999999999999999999887766788888887665                  


Q ss_pred             cceeeeccccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhc-------cCCceecCCCceeeecccCCcEEEEEEecc
Q 018266          108 LIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIE-------GRDYVLSRDHRKITVSELAGKTIGLYFGAH  180 (358)
Q Consensus       108 ~~~l~~~~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~  180 (358)
                        .++++|+|.++|+.......-...+.+......+...+...       .+......+++.+......+++++|+||++
T Consensus        80 --~l~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~a~  157 (241)
T 3idv_A           80 --VLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAP  157 (241)
T ss_dssp             --HHHHHTTCCSSSEEEEEETTEEEECCSCSCHHHHHHHHHHHHSTTCCCCCCSSEECCTTTHHHHHHHCSEEEEEEECT
T ss_pred             --HHHHhcCCCcCCEEEEEcCCCcccccCcccHHHHHHHHhhccCcccccccccceeccHHHHHHhhccCCeEEEEEECC
Confidence              45677777777753221110000011111112222222111       112222344444432223568999999999


Q ss_pred             CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECC
Q 018266          181 WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP  260 (358)
Q Consensus       181 wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~  260 (358)
                      ||++|+.+.|.+.+++++++. ...++.++.|.++..                       ..++++|+|.++|+++++ +
T Consensus       158 wC~~C~~~~p~~~~~a~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~~-~  212 (241)
T 3idv_A          158 WCGHCKKLAPEYEKAAKELSK-RSPPIPLAKVDATAE-----------------------TDLAKRFDVSGYPTLKIF-R  212 (241)
T ss_dssp             TCTGGGGTHHHHHHHHHHHHT-SSSCCCEEEEETTTC-----------------------HHHHHHTTCCSSSEEEEE-E
T ss_pred             CCHHHHHhHHHHHHHHHHHhc-cCCcEEEEEEECCCC-----------------------HHHHHHcCCcccCEEEEE-E
Confidence            999999999999999999974 234578888887764                       579999999999999999 4


Q ss_pred             CCcEEec
Q 018266          261 DGKTIST  267 (358)
Q Consensus       261 ~G~v~~~  267 (358)
                      +|+.+..
T Consensus       213 ~g~~~~~  219 (241)
T 3idv_A          213 KGRPYDY  219 (241)
T ss_dssp             TTEEEEC
T ss_pred             CCeEEEe
Confidence            6776543

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.89  E-value=7.1e-23  Score=165.72  Aligned_cols=136  Identities=38%  Similarity=0.641  Sum_probs=118.7

Q ss_pred             hhhccCC-cee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~-f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      ++..+|+ |.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++.  ..++.|++|++|.+.+.+.++
T Consensus         3 ~~~~~P~~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~~   80 (144)
T 1i5g_A            3 LKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDY   80 (144)
T ss_dssp             TTTSCSSCSEEEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred             hhhhCCCceEEEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHHH
Confidence            4678898 898 999999999999999999999999999999999999999999972  258999999999999999999


Q ss_pred             hhcCCccccccCc-hhHHHHHHHcCCCceeeEEEEC-CCCcEEecCcchhhhhcC-CCCCCCc
Q 018266          225 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLYG-AKAFPFT  284 (358)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~g-~~~~p~~  284 (358)
                      +..++|..+|+.. +....+++.|++.++|+++||| ++|+++.++++..+.... ...|||.
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~  143 (144)
T 1i5g_A           81 YAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWP  143 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCC
T ss_pred             HHhCCccccccCchHHHHHHHHHcCCCCCCEEEEEECCCCcEEeccchhhhhhCcccccCCCC
Confidence            9999999999876 5678899999999999999999 999999998766554443 3444543

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.89  E-value=3.3e-23  Score=171.90  Aligned_cols=137  Identities=32%  Similarity=0.692  Sum_probs=119.4

Q ss_pred             hhhhccCCc-ee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          146 LLAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f-~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      .+|..+|+| .+ +.+| .+++++++||++||+||++||++|+.++|.|.+++++|++  ..++.|++|++|.+.+.+.+
T Consensus        23 ~vG~~~P~f~~l~~~~g-~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~v~vv~v~~d~~~~~~~~   99 (165)
T 3s9f_A           23 GVAKHLGEALKLRKQAD-TADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHD--SKNFEIILASWDEEEDDFNA   99 (165)
T ss_dssp             HHHHHHHHTSCEEETTE-EECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHH
T ss_pred             hhcccCCcceeeecCCC-cccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhcc--CCCeEEEEEecCCCHHHHHH
Confidence            468889998 67 8889 9999999999999999999999999999999999999973  24899999999999999999


Q ss_pred             hhhcCCccccccCchhH-HHHHHHcCCCceeeEEEECCC-CcEEecCcchhhh-hcCCCCCCCch
Q 018266          224 NHSIMPWLAIPYEDRAR-QDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS-LYGAKAFPFTE  285 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~-~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~-~~g~~~~p~~~  285 (358)
                      ++..++|..+|+..+.. ..+++.|+|.++|+++|||++ |+|++++++.... ......|||..
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~lid~~~G~iv~~~~~~~~~~d~~~~~fpw~~  164 (165)
T 3s9f_A          100 YYAKMPWLSIPFANRNIVEALTKKYSVESIPTLIGLNADTGDTVTTRARHALTQDPMGEQFPWRD  164 (165)
T ss_dssp             HHTTCSSEECCTTCHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTCCC
T ss_pred             HHHhCCCcccccCchhHHHHHHHHcCCCCCCEEEEEeCCCCEEEecccHHHHhhCcccccCCCCC
Confidence            99999999999876544 899999999999999999998 9999998755544 33455667653

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=99.89  E-value=3.1e-23  Score=180.86  Aligned_cols=181  Identities=14%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             cCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           39 SCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        39 ~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ..++++++++||++ ||++|+++.|.|+++++. .   ..+.++.|+++..+.                  .+++++|||
T Consensus        19 ~~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~---~~v~~~~vd~~~~~~------------------~~~~~~~~v   76 (226)
T 1a8l_A           19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T---DKLSYEIVDFDTPEG------------------KELAKRYRI   76 (226)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C---TTEEEEEEETTSHHH------------------HHHHHHTTC
T ss_pred             hcCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C---CceEEEEEeCCCccc------------------HHHHHHcCC
Confidence            35678899999999 999999999999998854 2   238888888875212                  256777888


Q ss_pred             CCCCcchHhHHH--HHhhhhhhhccchhhHhhhh----ccCCceecCCCceee-ecccCCcEEEEEEeccCCcccHhhHH
Q 018266          118 DAYPFTRKRREE--LKAIDDSKRQGGKLEQLLAI----EGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTS  190 (358)
Q Consensus       118 ~~~P~~~~~~~~--~~~~~~~~~~~~~l~~~~~~----~~p~f~l~~~g~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~~  190 (358)
                      .++|+.......  ....+.+......+..++..    ..+..  .++.+.+. +....++.++|.||++||++|+.+.|
T Consensus        77 ~~~Pt~~~~~~g~~~~~~~~G~~~~~~l~~~l~~~l~~~~~~~--~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p  154 (226)
T 1a8l_A           77 DRAPATTITQDGKDFGVRYFGLPAGHEFAAFLEDIVDVSREET--NLMDETKQAIRNIDQDVRILVFVTPTCPYCPLAVR  154 (226)
T ss_dssp             CSSSEEEEEETTBCCSEEEESCCCTTHHHHHHHHHHHHHHTCC--CCCHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHH
T ss_pred             CcCceEEEEcCCceeeEEEeccCcHHHHHHHHHHHHhhcCCCC--CCCHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHH
Confidence            888864322110  00011111111222222111    11111  11211111 12233455599999999999999999


Q ss_pred             HHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          191 QLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       191 ~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.+++++++.....++.++.|+++..                       ..++++|+|.++|+++++ ++|+.+.+
T Consensus       155 ~~~~l~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  207 (226)
T 1a8l_A          155 MAHKFAIENTKAGKGKILGDMVEAIEY-----------------------PEWADQYNVMAVPKIVIQ-VNGEDRVE  207 (226)
T ss_dssp             HHHHHHHHHHHTTCCCEEEEEEEGGGC-----------------------HHHHHHTTCCSSCEEEEE-ETTEEEEE
T ss_pred             HHHHHHHhcccccCCcEEEEEEEcccC-----------------------HHHHHhCCCcccCeEEEE-eCCceeEE
Confidence            999999998721124678888877643                       678999999999998888 68887655

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.89  E-value=1.9e-22  Score=163.59  Aligned_cols=136  Identities=35%  Similarity=0.664  Sum_probs=117.8

Q ss_pred             hhhccCC-cee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRD-YVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~-f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      ++..+|+ |.+ +.+| .+++++++||+++|+||++||++|+.++|.|.++++++++  ..++.|++|++|.+.+.+.++
T Consensus         4 ~~~~~P~~f~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~--~~~~~vv~v~~d~~~~~~~~~   80 (146)
T 1o8x_A            4 LDKYLPGIEKLRRGDG-EVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAGY   80 (146)
T ss_dssp             GGGTSTTCCEEEETTE-EEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHHH
T ss_pred             hHhhCCCceEEEcCCC-CCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhh--cCCeEEEEEeCCCCHHHHHHH
Confidence            4778899 888 8999 9999999999999999999999999999999999999972  258999999999999999999


Q ss_pred             hhcCCccccccCc-hhHHHHHHHcCCCceeeEEEEC-CCCcEEecCcchhhhhcC-CCCCCCch
Q 018266          225 HSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLYG-AKAFPFTE  285 (358)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~g-~~~~p~~~  285 (358)
                      +..++|..+|+.. +....+++.|++.++|+++++| ++|+++++.++..+...+ ...+||.+
T Consensus        81 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~w~~  144 (146)
T 1o8x_A           81 FAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  144 (146)
T ss_dssp             HTTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             HHHCCceeeccchhhHHHHHHHHhCCCCCCEEEEEECCCCeEEEecchhHHhhCCccccCCCCC
Confidence            9999999999876 5678899999999999999999 899999998765544333 34555543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.88  E-value=3.2e-22  Score=161.68  Aligned_cols=135  Identities=36%  Similarity=0.664  Sum_probs=117.1

Q ss_pred             hhhhccCCc-ee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          146 LLAIEGRDY-VL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f-~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      .+|..+|+| .+ +.+| .+++++++||+++|+||++||++|+.++|.|.+++++++.  ..++.|++|++|.+.+.+.+
T Consensus         3 ~~g~~~p~~~~l~~~~g-~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~--~~~~~vv~i~~d~~~~~~~~   79 (144)
T 1o73_A            3 GLAKYLPGATNLLSKSG-EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHD   79 (144)
T ss_dssp             GGGGTSCTTCCBBCTTS-CBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHH
T ss_pred             chhhhCccceEeecCCC-cCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhcc--CCCEEEEEEeCCCCHHHHHH
Confidence            357889997 77 8999 9999999999999999999999999999999999999972  26899999999999999999


Q ss_pred             hhhcCCccccccCc-hhHHHHHHHcCCCceeeEEEEC-CCCcEEecCcchhhhhcC-CCCCCC
Q 018266          224 NHSIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIG-PDGKTISTNGKEMISLYG-AKAFPF  283 (358)
Q Consensus       224 ~~~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid-~~G~v~~~~g~~~~~~~g-~~~~p~  283 (358)
                      ++..++|..+|+.. +....+++.|++.++|+++++| ++|+++++.++..+.... ...|||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~~G~i~~~~~~~~~~~~~~~~~~~W  142 (144)
T 1o73_A           80 YYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             HHTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             HHHhCCceEeeccchhHHHHHHHHcCCCCCCEEEEEECCCCeEEecchhhHHhhCCCccCCCC
Confidence            99999999999875 5577899999999999999999 899999998765554333 344454

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.88  E-value=1.4e-22  Score=163.57  Aligned_cols=120  Identities=12%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHH---HHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      ..+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+   +++++++   .++.|++|+.|.+.+.
T Consensus         5 ~~~G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~---~~~~vi~i~~d~~~~~   81 (142)
T 3eur_A            5 NRLGTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAA---KKLKVLSIYPDEELDE   81 (142)
T ss_dssp             TCTTSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHT---TSEEEEEEECSSCHHH
T ss_pred             hcCCCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhcc---CCeEEEEEEcCCCHHH
Confidence            457899999999 99999999999999999999999999999999999999   9999986   7899999999999999


Q ss_pred             HHHhhhcCCccccccCchh--HHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMPWLAIPYEDRA--RQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~--~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +.+++..++. .++...+.  ...+.+.|++.++|+++|||++|+|++++
T Consensus        82 ~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (142)
T 3eur_A           82 WKKHRNDFAK-EWTNGYDKELVIKNKNLYDLRAIPTLYLLDKNKTVLLKD  130 (142)
T ss_dssp             HHHHGGGSCT-TSEEEECTTCHHHHTTCSCCTTCSEEEEECTTCBEEEEE
T ss_pred             HHHHHHhccc-ccccccCccchhhhhhhcCCCcCCeEEEECCCCcEEecC
Confidence            9999987763 23333332  23478899999999999999999999884

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.88  E-value=3.9e-22  Score=160.79  Aligned_cols=117  Identities=17%  Similarity=0.325  Sum_probs=104.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHH---HHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE---VYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~---l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+   +++++++   .++.|++|++|.+.+.+.
T Consensus         3 ~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~---~~~~~v~v~~d~~~~~~~   79 (142)
T 3ewl_A            3 AGMKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVEN---GTLRVLAIYPDENREEWA   79 (142)
T ss_dssp             TTSBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHH---TSEEEEEEECSSCHHHHH
T ss_pred             CCCcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhcc---CCeEEEEEEecCCHHHHH
Confidence            5889999999 99999999999999999999999999999999999998   9999986   789999999999999999


Q ss_pred             HhhhcCCccccccCchhHHHHHH--HcCCCceeeEEEECCCCcEEec
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCR--IFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~--~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++...+++ .+|...+....+..  .|++.++|++++||++|+++++
T Consensus        80 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  125 (142)
T 3ewl_A           80 TKAVYMPQ-GWIVGWNKAGDIRTRQLYDIRATPTIYLLDGRKRVILK  125 (142)
T ss_dssp             HHHTTSCT-TCEEEECTTCHHHHTTCSCCCSSSEEEEECTTCBEEEC
T ss_pred             HHHHHcCC-CcceeeCCccchhhHHHcCCCCCCeEEEECCCCCEEec
Confidence            99887763 55665565566665  9999999999999999999975

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.87  E-value=5.5e-22  Score=161.71  Aligned_cols=139  Identities=19%  Similarity=0.363  Sum_probs=116.3

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  225 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  225 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++.   .++.|++|++|.+.+.+.++.
T Consensus         2 ~G~~~p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~v~~d~~~~~~~~~~   78 (151)
T 2f9s_A            2 EGSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFM   78 (151)
T ss_dssp             CCEECCCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHH
T ss_pred             CCCcCCcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHHH
Confidence            4778999999 899999999999999999999999999999999999999999985   689999999998888888888


Q ss_pred             hcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          226 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      ..+++ .+|...+....+.+.|++.++|+++++|++|+++.+.       .|...       .++|.+.+++.+....
T Consensus        79 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~G~~~-------~~~l~~~l~~ll~~~~  141 (151)
T 2f9s_A           79 KSYGV-NFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKVV-------TGTMT-------ESMIHDYMNLIKPGET  141 (151)
T ss_dssp             HHHTC-CSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEEE-------ESCCC-------HHHHHHHHHHHSCC--
T ss_pred             HHcCC-CceEEECCchHHHHhcCCCCCCeEEEECCCCcEEEEE-------eCCCC-------HHHHHHHHHHHHhhhh
Confidence            86653 4666666677899999999999999999999999872       34322       4566666777665444

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.87  E-value=3.1e-22  Score=161.76  Aligned_cols=119  Identities=16%  Similarity=0.123  Sum_probs=99.5

Q ss_pred             hhhccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          147 LAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       147 ~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      +|..+|+|.++.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .++.|++|++|.+.+.+.+++.
T Consensus         9 ~G~~~P~f~l~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~~~   85 (143)
T 4fo5_A            9 PGDLAPRIEFLGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGP---DKIAMCSISMDEKESIFTETVK   85 (143)
T ss_dssp             TTSBCCCCCC-----CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCT---TTEEEEEEECCSCHHHHHHHHH
T ss_pred             CcccCCceEEcCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCc---CCEEEEEEEccCCHHHHHHHHH
Confidence            5889999999889999999999999999999999999999999999999999975   6899999999999888999888


Q ss_pred             cC--Cc-cccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          227 IM--PW-LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       227 ~~--~~-~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      .+  +| ..+....+....+++.|++.++|+++|||++|+|++++
T Consensus        86 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (143)
T 4fo5_A           86 IDKLDLSTQFHEGLGKESELYKKYDLRKGFKNFLINDEGVIIAAN  130 (143)
T ss_dssp             HHTCCGGGEEECTTGGGSHHHHHTTGGGCCCEEEECTTSBEEEES
T ss_pred             HhCCCCceeeecccccchHHHHHcCCCCCCcEEEECCCCEEEEcc
Confidence            54  34 22333333356899999999999999999999999884

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.87  E-value=6e-21  Score=155.81  Aligned_cols=118  Identities=21%  Similarity=0.306  Sum_probs=104.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  225 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  225 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .++.|++|++|.+.+.+.+++
T Consensus         5 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~   81 (152)
T 2lrn_A            5 TGSVAPAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKD---KGFTIYGVSTDRREEDWKKAI   81 (152)
T ss_dssp             TTEECCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTT---TTEEEEEEECCSCHHHHHHHH
T ss_pred             CCCcCCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHH
Confidence            5788999999 899999999999999999999999999999999999999999985   679999999999888888888


Q ss_pred             hcCCccccccCchh---HHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          226 SIMPWLAIPYEDRA---RQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       226 ~~~~~~~~~~~~~~---~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..++ +.+|...+.   ...+++.|++.++|++++||++|+++.+.
T Consensus        82 ~~~~-~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  126 (152)
T 2lrn_A           82 EEDK-SYWNQVLLQKDDVKDVLESYCIVGFPHIILVDPEGKIVAKE  126 (152)
T ss_dssp             HHHT-CCSEEEEECHHHHHHHHHHTTCCSSCEEEEECTTSEEEEEC
T ss_pred             HHhC-CCCeEEecccchhHHHHHHhCCCcCCeEEEECCCCeEEEee
Confidence            7543 234444443   68899999999999999999999999873

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.86  E-value=5.3e-21  Score=155.75  Aligned_cols=119  Identities=23%  Similarity=0.347  Sum_probs=104.6

Q ss_pred             hhhccCCcee-cCCCceeeec--ccCCcEEEEEEeccCCcc--cHhhHHHHHHHHHHh-hcccCCceEEEEEeCCCCHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPP--CRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~--~~~~k~vlv~F~a~wC~~--C~~~~~~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      +|.++|+|.+ +.+|+.++++  +++||+++|+||++||++  |+.++|.|.+++++| ++   .++.|++|++|.+.+.
T Consensus         7 ~G~~~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~~   83 (150)
T 3fw2_A            7 IGKYAPFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKN---KYIGMLGISLDVDKQQ   83 (150)
T ss_dssp             TTSBCCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTC---SSEEEEEEECCSCHHH
T ss_pred             CCCcCCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccC---CCeEEEEEEcCCCHHH
Confidence            5889999999 9999999999  999999999999999999  999999999999999 64   6799999999999889


Q ss_pred             HHHhhhcCC--ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +.+++..++  |..+....+....+.+.|++.++|+++|||++|+++.+.
T Consensus        84 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A           84 WKDAIKRDTLDWEQVCDFGGLNSEVAKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHHHHHTTCCSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHHHhCCCceEEEcCcccchHHHHHcCCCccCeEEEECCCCEEEEcc
Confidence            999988554  333333333367899999999999999999999999884

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.86  E-value=9.2e-22  Score=159.42  Aligned_cols=120  Identities=13%  Similarity=0.172  Sum_probs=106.7

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      .+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++   .++.|++|++|.+.+.+.++
T Consensus         6 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~   82 (148)
T 3hcz_A            6 LLGKKAPNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRA---KGIQVYAANIERKDEEWLKF   82 (148)
T ss_dssp             CTTSBCCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGG---GTEEEEEEECCSSSHHHHHH
T ss_pred             CCCCcCCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCEEEEEEEecCCHHHHHHH
Confidence            35889999999 899999999999999999999999999999999999999999986   57999999999888889999


Q ss_pred             hhcCCccccccCchhHHH--HHHHcCCCceeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRARQD--LCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~--l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ...+++..++...+....  +.+.|++.++|+++++|++|+++.+.
T Consensus        83 ~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~  128 (148)
T 3hcz_A           83 IRSKKIGGWLNVRDSKNHTDFKITYDIYATPVLYVLDKNKVIIAKR  128 (148)
T ss_dssp             HHHHTCTTSEEEECTTCCCCHHHHHCCCSSCEEEEECTTCBEEEES
T ss_pred             HHHcCCCCceEEeccccchhHHHhcCcCCCCEEEEECCCCcEEEec
Confidence            887765545555554555  89999999999999999999999873

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.86  E-value=3.2e-21  Score=157.61  Aligned_cols=119  Identities=18%  Similarity=0.318  Sum_probs=103.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  225 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  225 (358)
                      .|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .++.|++|++|...+.+.++.
T Consensus        11 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~vv~i~~d~~~~~~~~~~   87 (152)
T 2lrt_A           11 KEASIIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYAS---QGFEIYQISLDGDEHFWKTSA   87 (152)
T ss_dssp             CTTCSCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECSCCHHHHHHHH
T ss_pred             cCCCCCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhcc---CCeEEEEEEccCCHHHHHHHH
Confidence            4678999999 999999999999999999999999999999999999999999986   679999999999988888887


Q ss_pred             hcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          226 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..++|..+.........+.+.|++.++|+++|||++|+|+.+.
T Consensus        88 ~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  130 (152)
T 2lrt_A           88 DNLPWVCVRDANGAYSSYISLYNVTNLPSVFLVNRNNELSARG  130 (152)
T ss_dssp             TTCSSEEEECSSGGGCHHHHHHTCCSCSEEEEEETTTEEEEET
T ss_pred             hCCCceEEECCCCcchHHHHHcCcccCceEEEECCCCeEEEec
Confidence            7665544333333333589999999999999999999999883

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.86  E-value=3.7e-21  Score=156.80  Aligned_cols=119  Identities=24%  Similarity=0.398  Sum_probs=106.0

Q ss_pred             hhhccC-Ccee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p-~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++| +|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++   .++.+++|++|.+.+.+.++
T Consensus         5 ~G~~~p~~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~   81 (152)
T 2lja_A            5 SGNPSAASFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAG---KDIHFVSLSCDKNKKAWENM   81 (152)
T ss_dssp             TTCCCSSSCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTT---SSEEEEEEECCSCHHHHHHH
T ss_pred             cCCCCCcccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhcc---CCeEEEEEEccCcHHHHHHH
Confidence            578899 9998 899999999999999999999999999999999999999999975   68999999999988888888


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +...++...++..+....+.+.|++.++|+++++|++|+++.+.
T Consensus        82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  125 (152)
T 2lja_A           82 VTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDGKIISAN  125 (152)
T ss_dssp             HHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTSCEEESS
T ss_pred             HHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCCeEEEcc
Confidence            88665544555555567899999999999999999999999873

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.86  E-value=6.3e-21  Score=155.44  Aligned_cols=140  Identities=21%  Similarity=0.339  Sum_probs=117.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  225 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  225 (358)
                      +|.++|+|.+ + +|+.+++++++||+++|+||++||++|+.++|.|.+++++++.   .++.|++|++|.+.+.+.+++
T Consensus         5 ~G~~~P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~v~v~~d~~~~~~~~~~   80 (152)
T 3gl3_A            5 KGDKAPDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKA---KGFQVVAVNLDAKTGDAMKFL   80 (152)
T ss_dssp             TTSBCCCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSHHHHHHHH
T ss_pred             CCCcCCceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhc---CCeEEEEEECCCCHHHHHHHH
Confidence            5789999999 7 9999999999999999999999999999999999999999986   679999999999988898888


Q ss_pred             hcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          226 SIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      ..+++ .++...+....+.+.|++.++|++++||++|+++.+.       .|..     ....++|.+.+++.....+
T Consensus        81 ~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~-----~~~~~~l~~~i~~~~~~~~  145 (152)
T 3gl3_A           81 AQVPA-EFTVAFDPKGQTPRLYGVKGMPTSFLIDRNGKVLLQH-------VGFR-----PADKEALEQQILAALGGNE  145 (152)
T ss_dssp             HHSCC-CSEEEECTTCHHHHHTTCCSSSEEEEECTTSBEEEEE-------ESCC-----TTTHHHHHHHHHHHTC---
T ss_pred             HHcCC-CCceeECCcchhHHHcCCCCCCeEEEECCCCCEEEEE-------ccCC-----CcCHHHHHHHHHHHHcccc
Confidence            87764 5666666677899999999999999999999999873       3422     2335677777777655444

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.85  E-value=3.3e-21  Score=158.23  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=99.7

Q ss_pred             hhccCCcee-c--CCCceeeecccCCcEEEEEEeccCCcccHhh-HHHHHHHHHHhhcccCCceEEEEEeCC------CC
Q 018266          148 AIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------RD  217 (358)
Q Consensus       148 ~~~~p~f~l-~--~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d------~~  217 (358)
                      |..+|+|.+ +  .+|+.+++++++||+++|+||++||++|+.+ +|.|.+++++|++   .++.|++|++|      .+
T Consensus         3 g~~aP~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~~   79 (158)
T 3eyt_A            3 AMKAPELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPE---DKVAVLGLHTVFEHHEAMT   79 (158)
T ss_dssp             CEECCCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGSC
T ss_pred             CCcCCCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCc---CCEEEEEEEecccccccCC
Confidence            678999998 5  3789999999999999999999999999997 9999999999985   68999999985      46


Q ss_pred             HHHHHHhhhcCCccccccCchhHH-----HHHHHcCCCceeeEEEECCCCcEEec
Q 018266          218 HKEFDLNHSIMPWLAIPYEDRARQ-----DLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.+.+++..++. .+|...+...     .+++.|++.++|+++|||++|+++.+
T Consensus        80 ~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  133 (158)
T 3eyt_A           80 PISLKAFLHEYRI-KFPVGVDQPGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH  133 (158)
T ss_dssp             HHHHHHHHHHTTC-CSCEEEECCCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred             HHHHHHHHHHcCC-CceEEEcCccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence            7788888887653 3455444333     68999999999999999999999987

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.85  E-value=2.4e-21  Score=159.91  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=105.2

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcE-EEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKT-IGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~-vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      +|.++|+|.+ +.+|+.+++++++||+ ++|+|| ++||++|+.++|.|.+++++|++   .++.|++|++| +.+.+.+
T Consensus         4 ~G~~~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d-~~~~~~~   79 (161)
T 3drn_A            4 VGDKAPLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKD---YDVVVIGVSSD-DINSHKR   79 (161)
T ss_dssp             TTSBCCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHT---TCEEEEEEESC-CHHHHHH
T ss_pred             CCCcCCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEeCC-CHHHHHH
Confidence            5889999999 9999999999999997 999999 99999999999999999999986   67999999998 5778888


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCCCc----eeeEEEECCCCcEEec
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNIKG----IPALVLIGPDGKTIST  267 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~----~P~~~lid~~G~v~~~  267 (358)
                      +...+++ .+|+..|....+++.|++.+    +|+++|||++|+|+++
T Consensus        80 ~~~~~~~-~~~~~~d~~~~~~~~~~v~~~~~~~P~~~lid~~G~i~~~  126 (161)
T 3drn_A           80 FKEKYKL-PFILVSDPDKKIRELYGAKGFILPARITFVIDKKGIIRHI  126 (161)
T ss_dssp             HHHHTTC-CSEEEECTTSHHHHHTTCCCSSSCCCEEEEECTTSBEEEE
T ss_pred             HHHHhCC-CceEEECCcHHHHHHcCCCCcCcccceEEEECCCCEEEEE
Confidence            8887663 47777777789999999999    9999999999999987

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.85  E-value=7.6e-22  Score=202.14  Aligned_cols=202  Identities=13%  Similarity=0.139  Sum_probs=138.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .++.++|.||+|||+||+.+.|.|+++++.+++.   +.++.++++...                    .++++|++.+|
T Consensus       562 ~~~~~lv~F~ap~C~~c~~~~p~~~~lA~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~v~~~  618 (780)
T 3apo_A          562 HDEVWMVDFYSPWSHPSQVLMPEWKRMARTLTGL---INVGSVDCGQYH--------------------SFCTQENVQRY  618 (780)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTTH--------------------HHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCC---eEEEEEECcchH--------------------HHHHHcCCCCC
Confidence            3678999999999999999999999999999864   667777766544                    46788888888


Q ss_pred             CcchHhHHHHH-----hhhhh-hhccchhhHhhhhccCCceecCCCceee-ecccCCcEEEEEEeccCCcccHhhHHHHH
Q 018266          121 PFTRKRREELK-----AIDDS-KRQGGKLEQLLAIEGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       121 P~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~~p~f~l~~~g~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~~~l~  193 (358)
                      |+.......-.     ..+.+ .+....+..++....+.....++++.+. .-.-.+++++|+||++||++|+.+.|.+.
T Consensus       619 Pti~~~~~~~~~~~~~~~y~g~~~~~~~l~~fi~~~~~~~v~~l~~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~  698 (780)
T 3apo_A          619 PEIRFYPQKSSKAYQYHSYNGWNRDAYSLRSWGLGFLPQASIDLTPQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPEFE  698 (780)
T ss_dssp             SEEEEECCCSSSCCSCEECCCSCCSHHHHHHHHHTTSCCCSEEECHHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHHH
T ss_pred             CeEEEEcCCCcCccchhhcCCCCCCHHHHHHHHhhhcccccccCCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHH
Confidence            86432211100     11222 3344556666665555433344444442 11224789999999999999999999999


Q ss_pred             HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhh
Q 018266          194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMI  273 (358)
Q Consensus       194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~  273 (358)
                      +++++++    .++.++.|.++..                       ..++++|+|.++|+++++ ++|+++.+      
T Consensus       699 ~la~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~~Pt~~~~-~~g~~~~~------  744 (780)
T 3apo_A          699 LLARMIK----GKVRAGKVDCQAY-----------------------PQTCQKAGIKAYPSVKLY-QYERAKKS------  744 (780)
T ss_dssp             HHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTTCCSSSEEEEE-EEETTTTE------
T ss_pred             HHHHHhc----CCceEEEEECCCC-----------------------HHHHHhcCCCcCCEEEEE-cCCCcccc------
Confidence            9999997    4688888888764                       578999999999999999 77776543      


Q ss_pred             hhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          274 SLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       274 ~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                       ..|..--..+   .++|.+.+++.++..+
T Consensus       745 -~~G~~~g~~~---~~~l~~~l~~~l~~~~  770 (780)
T 3apo_A          745 -IWEEQINSRD---AKTIAALIYGKLETLQ  770 (780)
T ss_dssp             -EEEEEECCCC---HHHHHHHHHHHTTC--
T ss_pred             -ccCcccCCcC---HHHHHHHHHHHHHHhh
Confidence             2231100111   4566666776665544

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.85  E-value=1.4e-20  Score=152.36  Aligned_cols=118  Identities=19%  Similarity=0.336  Sum_probs=103.8

Q ss_pred             hhhccCCcee-cCCCceeeec--ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHh-hcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVS--ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNEL-KTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~--~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~-~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      +|.++|+|.+ +.+|+.++++  +++||+++|+||++||++|+.++|.|.+++++| +.   .++.|++|++|.+.+.+.
T Consensus         7 ~g~~~p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~v~~d~~~~~~~   83 (148)
T 3fkf_A            7 VGKSAPYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKN---KNFAMLGISLDIDREAWE   83 (148)
T ss_dssp             TTSBCCCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTC---TTEEEEEEECCSCHHHHH
T ss_pred             CCCcCCCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---CCeEEEEEECCCCHHHHH
Confidence            5889999999 9999999999  999999999999999999999999999999999 64   679999999999998999


Q ss_pred             HhhhcCCccccccCch---hHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          223 LNHSIMPWLAIPYEDR---ARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~---~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ++...++. .++...+   ....+++.|++.++|+++++|++|+++.+.
T Consensus        84 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  131 (148)
T 3fkf_A           84 TAIKKDTL-SWDQVCDFTGLSSETAKQYAILTLPTNILLSPTGKILARD  131 (148)
T ss_dssp             HHHHHTTC-CSEEECCSCGGGCHHHHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHHHcCC-CceEEEccCCcchHHHHhcCCCCcCEEEEECCCCeEEEec
Confidence            98886553 3333333   367899999999999999999999999874

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.85  E-value=3.3e-21  Score=158.52  Aligned_cols=118  Identities=13%  Similarity=0.226  Sum_probs=101.9

Q ss_pred             hhhhccCCcee-c-CCCceeeecccCCcEEEEEEeccCCcccHhh-HHHHHHHHHHhhcccCCceEEEEEeCC------C
Q 018266          146 LLAIEGRDYVL-S-RDHRKITVSELAGKTIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTD------R  216 (358)
Q Consensus       146 ~~~~~~p~f~l-~-~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d------~  216 (358)
                      +.|.++|+|.+ + .+|+.+++++++||+++|+||++||++|+.+ +|.|.+++++|++   .++.|++|++|      .
T Consensus         4 ~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~---~~v~~v~v~~~~~~~~~~   80 (160)
T 3lor_A            4 LDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDE---SQVQVIGLHSVFEHHDVM   80 (160)
T ss_dssp             CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCT---TTEEEEEEECCCSCGGGS
T ss_pred             cCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCc---CCcEEEEEeccccccccC
Confidence            45788999998 5 7999999999999999999999999999995 9999999999985   67999999984      5


Q ss_pred             CHHHHHHhhhcCCccccccCchhHHH------HHHHcCCCceeeEEEECCCCcEEec
Q 018266          217 DHKEFDLNHSIMPWLAIPYEDRARQD------LCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +.+.+.++...++. .+|...+....      +.+.|++.++|+++|||++|+++.+
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  136 (160)
T 3lor_A           81 TPEALKVFIDEFGI-KFPVAVDMPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV  136 (160)
T ss_dssp             CHHHHHHHHHHTTC-CSCEEEECCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             CHHHHHHHHHHcCC-CCcEEECCccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence            77888888887653 35554444444      9999999999999999999999987

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=99.85  E-value=5.7e-22  Score=173.25  Aligned_cols=171  Identities=13%  Similarity=0.168  Sum_probs=110.4

Q ss_pred             CCCCEEEEEE----eCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           40 CGGKTICLFF----SANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        40 ~~gk~vlv~F----~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .++.++++.|    |+|||+||+.++|.|+++++++.+. ..+.++.|+++.+.                    +++++|
T Consensus        19 ~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~-~~v~~~~vd~~~~~--------------------~l~~~~   77 (229)
T 2ywm_A           19 FKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQ-DKIKLDIYSPFTHK--------------------EETEKY   77 (229)
T ss_dssp             CCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCT-TTEEEEEECTTTCH--------------------HHHHHT
T ss_pred             ccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCC-CceEEEEecCcccH--------------------HHHHHc
Confidence            4455565666    4999999999999999999888542 23778788777655                    578888


Q ss_pred             ccCCCCcchHhHHH-HHhhhhhhhccchhhHhhhh----ccCCceecCCCceee-ecccCCcEEEEEEeccCCcccHhhH
Q 018266          116 GADAYPFTRKRREE-LKAIDDSKRQGGKLEQLLAI----EGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFT  189 (358)
Q Consensus       116 gi~~~P~~~~~~~~-~~~~~~~~~~~~~l~~~~~~----~~p~f~l~~~g~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~  189 (358)
                      ||++||+....... ....+.+......+..++..    ..+..  .++.+.+. +....++.++++||++||++|+.+.
T Consensus        78 ~v~~~Ptl~~~~~~~~~~~~~G~~~~~~l~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~  155 (229)
T 2ywm_A           78 GVDRVPTIVIEGDKDYGIRYIGLPAGLEFTTLINGIFHVSQRKP--QLSEKTLELLQVVDIPIEIWVFVTTSCGYCPSAA  155 (229)
T ss_dssp             TCCBSSEEEEESSSCCCEEEESCCCTTHHHHHHHHHHHHHTTCC--SCCHHHHHHHTTCCSCEEEEEEECTTCTTHHHHH
T ss_pred             CCCcCcEEEEECCCcccceecCCccHHHHHHHHHHHHhccCCcc--CCCHHHHHHHHhcCCCeEEEEEECCCCcchHHHH
Confidence            88888864432110 00111122222222222211    11111  11111111 1123345668999999999999999


Q ss_pred             HHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          190 SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       190 ~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                      |.+.+++.++.     ++.++.|.++..                       ..++++|+|.++|++++   +|++
T Consensus       156 ~~~~~~~~~~~-----~v~~~~vd~~~~-----------------------~~l~~~~~v~~~Pt~~~---~G~~  199 (229)
T 2ywm_A          156 VMAWDFALAND-----YITSKVIDASEN-----------------------QDLAEQFQVVGVPKIVI---NKGV  199 (229)
T ss_dssp             HHHHHHHHHCT-----TEEEEEEEGGGC-----------------------HHHHHHTTCCSSSEEEE---GGGT
T ss_pred             HHHHHHHHHCC-----CeEEEEEECCCC-----------------------HHHHHHcCCcccCEEEE---CCEE
Confidence            99999988873     477777777653                       67899999999999988   6764

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.85  E-value=1.1e-21  Score=161.40  Aligned_cols=138  Identities=19%  Similarity=0.226  Sum_probs=105.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|++ +.+|+.+++++++||+++|+|| ++||++|..++|.|.+++++++.   .++.+++|+.|. .+...++
T Consensus         6 vG~~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~---~~~~~v~vs~d~-~~~~~~~   81 (157)
T 4g2e_A            6 IGELAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQ---VNAVVLGISVDP-PFSNKAF   81 (157)
T ss_dssp             TTSBCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGG---CSSEEEEEESSC-HHHHHHH
T ss_pred             CCCCCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccc---cCceEeeecccc-hhHHHHH
Confidence            5899999999 9999999999999999999999 99999999999999999999986   889999999984 5556666


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHH
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIET  293 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~  293 (358)
                      ...++ +.+|+..|....+++.||+.           ..|+++|||++|+|+++.       .+..  +..+...+++.+
T Consensus        82 ~~~~~-~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~-------~~~~--~~~~~~~~eil~  151 (157)
T 4g2e_A           82 KEHNK-LNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKW-------VSDD--PTKEPPYDEIEK  151 (157)
T ss_dssp             HHHTT-CCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEE-------EESS--TTCCCCHHHHHH
T ss_pred             HHHcC-CcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEE-------ECCC--CCCCCCHHHHHH
Confidence            66555 35777778888999999984           468999999999999873       2221  222333566666


Q ss_pred             HHHHh
Q 018266          294 ALKKE  298 (358)
Q Consensus       294 ~l~~~  298 (358)
                      .++.+
T Consensus       152 ~l~~L  156 (157)
T 4g2e_A          152 VVKSL  156 (157)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            66543

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.84  E-value=1.4e-20  Score=155.39  Aligned_cols=139  Identities=22%  Similarity=0.352  Sum_probs=110.4

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      ..|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++   .++.+++|++|.+.+.+.++
T Consensus         9 ~~g~~~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A            9 ARPTPAPSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWAS---RGFTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             CCCCBCCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTT---TTEEEEEEECSCCHHHHHHH
T ss_pred             cCCCCCCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCCCHHHHHHH
Confidence            35788999999 999999999999999999999999999999999999999999985   67999999999988888888


Q ss_pred             hhcCCccccccCchhHHHHHHHc------CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIF------NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~------~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      ...+++ .+|...+. ..+.+.|      ++.++|+++++|++|+++.+.       .|...       .+++.+.+++.
T Consensus        86 ~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~-------~g~~~-------~~~l~~~l~~~  149 (165)
T 3or5_A           86 MKTQGI-IYPVMMAT-PELIRAFNGYIDGGITGIPTSFVIDASGNVSGVI-------VGPRS-------KADFDRIVKMA  149 (165)
T ss_dssp             HHHHTC-CSCEEECC-HHHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEE-------CSCCC-------HHHHHHHHHHH
T ss_pred             HHHcCC-CCceEecC-HHHHHHHhhhhccCCCCCCeEEEECCCCcEEEEE-------cCCCC-------HHHHHHHHHHH
Confidence            875542 34443333 3677777      899999999999999999772       34322       44555556665


Q ss_pred             cCCCC
Q 018266          299 GDALP  303 (358)
Q Consensus       299 ~~~~~  303 (358)
                      +....
T Consensus       150 l~~~~  154 (165)
T 3or5_A          150 LGAKA  154 (165)
T ss_dssp             HC---
T ss_pred             Hhhhc
Confidence            55443

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.84  E-value=7.1e-21  Score=165.07  Aligned_cols=118  Identities=15%  Similarity=0.283  Sum_probs=105.6

Q ss_pred             hhhccCCcee-cCCCceeeecccCCc-EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CC
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RD  217 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~  217 (358)
                      +|.++|+|.+ +.+|+.+++++++|| +|||+||++||++|+.++|.|.+++++|++   .++.||+|++|       .+
T Consensus        34 ~G~~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Vs~d~~~~~~~d~  110 (218)
T 3u5r_E           34 LGTRAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAG---QGLAVVAINSNDAQAFPEET  110 (218)
T ss_dssp             TTCBCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTT---TTEEEEEEECSCTTTCGGGS
T ss_pred             CCCcCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccCC
Confidence            5889999999 999999999999999 599999999999999999999999999986   67999999997       56


Q ss_pred             HHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          218 HKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      .+.+.++...++ +.+|+..|....+++.|++.++|+++|||++|+|++++
T Consensus       111 ~~~~~~~~~~~~-~~~~~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~g  160 (218)
T 3u5r_E          111 LERVGAEVKAYG-YGFPYLKDASQSVAKAYGAACTPDFFLYDRERRLVYHG  160 (218)
T ss_dssp             HHHHHHHHHHHT-CCSCEEECTTCHHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred             HHHHHHHHHHhC-CCccEEECCccHHHHHcCCCCCCeEEEECCCCcEEEec
Confidence            677888877655 36677777778899999999999999999999999874

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=99.84  E-value=1.2e-20  Score=166.19  Aligned_cols=176  Identities=12%  Similarity=0.161  Sum_probs=114.2

Q ss_pred             CCEEEEEEeCCC--ChhhhhhhHHHHHHHHHHhc-CCCc-eEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           42 GKTICLFFSANW--CRPCKTFTPQLVQLYDTLRT-RGTE-LEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        42 gk~vlv~F~a~w--C~~C~~~~p~~~~~~~~l~~-~~~~-~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      +++|+|.||++|  |++|+.+.|.+.++++.... +|+. +.++.+++|.+.                    +++.+|||
T Consensus        25 ~~pv~v~~~~~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~--------------------~~~~~~gv   84 (243)
T 2hls_A           25 VNPVEVHVFLSKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDS--------------------DKFSEFKV   84 (243)
T ss_dssp             CSCEEEEEEECSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTH--------------------HHHHHTTC
T ss_pred             CCCEEEEEEeCCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCH--------------------HHHHhcCC
Confidence            478999999999  99999999999999987532 2211 666666666544                    46788888


Q ss_pred             CCCCcchHhHHHHHhhhhhhhccchhhHhhh----hccCCceecCCCcee-eecccCCcEEEEEEeccCCcccHhhHHHH
Q 018266          118 DAYPFTRKRREELKAIDDSKRQGGKLEQLLA----IEGRDYVLSRDHRKI-TVSELAGKTIGLYFGAHWCPPCRSFTSQL  192 (358)
Q Consensus       118 ~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~p~f~l~~~g~~~-~l~~~~~k~vlv~F~a~wC~~C~~~~~~l  192 (358)
                      .++|+.... .. ...+.+......+..++.    ...+...+  +.... .+.++.++++++.||++||++|+.+.|.|
T Consensus        85 ~~~Pt~~i~-~g-~~~~~G~~~~~~l~~fv~~~l~~~~~~~~l--~~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p~l  160 (243)
T 2hls_A           85 ERVPTVAFL-GG-EVRWTGIPAGEEIRALVEVIMRLSEDESGL--EDATKEALKSLKGRVHIETIITPSCPYCPYAVLLA  160 (243)
T ss_dssp             CSSSEEEET-TT-TEEEESCCCTTHHHHHHHHHHHHHTTCCCC--CHHHHHHHHHCCSCEEEEEEECSSCSSHHHHHHHH
T ss_pred             CcCCEEEEE-CC-ceeEcCCCcHHHHHHHHHHHHhccCCCCCC--CHHHHHHHHHcCCCcEEEEEECCCCCCcHHHHHHH
Confidence            888865433 11 111111111122222211    11111111  00000 12346688999999999999999999999


Q ss_pred             HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          193 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       193 ~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++++.+++.....++.+..|.++..                       ..++++|+|.++||+++   +|++++.
T Consensus       161 ~~la~~~~~~~~~~v~~~~vd~~~~-----------------------~~~~~~~~V~~vPt~~i---~G~~~~~  209 (243)
T 2hls_A          161 HMFAYEAWKQGNPVILSEAVEAYEN-----------------------PDIADKYGVMSVPSIAI---NGYLVFV  209 (243)
T ss_dssp             HHHHHHHHHTTCCCEEEEEEETTTC-----------------------HHHHHHTTCCSSSEEEE---TTEEEEE
T ss_pred             HHHHHHcccccCCcEEEEEEECccC-----------------------HHHHHHcCCeeeCeEEE---CCEEEEe
Confidence            9999998420114677777777653                       57888999999999988   7887643

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.84  E-value=1.4e-20  Score=153.62  Aligned_cols=118  Identities=20%  Similarity=0.434  Sum_probs=105.4

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~  223 (358)
                      .+|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++.   .++.|++|++|.+ .+.+.+
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~~   79 (154)
T 3kcm_A            3 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAG---KPFRMLCVSIDEGGKVAVEE   79 (154)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---SSEEEEEEECCTTHHHHHHH
T ss_pred             CCCCCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcc---CCeEEEEEEcCCcchHHHHH
Confidence            45889999999 999999999999999999999999999999999999999999985   6899999999987 677777


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +...+.+ .+|+..+....+.+.|++.++|++++||++|+++.+
T Consensus        80 ~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  122 (154)
T 3kcm_A           80 FFRKTGF-TLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKK  122 (154)
T ss_dssp             HHHHHCC-CCCEEECTTCHHHHHHTCCSBCEEEEECTTSBEEEE
T ss_pred             HHHHcCC-CeeEEecCchHHHHHhCCCCCCeEEEECCCCcEEEE
Confidence            7776543 456666777889999999999999999999999987

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.84  E-value=2.4e-20  Score=152.08  Aligned_cols=135  Identities=16%  Similarity=0.234  Sum_probs=103.8

Q ss_pred             ccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCC
Q 018266          150 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP  229 (358)
Q Consensus       150 ~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  229 (358)
                      ++|+|....+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+.   .++.|++|++|. .+.+.++...++
T Consensus         4 pa~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~-~~~~~~~~~~~~   79 (151)
T 3raz_A            4 SADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKK---GSVDMVGIALDT-SDNIGNFLKQTP   79 (151)
T ss_dssp             ---CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCT---TTEEEEEEESSC-HHHHHHHHHHSC
T ss_pred             CcchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhcc---CCeEEEEEECCC-hHHHHHHHHHcC
Confidence            4556665679999999999999999999999999999999999999999965   789999999974 567777777554


Q ss_pred             cccccc---CchhHHHHHHHcC--CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          230 WLAIPY---EDRARQDLCRIFN--IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       230 ~~~~~~---~~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      . .+|.   ..+....+.+.|+  +.++|+++|||++|+++.+.       .|...       .++|.+.+++..+.-+
T Consensus        80 ~-~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~~-------~~~l~~~l~~l~~~~~  143 (151)
T 3raz_A           80 V-SYPIWRYTGANSRNFMKTYGNTVGVLPFTVVEAPKCGYRQTI-------TGEVN-------EKSLTDAVKLAHSKCR  143 (151)
T ss_dssp             C-SSCEEEECCSCHHHHHHTTTCCSCCSSEEEEEETTTTEEEEC-------CSCCC-------HHHHHHHHHHHHTC--
T ss_pred             C-CCceEecCccchHHHHHHhCCccCCCCEEEEECCCCcEEEEE-------CCCCC-------HHHHHHHHHHHHHHhh
Confidence            2 3333   3344678999999  99999999999999999873       34332       4456666666655444

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.84  E-value=1e-20  Score=156.24  Aligned_cols=138  Identities=19%  Similarity=0.263  Sum_probs=114.1

Q ss_pred             hhhhccCCce--e-cCCCceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          146 LLAIEGRDYV--L-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       146 ~~~~~~p~f~--l-~~~g~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      .+|.++|+|.  + +.+|+++++++++||+++|+||+ +||++|..++|.|.+++++|++   .++.|++|++| +.+..
T Consensus         8 ~~G~~~P~f~~~l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d-~~~~~   83 (163)
T 3gkn_A            8 VLELPAATFDLPLSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDK---AGAKILGVSRD-SVKSH   83 (163)
T ss_dssp             CCCCCGGGGGCCEECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHH---TTCEEEEEESS-CHHHH
T ss_pred             ccCCcCCCccccccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHH---CCCEEEEEeCC-CHHHH
Confidence            4688999999  8 99999999999999999999998 9999999999999999999987   78999999998 66777


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCc------------eeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHH
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA  289 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~  289 (358)
                      .++...++ ..+|+..|....+.+.|++..            +|+++|||++|+|++..       .+.    ......+
T Consensus        84 ~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~-------~~~----~~~~~~~  151 (163)
T 3gkn_A           84 DNFCAKQG-FAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW-------RKV----KVAGHAD  151 (163)
T ss_dssp             HHHHHHHC-CSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEE-------CSC----CSTTHHH
T ss_pred             HHHHHHhC-CCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEE-------cCC----CcccCHH
Confidence            77777554 456666777789999999987            89999999999999872       111    1234466


Q ss_pred             HHHHHHHHhc
Q 018266          290 EIETALKKEG  299 (358)
Q Consensus       290 ~L~~~l~~~~  299 (358)
                      ++.+.++++.
T Consensus       152 ~il~~l~~l~  161 (163)
T 3gkn_A          152 AVLAALKAHA  161 (163)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            6666666654

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.84  E-value=2.5e-20  Score=148.51  Aligned_cols=114  Identities=22%  Similarity=0.371  Sum_probs=102.3

Q ss_pred             ccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe-----CCCCHHHHHH
Q 018266          150 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS-----TDRDHKEFDL  223 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~-----~d~~~~~~~~  223 (358)
                      ++|+|.+ +.+|+.+++++++||+++|+||++||++|+.+++.|.++++++.    .++.++.|.     .+.+.+.+.+
T Consensus         1 ~~p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~v~i~~~~~~~~~~~~~~~~   76 (138)
T 4evm_A            1 EVADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAG----DDYVVLTVVSPGHKGEQSEADFKN   76 (138)
T ss_dssp             CCCCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCT----TTEEEEEEECTTSTTCCCHHHHHH
T ss_pred             CCCcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhC----CCcEEEEEEcCCCCchhhHHHHHH
Confidence            4789999 99999999999999999999999999999999999999999865    678999994     4556788999


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +...+++..+|...+....+.+.|++.++|+++++|++|+++.+
T Consensus        77 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  120 (138)
T 4evm_A           77 WYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKT  120 (138)
T ss_dssp             HHTTCCCTTCCEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             HHhhcCCCCeeEEECcchHHHHHcCcccCCeEEEECCCCcEEEe
Confidence            99988876788777777899999999999999999999999987

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.83  E-value=1.9e-20  Score=152.75  Aligned_cols=119  Identities=21%  Similarity=0.286  Sum_probs=102.0

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-CHHHHH
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFD  222 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~  222 (358)
                      .++|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++++.   .++.|++|+.+. +.+.+.
T Consensus         2 ~~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~   78 (153)
T 2l5o_A            2 SLDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKN---KNFQVLAVAQPIDPIESVR   78 (153)
T ss_dssp             --CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGG---TTEEEEEEECTTSCHHHHH
T ss_pred             CCCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhcc---CCeEEEEEecCCCCHHHHH
Confidence            356889999999 899999999999999999999999999999999999999999986   689999999864 456777


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++...++. .++...+....+.+.|++.++|+++++|++|+++.+
T Consensus        79 ~~~~~~~~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~~~  122 (153)
T 2l5o_A           79 QYVKDYGL-PFTVMYDADKAVGQAFGTQVYPTSVLIGKKGEILKT  122 (153)
T ss_dssp             HHHHHTTC-CSEEEECSSCHHHHHHTCCSSSEEEEECSSSCCCEE
T ss_pred             HHHHHcCC-CceEEcCchHHHHHHcCCCccCeEEEECCCCcEEEE
Confidence            77776553 355555556789999999999999999999999876

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.83  E-value=1.2e-20  Score=158.03  Aligned_cols=116  Identities=19%  Similarity=0.218  Sum_probs=101.9

Q ss_pred             HhhhhccCCcee-cCCC--ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          145 QLLAIEGRDYVL-SRDH--RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g--~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      ..+|.++|+|.+ +.+|  +.+++++++||+++|+||++||++|+.++|.|.+++++       ++.|++|++|.+.+.+
T Consensus        30 ~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~vs~~d~~~~~  102 (176)
T 3kh7_A           30 ALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ-------GVVIYGINYKDDNAAA  102 (176)
T ss_dssp             TTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCEEEEEEESCCHHHH
T ss_pred             cccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC-------CCEEEEEeCCCCHHHH
Confidence            457999999999 8888  88999999999999999999999999999999988664       5899999999899999


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+++..+++.......+....+.+.|++.++|+++|||++|+|+++
T Consensus       103 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  148 (176)
T 3kh7_A          103 IKWLNELHNPYLLSISDADGTLGLDLGVYGAPETYLIDKQGIIRHK  148 (176)
T ss_dssp             HHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCEEEEECTTCBEEEE
T ss_pred             HHHHHHcCCCCceEEECCcchHHHHcCCCCCCeEEEECCCCeEEEE
Confidence            9999877654333445667789999999999999999999999987

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.82  E-value=6.4e-20  Score=146.08  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      +..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|.+.+.+.++..
T Consensus         2 ~~~~p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~   76 (136)
T 1zzo_A            2 VPAQLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVN   76 (136)
T ss_dssp             CCGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC-----CeEEEEEeCCCCHHHHHHHHH
Confidence            356889998 89999999999999999999999999999999999999999874     589999999999999999988


Q ss_pred             cCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .++...+|...+....+.+.|++.++|+++++|++|+++ +
T Consensus        77 ~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~~id~~g~i~-~  116 (136)
T 1zzo_A           77 KYPVKTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVD-V  116 (136)
T ss_dssp             HTTCTTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEE-E
T ss_pred             HcCCCceEEEEcCCcHHHHHcCCCCCceEEEECCCCCEE-E
Confidence            777546777667678899999999999999999999998 5

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.82  E-value=4.8e-20  Score=148.58  Aligned_cols=118  Identities=19%  Similarity=0.361  Sum_probs=103.5

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHH
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKE  220 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~  220 (358)
                      ..+|..+|+|.+ +.+|+.+++++ +||+++|+||++||++|+.++|.|.+++++++.   .++.|++|++|.   +.+.
T Consensus         9 ~~~g~~~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~~~~~~~   84 (145)
T 3erw_A            9 EKQPAVPAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPS---DSVKLVTVNLVNSEQNQQV   84 (145)
T ss_dssp             ---CCSCCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCC---SSEEEEEEECGGGSSCHHH
T ss_pred             ccCCCcCCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCC---CCEEEEEEEccCCcCCHHH
Confidence            346888999999 99999999999 999999999999999999999999999999975   689999999986   7788


Q ss_pred             HHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          221 FDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++...++ +.+|...+....+.+.|++.++|+++++|++|+++.+
T Consensus        85 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  130 (145)
T 3erw_A           85 VEDFIKANK-LTFPIVLDSKGELMKEYHIITIPTSFLLNEKGEIEKT  130 (145)
T ss_dssp             HHHHHHHTT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCCEEEE
T ss_pred             HHHHHHHcC-CceeEEEcCchhHHHhcCcCccCeEEEEcCCCcEEEE
Confidence            888887665 3566666667789999999999999999999999876

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.82  E-value=2.4e-19  Score=147.88  Aligned_cols=118  Identities=19%  Similarity=0.388  Sum_probs=99.1

Q ss_pred             ccCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhccc-CCceEEEEEeCCCC---HHHHHH
Q 018266          150 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTA-NHCFEVVLVSTDRD---HKEFDL  223 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~-~~~~~vv~v~~d~~---~~~~~~  223 (358)
                      .+|+|.+ +.+|+++++++++||+++|+||++||++ |+.++|.|.++++++++.. ..+++|++|++|..   .+.+.+
T Consensus         2 ~ap~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~   81 (164)
T 2ggt_A            2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIAN   81 (164)
T ss_dssp             CCCCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHH
T ss_pred             CCCCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHH
Confidence            4789998 9999999999999999999999999998 9999999999999997411 14899999999863   567777


Q ss_pred             hhhcCC--ccccccCchhHHHHHHHcCCCcee---------------eEEEECCCCcEEec
Q 018266          224 NHSIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST  267 (358)
Q Consensus       224 ~~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~  267 (358)
                      +...++  |..++...+....+++.|++..+|               +++|||++|+++.+
T Consensus        82 ~~~~~~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  142 (164)
T 2ggt_A           82 YVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  142 (164)
T ss_dssp             HHHTTCSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred             HHHHcCCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence            777554  433333356677899999999999               89999999999987

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.82  E-value=5.3e-20  Score=155.35  Aligned_cols=118  Identities=25%  Similarity=0.394  Sum_probs=104.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC-HHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD-HKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~-~~~~~~~  224 (358)
                      .|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+.   .++.|++|++|.+ .+.+.++
T Consensus        36 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~  112 (186)
T 1jfu_A           36 APLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKTF  112 (186)
T ss_dssp             SCCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHHH
T ss_pred             CCCcCCCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhcc---CCcEEEEEECCCCCHHHHHHH
Confidence            4788999999 999999999999999999999999999999999999999999975   7899999999965 4567777


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCC----ceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIK----GIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~----~~P~~~lid~~G~v~~~  267 (358)
                      ...++...+|+..+....+.+.|++.    ++|+++|||++|+|+.+
T Consensus       113 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~  159 (186)
T 1jfu_A          113 LKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  159 (186)
T ss_dssp             HHHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             HHHcCCCCCceEECCcchHHHHhccccccCCCCEEEEECCCCCEEEE
Confidence            77766555677667677888999885    89999999999999987

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.82  E-value=2.6e-21  Score=160.23  Aligned_cols=117  Identities=20%  Similarity=0.304  Sum_probs=101.6

Q ss_pred             hhhccCCcee-cCCCceeeeccc--CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~--~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      +|.++|+|++ +.+|++++++++  +||+++|+|| ++||++|..++|.|.+++++|++   .++.+++|+.| +.+...
T Consensus         7 vG~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~---~~v~vv~is~d-~~~~~~   82 (164)
T 4gqc_A            7 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVD-SPWCLK   82 (164)
T ss_dssp             TTSBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGG---SSSEEEEEESS-CHHHHH
T ss_pred             CCCCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhc---cCceEEEecCC-CHHHHH
Confidence            5899999999 999999999998  8999988887 99999999999999999999987   88999999997 455666


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCC----------ceeeEEEECCCCcEEecC
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIK----------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~v~~~~  268 (358)
                      ++...+. +.+|+..|....+++.||+.          ..|+++|||++|+|+++.
T Consensus        83 ~~~~~~~-~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~  137 (164)
T 4gqc_A           83 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW  137 (164)
T ss_dssp             HHHHHTT-CCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE
T ss_pred             HHHHhcC-cccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEE
Confidence            6666554 46788888889999999984          368899999999999873

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.82  E-value=4.6e-20  Score=151.78  Aligned_cols=138  Identities=12%  Similarity=0.144  Sum_probs=112.0

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCc-EEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k-~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      .+|..+|+|.+ +.+|+.+++++++|| +++|+|| ++||++|+.++|.|.+++++|++   .++.|++|++| +.+...
T Consensus        10 ~~G~~~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~~~vv~is~d-~~~~~~   85 (160)
T 1xvw_A           10 NVGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVG-PPPTHK   85 (160)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESC-CHHHHH
T ss_pred             CCCCCCCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCcEEEEEeCC-CHHHHH
Confidence            46889999999 899999999999998 9999998 99999999999999999999975   68999999998 456777


Q ss_pred             HhhhcCCccccccCchh--HHHHHHHcCCC----cee--eEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHH
Q 018266          223 LNHSIMPWLAIPYEDRA--RQDLCRIFNIK----GIP--ALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETA  294 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~--~~~l~~~~~v~----~~P--~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~  294 (358)
                      ++...+++ .+|+..+.  ...+.+.|++.    ++|  +++|||++|+|+++.       .|..   ..+..++++.+.
T Consensus        86 ~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~-------~g~~---~~~~~~~~l~~~  154 (160)
T 1xvw_A           86 IWATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE-------MKQP---GEVRDQRLWTDA  154 (160)
T ss_dssp             HHHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE-------ECCT---TCCCCHHHHHHH
T ss_pred             HHHHhcCC-CceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEE-------ecCC---CCCCCHHHHHHH
Confidence            77776654 56665563  67899999998    999  999999999999883       3321   122345666666


Q ss_pred             HHHh
Q 018266          295 LKKE  298 (358)
Q Consensus       295 l~~~  298 (358)
                      +++.
T Consensus       155 l~~l  158 (160)
T 1xvw_A          155 LAAL  158 (160)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            6543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.82  E-value=4.2e-20  Score=152.87  Aligned_cols=116  Identities=16%  Similarity=0.271  Sum_probs=104.8

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC--------
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--------  215 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--------  215 (358)
                      ..+|..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++++     ++.|++|++|        
T Consensus        11 ~~~g~~~p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~-----~v~vv~i~~d~~~~~~~~   85 (165)
T 3ha9_A           11 EEVLEREASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR-----EISVIAIDFWTAEALKAL   85 (165)
T ss_dssp             HHHHHHHHCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT-----TEEEEEEECCSHHHHHHH
T ss_pred             ccccCcCCCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC-----CcEEEEEEeccccccccc
Confidence            456889999999 99999999999999999999999999999999999999999884     6999999999        


Q ss_pred             ----------CCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          216 ----------RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       216 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                                .+.+.+.++...+++..+|...+ ...+.+.|++.++|+++|||++|+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~~~lid~~G~i~~  145 (165)
T 3ha9_A           86 GLNKPGYPPPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDYIVIMDKSSNVLY  145 (165)
T ss_dssp             TCCSTTSCCCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSEEEEEETTCCEEE
T ss_pred             ccccccCCCCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceEEEEEcCCCcEEE
Confidence                      78888999988776546666666 788999999999999999999999998

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.82  E-value=8.3e-20  Score=149.16  Aligned_cols=135  Identities=19%  Similarity=0.274  Sum_probs=113.0

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC--CCCHHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST--DRDHKEFDL  223 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~--d~~~~~~~~  223 (358)
                      +|.++|+|.+ +.+|+.+++++++ |+++|+||++||++|+.++|.|.++++++      ++.|++|++  +.+.+.+.+
T Consensus         7 ~g~~~p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~------~v~~v~v~~d~~~~~~~~~~   79 (154)
T 3ia1_A            7 PGEPLPDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET------GVPFYVISREPRDTREVVLE   79 (154)
T ss_dssp             SBEECCCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH------CCCEEEEECCTTCCHHHHHH
T ss_pred             CCCcCCceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc------CCeEEEEeCCCcccHHHHHH
Confidence            5788999999 8999999999999 99999999999999999999999999998      378999999  567788888


Q ss_pred             hhhcCCccccccCch---hHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          224 NHSIMPWLAIPYEDR---ARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~---~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      +...+++ .+|...+   ....+.+.|++.++|++++||++|+++.+.       .|...       .++|.+.+++...
T Consensus        80 ~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~~-------~~~l~~~l~~~~~  144 (154)
T 3ia1_A           80 YMKTYPR-FIPLLASDRDRPHEVAARFKVLGQPWTFVVDREGKVVALF-------AGRAG-------REALLDALLLAGA  144 (154)
T ss_dssp             HHTTCTT-EEECBCCSSCCHHHHHTTSSBCSSCEEEEECTTSEEEEEE-------ESBCC-------HHHHHHHHHHTTC
T ss_pred             HHHHcCC-CcccccccccchHHHHHHhCCCcccEEEEECCCCCEEEEE-------cCCCC-------HHHHHHHHHhccC
Confidence            8887764 5555444   678999999999999999999999999873       34322       5577777887766


Q ss_pred             CCC
Q 018266          301 ALP  303 (358)
Q Consensus       301 ~~~  303 (358)
                      ..+
T Consensus       145 ~~~  147 (154)
T 3ia1_A          145 DLE  147 (154)
T ss_dssp             CC-
T ss_pred             ccc
Confidence            555

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.82  E-value=8.2e-20  Score=153.82  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             hhhhccCCcee-cC--CCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCce------EEEEEeCCC
Q 018266          146 LLAIEGRDYVL-SR--DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF------EVVLVSTDR  216 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~------~vv~v~~d~  216 (358)
                      ..+.++|+|.+ +.  +|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++      .|++|++|.
T Consensus        32 ~~g~~~p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~~~~~v~~v~v~~d~  108 (183)
T 3lwa_A           32 ADRQQLPDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQA---AGNGDTPGGTVLGINVRD  108 (183)
T ss_dssp             GGCCCCCCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH---CC---CCSEEEEEEECSC
T ss_pred             ccCCCCCceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHh---cCCCccCCcEEEEEECCC
Confidence            34788999999 88  9999999999999999999999999999999999999999986   557      999999998


Q ss_pred             -CHHHHHHhhhcCCccccccCchhHHHHHHHc---CCCceeeEEEECCCCcEEec
Q 018266          217 -DHKEFDLNHSIMPWLAIPYEDRARQDLCRIF---NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~P~~~lid~~G~v~~~  267 (358)
                       +.+.+.++...++. .+|...+....+.+.|   ++.++|++++||++|+++.+
T Consensus       109 ~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~  162 (183)
T 3lwa_A          109 YSRDIAQDFVTDNGL-DYPSIYDPPFMTAASLGGVPASVIPTTIVLDKQHRPAAV  162 (183)
T ss_dssp             CCHHHHHHHHHHTTC-CSCEEECTTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred             CCHHHHHHHHHHcCC-CccEEECCcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence             78888888886653 3555555556666666   58999999999999999987

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.81  E-value=6e-20  Score=148.55  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=102.1

Q ss_pred             hhhccCCcee---cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CH
Q 018266          147 LAIEGRDYVL---SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH  218 (358)
Q Consensus       147 ~~~~~p~f~l---~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~  218 (358)
                      +|.++|+|.+   +.+|+.+++++++||+++|+||++||++|+.+.|.|.++++++++   . +.+++|++|.     +.
T Consensus         3 ~g~~~P~f~~~~~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~---~-~~~~~v~~~~~~~~~~~   78 (148)
T 2b5x_A            3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQD---Q-LNVVAVHMPRSEDDLDP   78 (148)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTT---T-SEEEEEECCCSTTTSSH
T ss_pred             CCCCCCCCccccccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcC---C-cEEEEEEcCCCccccCH
Confidence            4788999986   678999999999999999999999999999999999999999974   3 9999999886     66


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +.+.++...++. .+|+..+....+++.|++.++|+++++|++|+++.+
T Consensus        79 ~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  126 (148)
T 2b5x_A           79 GKIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF  126 (148)
T ss_dssp             HHHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred             HHHHHHHHHcCC-CcceEECCchhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence            788888887653 566666667789999999999999999999999987

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.81  E-value=1.2e-19  Score=144.67  Aligned_cols=111  Identities=21%  Similarity=0.272  Sum_probs=99.9

Q ss_pred             ccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018266          150 EGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  228 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  228 (358)
                      .+|+|.+ +.+|+.+++++++||+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|.+.+.+.++...+
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~   77 (136)
T 1lu4_A            3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP-----AVTFVGIATRADVGAMQSFVSKY   77 (136)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHHH
T ss_pred             CCCCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC-----CcEEEEEEcCCCHHHHHHHHHHc
Confidence            5788998 89999999999999999999999999999999999999999874     68999999999898899888866


Q ss_pred             CccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          229 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       229 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++ .+|...+....+.+.|++.++|+++++|++|+++ +
T Consensus        78 ~~-~~~~~~d~~~~~~~~~~i~~~P~~~lid~~G~i~-~  114 (136)
T 1lu4_A           78 NL-NFTNLNDADGVIWARYNVPWQPAFVFYRADGTST-F  114 (136)
T ss_dssp             TC-CSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEE-E
T ss_pred             CC-CceEEECCchhHHHhcCCCCCCEEEEECCCCcEE-E
Confidence            54 5666667678899999999999999999999998 5

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.81  E-value=1.6e-19  Score=152.64  Aligned_cols=118  Identities=24%  Similarity=0.268  Sum_probs=102.1

Q ss_pred             hhhccCCcee-cCCCc----eeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          147 LAIEGRDYVL-SRDHR----KITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~----~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      +|..+|+|.+ +.+|+    .+++++++||+++|+|| ++||++|+.++|.|.+++++|++   .++.|++|++|. .+.
T Consensus         3 ~G~~~P~f~l~~~~g~~~~~~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~vs~d~-~~~   78 (187)
T 1we0_A            3 IGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDT-HFV   78 (187)
T ss_dssp             TTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred             CCCcCCCeEEeccCCCccceEecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-HHH
Confidence            5788999999 88888    99999999999999999 99999999999999999999986   689999999986 455


Q ss_pred             HHHhhhcCC---ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ..++...+.   ...+|+..|....+++.|++.      ++|+++|||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~  135 (187)
T 1we0_A           79 HKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIE  135 (187)
T ss_dssp             HHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhccccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEE
Confidence            566666552   245666666678899999998      999999999999999884

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.81  E-value=1.7e-19  Score=156.37  Aligned_cols=119  Identities=12%  Similarity=0.182  Sum_probs=102.4

Q ss_pred             hhhhccCCcee-cC--CC--ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018266          146 LLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g--~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      .+|.++|+|.+ +.  +|  +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++   .+++||+|++|. .
T Consensus        26 ~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~---~~v~vv~Is~D~-~  101 (221)
T 2c0d_A           26 LVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFEN---KNVELLGISVDS-V  101 (221)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred             CCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-H
Confidence            46889999999 77  89  89999999 9999999999 99999999999999999999986   789999999975 4


Q ss_pred             HHHHHhhhcCC------ccccccCchhHHHHHHHcCC-----CceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMP------WLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~~  268 (358)
                      +...++.+.+.      .+.+|+..|....+++.|++     ..+|+++|||++|+|+++.
T Consensus       102 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~  162 (221)
T 2c0d_A          102 YSHLAWKNMPIEKGGIGNVEFTLVSDINKDISKNYNVLYDNSFALRGLFIIDKNGCVRHQT  162 (221)
T ss_dssp             HHHHHHHHSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhhhhcCccCCceEEEECCchHHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence            44555555441      35677777777899999999     4789999999999999883

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=99.81  E-value=7.3e-20  Score=170.80  Aligned_cols=198  Identities=14%  Similarity=0.199  Sum_probs=117.5

Q ss_pred             ceecccccCcccccCCCCc--eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHH
Q 018266           16 FLTVLASEGVEFLLSRQGK--VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE   93 (358)
Q Consensus        16 ~~~~l~~~~~~~l~~~~g~--v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~   93 (358)
                      +...+..+..+.+...+.+  ..+-....++++|.||++||++|+.+.|.|.+++++++++   +.++.++++....   
T Consensus       107 i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~~~~~---i~f~~vd~~~~~~---  180 (361)
T 3uem_A          107 LLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAESFKGK---ILFIFIDSDHTDN---  180 (361)
T ss_dssp             HHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGGGTTT---CEEEEECTTSGGG---
T ss_pred             HHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHHccCc---eEEEEecCChHHH---
Confidence            5555555555555444443  3333334568899999999999999999999999999875   6677776663222   


Q ss_pred             HHHhhCCCcccccccceeeeccccCC--CCcchHhHH-HHHhhhh---hhhccchhhHh----hhhc---------cCC-
Q 018266           94 EHFKSSDGTLIEEDLIGLIEDYGADA--YPFTRKRRE-ELKAIDD---SKRQGGKLEQL----LAIE---------GRD-  153 (358)
Q Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~gi~~--~P~~~~~~~-~~~~~~~---~~~~~~~l~~~----~~~~---------~p~-  153 (358)
                                     ..+++.||+..  +|+...... .....+.   .......+..+    +..+         .|. 
T Consensus       181 ---------------~~~~~~fgi~~~~~P~~~~~~~~~~~~ky~~~~~~~~~~~l~~fi~~~l~g~~~~~~~s~~~p~~  245 (361)
T 3uem_A          181 ---------------QRILEFFGLKKEECPAVRLITLEEEMTKYKPESEELTAERITEFCHRFLEGKIKPHLMSQELPED  245 (361)
T ss_dssp             ---------------HHHHHHTTCCTTTCSEEEEEECC--CCEECCSSCCCCHHHHHHHHHHHHTTCSCCCCBCCCCCTT
T ss_pred             ---------------HHHHHHcCCCccCCccEEEEEcCCcccccCCCccccCHHHHHHHHHHHhcCCCcccccCCCCCcc
Confidence                           13444555544  453211100 0000000   00111111111    1111         110 


Q ss_pred             ----ceecCCCceeeecc-cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcC
Q 018266          154 ----YVLSRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIM  228 (358)
Q Consensus       154 ----f~l~~~g~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~  228 (358)
                          -...++++.+.... ..+|+++|+||++||++|+.+.|.|.+++++++.  ..++.++.|..+..           
T Consensus       246 ~~~~~v~~l~~~~f~~~~~~~~k~~lv~f~a~wC~~C~~~~p~~~~la~~~~~--~~~v~~~~vd~~~~-----------  312 (361)
T 3uem_A          246 WDKQPVKVLVGKNFEDVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKD--HENIVIAKMDSTAN-----------  312 (361)
T ss_dssp             TTTSSSEEECTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHTTT--CSSEEEEEEETTTC-----------
T ss_pred             cccCCcEEeecCchhhhcccCCCcEEEEEecCcCHhHHHHHHHHHHHHHHhcc--CCcEEEEEEECCcc-----------
Confidence                01123343333222 2579999999999999999999999999999974  23566666655543           


Q ss_pred             CccccccCchhHHHHHHHcCCCceeeEEEECCC
Q 018266          229 PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD  261 (358)
Q Consensus       229 ~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~  261 (358)
                                  .  ++.|+|.++||+++++++
T Consensus       313 ------------~--~~~~~v~~~Pt~~~~~~~  331 (361)
T 3uem_A          313 ------------E--VEAVKVHSFPTLKFFPAS  331 (361)
T ss_dssp             ------------B--CSSCCCCSSSEEEEECSS
T ss_pred             ------------c--hhhcCCcccCeEEEEECC
Confidence                        1  467999999999999654

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.81  E-value=5.8e-20  Score=151.66  Aligned_cols=129  Identities=22%  Similarity=0.285  Sum_probs=106.4

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CHHHHHHhhhcCCcc
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKEFDLNHSIMPWL  231 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~  231 (358)
                      +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|+.   .++.|++|++|.     +.+.+.+++..+.+.
T Consensus        25 ~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~  101 (164)
T 2h30_A           25 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKF---SSANLITVASPGFLHEKKDGEFQKWYAGLNYP  101 (164)
T ss_dssp             ETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGG---TTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             CCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc---CCcEEEEEEcCCCccccCHHHHHHHHHhCCCC
Confidence            889999999999999999999999999999999999999999976   789999999863     456788888776665


Q ss_pred             ccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCC
Q 018266          232 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDAL  302 (358)
Q Consensus       232 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~  302 (358)
                      .++...+....+++.|++.++|++++||++|+++.+.       .|...       .++|.+.+++.+..+
T Consensus       102 ~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~-------~g~~~-------~~~l~~~i~~~~~~~  158 (164)
T 2h30_A          102 KLPVVTDNGGTIAQNLNISVYPSWALIGKDGDVQRIV-------KGSIN-------EAQALALIRNPNADL  158 (164)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEEE-------ESCCC-------HHHHHHHHHCTTCCC
T ss_pred             cceEEEcCchHHHHHcCCCccceEEEECCCCcEEEEE-------cCCCC-------HHHHHHHHHHHHHHH
Confidence            5677667678899999999999999999999999872       34322       456666666655443

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.81  E-value=5.8e-20  Score=154.36  Aligned_cols=138  Identities=18%  Similarity=0.169  Sum_probs=109.5

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      .+|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|.+++++|++   .+++|++|+.|. .+...+
T Consensus        26 ~ig~~aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~---~~~~vv~Vs~D~-~~~~~~  101 (179)
T 3ixr_A           26 TLNHSLLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQ---INATVLGVSRDS-VKSHDS  101 (179)
T ss_dssp             BCCHHHHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHT---TTEEEEEEESCC-HHHHHH
T ss_pred             ccCCcCCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEcCCC-HHHHHH
Confidence            34555999999 9999999999999999999998 99999999999999999999986   789999999984 555666


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCCCc------------eeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHH
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNIKG------------IPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEI  291 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v~~------------~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L  291 (358)
                      +...+. +.+|+..|....+++.|++..            .|+++|||++|+|++..       .+.    ......+++
T Consensus       102 ~~~~~~-~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~-------~~~----~~~~~~~~i  169 (179)
T 3ixr_A          102 FCAKQG-FTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAW-------RQV----KVPGHAEEV  169 (179)
T ss_dssp             HHHHHT-CCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEE-------CSC----CSTTHHHHH
T ss_pred             HHHHcC-CceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEE-------cCC----CCCCCHHHH
Confidence            666543 456776777789999999864            58899999999999872       121    123445666


Q ss_pred             HHHHHHhc
Q 018266          292 ETALKKEG  299 (358)
Q Consensus       292 ~~~l~~~~  299 (358)
                      .+.++++.
T Consensus       170 l~~l~~l~  177 (179)
T 3ixr_A          170 LNKLKAHA  177 (179)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666543

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.81  E-value=4.5e-20  Score=156.12  Aligned_cols=117  Identities=20%  Similarity=0.247  Sum_probs=93.2

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHH
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK  219 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~  219 (358)
                      +.++|+|.+ +.+|+.+++++++||+|||+||++||++|+.++|.|.+++++|++   .+++||+|++|       .+.+
T Consensus        23 ~~~~p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~e~~~~~   99 (187)
T 3dwv_A           23 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPSNQFGGQEPGNEE   99 (187)
T ss_dssp             CCSGGGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGG---GTCEEEEEEBCCCSSCSSSBTT
T ss_pred             CCccCCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhh---CCeEEEEEECcccCCCCCCCHH
Confidence            467899999 999999999999999999999999999999999999999999986   68999999998       3467


Q ss_pred             HHHHhhhcCCccccccCc--h----hHHHHH--------HHcCCCcee---eEEEECCCCcEEec
Q 018266          220 EFDLNHSIMPWLAIPYED--R----ARQDLC--------RIFNIKGIP---ALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~--~----~~~~l~--------~~~~v~~~P---~~~lid~~G~v~~~  267 (358)
                      .+.++....-.+.+|...  +    ....+.        ..|++..+|   +++|||++|+|+.+
T Consensus       100 ~~~~~~~~~~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~iP~~~~~~liD~~G~i~~~  164 (187)
T 3dwv_A          100 EIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILATKAIKWNFTSFLIDRDGVPVER  164 (187)
T ss_dssp             HHHHSCCBCCCCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSBSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHhccCCCCceeeccccCCcchhHHHHHHHhhcCCccCCCccccceeEEEECCCCCEEEE
Confidence            788877743123344331  1    111111        345677888   99999999999988

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.81  E-value=7e-19  Score=146.19  Aligned_cols=116  Identities=19%  Similarity=0.327  Sum_probs=96.9

Q ss_pred             CCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcc-cCCceEEEEEeCCC---CHHHHHHhh
Q 018266          152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDR---DHKEFDLNH  225 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~---~~~~~~~~~  225 (358)
                      |+|.+ +.+|+.+++++++||++||+||++||++ |+.++|.|.+++++|++. ...+++|++|++|.   +.+.+.++.
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~   86 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV   86 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence            88998 8999999999999999999999999998 999999999999999631 12589999999984   467777777


Q ss_pred             hcCC--ccccccCchhHHHHHHHcCCCcee---------------eEEEECCCCcEEec
Q 018266          226 SIMP--WLAIPYEDRARQDLCRIFNIKGIP---------------ALVLIGPDGKTIST  267 (358)
Q Consensus       226 ~~~~--~~~~~~~~~~~~~l~~~~~v~~~P---------------~~~lid~~G~v~~~  267 (358)
                      ..++  |..+....+....+++.|++..+|               +++|||++|+|+.+
T Consensus        87 ~~~~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~  145 (171)
T 2rli_A           87 QDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY  145 (171)
T ss_dssp             HTTCTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred             HHcCCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence            7554  333333334556899999999999               89999999999987

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.69  E-value=1.9e-21  Score=156.82  Aligned_cols=121  Identities=39%  Similarity=0.746  Sum_probs=105.9

Q ss_pred             ccCCcee-cCCCceeeecc-cCCc-EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          150 EGRDYVL-SRDHRKITVSE-LAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       150 ~~p~f~l-~~~g~~~~l~~-~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      ..|+|.+ +.+|+.+++++ ++|| +++|+||++||++|+.++|.|.+++++++. .+.++.|++|++|.+.+.+.+++.
T Consensus         3 ~~p~~~l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~-~~~~~~v~~v~~d~~~~~~~~~~~   81 (143)
T 2lus_A            3 FIQGIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVD-DSAPFEIIFVSSDRSEDDMFQYMM   81 (143)
Confidence            4688888 88999999999 9999 999999999999999999999999999953 225799999999988888888887


Q ss_pred             cC--CccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcch
Q 018266          227 IM--PWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKE  271 (358)
Q Consensus       227 ~~--~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~  271 (358)
                      .+  +|..+++..+....+++.|++.++|++++||++|++++++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~  128 (143)
T 2lus_A           82 ESHGDWLAIPYRSGPASNVTAKYGITGIPALVIVKKDGTLISMNGRG  128 (143)
Confidence            55  5777788777778899999999999999999999999987533

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.80  E-value=1.5e-19  Score=148.51  Aligned_cols=115  Identities=15%  Similarity=0.310  Sum_probs=100.3

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      .+|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.++++++++   .++.+++|+.|..   +.++
T Consensus        16 ~~G~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~v~~d~~---~~~~   89 (158)
T 3hdc_A           16 RTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPK---GDLVVLAVNVEKR---FPEK   89 (158)
T ss_dssp             CTTSBCCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSST---TSEEEEEEECSSS---CCGG
T ss_pred             CCCCcCCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHccc---CCeEEEEEeCCHH---HHHH
Confidence            35889999999 999999999999999999999999999999999999999999975   7899999999874   3444


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ...++ ..+++..+....+.+.|++.++|+++|||++|+++.+
T Consensus        90 ~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  131 (158)
T 3hdc_A           90 YRRAP-VSFNFLSDATGQVQQRYGANRLPDTFIVDRKGIIRQR  131 (158)
T ss_dssp             GGGCC-CSCEEEECTTSHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHcC-CCceEEECchHHHHHHhCCCCcceEEEEcCCCCEEEE
Confidence            44443 3456666667889999999999999999999999988

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.80  E-value=2.2e-19  Score=151.88  Aligned_cols=116  Identities=12%  Similarity=0.178  Sum_probs=102.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      +|..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   . +.|++|++|.       +.
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~-~~~v~v~~d~~~~~~~d~~   84 (188)
T 2cvb_A            9 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRG---K-VAFVGINANDYEKYPEDAP   84 (188)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTT---T-EEEEEEECCCTTTCGGGSH
T ss_pred             CCCCCCCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhc---C-eEEEEEEcCccccccccCH
Confidence            5788999999 899999999999999999999999999999999999999999985   5 9999999963       55


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +.+.++...++ +.+|+..+....+++.|++.++|+++|||++|+++++
T Consensus        85 ~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  132 (188)
T 2cvb_A           85 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYH  132 (188)
T ss_dssp             HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEE
T ss_pred             HHHHHHHHHhC-CCceEEECCcchHHHHcCCCCCCeEEEECCCCcEEEE
Confidence            67777777655 3566666667789999999999999999999999988

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.80  E-value=2.1e-19  Score=152.63  Aligned_cols=118  Identities=16%  Similarity=0.185  Sum_probs=102.7

Q ss_pred             hhhccCCcee-cC--CC--ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          147 LAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       147 ~~~~~p~f~l-~~--~g--~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      +|.++|+|.+ +.  +|  +.++++++ +||+++|+|| ++||++|+.++|.|.+++++|++   .+++|++|++|. .+
T Consensus         2 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~---~~v~vv~Is~d~-~~   77 (192)
T 2h01_A            2 FQGQAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDS-KF   77 (192)
T ss_dssp             CSSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSC-HH
T ss_pred             CCCcCCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEEeCC-HH
Confidence            4788999999 77  89  89999999 9999999999 99999999999999999999986   789999999984 55


Q ss_pred             HHHHhhhcCC------ccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecC
Q 018266          220 EFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 ~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~  268 (358)
                      ...++...+.      .+.+|+..|....+++.|++.     .+|+++|||++|+|+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~  137 (192)
T 2h01_A           78 THLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHLL  137 (192)
T ss_dssp             HHHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhHHhhCCccCCCcCeEECCcHHHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence            5666665541      456777777778899999999     899999999999999884

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.80  E-value=2.6e-19  Score=154.58  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=103.7

Q ss_pred             hhhhccCCcee-cC--CC--ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018266          146 LLAIEGRDYVL-SR--DH--RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g--~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      .+|.++|+|.+ +.  +|  +.++++++ +||++||+|| ++||++|+.++|.|.+++++|++   .+++||+|++|. .
T Consensus        22 ~~G~~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D~-~   97 (213)
T 2i81_A           22 YVGKEAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHE---RNVELLGCSVDS-K   97 (213)
T ss_dssp             CBTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred             cCCCcCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-H
Confidence            36889999999 66  89  89999999 9999999999 99999999999999999999986   789999999984 4


Q ss_pred             HHHHHhhhcCC------ccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMP------WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~  268 (358)
                      +...++...+.      .+.+|+..|....+++.|++.     .+|+++|||++|+|+++.
T Consensus        98 ~~~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~  158 (213)
T 2i81_A           98 YTHLAWKKTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL  158 (213)
T ss_dssp             HHHHHHHSSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhhCCccCCCceEEECCchHHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence            55666665441      356777777788999999999     899999999999999883

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.80  E-value=7.1e-20  Score=187.52  Aligned_cols=185  Identities=15%  Similarity=0.210  Sum_probs=123.1

Q ss_pred             ccccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccc
Q 018266           26 EFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIE  105 (358)
Q Consensus        26 ~~l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (358)
                      ..++..+++ ++.++.|++|+|.|||+||+||+.++|.|.++++++++.   +.++.|+++...                
T Consensus       440 ~~v~~l~~~-~~~~~~~~~vlv~F~a~wC~~c~~~~p~~~~~a~~~~~~---v~~~~vd~~~~~----------------  499 (780)
T 3apo_A          440 SHVTTLGPQ-NFPASDKEPWLVDFFAPWSPPSRALLPELRKASTLLYGQ---LKVGTLDCTIHE----------------  499 (780)
T ss_dssp             SCEEECCTT-TSCTTCCSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH----------------
T ss_pred             CCCEecCHH-HHHHcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEeCCCCH----------------
Confidence            334444444 122337899999999999999999999999999999753   778888877554                


Q ss_pred             cccceeeeccccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhc-cCCceecCCCceeee---cccCCcEEEEEEeccC
Q 018266          106 EDLIGLIEDYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIE-GRDYVLSRDHRKITV---SELAGKTIGLYFGAHW  181 (358)
Q Consensus       106 ~~~~~l~~~~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~p~f~l~~~g~~~~l---~~~~~k~vlv~F~a~w  181 (358)
                          .+++.|||.++|+...........+.+......+..++... .|... .++++.+.-   ..-.++.++|.|+++|
T Consensus       500 ----~~~~~~~v~~~Pt~~~~~~g~~~~~~g~~~~~~l~~fi~~~~~~~v~-~l~~~~f~~~v~~~~~~~~~lv~F~ap~  574 (780)
T 3apo_A          500 ----GLCNMYNIQAYPTTVVFNQSSIHEYEGHHSAEQILEFIEDLRNPSVV-SLTPSTFNELVKQRKHDEVWMVDFYSPW  574 (780)
T ss_dssp             ----HHHHHTTCCSSSEEEEEETTEEEEECSCSCHHHHHHHHHHHHSCSEE-ECCHHHHHHHTTTCCTTCCEEEEEECTT
T ss_pred             ----HHHHHcCCCcCCeEEEEcCCceeeecCcccHHHHHHHHHhhccccee-ecCcccHHHHhhccCCCCeEEEEEECCC
Confidence                46777888888864322111001111222223333333222 12222 233332211   1112467899999999


Q ss_pred             CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCC
Q 018266          182 CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD  261 (358)
Q Consensus       182 C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~  261 (358)
                      |++|+.+.|.+.+++++++    .++.++.+..+.                       +..+++.|+|.++|+++++.++
T Consensus       575 C~~c~~~~p~~~~lA~~~~----~~v~~~~vd~~~-----------------------~~~l~~~~~v~~~Pti~~~~~~  627 (780)
T 3apo_A          575 SHPSQVLMPEWKRMARTLT----GLINVGSVDCGQ-----------------------YHSFCTQENVQRYPEIRFYPQK  627 (780)
T ss_dssp             CHHHHHHHHHHHHHHHHHT----TTSEEEEEETTT-----------------------THHHHHHTTCCSSSEEEEECCC
T ss_pred             CHHHHHhhHHHHHHHHHhh----CCeEEEEEECcc-----------------------hHHHHHHcCCCCCCeEEEEcCC
Confidence            9999999999999999997    457777776664                       3578899999999999999654


Q ss_pred             C
Q 018266          262 G  262 (358)
Q Consensus       262 G  262 (358)
                      +
T Consensus       628 ~  628 (780)
T 3apo_A          628 S  628 (780)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.80  E-value=3.8e-19  Score=150.31  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=100.8

Q ss_pred             hhhccCCcee-cC-CC--ceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          147 LAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       147 ~~~~~p~f~l-~~-~g--~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      +|.++|+|.+ +. +|  +.+++++++||+++|+||+ +||++|+.++|.|.+++++|++   .+++|++|++|. .+..
T Consensus         3 ~G~~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~---~~v~vv~Is~d~-~~~~   78 (186)
T 1n8j_A            3 INTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDT-HFTH   78 (186)
T ss_dssp             TTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHHH
T ss_pred             CCCcCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHHH
Confidence            5789999999 77 58  8999999999999999995 9999999999999999999986   789999999985 4555


Q ss_pred             HHhhhcCC---ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          222 DLNHSIMP---WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       222 ~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      .++.+.++   .+.+|+..|....+++.|++.      .+|+++|||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~  134 (186)
T 1n8j_A           79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIE  134 (186)
T ss_dssp             HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHcCcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEE
Confidence            66666552   345677777778899999997      379999999999999884

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.80  E-value=4.4e-19  Score=151.06  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=111.1

Q ss_pred             hhhccCCcee-cCC-------------C--ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEE
Q 018266          147 LAIEGRDYVL-SRD-------------H--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV  209 (358)
Q Consensus       147 ~~~~~p~f~l-~~~-------------g--~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~v  209 (358)
                      +|..+|+|.+ +.+             |  +.+++++++||+++|+|| ++||++|+.++|.|.+++++|+.   .+++|
T Consensus         6 ~G~~~P~f~l~~~~~~~~~~~~~~~~~G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~v   82 (195)
T 2bmx_A            6 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI   82 (195)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred             CCCcCCCcCcccccccccccccccccCCCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHH---CCCEE
Confidence            5788999998 666             6  899999999999999999 99999999999999999999985   68999


Q ss_pred             EEEeCCCCHHHHHHhhhcCC---ccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecCcchhhhhcCCCCC
Q 018266          210 VLVSTDRDHKEFDLNHSIMP---WLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTNGKEMISLYGAKAF  281 (358)
Q Consensus       210 v~v~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~  281 (358)
                      ++|++|. .+...++...+.   .+.+|+..+....+.+.|++.     .+|+++|||++|+|+++.       .|....
T Consensus        83 v~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~-------~g~~~~  154 (195)
T 2bmx_A           83 LGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS-------ATAGSV  154 (195)
T ss_dssp             EEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE-------EECTTC
T ss_pred             EEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHHHHhCCcccCCCccceEEEEcCCCeEEEEE-------ecCCCC
Confidence            9999986 556666666551   245666666678899999999     999999999999999883       333221


Q ss_pred             CCchhhHHHHHHHHHHhcC
Q 018266          282 PFTESRIAEIETALKKEGD  300 (358)
Q Consensus       282 p~~~~~~~~L~~~l~~~~~  300 (358)
                      ..   ..++|.+.++++..
T Consensus       155 ~~---~~~~l~~~l~~l~~  170 (195)
T 2bmx_A          155 GR---NVDEVLRVLDALQS  170 (195)
T ss_dssp             CC---CHHHHHHHHHHHHC
T ss_pred             CC---CHHHHHHHHHHHhh
Confidence            11   24556666665543

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.80  E-value=4e-19  Score=151.65  Aligned_cols=118  Identities=13%  Similarity=0.165  Sum_probs=102.0

Q ss_pred             hhhccCCcee-cC--CCc---eeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018266          147 LAIEGRDYVL-SR--DHR---KITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~--~g~---~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      +|.++|+|.+ +.  +|+   .++++++ +||+++|+|| ++||++|+.++|.|.+++++|++   .++.|++|++|. .
T Consensus         3 ~G~~~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~Is~d~-~   78 (198)
T 1zof_A            3 VTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDS-E   78 (198)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSC-H
T ss_pred             CCCcCCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEECCC-H
Confidence            5788999999 77  898   9999999 9999999999 99999999999999999999986   789999999995 4


Q ss_pred             HHHHHhhhcC------CccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~~  268 (358)
                      +...++...+      ..+.+|+..|....+.+.|++.     .+|+++|||++|+|+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~  139 (198)
T 1zof_A           79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHAV  139 (198)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred             HHHHHHHHhhhhcccccCceeEEEECCchHHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence            5556665541      2345677677778899999999     999999999999999883

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.80  E-value=5e-19  Score=147.53  Aligned_cols=120  Identities=19%  Similarity=0.293  Sum_probs=97.0

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEF  221 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~  221 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++||+ +|..+++.|.+++++|++ .+.++.||+|++|.   +.+.+
T Consensus         9 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~-~~~~~~vv~is~d~~~d~~~~~   87 (174)
T 1xzo_A            9 LNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKPKQL   87 (174)
T ss_dssp             CCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCHHHH
T ss_pred             cccccCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhh-cCCcEEEEEEEeCCCCCCHHHH
Confidence            5788999999 999999999999999999999999999 999999999999999986 22259999999983   56778


Q ss_pred             HHhhhcCCcc--ccccCchhHHHHHHH----------------cCCCceeeEEEECCCCcEEec
Q 018266          222 DLNHSIMPWL--AIPYEDRARQDLCRI----------------FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~~~~--~~~~~~~~~~~l~~~----------------~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .++...++..  .+++..+....+.+.                |++..+|+++|||++|+|+.+
T Consensus        88 ~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~  151 (174)
T 1xzo_A           88 KKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  151 (174)
T ss_dssp             HHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             HHHHHHcCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence            8888766531  224444433333333                356789999999999999987

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.79  E-value=3.4e-19  Score=154.88  Aligned_cols=120  Identities=16%  Similarity=0.269  Sum_probs=100.3

Q ss_pred             HhhhhccCCcee-cC-CC--ceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          145 QLLAIEGRDYVL-SR-DH--RKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~-~g--~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      ..+|.++|+|.+ +. ++  +++++++++||++||+||+ +||++|+.++|.|.+++++|++   .+++||+|++|.. +
T Consensus        40 l~~G~~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~---~~v~vv~Is~D~~-~  115 (222)
T 3ztl_A           40 LLPNRPAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNS---RNCQVIACSTDSQ-Y  115 (222)
T ss_dssp             CCSSEECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCH-H
T ss_pred             ccCCCCCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCCH-H
Confidence            346889999998 44 44  8999999999999999996 9999999999999999999986   7899999999863 3


Q ss_pred             HHHHhhhcC------CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          220 EFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ...++...+      ..+.+|+..|....+.+.|++.      .+|+++|||++|+|+++.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~  176 (222)
T 3ztl_A          116 SHLAWDNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT  176 (222)
T ss_dssp             HHHHHHHSCGGGTSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred             HHHHHHHHhhhhccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence            333443322      2466777777778999999998      899999999999999884

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.79  E-value=5.1e-19  Score=151.49  Aligned_cols=119  Identities=17%  Similarity=0.191  Sum_probs=102.1

Q ss_pred             hhhhccCCcee-cC--CC--ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          146 LLAIEGRDYVL-SR--DH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g--~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      .+|.++|+|.+ +.  +|  +.+++++++||+++|+|| ++||++|+.++|.|.+++++|++   .+++|++|++|. .+
T Consensus         7 ~~G~~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~---~~v~vi~Is~D~-~~   82 (202)
T 1uul_A            7 EDLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDS-EY   82 (202)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HH
T ss_pred             cCCCcCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCEEEEEeCCC-HH
Confidence            35889999998 55  68  899999999999999999 99999999999999999999986   789999999985 44


Q ss_pred             HHHHhhhcC----C--ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          220 EFDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 ~~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ...++.+.+    .  ...+|+..|....+++.|++.      .+|+++|||++|+|+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~  143 (202)
T 1uul_A           83 SHLAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT  143 (202)
T ss_dssp             HHHHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhhCCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence            555565544    1  356677777778999999999      999999999999999883

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.79  E-value=2.3e-19  Score=148.78  Aligned_cols=116  Identities=11%  Similarity=0.103  Sum_probs=100.6

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++| |++|+.++|.|.+++++|     .+++|++|++|. .+...++
T Consensus        20 ~G~~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~-----~~~~vv~is~d~-~~~~~~~   93 (167)
T 2jsy_A           20 VGDQAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL-----GDVNVYTISADL-PFAQARW   93 (167)
T ss_dssp             TTSCCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH-----SSCEEEEEECSS-GGGTSCC
T ss_pred             CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc-----CCCEEEEEECCC-HHHHHHH
Confidence            5888999999 9999999999999999999999999 999999999999999998     458999999984 4456666


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCCc------eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIKG------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~------~P~~~lid~~G~v~~~~  268 (358)
                      .+.+++..+|...+ ....+.+.|++..      .|+++|||++|+|+++.
T Consensus        94 ~~~~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~  144 (167)
T 2jsy_A           94 CGANGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAE  144 (167)
T ss_dssp             GGGSSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEE
T ss_pred             HHhcCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEE
Confidence            66666546777777 6778999999986      49999999999999884

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=152.37  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=91.8

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  217 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  217 (358)
                      .+|.++|+|.+ +.+|+++++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.       +
T Consensus        24 ~~g~~~p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~~  100 (181)
T 2p31_A           24 QQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP---HHFNVLAFPCNQFGQQEPDS  100 (181)
T ss_dssp             ---CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSC
T ss_pred             CcCCccCceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhc---CCEEEEEEECcCCCCCCCCC
Confidence            35788999999 999999999999999999999999999999999999999999986   679999999974       5


Q ss_pred             HHHHHHhhhc-CCccccccCc--hhHHHH---HHHcCCCcee-------eEEEECCCCcEEec
Q 018266          218 HKEFDLNHSI-MPWLAIPYED--RARQDL---CRIFNIKGIP-------ALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~-~~~~~~~~~~--~~~~~l---~~~~~v~~~P-------~~~lid~~G~v~~~  267 (358)
                      .+.+.++... ++ ..+|...  +.....   .-.|++.++|       +++|||++|+|+.+
T Consensus       101 ~~~~~~~~~~~~~-~~~p~~~~~d~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~  162 (181)
T 2p31_A          101 NKEIESFARRTYS-VSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA  162 (181)
T ss_dssp             HHHHHHHHHHHHC-CCSCBBCCCCCSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHhhcC-CCceeEeecccCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence            6677777665 33 2344331  111111   1135567788       99999999999987

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.79  E-value=4.9e-19  Score=152.59  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=100.7

Q ss_pred             hhhhccCCcee-cC---CCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          146 LLAIEGRDYVL-SR---DHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~---~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      .+|.++|+|.+ +.   +|+.+++++++||++||+|| ++||++|..++|.|.+++++|++   .+++||+|++|. .+.
T Consensus        20 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~---~~v~vv~Is~D~-~~~   95 (211)
T 2pn8_A           20 FQSMPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDS-QFT   95 (211)
T ss_dssp             CSSCBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSC-HHH
T ss_pred             CCCCcCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHH
Confidence            35889999998 43   45899999999999999999 99999999999999999999986   789999999984 445


Q ss_pred             HHHhhhcC------CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ..++.+.+      ..+.+|+..|....+++.|++.      .+|+++|||++|+|++..
T Consensus        96 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~  155 (211)
T 2pn8_A           96 HLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  155 (211)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhhhccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEE
Confidence            55565544      1456777777778999999994      699999999999999884

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.79  E-value=1.9e-19  Score=149.31  Aligned_cols=114  Identities=20%  Similarity=0.186  Sum_probs=96.8

Q ss_pred             hhhhccCCcee-cC--CCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          146 LLAIEGRDYVL-SR--DHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      .+|.++|+|.+ +.  +|+.++++.+ +||+++|+||++||++|+.+.|.|.+++++       ++.|++|++|.+.+.+
T Consensus        23 ~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~-------~v~vv~v~~~~~~~~~   95 (168)
T 2b1k_A           23 LIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-------GIRVVGMNYKDDRQKA   95 (168)
T ss_dssp             TTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT-------TCCEEEEEESCCHHHH
T ss_pred             ccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC-------CCEEEEEECCCChHHH
Confidence            46899999999 77  8999998885 899999999999999999999999887653       5789999999888888


Q ss_pred             HHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          222 DLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .++...++. .++ ...+....+++.|++.++|++++||++|+++.+
T Consensus        96 ~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~  141 (168)
T 2b1k_A           96 ISWLKELGN-PYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR  141 (168)
T ss_dssp             HHHHHHHCC-CCSEEEEETTCHHHHHHTCCSSSEEEEECTTSBEEEE
T ss_pred             HHHHHHcCC-CCceeeECcchHHHHHcCccccCEEEEECCCCeEEEE
Confidence            888876543 222 234556789999999999999999999999977

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.79  E-value=1.3e-19  Score=149.10  Aligned_cols=116  Identities=17%  Similarity=0.196  Sum_probs=99.6

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCc--EEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k--~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      .+|..+|+|.+ +.+|+++++++++||  +++|+|| ++||++|..++|.|.+++++|++   .+ .|++|++| +.+..
T Consensus         8 ~~G~~~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~---~~-~vv~is~d-~~~~~   82 (159)
T 2a4v_A            8 EIGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKE---YA-AVFGLSAD-SVTSQ   82 (159)
T ss_dssp             CTTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTT---TC-EEEEEESC-CHHHH
T ss_pred             CCCCCCCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHh---CC-cEEEEeCC-CHHHH
Confidence            35889999999 899999999999987  8999987 99999999999999999999986   56 99999999 45666


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCcee------eEEEECCCCcEEecC
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP------ALVLIGPDGKTISTN  268 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P------~~~lid~~G~v~~~~  268 (358)
                      .++...++ +.+|+..|....+.+.|++...|      +.+|| ++|+|+++.
T Consensus        83 ~~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~p~~g~~~~~~li-~~G~i~~~~  133 (159)
T 2a4v_A           83 KKFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKR  133 (159)
T ss_dssp             HHHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHhC-CCceEEECCccHHHHHhCCcccccCCccceEEEE-cCCEEEEEE
Confidence            67766554 35677667778899999999888      88999 999999883

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.79  E-value=1.3e-18  Score=151.03  Aligned_cols=119  Identities=17%  Similarity=0.240  Sum_probs=101.7

Q ss_pred             hhhhccCCcee-c---CCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          146 LLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~---~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      .+|.++|+|.+ +   .+|+.+++++++||++||+|| ++||++|+.+++.|.+++++|++   .+++||+|++|. .+.
T Consensus        28 ~~G~~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~---~~v~vv~Is~D~-~~~  103 (220)
T 1zye_A           28 AVTQHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDS-HFS  103 (220)
T ss_dssp             CTTSBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSC-HHH
T ss_pred             cCCCCCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---CCCEEEEEECCC-HHH
Confidence            46889999998 2   467899999999999999999 99999999999999999999986   789999999995 444


Q ss_pred             HHHhhhcC----C--ccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIM----P--WLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~----~--~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ..++...+    .  ...+|+..|....+++.|++.      .+|+++|||++|+|+++.
T Consensus       104 ~~~~~~~~~~~~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~  163 (220)
T 1zye_A          104 HLAWINTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS  163 (220)
T ss_dssp             HHHHHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhCCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEE
Confidence            55555443    1  356777777778999999999      999999999999999873

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.79  E-value=9.4e-20  Score=177.59  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=53.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI  104 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (358)
                      ++++|+|+||||||+||+.+.|.|+++++.++..+  +.++.|+++.+...+.++.....++++
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~--v~~~~vd~~~~~~l~~~~~v~~~Pt~~   91 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTENQDLCMEHNIPGFPSLK   91 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHhcCCCcCCEEE
Confidence            48999999999999999999999999999997753  889999999888888888777666543

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.79  E-value=1.4e-18  Score=149.33  Aligned_cols=117  Identities=13%  Similarity=0.058  Sum_probs=90.2

Q ss_pred             hhccCCcee-cCC-CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          148 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       148 ~~~~p~f~l-~~~-g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      +..+|+|.+ +.+ |+.+++++++||+|||+||++||++|+.++|.|++++++|++   .++.|++|++|.       +.
T Consensus        23 ~~~~p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~---~g~~vv~v~~d~~~~~e~d~~   99 (208)
T 2f8a_A           23 MQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKN   99 (208)
T ss_dssp             CCCGGGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCH
T ss_pred             cCccCceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccC---CCeEEEEEECCcccccCCCCH
Confidence            567899998 888 999999999999999999999999999999999999999986   689999999872       34


Q ss_pred             HHHHHhhh------cCCccccccCch----------hHHHHHHHc-------------------------CCCceeeEEE
Q 018266          219 KEFDLNHS------IMPWLAIPYEDR----------ARQDLCRIF-------------------------NIKGIPALVL  257 (358)
Q Consensus       219 ~~~~~~~~------~~~~~~~~~~~~----------~~~~l~~~~-------------------------~v~~~P~~~l  257 (358)
                      +...++++      .+. ..+|...+          ....+...+                         ++...|+.+|
T Consensus       100 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~p~tfl  178 (208)
T 2f8a_A          100 EEILNSLKYVRPGGGFE-PNFMLFEKCEVNGAGAHPLFAFLREALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFL  178 (208)
T ss_dssp             HHHHHHHHHTSSCTTCC-CSSEEBCCCCCSSTTCCHHHHHHHHHSCSCTTCSSCCCSSGGGCCSSSCCTTCCCSTTCEEE
T ss_pred             HHHHHHHHhcccccccc-cceEEEEEeecCCCCccHHHHHHHhcCCCccccchhhccccccccccccccCccccCceEEE
Confidence            66666665      332 33443211          111222222                         2566799999


Q ss_pred             ECCCCcEEecC
Q 018266          258 IGPDGKTISTN  268 (358)
Q Consensus       258 id~~G~v~~~~  268 (358)
                      ||++|+|+.+.
T Consensus       179 ID~~G~i~~~~  189 (208)
T 2f8a_A          179 VGPDGVPLRRY  189 (208)
T ss_dssp             ECTTSCEEEEE
T ss_pred             EcCCCcEEEEe
Confidence            99999999883

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.78  E-value=4.4e-19  Score=149.04  Aligned_cols=119  Identities=16%  Similarity=0.162  Sum_probs=91.8

Q ss_pred             HhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------
Q 018266          145 QLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------  216 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------  216 (358)
                      +..+...|+|.+ +.+|+.+++++++||+|||+||++||++|+.++|.|.+++++|++   .++.|++|++|.       
T Consensus        12 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~---~~~~vi~is~d~~~~~~~d   88 (180)
T 3kij_A           12 KPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGP---SHFSVLAFPCNQFGESEPR   88 (180)
T ss_dssp             CCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTT---TSEEEEEEECCCSTTCCCS
T ss_pred             cCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhcc---CCeEEEEEECCccccCCCC
Confidence            345778899999 999999999999999999999999999999999999999999986   789999999875       


Q ss_pred             CHHHHHHhhhc-CCccccccC-----chh-HHHHHHHc--CCCceee----EEEECCCCcEEec
Q 018266          217 DHKEFDLNHSI-MPWLAIPYE-----DRA-RQDLCRIF--NIKGIPA----LVLIGPDGKTIST  267 (358)
Q Consensus       217 ~~~~~~~~~~~-~~~~~~~~~-----~~~-~~~l~~~~--~v~~~P~----~~lid~~G~v~~~  267 (358)
                      +.+.+.++... +. ..+|..     .+. ...+...+  .+.++|+    .+|||++|+|+.+
T Consensus        89 ~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~  151 (180)
T 3kij_A           89 PSKEVESFARKNYG-VTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF  151 (180)
T ss_dssp             CHHHHHHHHHHHHC-CCSCBBCCCCCSSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred             CHHHHHHHHHHhcC-CCCceeeeeeccCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence            66777777765 33 222221     111 11111111  1246888    9999999999987

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.66  E-value=9.1e-21  Score=155.87  Aligned_cols=118  Identities=22%  Similarity=0.351  Sum_probs=103.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHH-HHHHhh-cccCCceEEEEEeCCCCHHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIE-VYNELK-TTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~-l~~~~~-~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+ ++++++ .   .++.|++|++|.+.+.+.+
T Consensus         9 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~---~~~~vv~v~~d~~~~~~~~   85 (159)
T 2ls5_A            9 IGEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDN---ADFALIGIDRDEPLEKVLA   85 (159)
Confidence            5788999998 89999999999999999999999999999999999998 988886 4   7899999999977777777


Q ss_pred             hhhcCCccccccCchhHHHHHHHcC--CCceeeEEEECCCCcEEecC
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFN--IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~--v~~~P~~~lid~~G~v~~~~  268 (358)
                      +...+++ .+|...+....+.+.|+  +.++|++++||++|+++.+.
T Consensus        86 ~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~P~~~lid~~G~i~~~~  131 (159)
T 2ls5_A           86 FAKSTGV-TYPLGLDPGADIFAKYALRDAGITRNVLIDREGKIVKLT  131 (159)
Confidence            7776653 67777777889999999  56699999999999999873

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.78  E-value=2.9e-19  Score=164.86  Aligned_cols=118  Identities=18%  Similarity=0.201  Sum_probs=104.5

Q ss_pred             hhhhccCCce-----e-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC----
Q 018266          146 LLAIEGRDYV-----L-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD----  215 (358)
Q Consensus       146 ~~~~~~p~f~-----l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d----  215 (358)
                      .+|.++|+|.     + +.+|+.+++++++||+|||+||++||++|+.++|.|.+++++|++   .++.|++|++|    
T Consensus        52 ~vG~~aPdF~~~~~wL~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~---~~v~vi~Vs~d~~~~  128 (352)
T 2hyx_A           52 ESCGTAPDLKGITGWLNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKD---SGLAVIGVHTPEYAF  128 (352)
T ss_dssp             CCCCBCCCCCSCCEEESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEECCSSGG
T ss_pred             CCCCcCCCccccccccCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhc---CCeEEEEEECCcccc
Confidence            4588899999     7 889999999999999999999999999999999999999999986   68999999986    


Q ss_pred             -CCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          216 -RDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                       .+.+.+.+++..++ +.+|+..+....+++.|++.++|+++|||++|+|+.+
T Consensus       129 ~d~~~~~~~~~~~~~-l~fpv~~D~~~~l~~~ygV~~~Pt~~lID~~G~Iv~~  180 (352)
T 2hyx_A          129 EKVPGNVAKGAANLG-ISYPIALDNNYATWTNYRNRYWPAEYLIDATGTVRHI  180 (352)
T ss_dssp             GGCHHHHHHHHHHHT-CCSCEEECTTSHHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred             cCCHHHHHHHHHHcC-CCccEEeCCcHHHHHHcCCCccCEEEEEeCCCeEEEE
Confidence             35678888887655 3466666767889999999999999999999999987

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.78  E-value=1.8e-18  Score=147.83  Aligned_cols=123  Identities=18%  Similarity=0.277  Sum_probs=98.5

Q ss_pred             Hhhhhcc--CCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---C
Q 018266          145 QLLAIEG--RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---D  217 (358)
Q Consensus       145 ~~~~~~~--p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~  217 (358)
                      ..+|..+  |+|.+ +.+|+.+++++++||++||+||++||++ |..++|.|.++++++....+.++.|++|++|.   +
T Consensus        13 ~~~g~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~   92 (200)
T 2b7k_A           13 RGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDS   92 (200)
T ss_dssp             ---CCCCCCCCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCC
T ss_pred             hccCCCCcCCCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCC
Confidence            3456664  99999 8999999999999999999999999998 99999999999999874113589999999995   5


Q ss_pred             HHHHHHhhhcCC--ccccccCchhHHHHHHHcCCC-cee---------------eEEEECCCCcEEec
Q 018266          218 HKEFDLNHSIMP--WLAIPYEDRARQDLCRIFNIK-GIP---------------ALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~v~-~~P---------------~~~lid~~G~v~~~  267 (358)
                      .+.+.++...++  |..++...+....+++.|++. +.|               +++|||++|+|+.+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~  160 (200)
T 2b7k_A           93 PAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  160 (200)
T ss_dssp             HHHHHHHHTTSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHcCCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEE
Confidence            677777777553  555555566678899999997 444               78999999999987

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.78  E-value=6.1e-19  Score=145.72  Aligned_cols=116  Identities=16%  Similarity=0.071  Sum_probs=97.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||+ +||++|..++|.|++++++|     .+++|++|+.|. .+...++
T Consensus        18 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~-----~~v~vv~is~d~-~~~~~~~   91 (163)
T 1psq_A           18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDL-PFAQKRW   91 (163)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHHH
T ss_pred             CCCCCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCcEEEEEECCC-HHHHHHH
Confidence            5888999999 89999999999999999999995 99999999999999998877     468999999985 4555666


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCC----c--eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIK----G--IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~----~--~P~~~lid~~G~v~~~~  268 (358)
                      .+.++...+|+..| ....+++.|++.    +  .|+++|||++|+|+++.
T Consensus        92 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  142 (163)
T 1psq_A           92 CGAEGLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             HHHHTCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             HHhcCCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEE
Confidence            66544325676666 677899999987    3  49999999999999884

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.78  E-value=5.3e-19  Score=146.69  Aligned_cols=117  Identities=15%  Similarity=0.223  Sum_probs=91.9

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      .|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .++.|++|++|.       +.
T Consensus         8 ~g~~~p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~vs~d~~~~~~~~~~   84 (170)
T 2p5q_A            8 NPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKD---QGLEILAFPCNQFGEEEPGTN   84 (170)
T ss_dssp             --CCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSCH
T ss_pred             CCccccceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhcc---CCEEEEEEECCCCCCCCCCCH
Confidence            5788999999 999999999999999999999999999999999999999999986   679999999973       56


Q ss_pred             HHHHHhhh-cCCccccccC--chhH----HHHH-----HHcCC--Ccee---eEEEECCCCcEEec
Q 018266          219 KEFDLNHS-IMPWLAIPYE--DRAR----QDLC-----RIFNI--KGIP---ALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~-~~~~~~~~~~--~~~~----~~l~-----~~~~v--~~~P---~~~lid~~G~v~~~  267 (358)
                      +.+.++.. .+. ..+|..  .|..    ..+.     ..+++  .++|   +++|||++|+|+.+
T Consensus        85 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~  149 (170)
T 2p5q_A           85 DQITDFVCTRFK-SEFPIFDKIDVNGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR  149 (170)
T ss_dssp             HHHHHHHHHHTC-CCSCBBCCCBSSSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHhcC-CCceeEeeeccCCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence            67777766 333 223332  1111    1122     23467  7888   99999999999987

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.78  E-value=7.3e-19  Score=149.56  Aligned_cols=118  Identities=13%  Similarity=0.284  Sum_probs=102.5

Q ss_pred             hhhccCCcee--cCCCceeeecccCCc-EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------C
Q 018266          147 LAIEGRDYVL--SRDHRKITVSELAGK-TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------R  216 (358)
Q Consensus       147 ~~~~~p~f~l--~~~g~~~~l~~~~~k-~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~  216 (358)
                      +|..+|+|.+  +.+|+.+++++++|| +++|+||++||++|+.++|.|.+++++|++   .++.|++|++|       .
T Consensus        20 ~g~~~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~---~~v~vv~v~~d~~~~~~~d   96 (196)
T 2ywi_A           20 LGKQAPPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMP---KGVSFVAINSNDAEQYPED   96 (196)
T ss_dssp             TTCBCCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEECSCTTTCGGG
T ss_pred             cCCcCCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHh---CCcEEEEEECCcccccccc
Confidence            5788999997  589999999999998 599999999999999999999999999986   67999999997       4


Q ss_pred             CHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          217 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +.+.+.++...++ +.+|+..+....+++.|++.++|+++|||++|++++++
T Consensus        97 ~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~~~  147 (196)
T 2ywi_A           97 SPENMKKVAEELG-YPFPYLYDETQEVAKAYDAACTPDFYIFDRDLKCVYRG  147 (196)
T ss_dssp             SHHHHHHHHHHHT-CCSCEEECSSCHHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred             CHHHHHHHHHHcC-CCceEEECCchHHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence            5677777777654 35666666677899999999999999999999999873

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.78  E-value=1e-18  Score=145.45  Aligned_cols=115  Identities=14%  Similarity=0.145  Sum_probs=84.1

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-------CCHH
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-------RDHK  219 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-------~~~~  219 (358)
                      +..+|+|.+ +.+|+.+++++++||+++|+||++||++|+ ++|.|.+++++|++   .++.|++|++|       .+.+
T Consensus         9 ~~~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~d~~~   84 (171)
T 3cmi_A            9 MSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKD---EGFTIIGFPCNQFGHQEPGSDE   84 (171)
T ss_dssp             -CGGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGG---GTEEEEEEEECSCC--------
T ss_pred             hhheeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhcc---CCeEEEEEECcccCCCCCCCHH
Confidence            457889998 999999999999999999999999999999 99999999999986   67999999986       3445


Q ss_pred             HHHHhh-hcCCccccccCch--h--------HHH-HHHHcCCCcee------eEEEECCCCcEEec
Q 018266          220 EFDLNH-SIMPWLAIPYEDR--A--------RQD-LCRIFNIKGIP------ALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~~~~~~-~~~~~~~~~~~~~--~--------~~~-l~~~~~v~~~P------~~~lid~~G~v~~~  267 (358)
                      .+.++. ..++ +.+|...+  .        ... ..+.|++.++|      +++|||++|+|+.+
T Consensus        85 ~~~~~~~~~~~-~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           85 EIAQFCQLNYG-VTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             ----------C-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHHHHhccC-CCceEEeeccCCCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence            666666 4433 23343321  0        011 12468999999      99999999999987

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.78  E-value=2.6e-18  Score=142.99  Aligned_cols=141  Identities=19%  Similarity=0.236  Sum_probs=108.7

Q ss_pred             hhhccC-Ccee-cCCCceeeecccCCcEEEEEEeccCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHH
Q 018266          147 LAIEGR-DYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEF  221 (358)
Q Consensus       147 ~~~~~p-~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~  221 (358)
                      +|.++| +|.+ +.+|+++++++++||+++|+||++||+ +|..+++.|.+++++++. .+.+++||+|++|.  +.+.+
T Consensus         3 ~G~~~P~~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~-~~~~~~vv~is~d~~d~~~~~   81 (170)
T 3me7_A            3 LGTYVPGDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGT-PGKDFWVITFTFDPKDTLEDI   81 (170)
T ss_dssp             TTCBCCTTCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCC-BTTTBEEEEEECCTTCCHHHH
T ss_pred             CCCcCCCCeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhh-cCCceEEEEEECCCCCCHHHH
Confidence            588999 9999 999999999999999999999999998 599999999999999964 34679999999984  55677


Q ss_pred             HHhhhcCC-----ccc-cccCchhHHHHHHHcCCC---------ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchh
Q 018266          222 DLNHSIMP-----WLA-IPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTES  286 (358)
Q Consensus       222 ~~~~~~~~-----~~~-~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~  286 (358)
                      .++...++     |.. +....+....+++.||+.         ..|+++|||++|+|+..       ++|..      .
T Consensus        82 ~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~-------~~g~~------~  148 (170)
T 3me7_A           82 KRFQKEYGIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDY-------IYGVN------Y  148 (170)
T ss_dssp             HHHHHHTTCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEE-------EESSS------C
T ss_pred             HHHHHHcCCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEE-------EeCCC------C
Confidence            77776554     221 122335677899987753         45899999999999976       24432      1


Q ss_pred             hHHHHHHHHHHhcCC
Q 018266          287 RIAEIETALKKEGDA  301 (358)
Q Consensus       287 ~~~~L~~~l~~~~~~  301 (358)
                      ..+++.+.|++.+..
T Consensus       149 ~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          149 NYLEFVNALRLARGE  163 (170)
T ss_dssp             CHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhhcc
Confidence            255666667766553

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.78  E-value=1.6e-18  Score=152.16  Aligned_cols=119  Identities=13%  Similarity=0.178  Sum_probs=100.3

Q ss_pred             hhhhccCCcee-c---CCCceeeecccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHH
Q 018266          146 LLAIEGRDYVL-S---RDHRKITVSELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~---~~g~~~~l~~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~  220 (358)
                      .+|.++|+|.+ +   .+|+++++++++||+++|+||+ +||++|..++|.|.+++++|++   .+++|++|++|.. +.
T Consensus        49 ~vG~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~---~gv~vv~Is~D~~-~~  124 (240)
T 3qpm_A           49 KISKPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRA---INTEVVACSVDSQ-FT  124 (240)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCH-HH
T ss_pred             CCCCCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHH---CCCEEEEEECCCH-HH
Confidence            46899999996 3   3456999999999999999999 9999999999999999999986   7899999999863 34


Q ss_pred             HHHhhhcC------CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ..++....      ..+.+|+..|....+++.|++.      .+|+++|||++|+|+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~  184 (240)
T 3qpm_A          125 HLAWIITPRKQGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT  184 (240)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhhcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence            44444432      2466777778788999999997      689999999999999883

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.78  E-value=5.6e-19  Score=146.40  Aligned_cols=117  Identities=13%  Similarity=0.106  Sum_probs=90.0

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .++.|++|++|.       +.
T Consensus         7 ~g~~~p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~~~vv~v~~d~~~~~~~~~~   83 (169)
T 2v1m_A            7 SWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVG---KGLRILAFPCNQFGGQEPWAE   83 (169)
T ss_dssp             CCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred             CCcccccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhc---CCeEEEEEECCccCCCCCCCH
Confidence            4778999999 999999999999999999999999999999999999999999986   679999999973       35


Q ss_pred             HHHHHhh-hcCCccccccCc--hhHH----HHH-----HHcC-----CCceeeEEEECCCCcEEec
Q 018266          219 KEFDLNH-SIMPWLAIPYED--RARQ----DLC-----RIFN-----IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~-~~~~~~~~~~~~--~~~~----~l~-----~~~~-----v~~~P~~~lid~~G~v~~~  267 (358)
                      +.+.+++ ..++ ..+|...  +...    .+.     ..++     +..+|+++|||++|+++.+
T Consensus        84 ~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~i~~~P~~~lid~~G~i~~~  148 (169)
T 2v1m_A           84 AEIKKFVTEKYG-VQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNNIKWNFSKFLVDRQGQPVKR  148 (169)
T ss_dssp             HHHHHHHHHHHC-CCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHhcC-CCCceEEEEeecCccccHHHHHHHhhcCCccCCcccccceEEEECCCCCEEEE
Confidence            6666663 4332 1233221  1111    111     1135     5567999999999999987

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.77  E-value=8.1e-19  Score=145.31  Aligned_cols=116  Identities=10%  Similarity=0.056  Sum_probs=99.4

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|.+++++|     .+++|++|+.|. .+...++
T Consensus        19 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~-----~~v~vv~Is~d~-~~~~~~~   92 (165)
T 1q98_A           19 VGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL-----SNTIVLCISADL-PFAQARF   92 (165)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS-----TTEEEEEEESSC-HHHHTTC
T ss_pred             CCCCCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc-----CCCEEEEEeCCC-HHHHHHH
Confidence            5788999999 8999999999999999999999 899999999999999999988     468999999974 5566777


Q ss_pred             hhcCCccccccCchh-HHHHHHHcCCCc---------eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~  268 (358)
                      .+.+++..+|+..|. ...+++.|++..         .|+++|||++|+|+++.
T Consensus        93 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  146 (165)
T 1q98_A           93 CGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQ  146 (165)
T ss_dssp             TTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHcCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEE
Confidence            776654256776665 688999999864         59999999999999884

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.77  E-value=5.9e-19  Score=145.71  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=101.4

Q ss_pred             hhhccCCcee---cCCC--ceeeecc-cCCcEEEEEEe-ccCCcccH-hhHHHHHHHHHHhhcccCCceE-EEEEeCCCC
Q 018266          147 LAIEGRDYVL---SRDH--RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFE-VVLVSTDRD  217 (358)
Q Consensus       147 ~~~~~p~f~l---~~~g--~~~~l~~-~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~~  217 (358)
                      +|.++|+|.+   +.+|  +.+++++ ++||+++|+|| ++||++|. .++|.|.+++++|++   .+++ |++|+.| +
T Consensus         6 ~G~~aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~---~~v~~vv~Is~d-~   81 (162)
T 1tp9_A            6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS---KGVTEILCISVN-D   81 (162)
T ss_dssp             TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCCEEEEESS-C
T ss_pred             CCCCCCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEECC-C
Confidence            5888999987   6789  9999999 89999999999 89999999 999999999999986   7899 9999998 4


Q ss_pred             HHHHHHhhhcCCcc-ccccCchhHHHHHHHcCCC------c-----eeeEEEECCCCcEEecC
Q 018266          218 HKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK------G-----IPALVLIGPDGKTISTN  268 (358)
Q Consensus       218 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~------~-----~P~~~lid~~G~v~~~~  268 (358)
                      .+...++.+.++.. .+|+..|....+++.||+.      +     .|+++||| +|+|++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~  143 (162)
T 1tp9_A           82 PFVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAAN  143 (162)
T ss_dssp             HHHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEE
T ss_pred             HHHHHHHHHhcCCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEE
Confidence            56667777766532 5788778788999999986      2     79999999 99999883

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.77  E-value=5.3e-19  Score=146.57  Aligned_cols=115  Identities=12%  Similarity=0.036  Sum_probs=98.6

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|.+++++      .++.|++|+.| +.+...++
T Consensus        22 ~G~~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~------~~~~vv~is~d-~~~~~~~~   94 (166)
T 3p7x_A           22 EGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK------EEGIVLTISAD-LPFAQKRW   94 (166)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT------TTSEEEEEESS-CHHHHHHH
T ss_pred             CCCCCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc------CCCEEEEEECC-CHHHHHHH
Confidence            5889999999 9999999999999999999999 78999999999999888665      46899999988 45667777


Q ss_pred             hhcCCccccccCchh-HHHHHHHcCCCc------eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRA-RQDLCRIFNIKG------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~-~~~l~~~~~v~~------~P~~~lid~~G~v~~~~  268 (358)
                      ...+....+|+..|. ...+.+.|++..      +|+++|||++|+|++++
T Consensus        95 ~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~  145 (166)
T 3p7x_A           95 CASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKE  145 (166)
T ss_dssp             HHHHTCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEE
T ss_pred             HHHcCCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence            776554357777776 679999999985      89999999999999873

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.77  E-value=2.1e-18  Score=146.20  Aligned_cols=116  Identities=18%  Similarity=0.220  Sum_probs=92.7

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHH
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHK  219 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~  219 (358)
                      +..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .+++|++|++|.       +.+
T Consensus        25 ~~~~p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~~~~~~~  101 (190)
T 2vup_A           25 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKS---QGFTVLAFPCNQFGGQEPGNEE  101 (190)
T ss_dssp             CCSGGGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTCEEEEEECCCSTTCCCSCHH
T ss_pred             CCcccCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhc---CCeEEEEEEcCccCCCCCCCHH
Confidence            567899998 899999999999999999999999999999999999999999986   679999999983       566


Q ss_pred             HHHHhh-hcCCccccccCc--hhHH----HH-----HHHcCCCcee------eEEEECCCCcEEec
Q 018266          220 EFDLNH-SIMPWLAIPYED--RARQ----DL-----CRIFNIKGIP------ALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~~~~~~-~~~~~~~~~~~~--~~~~----~l-----~~~~~v~~~P------~~~lid~~G~v~~~  267 (358)
                      .+.++. ..+. ..+|...  |...    .+     .+.|++.++|      +++|||++|+|+.+
T Consensus       102 ~~~~~~~~~~~-~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~  166 (190)
T 2vup_A          102 EIKEFVCTKFK-AEFPIMAKINVNGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER  166 (190)
T ss_dssp             HHHHHHHHHHC-CCSCBBCCCBSSSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHhcC-CCeEEEeecccCcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence            777776 4332 1233321  1111    11     2347899999      99999999999987

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.77  E-value=1.4e-18  Score=148.47  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=101.0

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|..+|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|.+++++|     .+++|++|+.| +.+...++
T Consensus        54 ~G~~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~-----~~v~vv~Is~D-~~~~~~~~  127 (200)
T 3zrd_A           54 IGDKAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL-----ENTVVLCISSD-LPFAQSRF  127 (200)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS-----TTEEEEEEESS-CHHHHTTC
T ss_pred             CCCCCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh-----CCCEEEEEECC-CHHHHHHH
Confidence            5889999999 9999999999999999999999 689999999999999999988     35999999998 45667777


Q ss_pred             hhcCCccccccCchh-HHHHHHHcCCC---------ceeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRA-RQDLCRIFNIK---------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~-~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~  268 (358)
                      ...++...+|+..|. ...+.+.|++.         ..|+++|||++|+|+++.
T Consensus       128 ~~~~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~  181 (200)
T 3zrd_A          128 CGAEGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSE  181 (200)
T ss_dssp             TTTTTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHcCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEE
Confidence            776654367777777 78999999986         369999999999999874

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.77  E-value=1.3e-18  Score=146.82  Aligned_cols=117  Identities=11%  Similarity=0.044  Sum_probs=91.7

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++||++|+.++|.|.+++++|++   .+++|++|++|.       +.
T Consensus        25 ~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~is~d~~~~~~~~~~  101 (185)
T 2gs3_A           25 CARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGSN  101 (185)
T ss_dssp             GCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCTTTTCCCSCH
T ss_pred             CCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhc---CCeEEEEEECcccCCCCCCCH
Confidence            5788999999 999999999999999999999999999999999999999999986   689999999873       45


Q ss_pred             HHHHHhhhcCCccccccCc--hh----HHHHHHHc-------C-----CCceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMPWLAIPYED--RA----RQDLCRIF-------N-----IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~--~~----~~~l~~~~-------~-----v~~~P~~~lid~~G~v~~~  267 (358)
                      +.+.++...++. .+|...  +.    ...+...+       +     ++.+|+++|||++|+|+++
T Consensus       102 ~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  167 (185)
T 2gs3_A          102 EEIKEFAAGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  167 (185)
T ss_dssp             HHHHHHHHHTTC-CSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHcCC-CCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEe
Confidence            667777665442 234321  11    11122211       4     3447999999999999987

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.77  E-value=5.4e-19  Score=144.47  Aligned_cols=116  Identities=16%  Similarity=0.241  Sum_probs=96.9

Q ss_pred             HhhhhccCCcee-cCCC--------ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          145 QLLAIEGRDYVL-SRDH--------RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~~g--------~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      ..+|..+|+|.+ +.+|        +.+++++++||+++|+||++||++|+.+.|.|.+++++      .++.+++|++|
T Consensus         8 ~~~g~~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~------~~v~~v~v~~~   81 (156)
T 1kng_A            8 ALIGRPAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD------KRFQLVGINYK   81 (156)
T ss_dssp             ----CBCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC------TTSEEEEEEES
T ss_pred             HHhCCCCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc------CCeEEEEEECC
Confidence            356889999998 8888        89999999999999999999999999999999887543      45899999999


Q ss_pred             CCHHHHHHhhhcCCccccc-cCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          216 RDHKEFDLNHSIMPWLAIP-YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.+.+.++...+++ .+| +..+....+++.|++.++|+++++|++|+++.+
T Consensus        82 ~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~~id~~G~i~~~  133 (156)
T 1kng_A           82 DAADNARRFLGRYGN-PFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYK  133 (156)
T ss_dssp             CCHHHHHHHHHHHCC-CCSEEEEETTSHHHHHTTCCSSCEEEEECTTSBEEEE
T ss_pred             CCHHHHHHHHHHcCC-CCceeeeCchhHHHHhcCcCccCeEEEEcCCCCEEEE
Confidence            988888888876553 333 444556789999999999999999999999986

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.77  E-value=2.2e-18  Score=142.92  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=100.4

Q ss_pred             hhhccCCcee--cCCCceeeeccc-CCcEEEEEEe-ccCCcccHh-hHHHHHHHHHHhhcccCCce-EEEEEeCCCCHHH
Q 018266          147 LAIEGRDYVL--SRDHRKITVSEL-AGKTIGLYFG-AHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE  220 (358)
Q Consensus       147 ~~~~~p~f~l--~~~g~~~~l~~~-~~k~vlv~F~-a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~  220 (358)
                      +|.++|+|.+  +.+|+.++++++ +||+++|+|| ++||++|.. ++|.|.+++++|++   .++ +|++|+.| +.+.
T Consensus         5 ~G~~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d-~~~~   80 (167)
T 2wfc_A            5 EGDKLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHG---KGVDIIACMAVN-DSFV   80 (167)
T ss_dssp             TTCBCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHH---TTCCEEEEEESS-CHHH
T ss_pred             CCCcCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEeCC-CHHH
Confidence            5788999998  678999999998 9998888885 999999999 99999999999986   789 99999998 4566


Q ss_pred             HHHhhhcCCcc-ccccCchhHHHHHHHcCCCce-----------eeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMPWL-AIPYEDRARQDLCRIFNIKGI-----------PALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~~~-----------P~~~lid~~G~v~~~~  268 (358)
                      ..++.+.++.. .+|+..|....+++.||+...           |+++|| ++|+|++..
T Consensus        81 ~~~~~~~~~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~  139 (167)
T 2wfc_A           81 MDAWGKAHGADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVN  139 (167)
T ss_dssp             HHHHHHHTTCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHhcCCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEE
Confidence            67777766532 378888888899999998754           999999 999999873

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.76  E-value=1.4e-18  Score=168.26  Aligned_cols=94  Identities=17%  Similarity=0.412  Sum_probs=69.6

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +|+|+|+|||+||++|+.+.|.|.+++++++.  ..++.++.|..+..                        .+.+.|+|
T Consensus       370 ~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~~v~~~~id~~~~------------------------~~~~~~~v  423 (481)
T 3f8u_A          370 NKDVLIEFYAPWCGHCKNLEPKYKELGEKLSK--DPNIVIAKMDATAN------------------------DVPSPYEV  423 (481)
T ss_dssp             TCEEEEEEECTTBHHHHHHHHHHHHHHHHTTT--CSSEEEEEEETTSS------------------------CCCTTCCC
T ss_pred             CCcEEEEEecCcChhHHHhhHHHHHHHHHhcc--CCCEEEEEEECCch------------------------hhHhhCCC
Confidence            79999999999999999999999999999974  23666666666542                        45578999


Q ss_pred             CceeeEEEECCCCcE-EecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          250 KGIPALVLIGPDGKT-ISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       250 ~~~P~~~lid~~G~v-~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      .++||+++++++|++ +.+       ..|...       .+.|.+.+++.+..-+
T Consensus       424 ~~~Pt~~~~~~~~~~~~~~-------~~G~~~-------~~~l~~~l~~~~~~~~  464 (481)
T 3f8u_A          424 RGFPTIYFSPANKKLNPKK-------YEGGRE-------LSDFISYLQREATNPP  464 (481)
T ss_dssp             CSSSEEEEECTTCTTSCEE-------CCSCCS-------HHHHHHHHHHHCSSCC
T ss_pred             cccCEEEEEeCCCeEeeeE-------eCCCCC-------HHHHHHHHHHhcCCcc
Confidence            999999999887763 112       233322       5667777777665433

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.76  E-value=7.8e-19  Score=147.74  Aligned_cols=136  Identities=12%  Similarity=0.130  Sum_probs=106.3

Q ss_pred             HhhhhccCCcee-cC--CC-ceeeecc-cCCcE-EEEEEeccCCcccHh-hHHHHHHHHHHhhcccCCceE-EEEEeCCC
Q 018266          145 QLLAIEGRDYVL-SR--DH-RKITVSE-LAGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCFE-VVLVSTDR  216 (358)
Q Consensus       145 ~~~~~~~p~f~l-~~--~g-~~~~l~~-~~~k~-vlv~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~  216 (358)
                      ..+|.++|+|++ +.  +| +.+++++ ++||+ ||++||++|||+|.. ++|.|.+++++|++   .++. |++|+.|.
T Consensus        26 l~vG~~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~---~gv~~vv~Is~d~  102 (184)
T 3uma_A           26 IAVGDKLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILA---RGVDDIAVVAVND  102 (184)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSC
T ss_pred             CCCCCCCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHH---cCCCEEEEEECCC
Confidence            346899999999 66  88 9999999 89985 556677999999999 79999999999986   7888 99999984


Q ss_pred             CHHHHHHhhhcCCcc-ccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCc
Q 018266          217 DHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT  284 (358)
Q Consensus       217 ~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~  284 (358)
                       .....++.+.++.. .+|+..|....+++.||+.           ..|+.+||| +|+|++..       .+...-+..
T Consensus       103 -~~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~-------~~~~~g~~~  173 (184)
T 3uma_A          103 -LHVMGAWATHSGGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALN-------IEESPGQAT  173 (184)
T ss_dssp             -HHHHHHHHHHHTCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEE-------ECSSTTCCS
T ss_pred             -HHHHHHHHHHhCCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEE-------EeCCCCCCc
Confidence             55566666655543 4888888889999999985           347799996 99999884       444333444


Q ss_pred             hhhHHHHH
Q 018266          285 ESRIAEIE  292 (358)
Q Consensus       285 ~~~~~~L~  292 (358)
                      .+..+++.
T Consensus       174 ~~~~~~vL  181 (184)
T 3uma_A          174 ASGAAAML  181 (184)
T ss_dssp             TTSHHHHH
T ss_pred             CCCHHHHH
Confidence            44455543

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.76  E-value=1.1e-18  Score=146.89  Aligned_cols=118  Identities=12%  Similarity=0.071  Sum_probs=93.5

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------C
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------D  217 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~  217 (358)
                      .+|..+|+|.+ +.+|+.+++++++||++||+||++||++|+.++|.|.+++++|++   .++.|++|++|.       +
T Consensus        22 ~~g~~~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~---~~v~vv~vs~d~~~~~e~~~   98 (183)
T 2obi_A           22 RCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE---CGLRILAFPCNQFGKQEPGS   98 (183)
T ss_dssp             GGCCSGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSC
T ss_pred             cccCcccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhc---CCeEEEEEECCCCCCCCCCC
Confidence            35888999999 999999999999999999999999999999999999999999986   679999999873       5


Q ss_pred             HHHHHHhhhcCCccccccCc--hhHH----HHHHHc-------C-----CCceeeEEEECCCCcEEec
Q 018266          218 HKEFDLNHSIMPWLAIPYED--RARQ----DLCRIF-------N-----IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~--~~~~----~l~~~~-------~-----v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.+.++...+.. .+|...  +...    .+.+.+       +     +..+|+++|||++|+|+.+
T Consensus        99 ~~~~~~~~~~~~~-~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~  165 (183)
T 2obi_A           99 NEEIKEFAAGYNV-KFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKR  165 (183)
T ss_dssp             HHHHHHHHHTTTC-CSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEE
T ss_pred             HHHHHHHHHHcCC-CceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEE
Confidence            6777777776542 344332  1111    122221       4     4457999999999999987

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.76  E-value=2.6e-18  Score=143.66  Aligned_cols=115  Identities=18%  Similarity=0.153  Sum_probs=95.9

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+||++| |++|+.++|.|.+++++      .++.|++|++|. .+...++
T Consensus        20 ~G~~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~D~-~~~~~~~   92 (175)
T 1xvq_A           20 VGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDL-PFAQKRF   92 (175)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSC-HHHHTTC
T ss_pred             cCCcCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEECCC-HHHHHHH
Confidence            5888999999 8999999999999999999999999 99999999999999887      348999999975 4556666


Q ss_pred             hhcCCccccccCchhHHHHHHHcCCCce---------eeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDRARQDLCRIFNIKGI---------PALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~~~v~~~---------P~~~lid~~G~v~~~~  268 (358)
                      .+.+++..+|+..|....+.+.|++...         |+++|||++|+|+++.
T Consensus        93 ~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~  145 (175)
T 1xvq_A           93 CGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  145 (175)
T ss_dssp             C------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             HHHcCCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEE
Confidence            6666543677777766889999999887         9999999999999883

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.76  E-value=8.3e-18  Score=144.86  Aligned_cols=115  Identities=19%  Similarity=0.157  Sum_probs=87.5

Q ss_pred             hhccCCcee-cCC-CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          148 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       148 ~~~~p~f~l-~~~-g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      ...+|+|.+ +.+ |+.+++++++||+|||+|||+||++|+ ++|.|++++++|++   .+++||+|++|.       +.
T Consensus        32 ~~~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~---~g~~Vlgvs~d~f~~~e~~~~  107 (215)
T 2i3y_A           32 KGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKP---YGLVVLGFPCNQFGKQEPGDN  107 (215)
T ss_dssp             CCCGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGG---GTEEEEEEECCCSTTCCCSCH
T ss_pred             cCCcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhcc---CCeEEEEEEccccCcCCCCCH
Confidence            456889999 898 999999999999999999999999999 99999999999986   789999999762       34


Q ss_pred             HHHHHhhh------cCCccccccCch-----h-----HHHHHHHc-------C--------------CCceeeEEEECCC
Q 018266          219 KEFDLNHS------IMPWLAIPYEDR-----A-----RQDLCRIF-------N--------------IKGIPALVLIGPD  261 (358)
Q Consensus       219 ~~~~~~~~------~~~~~~~~~~~~-----~-----~~~l~~~~-------~--------------v~~~P~~~lid~~  261 (358)
                      ++..++.+      .+. +.+|+..+     .     ...+....       +              |...|+.+|||++
T Consensus       108 ~~i~~f~~~~~~~~~~~-~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID~~  186 (215)
T 2i3y_A          108 KEILPGLKYVRPGGGFV-PSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPD  186 (215)
T ss_dssp             HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEECTT
T ss_pred             HHHHHHHHhccchhccC-ccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEECCC
Confidence            56666666      443 34554321     0     11122221       1              2233899999999


Q ss_pred             CcEEec
Q 018266          262 GKTIST  267 (358)
Q Consensus       262 G~v~~~  267 (358)
                      |+|+.+
T Consensus       187 G~vv~~  192 (215)
T 2i3y_A          187 GIPVMR  192 (215)
T ss_dssp             SCEEEE
T ss_pred             CeEEEE
Confidence            999988

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.76  E-value=1.8e-18  Score=144.00  Aligned_cols=115  Identities=14%  Similarity=0.140  Sum_probs=97.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|+|| ++||++|..++|.|.++++++     .+++|++|++|. .+...++
T Consensus        23 ~g~~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~-----~~v~vv~Is~d~-~~~~~~~   96 (171)
T 2yzh_A           23 VGDRAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM-----EGVDVTVVSMDL-PFAQKRF   96 (171)
T ss_dssp             TTSBCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSC-HHHHHHH
T ss_pred             CCCcCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc-----CCceEEEEeCCC-HHHHHHH
Confidence            5788999999 8999999999999999999999 899999999999999998877     469999999985 5566667


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCCc---------eeeEEEECCCCcEEecC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIKG---------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~  268 (358)
                      .+.++...+|+..| ....+ +.|++..         +|+++|||++|+|+++.
T Consensus        97 ~~~~~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~  149 (171)
T 2yzh_A           97 CESFNIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQ  149 (171)
T ss_dssp             HHHTTCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHcCCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEE
Confidence            76655325677666 56778 9999852         69999999999999884

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.75  E-value=5.1e-18  Score=149.99  Aligned_cols=120  Identities=13%  Similarity=0.161  Sum_probs=100.6

Q ss_pred             HhhhhccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          145 QLLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       145 ~~~~~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      ..+|.++|+|.+    +.+|+.+++++++||++||+|| ++||++|..++|.|.+++++|++   .+++||+|++|.. +
T Consensus        62 l~vG~~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~---~gv~vv~IS~D~~-~  137 (254)
T 3tjj_A           62 AKISKPAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRS---INTEVVACSVDSQ-F  137 (254)
T ss_dssp             CCTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSCH-H
T ss_pred             cCCCCCCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHH---cCCEEEEEcCCCH-H
Confidence            346899999996    3457899999999999999999 99999999999999999999986   7899999999853 3


Q ss_pred             HHHHhhhcC------CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          220 EFDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 ~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      ...++...+      ..+.+|+..|....+++.|++.      .+|++||||++|+|+++.
T Consensus       138 ~~~~~~~~~~~~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~  198 (254)
T 3tjj_A          138 THLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQIT  198 (254)
T ss_dssp             HHHHHHTSCGGGTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHHhcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEE
Confidence            444444432      1356777778788999999995      589999999999999873

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.75  E-value=2.8e-18  Score=142.91  Aligned_cols=119  Identities=13%  Similarity=0.071  Sum_probs=99.2

Q ss_pred             HhhhhccCCcee--cCCCceeeecc-cCCcEEEE-EEeccCCcccH-hhHHHHHHHHHHhhcccCCceEEEE-EeCCCCH
Q 018266          145 QLLAIEGRDYVL--SRDHRKITVSE-LAGKTIGL-YFGAHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVL-VSTDRDH  218 (358)
Q Consensus       145 ~~~~~~~p~f~l--~~~g~~~~l~~-~~~k~vlv-~F~a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~vv~-v~~d~~~  218 (358)
                      ..+|.++|+|++  +.+|+.+++++ ++||+++| +||++||++|. .++|.|.+++++|++   .+++||+ |+.|. .
T Consensus        15 ~~vG~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~---~gv~vv~~iS~D~-~   90 (173)
T 3mng_A           15 IKVGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVND-A   90 (173)
T ss_dssp             CCTTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSC-H
T ss_pred             CCCCCCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHh---CCCEEEEEEcCCC-H
Confidence            346899999998  58899999999 59986655 55699999999 599999999999986   7899997 99884 5


Q ss_pred             HHHHHhhhcCCcc-ccccCchhHHHHHHHcCCC-------------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-------------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-------------~~P~~~lid~~G~v~~~~  268 (358)
                      +...++.+.+... .+|+..|....+++.||+.             ..|+++||| +|+|++..
T Consensus        91 ~~~~~f~~~~~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~  153 (173)
T 3mng_A           91 FVTGEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALN  153 (173)
T ss_dssp             HHHHHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEE
T ss_pred             HHHHHHHHHhCCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEE
Confidence            5666677666543 4888888889999999985             359999999 99999884

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.75  E-value=8.4e-18  Score=139.86  Aligned_cols=123  Identities=15%  Similarity=0.188  Sum_probs=93.2

Q ss_pred             hHhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH
Q 018266          144 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH  218 (358)
Q Consensus       144 ~~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~  218 (358)
                      ...++.++|+|++ +.+|+++++++++||+|||+||++||+ +|...++.|.++++.+++ .+.++.+|+|++|.   +.
T Consensus         5 ~~P~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~-~~~~v~~v~isvDp~~Dtp   83 (170)
T 4hde_A            5 RKPLNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKE-EKLDVQFVSFSVDPDLDKP   83 (170)
T ss_dssp             CSCCCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCH
T ss_pred             ccCCCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhc-ccccceeEeeecCcccccH
Confidence            3446889999999 999999999999999999999999997 699999999999999976 45679999999985   35


Q ss_pred             HHHHHhhhcCC-----ccccccCc-hh-HHHHHHHcCC----------CceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMP-----WLAIPYED-RA-RQDLCRIFNI----------KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~-----~~~~~~~~-~~-~~~l~~~~~v----------~~~P~~~lid~~G~v~~~  267 (358)
                      +.++++...+.     |..+.... .. .......|++          ...|+++|||++|+|+..
T Consensus        84 ~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~  149 (170)
T 4hde_A           84 ENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKK  149 (170)
T ss_dssp             HHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEE
T ss_pred             HHHHHHHHHcCCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEE
Confidence            66666666442     33333221 11 1222233433          235789999999999876

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.74  E-value=2.3e-18  Score=143.37  Aligned_cols=118  Identities=12%  Similarity=0.119  Sum_probs=97.7

Q ss_pred             hhhhccCCcee-cC----CC-----ceeeeccc-CCc-EEEEEEeccCCcccHhh-HHHHHHHHHHhhcccCCceE-EEE
Q 018266          146 LLAIEGRDYVL-SR----DH-----RKITVSEL-AGK-TIGLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFE-VVL  211 (358)
Q Consensus       146 ~~~~~~p~f~l-~~----~g-----~~~~l~~~-~~k-~vlv~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~-vv~  211 (358)
                      .+|.++|+|.+ +.    +|     +.++++++ +|| +||++||++||++|..+ +|.|.+++++|++   .++. |++
T Consensus         8 ~~g~~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~---~g~~~vv~   84 (171)
T 2pwj_A            8 DILSAASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKA---KGVDSVIC   84 (171)
T ss_dssp             --CCCSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHH---TTCSEEEE
T ss_pred             cccCcCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEE
Confidence            45779999998 55    47     89999996 995 67788999999999999 9999999999986   7889 999


Q ss_pred             EeCCCCHHHHHHhhhcCCc-cccccCchhHHHHHHHcCCCc-----------eeeEEEECCCCcEEecC
Q 018266          212 VSTDRDHKEFDLNHSIMPW-LAIPYEDRARQDLCRIFNIKG-----------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       212 v~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~v~~-----------~P~~~lid~~G~v~~~~  268 (358)
                      |+.|. .+...++.+.+.. ..+|+..|....+++.||+..           .|+.++|| +|+|++..
T Consensus        85 Is~d~-~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~  151 (171)
T 2pwj_A           85 VAIND-PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALN  151 (171)
T ss_dssp             EESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             EeCCC-HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEE
Confidence            99984 5566777777765 478888888889999999853           46788888 99999884

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.74  E-value=3.9e-18  Score=141.70  Aligned_cols=120  Identities=19%  Similarity=0.332  Sum_probs=95.8

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~  220 (358)
                      +.|.++|+|.+ +.+| .+++++++||+++|+||++||++ |+.++|.|.+++++++.....++.|++|++|.   +.+.
T Consensus        11 ~~G~~~p~f~l~~~~g-~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~   89 (172)
T 2k6v_A           11 LLNPKPVDFALEGPQG-PVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEV   89 (172)
T ss_dssp             EEEEEECCCEEECSSS-EEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHH
T ss_pred             ccCCCCCCeEEEcCCC-CCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHH
Confidence            45778999999 8999 99999999999999999999998 99999999999999874100279999999985   3566


Q ss_pred             HHHhhhcCCccccccCchhH---HHHHHHcCC---------------CceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIMPWLAIPYEDRAR---QDLCRIFNI---------------KGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~---~~l~~~~~v---------------~~~P~~~lid~~G~v~~~~  268 (358)
                      +.++...++ ..+++..+..   ..+++.|++               .++|+++||| +|+++.+.
T Consensus        90 ~~~~~~~~~-~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~  153 (172)
T 2k6v_A           90 ADRYAKAFH-PSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLY  153 (172)
T ss_dssp             HHHHHHHHC-TTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEE
T ss_pred             HHHHHHHhC-CCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEE
Confidence            777776544 2344433333   678888775               5789999999 99999873

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.74  E-value=9.4e-18  Score=146.27  Aligned_cols=118  Identities=15%  Similarity=0.159  Sum_probs=99.3

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCc-EEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k-~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      .+|..+|+|.+ +.+| .+++++++|| +++|+|| ++||++|..+++.|.+++++|++   .+++||+|++|.. +...
T Consensus         4 ~iG~~aPdF~l~~~~G-~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~---~~v~vigIS~D~~-~~~~   78 (233)
T 2v2g_A            4 TLGEVFPNFEADSTIG-KLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKK---RGVKLIALSCDNV-ADHK   78 (233)
T ss_dssp             CTTCBCCCCEEEETTC-CEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCH-HHHH
T ss_pred             CCCCCCCCcEEecCCC-CEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---cCCEEEEEcCCCH-HHHH
Confidence            36889999999 8888 8999999998 9999998 99999999999999999999987   7899999999963 3333


Q ss_pred             Hhhh------cCC-ccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEecC
Q 018266          223 LNHS------IMP-WLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~------~~~-~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~  268 (358)
                      ++.+      ... .+.+|+..|....+++.||+.            .+|+++|||++|+|++..
T Consensus        79 ~~~~~i~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  143 (233)
T 2v2g_A           79 EWSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSI  143 (233)
T ss_dssp             HHHHHHHHHHTCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHhhCcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEE
Confidence            3333      231 456788778788999999985            579999999999999873

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.74  E-value=4.2e-18  Score=149.89  Aligned_cols=117  Identities=14%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             hhhccCCcee-cC-CCc--eeeecc-cCCcEEEEEEe-ccCCcccH-hhHHHHHHHHHHhhcccCCce-EEEEEeCCCCH
Q 018266          147 LAIEGRDYVL-SR-DHR--KITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCF-EVVLVSTDRDH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~-~g~--~~~l~~-~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~  218 (358)
                      +|.++|+|.+ +. +|+  .+++++ ++||+++|+|| ++||++|. .++|.|.+++++|++   .++ +|++|+.|. .
T Consensus         5 ~G~~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~---~~~~~vv~is~d~-~   80 (241)
T 1nm3_A            5 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK---YGVDDILVVSVND-T   80 (241)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH---TTCCEEEEEESSC-H
T ss_pred             CCCCCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEEEEcCC-H
Confidence            5889999999 64 677  899999 89999999999 99999999 999999999999986   789 999999985 5


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~  268 (358)
                      +...++.+.++...+|+..|....+++.||+.           ..|+++|| ++|+|++..
T Consensus        81 ~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~  140 (241)
T 1nm3_A           81 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMF  140 (241)
T ss_dssp             HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             HHHHHHHHhcCCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEE
Confidence            66677777766555888888888999999986           45899999 999999873

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.73  E-value=3.6e-17  Score=140.26  Aligned_cols=115  Identities=17%  Similarity=0.094  Sum_probs=86.6

Q ss_pred             hhccCCcee-cCC-CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          148 AIEGRDYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       148 ~~~~p~f~l-~~~-g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      ...+|+|.+ +.+ |+.+++++++||+|||+||++||++| .++|.|++++++|++   .+++||+|++|.       +.
T Consensus        14 ~~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~---~g~~vlgvs~d~f~~~e~~~~   89 (207)
T 2r37_A           14 SGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAP---FGLVILGFPCNQFGKQEPGEN   89 (207)
T ss_dssp             -CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGG---GTEEEEEEECCCBTTCCCSCH
T ss_pred             cCccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhcc---CCEEEEEEECcccCcCCCCCH
Confidence            456889999 899 99999999999999999999999999 799999999999986   789999999762       34


Q ss_pred             HHHHHhhh------cCCccccccCch-----h-----HHHHHHHc-------C--------------CCceeeEEEECCC
Q 018266          219 KEFDLNHS------IMPWLAIPYEDR-----A-----RQDLCRIF-------N--------------IKGIPALVLIGPD  261 (358)
Q Consensus       219 ~~~~~~~~------~~~~~~~~~~~~-----~-----~~~l~~~~-------~--------------v~~~P~~~lid~~  261 (358)
                      +...++.+      .++ +.+|+..+     .     ...+....       +              +...|+.+|||++
T Consensus        90 ~~i~~f~~~~~~~~~~~-~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID~~  168 (207)
T 2r37_A           90 SEILPTLKYVRPGGGFV-PNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPD  168 (207)
T ss_dssp             HHHHHHHHHTSSCTTCC-CSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEECTT
T ss_pred             HHHHHHHHhcchhhccC-ccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEECCC
Confidence            56666766      443 34444321     1     11122221       1              2233899999999


Q ss_pred             CcEEec
Q 018266          262 GKTIST  267 (358)
Q Consensus       262 G~v~~~  267 (358)
                      |+|+.+
T Consensus       169 G~i~~~  174 (207)
T 2r37_A          169 GIPIMR  174 (207)
T ss_dssp             SCEEEE
T ss_pred             CcEEEE
Confidence            999987

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.72  E-value=2.4e-17  Score=143.12  Aligned_cols=119  Identities=15%  Similarity=0.241  Sum_probs=97.0

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCc--EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k--~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  220 (358)
                      .+|..+|+|.+ +.+| .+++++++||  .||++||++||++|..+++.|.+++++|++   .+++||+|++|...  ..
T Consensus         6 ~~G~~aP~F~l~~~~G-~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~IS~D~~~~~~~   81 (224)
T 1prx_A            6 LLGDVAPNFEANTTVG-RIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLA   81 (224)
T ss_dssp             CTTCBCCCCEEEETTE-EEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCcEEecCCC-CEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHH---CCCEEEEEcCCCHHHHHH
Confidence            36889999999 8888 9999999997  566677999999999999999999999986   78999999999643  23


Q ss_pred             HHHhhhcC------CccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEecC
Q 018266          221 FDLNHSIM------PWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       221 ~~~~~~~~------~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~  268 (358)
                      |.+.+...      ..+.+|+..|....+++.||+.            .+|+++|||++|+|+...
T Consensus        82 ~~~~i~~~~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~  147 (224)
T 1prx_A           82 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSI  147 (224)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEE
T ss_pred             HHHHHHHhhCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEE
Confidence            33332211      2356777777788999999984            379999999999999883

>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3

Probab=99.72  E-value=3.9e-18  Score=124.27  Aligned_cols=79  Identities=39%  Similarity=0.812  Sum_probs=74.6

Q ss_pred             CCCCCCCchhhHHHHHHHHHHhcCCCCCccccCCC-ceeeeeecCCceeecCcCCCCcceEEEcCCCCCCCCcccccCcc
Q 018266          277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN  355 (358)
Q Consensus       277 g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~C~e~g~~~~~~~~~~~~~~~~~~~~~~~  355 (358)
                      |+++|||+++++.+|++++.+.-..+|..+.+..| .|.|.+....+|+|+.|++.+.+|.|+|..|||+||+.||+.+.
T Consensus         1 ~~~a~pfte~~~~~~~~~lhe~Ca~lP~~i~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~~~~Y~C~~C~f~lH~~Ca~~p~   80 (89)
T 1v5n_A            1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED   80 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred             CCcccccCHHHHHHHHHHHhHHHHcCCceecCCCCCCCccEEeeCCCeEeCCCCCcCCCcEEEcCCCCCeEcHHhcCCCC
Confidence            67899999999999999999999999999999999 59999998779999999999999999999999999999998754

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.71  E-value=3.2e-17  Score=141.97  Aligned_cols=119  Identities=13%  Similarity=0.180  Sum_probs=96.5

Q ss_pred             hhhhccCCcee-cC--CCceeeecccCCc--EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL-SR--DHRKITVSELAGK--TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~--~g~~~~l~~~~~k--~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      .+|..+|+|.+ +.  +| .+++++++||  .||++||++||++|..+++.|.+++++|++   .+++||+|++|...  
T Consensus         4 ~iG~~aP~F~l~~~~~~G-~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~---~~v~vi~vS~D~~~~~   79 (220)
T 1xcc_A            4 HLGATFPNFTAKASGIDG-DFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESH   79 (220)
T ss_dssp             CTTCBCCCCEECBTTCSS-CEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCcEeecccCCC-cEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH---cCCEEEEEeCCCHHHH
Confidence            36889999999 77  78 8999999998  555566999999999999999999999986   78999999999642  


Q ss_pred             HHHHHhhhc---CCccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~~  268 (358)
                      ..|.+.+..   ...+.+|+..|....+++.||+.            .+|+++|||++|+|++..
T Consensus        80 ~~~~~~i~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~  144 (220)
T 1xcc_A           80 DKWIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATV  144 (220)
T ss_dssp             HHHHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHHhcCCCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEE
Confidence            234333221   12356777778788999999983            479999999999999883

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.71  E-value=2.9e-17  Score=144.18  Aligned_cols=119  Identities=11%  Similarity=0.169  Sum_probs=98.6

Q ss_pred             hhhhccCCcee-cCCCceeee-ccc--CCcE-EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL-SRDHRKITV-SEL--AGKT-IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l-~~~--~~k~-vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      .+|.++|+|.+ +.+| .+++ +++  +||+ ||++||++||++|..+++.|.+++++|++   .+++|++|++|...  
T Consensus         6 ~iG~~aPdF~l~~~~G-~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~---~gv~VI~VS~Ds~~~~   81 (249)
T 3a2v_A            6 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH   81 (249)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEcCCC-CEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHh---CCcEEEEEECCCHHHH
Confidence            46899999999 7777 7999 999  9996 55688999999999999999999999986   78999999998643  


Q ss_pred             HHHHHhhhcC--CccccccCchhHHHHHHHcCCC-------ceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIM--PWLAIPYEDRARQDLCRIFNIK-------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~v~-------~~P~~~lid~~G~v~~~~  268 (358)
                      ..|.+.+...  ..+.+|+..|....+++.||+.       .+|+++|||++|+|+...
T Consensus        82 ~~w~~~~~~~~~~~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~  140 (249)
T 3a2v_A           82 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTML  140 (249)
T ss_dssp             HHHHHHHHHHTCCCCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEE
T ss_pred             HHHHHHHHHhcCCCCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEE
Confidence            3444433321  1356777778888999999997       899999999999999873

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.70  E-value=4e-17  Score=140.25  Aligned_cols=113  Identities=7%  Similarity=0.056  Sum_probs=96.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccC-CcccH-----hhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHW-CPPCR-----SFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~w-C~~C~-----~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      +|.++|+|++ +.+|+.+++++++||++||+||+.| ||+|.     .+++.|.++   |     .++.|++|+.|. ..
T Consensus        24 vG~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~-----~gv~VvgIS~Ds-~~   94 (224)
T 3keb_A           24 KGDYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W-----PHLKLIVITVDS-PS   94 (224)
T ss_dssp             TTCBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C-----TTSEEEEEESSC-HH
T ss_pred             CCCCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c-----CCCEEEEEECCC-HH
Confidence            5899999999 8899999999999999999999988 99999     888887766   3     458999999984 55


Q ss_pred             HHHHhhhcCCccccccCchh-HHHHHHHcCCCc---------eeeEEEECCCCcEEecC
Q 018266          220 EFDLNHSIMPWLAIPYEDRA-RQDLCRIFNIKG---------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~v~~---------~P~~~lid~~G~v~~~~  268 (358)
                      ...+|...+....+|+..|. ...+++.||+..         .|++||||++|+|++..
T Consensus        95 ~~~~f~~~~gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~  153 (224)
T 3keb_A           95 SLARARHEHGLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSE  153 (224)
T ss_dssp             HHHHHHHHHCCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEE
T ss_pred             HHHHHHHHcCCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEE
Confidence            66667666654468888887 589999999864         79999999999999874

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.69  E-value=8e-17  Score=137.36  Aligned_cols=120  Identities=14%  Similarity=0.173  Sum_probs=101.6

Q ss_pred             HhhhhccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--
Q 018266          145 QLLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--  217 (358)
Q Consensus       145 ~~~~~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--  217 (358)
                      ..+|.++|+|++    +.++++++|++++||+|||+|| +.||+.|..+++.|++.+++|++   .+++|++|++|..  
T Consensus        23 ~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~---~g~~vigiS~Ds~~s   99 (216)
T 3sbc_A           23 AQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEE---QGAQVLFASTDSEYS   99 (216)
T ss_dssp             CCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHH
T ss_pred             hhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhcc---CCceEEEeecCchhh
Confidence            457999999986    4456789999999999999999 89999999999999999999987   8999999999964  


Q ss_pred             HHHHHHhhhcC---CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          218 HKEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ...|.+.....   ..+.+|...|....+++.||+-      ..+.+||||++|+|++.
T Consensus       100 h~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~  158 (216)
T 3sbc_A          100 LLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHI  158 (216)
T ss_dssp             HHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEE
Confidence            34555544322   2467888889999999999983      46899999999999876

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=141.00  Aligned_cols=65  Identities=18%  Similarity=0.452  Sum_probs=54.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|+|||+||+||++++|.|+++++++.+.+..+.++.|+++.++.                  ..++++|+|.++
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~------------------~~l~~~~~v~~~   90 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN------------------SAVCRDFNIPGF   90 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT------------------HHHHHHTTCCSS
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh------------------HHHHHHcCCCcc
Confidence            46999999999999999999999999999998744458899999864433                  357888888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        91 Pt~   93 (244)
T 3q6o_A           91 PTV   93 (244)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            864

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.65  E-value=1.2e-15  Score=130.26  Aligned_cols=119  Identities=18%  Similarity=0.324  Sum_probs=100.0

Q ss_pred             hhhhccCCce----e-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--
Q 018266          146 LLAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--  217 (358)
Q Consensus       146 ~~~~~~p~f~----l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--  217 (358)
                      .+|.++|+|+    + +.+|++++|++++||+|||+|| +.||+.|..++..|.+++++|++   .+++|++|++|..  
T Consensus        27 ~vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~---~g~~vigiS~Ds~~s  103 (219)
T 3tue_A           27 KINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNE---LNCEVLACSIDSEYA  103 (219)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHT---TTEEEEEEESSCHHH
T ss_pred             ccCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhcc---CCcEEEEeeCCchhh
Confidence            4799999998    3 6678899999999999999999 89999999999999999999987   8999999999974  


Q ss_pred             HHHHHHhhh-c--CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          218 HKEFDLNHS-I--MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ...|.+... .  ...+.+|...|....+++.||+-      ....++|||++|+|+..
T Consensus       104 h~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~  162 (219)
T 3tue_A          104 HLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQI  162 (219)
T ss_dssp             HHHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHhhhhHHhcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEE
Confidence            345544322 1  22467788889999999999983      34689999999999876

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.64  E-value=1.2e-15  Score=120.05  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             CCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCc
Q 018266          158 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED  237 (358)
Q Consensus       158 ~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  237 (358)
                      .+|........++|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+.                   
T Consensus        14 ~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~d~-------------------   70 (126)
T 2l57_A           14 INVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKERE----GKFNIYYARLEEEK-------------------   70 (126)
T ss_dssp             CSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSS----SSCEEEEEETTSSH-------------------
T ss_pred             cchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhc----CCeEEEEEeCCCCc-------------------
Confidence            3333333455678999999999999999999999999999886    56889999844322                   


Q ss_pred             hhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          238 RARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       238 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                        ...++++|++.++|+++++|++|+++.+       ..|...       .++|.+.++.....-+
T Consensus        71 --~~~~~~~~~v~~~Pt~~~~~~~G~~~~~-------~~G~~~-------~~~l~~~l~~~~~~~~  120 (126)
T 2l57_A           71 --NIDLAYKYDANIVPTTVFLDKEGNKFYV-------HQGLMR-------KNNIETILNSLGVKEG  120 (126)
T ss_dssp             --HHHHHHHTTCCSSSEEEEECTTCCEEEE-------EESCCC-------HHHHHHHHHHHCCCCC
T ss_pred             --hHHHHHHcCCcceeEEEEECCCCCEEEE-------ecCCCC-------HHHHHHHHHHHhcccc
Confidence              4689999999999999999999999876       344332       4566666776655444

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.64  E-value=1.6e-15  Score=121.71  Aligned_cols=83  Identities=24%  Similarity=0.420  Sum_probs=74.7

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      +.+|....++.+++|+++|+||++||++|+.+.|.|.+++++++    .++.++.|.+|..                   
T Consensus        38 ~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-------------------   94 (141)
T 3hxs_A           38 DYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYA----GKIYIYKVNVDKE-------------------   94 (141)
T ss_dssp             CCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-------------------
T ss_pred             ccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhc----CceEEEEEECCCC-------------------
Confidence            56677888888999999999999999999999999999999987    5688888988865                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                          ..++++|+|.++|+++++|++|+++.
T Consensus        95 ----~~~~~~~~v~~~Pt~~~~~~~g~~~~  120 (141)
T 3hxs_A           95 ----PELARDFGIQSIPTIWFVPMKGEPQV  120 (141)
T ss_dssp             ----HHHHHHTTCCSSSEEEEECSSSCCEE
T ss_pred             ----HHHHHHcCCCCcCEEEEEeCCCCEEE
Confidence                57899999999999999999999873

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.63  E-value=1.7e-15  Score=115.28  Aligned_cols=71  Identities=21%  Similarity=0.489  Sum_probs=61.4

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..+|+|+|+|||+||++|+.+.|.+.++++.++     ++.++.|++|..                       ..++++|
T Consensus        18 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~~-----------------------~~l~~~~   69 (105)
T 3zzx_A           18 AGNKLVVIDFYATWCGPCKMIAPKLEELSQSMS-----DVVFLKVDVDEC-----------------------EDIAQDN   69 (105)
T ss_dssp             TTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCEEEEEEECCCCCCccCCCcchhhhhhccC-----CeEEEEEecccC-----------------------HHHHHHc
Confidence            457899999999999999999999999998875     366666776653                       6899999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|+++||++++ ++|+++.+
T Consensus        70 ~V~~~PT~~~~-~~G~~v~~   88 (105)
T 3zzx_A           70 QIACMPTFLFM-KNGQKLDS   88 (105)
T ss_dssp             TCCBSSEEEEE-ETTEEEEE
T ss_pred             CCCeecEEEEE-ECCEEEEE
Confidence            99999999999 88998876

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.62  E-value=5.7e-16  Score=123.49  Aligned_cols=95  Identities=18%  Similarity=0.346  Sum_probs=75.0

Q ss_pred             hhhccCCcee--cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHH
Q 018266          147 LAIEGRDYVL--SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       147 ~~~~~p~f~l--~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~  221 (358)
                      .+..+|+|..  +.++-...+++.+||+++|+||++||++|+.+.|.+   .++.++++     ++.++.|+++...   
T Consensus         6 ~~~~~~~f~~~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-----~~~~~~vd~~~~~---   77 (134)
T 2fwh_A            6 QTQTHLNFTQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-----DTVLLQANVTAND---   77 (134)
T ss_dssp             ----CCCCEECCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-----TSEEEEEECTTCC---
T ss_pred             ccccCCCcEEecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-----CcEEEEEeCCCCc---
Confidence            3566788873  444445567777899999999999999999999988   88888874     3888888886531   


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                                      +....++++|+|.++|+++++|++|+++
T Consensus        78 ----------------~~~~~l~~~~~v~~~Pt~~~~d~~G~~v  105 (134)
T 2fwh_A           78 ----------------AQDVALLKHLNVLGLPTILFFDGQGQEH  105 (134)
T ss_dssp             ----------------HHHHHHHHHTTCCSSSEEEEECTTSCBC
T ss_pred             ----------------chHHHHHHHcCCCCCCEEEEECCCCCEe
Confidence                            2357899999999999999999999997

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.61  E-value=2.6e-15  Score=118.61  Aligned_cols=89  Identities=19%  Similarity=0.420  Sum_probs=74.1

Q ss_pred             ccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCC
Q 018266          150 EGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP  229 (358)
Q Consensus       150 ~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~  229 (358)
                      +.|++. ..+++.++....++|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..            
T Consensus        23 ~~~~~~-~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~v~~~~vd~d~~------------   85 (128)
T 3ul3_B           23 KVPRLQ-QNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYG----KRIYLLKVDLDKN------------   85 (128)
T ss_dssp             ---CCC-CCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHG----GGEEEEEEEGGGC------------
T ss_pred             cCCccc-cCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC------------
Confidence            345554 45566677777889999999999999999999999999999997    5688888887764            


Q ss_pred             ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       230 ~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                                 ..++++|+|.++|+++++ ++|+++.+
T Consensus        86 -----------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  111 (128)
T 3ul3_B           86 -----------ESLARKFSVKSLPTIILL-KNKTMLAR  111 (128)
T ss_dssp             -----------HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----------HHHHHHcCCCCcCEEEEE-ECCEEEEE
Confidence                       588999999999999999 78998876

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=99.60  E-value=2.7e-15  Score=120.52  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=79.5

Q ss_pred             cccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHH---HHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           21 ASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        21 ~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~---~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ....++| +.+.+|+ +++++++||+++|+|||+||++|+.++|.+.+   +++++++.+  ++++.|+.|.+.+.+.++
T Consensus         8 G~~ap~f~l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~--~~vi~i~~d~~~~~~~~~   85 (142)
T 3eur_A            8 GTKALNFTYTLDSGVKGTLYQFPAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKK--LKVLSIYPDEELDEWKKH   85 (142)
T ss_dssp             TSBCCCCEEEETTSCEEETTTCCCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTS--EEEEEEECSSCHHHHHHH
T ss_pred             CCccCCcEEEcCCCCEeeHHHcCCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCC--eEEEEEEcCCCHHHHHHH
Confidence            3455666 8899999 99999999999999999999999999999999   999998766  999999999888888888


Q ss_pred             HhhCCCcc--cccccc--eeeeccccCCCCc
Q 018266           96 FKSSDGTL--IEEDLI--GLIEDYGADAYPF  122 (358)
Q Consensus        96 ~~~~~~~~--~~~~~~--~l~~~~gi~~~P~  122 (358)
                      ........  ..+...  .+.+.|++.++|+
T Consensus        86 ~~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~  116 (142)
T 3eur_A           86 RNDFAKEWTNGYDKELVIKNKNLYDLRAIPT  116 (142)
T ss_dssp             GGGSCTTSEEEECTTCHHHHTTCSCCTTCSE
T ss_pred             HHhcccccccccCccchhhhhhhcCCCcCCe
Confidence            76643322  111111  2466777777774

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=99.59  E-value=4.6e-15  Score=119.05  Aligned_cols=99  Identities=16%  Similarity=0.250  Sum_probs=78.5

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHH---HHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ---LYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~---~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      ...++| +.+.+|+ +++++++||+++|+||++||++|+.++|.+.+   +++++++.+  ++++.|++|.+.+.+.++.
T Consensus         5 ~~~p~f~l~~~~g~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~   82 (142)
T 3ewl_A            5 MKAADFTYVTVHGDNSRMSRLKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGT--LRVLAIYPDENREEWATKA   82 (142)
T ss_dssp             SBCCCCEEECTTCCEEEGGGCCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTS--EEEEEEECSSCHHHHHHHH
T ss_pred             CcCCCCEEECCCCCEEEhhhcCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCC--eEEEEEEecCCHHHHHHHH
Confidence            344566 8899999 99999999999999999999999999999998   999998766  9999999998888887776


Q ss_pred             hhCCC--cccccccceee--eccccCCCCc
Q 018266           97 KSSDG--TLIEEDLIGLI--EDYGADAYPF  122 (358)
Q Consensus        97 ~~~~~--~~~~~~~~~l~--~~~gi~~~P~  122 (358)
                      .....  .++.+....+.  +.|++.++|+
T Consensus        83 ~~~~~~~~~~~d~~~~~~~~~~~~v~~~P~  112 (142)
T 3ewl_A           83 VYMPQGWIVGWNKAGDIRTRQLYDIRATPT  112 (142)
T ss_dssp             TTSCTTCEEEECTTCHHHHTTCSCCCSSSE
T ss_pred             HHcCCCcceeeCCccchhhHHHcCCCCCCe
Confidence            65333  23333333333  3788887774

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=99.59  E-value=3.9e-15  Score=121.27  Aligned_cols=97  Identities=20%  Similarity=0.260  Sum_probs=79.5

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .++| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.+  ++++.|++|.+.+.++++......
T Consensus        15 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~i~~d~~~~~~~~~~~~~~~   92 (152)
T 2lrt_A           15 IIDIQLKDLKGNTRSLTDLKGKVVLIDFTVYNNAMSAAHNLALRELYNKYASQG--FEIYQISLDGDEHFWKTSADNLPW   92 (152)
T ss_dssp             SCCCCEEBTTSCEECTTTGGGSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECSCCHHHHHHHHTTCSS
T ss_pred             CCCeEEEcCCCCEEeHHHhCCCEEEEEEEcCCChhhHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHHhCCCc
Confidence            3555 8899999 99999999999999999999999999999999999998876  999999999888777777654333


Q ss_pred             cccccccce---eeeccccCCCCc
Q 018266          102 TLIEEDLIG---LIEDYGADAYPF  122 (358)
Q Consensus       102 ~~~~~~~~~---l~~~~gi~~~P~  122 (358)
                      .++.+....   +.+.|++.++|+
T Consensus        93 ~~~~d~~~~~~~~~~~~~v~~~P~  116 (152)
T 2lrt_A           93 VCVRDANGAYSSYISLYNVTNLPS  116 (152)
T ss_dssp             EEEECSSGGGCHHHHHHTCCSCSE
T ss_pred             eEEECCCCcchHHHHHcCcccCce
Confidence            444433333   778888888874

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.58  E-value=7.3e-15  Score=134.15  Aligned_cols=110  Identities=17%  Similarity=0.128  Sum_probs=90.8

Q ss_pred             hccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          149 IEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       149 ~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      .++|+|++ +.+|+++++++++||+|+|+|| +.|||.|..+++.|.+    .   ..++++|++|+.|. .+...+|..
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~----~---~~~~~~v~gis~D~-~~~~~~f~~   73 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR----E---NFEKAQVVGISRDS-VEALKRFKE   73 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH----S---CCTTEEEEEEESCC-HHHHHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH----H---hhCCCEEEEEeCCC-HHHHHHHHH
Confidence            36899999 9999999999999999999999 5789999999887753    1   22679999999984 445555555


Q ss_pred             cCCccccccCchhHHHHHHHcCC----CceeeEEEECCCCcEEec
Q 018266          227 IMPWLAIPYEDRARQDLCRIFNI----KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~v----~~~P~~~lid~~G~v~~~  267 (358)
                      .++ +.+|...|....+++.|||    ..+|++|+||++|+|++.
T Consensus        74 ~~~-l~fp~l~D~~~~v~~~ygv~~~~~~~r~tfiId~~G~i~~~  117 (322)
T 4eo3_A           74 KND-LKVTLLSDPEGILHEFFNVLENGKTVRSTFLIDRWGFVRKE  117 (322)
T ss_dssp             HHT-CCSEEEECTTCHHHHHTTCEETTEECCEEEEECTTSBEEEE
T ss_pred             hhC-CceEEEEcCchHHHHhcCCCCCCcCccEEEEECCCCEEEEE
Confidence            544 5778888888999999999    358999999999999865

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.55  E-value=2.4e-14  Score=125.75  Aligned_cols=93  Identities=15%  Similarity=0.251  Sum_probs=73.0

Q ss_pred             cCccc-ccCC-CC---ceeccc-CCCCEEEEEEe-CCCChhhh-hhhHHHHHHHHHHhcCCCce-EEEEEEecCChhHHH
Q 018266           23 EGVEF-LLSR-QG---KVPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFE   93 (358)
Q Consensus        23 ~~~~~-l~~~-~g---~v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~~~~~~~~l~~~~~~~-~iv~i~~d~~~~~~~   93 (358)
                      ..++| +.+. +|   .+++++ ++||+++|.|| ++||++|+ ..+|.|.++++++++.|  + +++.|+.|. .....
T Consensus         8 ~aP~f~l~~~~~g~~~~v~l~~~~~gk~vvl~f~~a~~cp~C~~~e~~~l~~~~~~~~~~~--~~~vv~is~d~-~~~~~   84 (241)
T 1nm3_A            8 KVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYG--VDDILVVSVND-TFVMN   84 (241)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-HHHHH
T ss_pred             CCCCeEEEcccCCCceeecHHHHhCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEEcCC-HHHHH
Confidence            34455 6664 66   499999 89999999999 99999999 99999999999998877  8 899999985 44555


Q ss_pred             HHHhhCC---CcccccccceeeeccccC
Q 018266           94 EHFKSSD---GTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        94 ~~~~~~~---~~~~~~~~~~l~~~~gi~  118 (358)
                      ++.....   ..++.+....+++.||+.
T Consensus        85 ~~~~~~~~~~~~~l~D~~~~~~~~~gv~  112 (241)
T 1nm3_A           85 AWKEDEKSENISFIPDGNGEFTEGMGML  112 (241)
T ss_dssp             HHHHHTTCTTSEEEECTTSHHHHHTTCE
T ss_pred             HHHHhcCCCceEEEECCCcHHHHHhCce
Confidence            5555422   345666666788888875

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=99.55  E-value=4.3e-15  Score=117.52  Aligned_cols=90  Identities=13%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             CCcEEEEEEeccC--CcccHhhHHHHHHHHHHhhcccCCc-eEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          169 AGKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHC-FEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       169 ~~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~-~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .+++|||+||++|  |++|+.+.|.|.+++++|.    .+ +.|+-|++|.                       +..++.
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~----g~~v~~~KVdvDe-----------------------~~~lA~   85 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFP----DYTWQVAIADLEQ-----------------------SEAIGD   85 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCT----TSCCEEEECCHHH-----------------------HHHHHH
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcC----CCeEEEEEEECCC-----------------------CHHHHH
Confidence            4578999999999  9999999999999999997    45 7777776664                       579999


Q ss_pred             HcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          246 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      +|+|+++||+++| ++|+++.+       ..|...       .++|.+.+++.+.
T Consensus        86 ~ygV~sIPTlilF-k~G~~v~~-------~~G~~~-------k~~l~~~i~~~l~  125 (140)
T 2qgv_A           86 RFGAFRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVE  125 (140)
T ss_dssp             HHTCCSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHHHC
T ss_pred             HcCCccCCEEEEE-ECCEEEEE-------EecCCC-------HHHHHHHHHHHhc
Confidence            9999999999999 89998877       566554       4456666666554

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=99.55  E-value=8.2e-15  Score=117.95  Aligned_cols=94  Identities=28%  Similarity=0.611  Sum_probs=76.4

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhc-CCCceEEEEEEecCChhHHHHHHhhCCC---c
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKSSDG---T  102 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~-~~~~~~iv~i~~d~~~~~~~~~~~~~~~---~  102 (358)
                      +.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++++ .+  ++++.|++|.+.+.+.++..+...   .
T Consensus        13 l~~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~~~~~   90 (144)
T 1i5g_A           13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEKKN--FEVMLISWDESAEDFKDYYAKMPWLALP   90 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTTT--EEEEEEECCSSHHHHHHHHTTCSSEECC
T ss_pred             EEcCCCCEecHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCCC--EEEEEEeCCCCHHHHHHHHHhCCccccc
Confidence            8889999 999999999999999999999999999999999999985 33  999999999888888887666432   1


Q ss_pred             ccc-cccceeeeccccCCCCcc
Q 018266          103 LIE-EDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       103 ~~~-~~~~~l~~~~gi~~~P~~  123 (358)
                      +.. +....+++.|++.++|+.
T Consensus        91 ~~~~d~~~~~~~~~~v~~~P~~  112 (144)
T 1i5g_A           91 FEDRKGMEFLTTGFDVKSIPTL  112 (144)
T ss_dssp             TTCHHHHHHHHHHTTCCSSSEE
T ss_pred             cCchHHHHHHHHHcCCCCCCEE
Confidence            111 223467778888888853

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=99.55  E-value=1.3e-14  Score=117.96  Aligned_cols=97  Identities=20%  Similarity=0.393  Sum_probs=77.4

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .++| +.+.+|+ +++++++||+++|.||++||++|+.++|.|.++++++.+.+  ++++.|++|.+.+.+.++......
T Consensus         9 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~~   86 (152)
T 2lrn_A            9 APAITGIDLKGNSVSLNDFKGKYVLVDFWFAGCSWCRKETPYLLKTYNAFKDKG--FTIYGVSTDRREEDWKKAIEEDKS   86 (152)
T ss_dssp             CCCCEEECSSSCEEESGGGTTSEEEEEEECTTCTTHHHHHHHHHHHHHHHTTTT--EEEEEEECCSCHHHHHHHHHHHTC
T ss_pred             CCCceeEcCCCCEEeHHHcCCCEEEEEEECCCChhHHHHHHHHHHHHHHhccCC--eEEEEEEccCCHHHHHHHHHHhCC
Confidence            3455 8889999 99999999999999999999999999999999999998766  999999999887777777655222


Q ss_pred             --cccccc---cceeeeccccCCCCc
Q 018266          102 --TLIEED---LIGLIEDYGADAYPF  122 (358)
Q Consensus       102 --~~~~~~---~~~l~~~~gi~~~P~  122 (358)
                        .++.+.   ...+++.|++.++|+
T Consensus        87 ~~~~~~d~~~~~~~~~~~~~v~~~P~  112 (152)
T 2lrn_A           87 YWNQVLLQKDDVKDVLESYCIVGFPH  112 (152)
T ss_dssp             CSEEEEECHHHHHHHHHHTTCCSSCE
T ss_pred             CCeEEecccchhHHHHHHhCCCcCCe
Confidence              233333   345666777776664

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.55  E-value=3.6e-14  Score=113.21  Aligned_cols=93  Identities=27%  Similarity=0.419  Sum_probs=75.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        37 ~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   89 (136)
T 2l5l_A           37 GDKPAIVDFYADWCGPCKMVAPILDELAKEYD----GQIVIYKVDTEKE-----------------------QELAGAFG   89 (136)
T ss_dssp             CSSCEEEEEECTTSHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCEEEEEEeCCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999987    4588888888864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      |.++|+++++|++|+++..        .|...       .++|.+.+++.....+
T Consensus        90 v~~~Pt~~~~~~~G~~~~~--------~G~~~-------~~~l~~~l~~~~~~~~  129 (136)
T 2l5l_A           90 IRSIPSILFIPMEGKPEMA--------QGAMP-------KASFKKAIDEFLLKKE  129 (136)
T ss_dssp             CCSSCEEEEECSSSCCEEE--------ESCCC-------HHHHHHHHHHHHTSCT
T ss_pred             CCCCCEEEEECCCCcEEEE--------eCCCC-------HHHHHHHHHHHhhccC
Confidence            9999999999999998733        33322       4566666776665444

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.55  E-value=9.9e-15  Score=115.00  Aligned_cols=69  Identities=19%  Similarity=0.325  Sum_probs=62.8

Q ss_pred             cEEEEEEeccCC--cccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          171 KTIGLYFGAHWC--PPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       171 k~vlv~F~a~wC--~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++|||+|||+||  ++|+.+.|.|.++.++|.    .++.|+-|++|.                       +..++.+|+
T Consensus        34 ~~vlVdF~A~wCr~gpCk~iaPvleela~e~~----~~v~~~KVdvDe-----------------------~~~la~~yg   86 (137)
T 2qsi_A           34 KIVVLFFRGDAVRFPEAADLAVVLPELINAFP----GRLVAAEVAAEA-----------------------ERGLMARFG   86 (137)
T ss_dssp             SEEEEEECCCTTTCTTHHHHHHHHHHHHHTST----TTEEEEEECGGG-----------------------HHHHHHHHT
T ss_pred             CcEEEEEeCCccCCCchhhHHhHHHHHHHHcc----CCcEEEEEECCC-----------------------CHHHHHHcC
Confidence            499999999999  999999999999999996    678888887775                       479999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||+++| ++|+++.+
T Consensus        87 V~siPTlilF-kdG~~v~~  104 (137)
T 2qsi_A           87 VAVCPSLAVV-QPERTLGV  104 (137)
T ss_dssp             CCSSSEEEEE-ECCEEEEE
T ss_pred             CccCCEEEEE-ECCEEEEE
Confidence            9999999999 89998887

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=99.55  E-value=7.3e-15  Score=118.15  Aligned_cols=96  Identities=18%  Similarity=0.134  Sum_probs=71.5

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .++| + +.+|+ +++++++||+++|+|||+||++|+.++|.|.++++++++.+  ++++.|++|.+.+.++++......
T Consensus        13 ~P~f~l-~~~g~~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~~~~   89 (143)
T 4fo5_A           13 APRIEF-LGNDAKASFHNQLGRYTLLNFWAAYDAESRARNVQLANEVNKFGPDK--IAMCSISMDEKESIFTETVKIDKL   89 (143)
T ss_dssp             CCCCCC------CCCSCCSSCCEEEEEEECTTCHHHHHHHHHHHHHHTTSCTTT--EEEEEEECCSCHHHHHHHHHHHTC
T ss_pred             CCceEE-cCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCcCC--EEEEEEEccCCHHHHHHHHHHhCC
Confidence            3456 5 88999 99999999999999999999999999999999999998766  999999999888777777666333


Q ss_pred             cc---cccc---cceeeeccccCCCCc
Q 018266          102 TL---IEED---LIGLIEDYGADAYPF  122 (358)
Q Consensus       102 ~~---~~~~---~~~l~~~~gi~~~P~  122 (358)
                      ..   +.+.   ...+.+.|++.++|+
T Consensus        90 ~~~~~~~d~~~~~~~~~~~~~v~~~P~  116 (143)
T 4fo5_A           90 DLSTQFHEGLGKESELYKKYDLRKGFK  116 (143)
T ss_dssp             CGGGEEECTTGGGSHHHHHTTGGGCCC
T ss_pred             CCceeeecccccchHHHHHcCCCCCCc
Confidence            22   2221   134667777777664

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.55  E-value=7.1e-15  Score=117.73  Aligned_cols=69  Identities=16%  Similarity=0.358  Sum_probs=61.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|||+|||+||+||+.+.|.|.++++++.    +.+.|+-|++|..                       .+++.+|+
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~----~~v~f~kVDVDe~-----------------------~e~a~~y~   92 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIK----NFCVIYLVDITEV-----------------------PDFNTMYE   92 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTTTT
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHcc----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999996    5578888888864                       57899999


Q ss_pred             CCceeeEEEECCCCcEE
Q 018266          249 IKGIPALVLIGPDGKTI  265 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~  265 (358)
                      |.++||+++| .+|+.+
T Consensus        93 V~siPT~~fF-k~G~~v  108 (160)
T 2av4_A           93 LYDPVSVMFF-YRNKHM  108 (160)
T ss_dssp             CCSSEEEEEE-ETTEEE
T ss_pred             CCCCCEEEEE-ECCEEE
Confidence            9999999999 788776

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.54  E-value=2.2e-14  Score=116.10  Aligned_cols=103  Identities=27%  Similarity=0.415  Sum_probs=80.0

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+......+|+++|+||++||++|+.+.|.|.++++++.    .++.++.|++|..                   
T Consensus        42 ~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~-------------------   98 (148)
T 3p2a_A           42 NATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERA----GKVRFVKVNTEAE-------------------   98 (148)
T ss_dssp             ECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-------------------
T ss_pred             ecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcC----CceEEEEEECcCC-------------------
Confidence            55666555444568999999999999999999999999999987    5588888888864                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCC
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDA  301 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~  301 (358)
                          ..++++|+|.++|+++++ ++|+++.+       ..|...       .++|.+.+++.+..
T Consensus        99 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~-------~~G~~~-------~~~l~~~l~~~l~~  144 (148)
T 3p2a_A           99 ----PALSTRFRIRSIPTIMLY-RNGKMIDM-------LNGAVP-------KAPFDNWLDEQLSR  144 (148)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE-------ESSCCC-------HHHHHHHHHHHHHS
T ss_pred             ----HHHHHHCCCCccCEEEEE-ECCeEEEE-------EeCCCC-------HHHHHHHHHHHhcc
Confidence                578999999999999999 78988876       344332       44555556555443

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.54  E-value=5.1e-15  Score=120.88  Aligned_cols=92  Identities=24%  Similarity=0.439  Sum_probs=71.8

Q ss_pred             CceeeecccCCcEEEEEEe-ccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          160 HRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      ++.+.++..+||+++|+|| ++||++|+.+.|.|   .++.+.+.    .++.++.|+++...        ..   ..+ 
T Consensus        37 ~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~----~~~~~v~vd~~~~~--------~~---~~~-  100 (154)
T 2ju5_A           37 AEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAG----VHLHMVEVDFPQKN--------HQ---PEE-  100 (154)
T ss_dssp             HHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEECCSSC--------CC---CHH-
T ss_pred             HHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhc----CcEEEEEecCcccc--------CC---Chh-
Confidence            5566777778999999999 99999999999999   67755553    45778888776542        00   111 


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ..+....+++.|+|.++|+++++|++|+++.+
T Consensus       101 ~~~~~~~l~~~~~v~~~Pt~~~~d~~G~~~~~  132 (154)
T 2ju5_A          101 QRQKNQELKAQYKVTGFPELVFIDAEGKQLAR  132 (154)
T ss_dssp             HHHHHHHHHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred             hHhhHHHHHHHcCCCCCCEEEEEcCCCCEEEE
Confidence            12346789999999999999999999999987

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.54  E-value=9.5e-15  Score=135.54  Aligned_cols=163  Identities=11%  Similarity=0.111  Sum_probs=107.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHH-------HHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeee
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQ-------LVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIE  113 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~-------~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~  113 (358)
                      ++++|+|+||||||+ |+.++|.       |+++++.+++.+  +.++.|+++.+.                    .+|+
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~--v~~~~Vd~~~~~--------------------~l~~   83 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEHKD--IGFVMVDAKKEA--------------------KLAK   83 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGGSS--EEEEEEETTTTH--------------------HHHH
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhhcC--cEEEEEeCCCCH--------------------HHHH
Confidence            479999999999999 9999999       899999987654  778777777654                    5788


Q ss_pred             ccccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCC-ceee-ecccCCcEEEEEEeccCCcccHhhHHH
Q 018266          114 DYGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQ  191 (358)
Q Consensus       114 ~~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g-~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~~~  191 (358)
                      +|+|.+||+...........+.+.+....+..++....++....++. +.+. +-....+.++|.|+++||.   ...+.
T Consensus        84 ~~~v~~~Pt~~~~~~g~~~~~~G~~~~~~l~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~  160 (350)
T 1sji_A           84 KLGFDEEGSLYVLKGDRTIEFDGEFAADVLVEFLLDLIEDPVEIINSKLEVQAFERIEDQIKLIGFFKSEES---EYYKA  160 (350)
T ss_dssp             HHTCCSTTEEEEEETTEEEEECSCCCHHHHHHHHHTTSSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTS---HHHHH
T ss_pred             hcCCCccceEEEEECCcEEEecCCCCHHHHHHHHHHhcCCcceeccchHHHHHHhccCCCcEEEEEECCCCc---HHHHH
Confidence            89999999754322111122334444455555555443332222221 1111 1011345678889888764   45677


Q ss_pred             HHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECC
Q 018266          192 LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP  260 (358)
Q Consensus       192 l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~  260 (358)
                      +.+++..++    .++.+..+  .                        +..++++|++. .|+++++.+
T Consensus       161 ~~~~A~~~~----~~~~f~~~--~------------------------~~~~~~~~~v~-~p~i~~~~~  198 (350)
T 1sji_A          161 FEEAAEHFQ----PYIKFFAT--F------------------------DKGVAKKLSLK-MNEVDFYEP  198 (350)
T ss_dssp             HHHHHHHTT----TTSEEEEE--C------------------------CHHHHHHHTCC-TTCEEEECT
T ss_pred             HHHHHHhhc----cCcEEEEE--C------------------------CHHHHHHcCCC-CCcEEEEeC
Confidence            888888886    45555444  2                        25688899999 999999965

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.54  E-value=9.8e-15  Score=141.50  Aligned_cols=66  Identities=17%  Similarity=0.437  Sum_probs=54.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||++|++++|.|+++++++++.+..+.++.|+++.++.                  .+++++|+|.++
T Consensus        29 ~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~------------------~~l~~~~~V~~~   90 (519)
T 3t58_A           29 SSSAWAVEFFASWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEETN------------------SAVCREFNIAGF   90 (519)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGGG------------------HHHHHHTTCCSB
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCcccc------------------HHHHHHcCCccc
Confidence            36999999999999999999999999999998744458898898875433                  367888888888


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        91 PTl~   94 (519)
T 3t58_A           91 PTVR   94 (519)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            8643

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.53  E-value=3.6e-14  Score=108.13  Aligned_cols=83  Identities=16%  Similarity=0.317  Sum_probs=69.5

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+......+++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                   
T Consensus         8 ~l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-------------------   64 (109)
T 3tco_A            8 VLTEENFDEVIRNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYK----GKAVFGRLNVDEN-------------------   64 (109)
T ss_dssp             ECCTTTHHHHHHHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-------------------
T ss_pred             EecHHHHHHHHhcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhC----CCceEEEEccccC-------------------
Confidence            44445444333358999999999999999999999999999987    4688888888764                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                          ..++++|++.++|+++++ ++|+++.+
T Consensus        65 ----~~~~~~~~i~~~Pt~~~~-~~g~~~~~   90 (109)
T 3tco_A           65 ----QKIADKYSVLNIPTTLIF-VNGQLVDS   90 (109)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----HHHHHhcCcccCCEEEEE-cCCcEEEe
Confidence                578999999999999999 99998876

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.53  E-value=2.8e-14  Score=113.28  Aligned_cols=77  Identities=31%  Similarity=0.539  Sum_probs=66.0

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHH--HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLI--EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~--~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ..+|+++|+||++||++|+.+.|.|.  ++.++++    .++.++.|+++..                    +....+++
T Consensus        27 ~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~----~~~~~~~vd~~~~--------------------~~~~~l~~   82 (133)
T 3fk8_A           27 RTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIA----KHFEVVKIDVGNF--------------------DRNLELSQ   82 (133)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHH----HHCEEEEEECTTT--------------------TSSHHHHH
T ss_pred             hcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhc----CCEEEEEEeCCcc--------------------cchHHHHH
Confidence            45899999999999999999999999  9988886    4688888988421                    11468999


Q ss_pred             HcCC---CceeeEEEECCCCcEEecC
Q 018266          246 IFNI---KGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       246 ~~~v---~~~P~~~lid~~G~v~~~~  268 (358)
                      +|+|   .++|+++++|++|+++.+.
T Consensus        83 ~~~v~~~~~~Pt~~~~d~~G~~~~~~  108 (133)
T 3fk8_A           83 AYGDPIQDGIPAVVVVNSDGKVRYTT  108 (133)
T ss_dssp             HTTCGGGGCSSEEEEECTTSCEEEEC
T ss_pred             HhCCccCCccceEEEECCCCCEEEEe
Confidence            9999   9999999999999999874

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=99.53  E-value=1.3e-14  Score=118.80  Aligned_cols=103  Identities=11%  Similarity=0.112  Sum_probs=77.3

Q ss_pred             ecccccCccc-ccC-CCCc-eecccCCCCEEEEEEeCCCChhhhh-hhHHHHHHHHHHhcCCCceEEEEEEec------C
Q 018266           18 TVLASEGVEF-LLS-RQGK-VPLSSCGGKTICLFFSANWCRPCKT-FTPQLVQLYDTLRTRGTELEVIFISFD------H   87 (358)
Q Consensus        18 ~~l~~~~~~~-l~~-~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~-~~p~~~~~~~~l~~~~~~~~iv~i~~d------~   87 (358)
                      ++...+.+++ +.+ .+|+ +++++++||+|+|.||++||++|+. ++|.|.++++++++.+  +.++.|++|      .
T Consensus         3 ~~~g~~~p~~~~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~e~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~   80 (160)
T 3lor_A            3 SLDNAPLLELDVQEWVNHEGLSNEDLRGKVVVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQ--VQVIGLHSVFEHHDVM   80 (160)
T ss_dssp             -CTTCCBCCCCEEEESSSCCCCHHHHTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGS
T ss_pred             ccCCCcCCCcccccccCCCccCHHHhCCCEEEEEEEcCCCcchhhhhhHHHHHHHHHhCcCC--cEEEEEeccccccccC
Confidence            3334455566 666 7899 9999999999999999999999999 5999999999998776  999999984      4


Q ss_pred             ChhHHHHHHhhCCC--cccccccce------eeeccccCCCCc
Q 018266           88 DENGFEEHFKSSDG--TLIEEDLIG------LIEDYGADAYPF  122 (358)
Q Consensus        88 ~~~~~~~~~~~~~~--~~~~~~~~~------l~~~~gi~~~P~  122 (358)
                      +.+..+++......  .++.+....      +.+.|++.++|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~v~~~P~  123 (160)
T 3lor_A           81 TPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYRLEGTPS  123 (160)
T ss_dssp             CHHHHHHHHHHTTCCSCEEEECCCTTCSSCHHHHHTTCCSSSE
T ss_pred             CHHHHHHHHHHcCCCCcEEECCccccchhhhHHHhcccCccce
Confidence            56666777665322  233333333      677777777774

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=99.53  E-value=3.5e-14  Score=115.13  Aligned_cols=96  Identities=24%  Similarity=0.519  Sum_probs=77.4

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-  101 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-  101 (358)
                      ++| +.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++.+.+  +.++.|++|.+.+...++...... 
T Consensus         7 p~~~l~~~~g~~~~l~~~~gk~vlv~F~~~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~v~~d~~~~~~~~~~~~~~~~   84 (151)
T 2f9s_A            7 PNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYGVN   84 (151)
T ss_dssp             CCCEEECTTCCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHHHTCC
T ss_pred             CcceeEcCCCCEEEHHHcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHHHcCCC
Confidence            455 8889999 99999999999999999999999999999999999998765  999999999887777776655222 


Q ss_pred             -cccccccceeeeccccCCCCc
Q 018266          102 -TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 -~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       .++.+....+++.|++.++|+
T Consensus        85 ~~~~~d~~~~~~~~~~v~~~P~  106 (151)
T 2f9s_A           85 FPVVLDTDRQVLDAYDVSPLPT  106 (151)
T ss_dssp             SCEEEETTSHHHHHTTCCSSCE
T ss_pred             ceEEECCchHHHHhcCCCCCCe
Confidence             333444456667777777764

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.53  E-value=3.1e-14  Score=109.53  Aligned_cols=71  Identities=24%  Similarity=0.504  Sum_probs=64.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   68 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMG----DKLKIVKIDVDEN-----------------------QETAGKYG   68 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------CSHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence            78999999999999999999999999999987    4688999988864                       46889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~G~~~~~   86 (112)
T 2voc_A           69 VMSIPTLLVL-KDGEVVET   86 (112)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999999 99999876

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.53  E-value=1.7e-14  Score=119.21  Aligned_cols=117  Identities=13%  Similarity=0.129  Sum_probs=94.1

Q ss_pred             hhhccCCcee-cCCC----------ceeeeccc-CCcE-EEEEEeccCCcccHh-hHHHHHHHHHHhhcccCCce-EEEE
Q 018266          147 LAIEGRDYVL-SRDH----------RKITVSEL-AGKT-IGLYFGAHWCPPCRS-FTSQLIEVYNELKTTANHCF-EVVL  211 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g----------~~~~l~~~-~~k~-vlv~F~a~wC~~C~~-~~~~l~~l~~~~~~~~~~~~-~vv~  211 (358)
                      +|++.|+.++ ..++          +.++++++ +||+ ||++||+.|||.|.. +++.|.+.+++|++   .++ +|++
T Consensus        12 ~~~~~p~~~~~~~~~~~~~~~~~~~~~vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~---~g~d~Vig   88 (176)
T 4f82_A           12 VGDALPDAQLFEFIDDAREGCTLGPNACSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRA---AGIDEIWC   88 (176)
T ss_dssp             TTCBCCCCEEEEEECSCCTTCCSEEEEEEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred             cCCcCCceEEEEecccccccccCCceEEeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHh---CCCCEEEE
Confidence            4788999877 2222          67889997 9985 566778999999999 99999999999987   888 9999


Q ss_pred             EeCCCCHHHHHHhhhcCCcc-ccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecC
Q 018266          212 VSTDRDHKEFDLNHSIMPWL-AIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       212 v~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~  268 (358)
                      |++|. .....+|....+.. .+|+..|.+..+++.||+.           ..|+++|| ++|+|++..
T Consensus        89 IS~D~-~~~~~~f~~~~~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~  155 (176)
T 4f82_A           89 VSVND-AFVMGAWGRDLHTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLA  155 (176)
T ss_dssp             EESSC-HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEE
T ss_pred             EeCCC-HHHHHHHHHHhCCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEE
Confidence            99995 55566666655432 4888888889999999983           24889999 999999874

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=99.52  E-value=2.2e-14  Score=115.61  Aligned_cols=97  Identities=19%  Similarity=0.301  Sum_probs=78.5

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC-
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD-  100 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~-  100 (358)
                      .++| +.+.+|+ +++++++||+++|+||++||++|+.++|.+.++++++.+.+  +.++.|++|.+.+.+.++..... 
T Consensus        11 ~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~   88 (148)
T 3hcz_A           11 APNLYMTDTTGTYRYLYDVQAKYTILFFWDSQCGHCQQETPKLYDWWLKNRAKG--IQVYAANIERKDEEWLKFIRSKKI   88 (148)
T ss_dssp             CCCCCCBCTTSCBCCGGGCCCSEEEEEEECGGGCTTCSHHHHHHHHHHHHGGGT--EEEEEEECCSSSHHHHHHHHHHTC
T ss_pred             CCceEEecCCCCEEEhHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--EEEEEEEecCCHHHHHHHHHHcCC
Confidence            3455 8889999 99999999999999999999999999999999999998876  99999999987777777766632 


Q ss_pred             --Ccccccccce--eeeccccCCCCc
Q 018266          101 --GTLIEEDLIG--LIEDYGADAYPF  122 (358)
Q Consensus       101 --~~~~~~~~~~--l~~~~gi~~~P~  122 (358)
                        ..++.+....  +++.|++.++|+
T Consensus        89 ~~~~~~~d~~~~~~~~~~~~i~~~P~  114 (148)
T 3hcz_A           89 GGWLNVRDSKNHTDFKITYDIYATPV  114 (148)
T ss_dssp             TTSEEEECTTCCCCHHHHHCCCSSCE
T ss_pred             CCceEEeccccchhHHHhcCcCCCCE
Confidence              3333333333  677778777774

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.52  E-value=3.5e-14  Score=110.08  Aligned_cols=71  Identities=18%  Similarity=0.404  Sum_probs=63.0

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++|+++|+||++||++|+.+.|.|.+++++++    + +.++.|++|..                       ..++++|
T Consensus        29 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~-v~~~~vd~d~~-----------------------~~l~~~~   80 (116)
T 3qfa_C           29 AGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYS----N-VIFLEVDVDDC-----------------------QDVASEC   80 (116)
T ss_dssp             HTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCT----T-SEEEEEETTTT-----------------------HHHHHHT
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CEEEEEECCCC-----------------------HHHHHHc
Confidence            368999999999999999999999999988875    3 88888888764                       6899999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|.++|+++++ ++|+++.+
T Consensus        81 ~v~~~Pt~~~~-~~G~~~~~   99 (116)
T 3qfa_C           81 EVKSMPTFQFF-KKGQKVGE   99 (116)
T ss_dssp             TCCSSSEEEEE-SSSSEEEE
T ss_pred             CCccccEEEEE-eCCeEEEE
Confidence            99999999999 88998876

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=99.52  E-value=2.4e-14  Score=133.67  Aligned_cols=164  Identities=10%  Similarity=0.029  Sum_probs=104.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhh------HHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           41 GGKTICLFFSANWCRPCKTFT------PQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~------p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      ++++|+|+||||||+||+...      |.++++++.++..+  +.++.|+++...                    .+|++
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~~~--v~~~~Vd~~~~~--------------------~l~~~   86 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKDA--------------------AVAKK   86 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTTTT--EEEEEEETTTTH--------------------HHHHH
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhcCC--ceEEEEeCcccH--------------------HHHHH
Confidence            369999999999999973322      68999999987544  777777777554                    57899


Q ss_pred             cccCCCCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCC-ceee-ecccCCcEEEEEEeccCCcccHhhHHHH
Q 018266          115 YGADAYPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQL  192 (358)
Q Consensus       115 ~gi~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g-~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~~~l  192 (358)
                      |+|.+||+...........+.+.+....+..++.....+-...++. +.+. +-....++++|.|+++||.   ...+.+
T Consensus        87 ~~V~~~PTl~~f~~G~~~~y~G~~~~~~i~~~i~~~~~~~v~~i~~~~~~~~~~~~~~~~~vv~ff~~~~~---~~~~~f  163 (367)
T 3us3_A           87 LGLTEEDSIYVFKEDEVIEYDGEFSADTLVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKNKDS---EHYKAF  163 (367)
T ss_dssp             HTCCSTTEEEEEETTEEEECCSCCSHHHHHHHHHHHHSCSEEECCSHHHHHHHHHCCSSCEEEEECSCTTC---HHHHHH
T ss_pred             cCCCcCceEEEEECCcEEEeCCCCCHHHHHHHHHHhcCCCcEEcCCHHHHHHHhccCCCcEEEEEECCCCc---hHHHHH
Confidence            9999999754332211122334445555555554443322222221 1111 1111247788899998865   556678


Q ss_pred             HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECC
Q 018266          193 IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGP  260 (358)
Q Consensus       193 ~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~  260 (358)
                      .+++..++    .++.+..+  .                        ...++++|++.. |+++++.+
T Consensus       164 ~~~A~~~~----~~~~F~~~--~------------------------~~~~~~~~~v~~-p~i~lf~~  200 (367)
T 3us3_A          164 KEAAEEFH----PYIPFFAT--F------------------------DSKVAKKLTLKL-NEIDFYEA  200 (367)
T ss_dssp             HHHHHHHT----TTSCEEEE--C------------------------CHHHHHHHTCCT-TCEEEECT
T ss_pred             HHHHHhhc----CCcEEEEE--C------------------------CHHHHHHcCCCC-CeEEEEcC
Confidence            88888886    44555443  2                        146788899885 99998855

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.6e-14  Score=130.79  Aligned_cols=145  Identities=16%  Similarity=0.217  Sum_probs=96.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++|+|+|||+||++|+.++|.|+++++++.+.   +.++.|++|.++.                  ..++++|+|.++
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~~~---~~~~~v~~d~~~~------------------~~l~~~~~I~~~   92 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLDGV---VQVAAVNCDLNKN------------------KALCAKYDVNGF   92 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTSTTT------------------HHHHHHTTCCBS
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHccCC---cEEEEEEccCccC------------------HHHHHhCCCCcc
Confidence            4799999999999999999999999999999764   7899999986443                  368899999999


Q ss_pred             CcchHhHHH------------------HHhhhhhhhccchhhHhhhhccCCceecCCC-ceee-ecccCCcEEEEEEecc
Q 018266          121 PFTRKRREE------------------LKAIDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKIT-VSELAGKTIGLYFGAH  180 (358)
Q Consensus       121 P~~~~~~~~------------------~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g-~~~~-l~~~~~k~vlv~F~a~  180 (358)
                      |+.......                  ....+.+.+....+..++....++....+.. +.+. +-.-..+++++.|...
T Consensus        93 Pt~~~~~~g~~v~~~~g~~~~~~~~~~~~~~y~G~r~~~~i~~fl~~~~~~~v~~i~~~~~l~~~l~~~~~~~vi~fs~~  172 (298)
T 3ed3_A           93 PTLMVFRPPKIDLSKPIDNAKKSFSAHANEVYSGARTLAPIVDFSLSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQ  172 (298)
T ss_dssp             SEEEEEECCCC-------------CCCEEEECCSCCSHHHHHHHHHTTCCCCEEECSCGGGHHHHHTSCSSEEEEEEESS
T ss_pred             ceEEEEECCceeecccccccccccccccceeecCCcCHHHHHHHHHHhcccccEEcCCHHHHHHHHhcCCceEEEEEcCC
Confidence            974322111                  0123344555666777776666555443322 1111 1111246777777322


Q ss_pred             CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          181 WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       181 wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                           ....+.+.+++..+.    +.+.+..+..+
T Consensus       173 -----~~~~~~f~~~A~~~~----~~~~F~~v~~~  198 (298)
T 3ed3_A          173 -----DKISPVYKSIALDWL----GKFDFYSISNK  198 (298)
T ss_dssp             -----SSCCHHHHHHHHHTB----TTEEEEEEEGG
T ss_pred             -----CcchHHHHHHHHHhh----cCcEEEEEcch
Confidence                 234567888888887    56777777643

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=99.51  E-value=2.7e-14  Score=115.01  Aligned_cols=96  Identities=21%  Similarity=0.332  Sum_probs=79.1

Q ss_pred             ccc-ccCCCCc-eecc--cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHH-hcCCCceEEEEEEecCChhHHHHHHhhC
Q 018266           25 VEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKSS   99 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~--~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l-~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (358)
                      +++ +.+.+|+ ++++  +++||+++|.||++||++|+.++|.+.++++++ .+.+  +.++.|++|.+.+.+.++....
T Consensus        12 p~~~l~~~~g~~~~l~~~~~~gk~vll~F~~~~C~~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~   89 (148)
T 3fkf_A           12 PYFSLPNEKGEKLSRSAERFRNRYLLLNFWASWCDPQPEANAELKRLNKEYKKNKN--FAMLGISLDIDREAWETAIKKD   89 (148)
T ss_dssp             CCCCEEBTTSCEECTTSTTTTTSEEEEEEECGGGCCCHHHHHHHHHHHHHTTTCTT--EEEEEEECCSCHHHHHHHHHHT
T ss_pred             CCeEeeCCCCCEEeccccccCCcEEEEEEECCCCHHHHHHhHHHHHHHHHhcCCCC--eEEEEEECCCCHHHHHHHHHHc
Confidence            455 8889999 9999  999999999999999999999999999999999 6665  9999999998888888887663


Q ss_pred             CC--cccccc---cceeeeccccCCCCc
Q 018266          100 DG--TLIEED---LIGLIEDYGADAYPF  122 (358)
Q Consensus       100 ~~--~~~~~~---~~~l~~~~gi~~~P~  122 (358)
                      ..  .++.+.   ...+++.|++.++|+
T Consensus        90 ~~~~~~~~d~~~~~~~~~~~~~v~~~P~  117 (148)
T 3fkf_A           90 TLSWDQVCDFTGLSSETAKQYAILTLPT  117 (148)
T ss_dssp             TCCSEEECCSCGGGCHHHHHTTCCSSSE
T ss_pred             CCCceEEEccCCcchHHHHhcCCCCcCE
Confidence            33  223322   346778888888885

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=4.6e-14  Score=114.41  Aligned_cols=97  Identities=19%  Similarity=0.292  Sum_probs=78.6

Q ss_pred             Cccc-ccCCCCc-eecc--cCCCCEEEEEEeCCCChh--hhhhhHHHHHHHHHH-hcCCCceEEEEEEecCChhHHHHHH
Q 018266           24 GVEF-LLSRQGK-VPLS--SCGGKTICLFFSANWCRP--CKTFTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~--~~~gk~vlv~F~a~wC~~--C~~~~p~~~~~~~~l-~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      .++| +.+.+|+ ++++  +++||+++|.||++||++  |+..+|.|.++++++ ++.+  ++++.|++|.+.+.+.++.
T Consensus        11 ~p~f~l~~~~g~~~~l~~~~~~gk~vll~F~a~~C~~v~C~~~~~~l~~l~~~~~~~~~--~~~v~v~~d~~~~~~~~~~   88 (150)
T 3fw2_A           11 APFFSLPNAKGEKITRSSDAFKQKSLLINFWASWNDSISQKQSNSELREIYKKYKKNKY--IGMLGISLDVDKQQWKDAI   88 (150)
T ss_dssp             CCCCCEEBTTCCEECTTSTTTTTSEEEEEEECTTCCCHHHHHHHHHHHHHHHHHTTCSS--EEEEEEECCSCHHHHHHHH
T ss_pred             CCccEeECCCCCEEecchhhhCCCEEEEEEEeCCCCchHHHHHHHHHHHHHHHhccCCC--eEEEEEEcCCCHHHHHHHH
Confidence            3455 8899999 9999  999999999999999999  999999999999999 6665  9999999998877888887


Q ss_pred             hhCCC--cccccc---cceeeeccccCCCCc
Q 018266           97 KSSDG--TLIEED---LIGLIEDYGADAYPF  122 (358)
Q Consensus        97 ~~~~~--~~~~~~---~~~l~~~~gi~~~P~  122 (358)
                      .....  .++.+.   ...+.+.|++.++|+
T Consensus        89 ~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~  119 (150)
T 3fw2_A           89 KRDTLDWEQVCDFGGLNSEVAKQYSIYKIPA  119 (150)
T ss_dssp             HHTTCCSEEECCSCGGGCHHHHHTTCCSSSE
T ss_pred             HHhCCCceEEEcCcccchHHHHHcCCCccCe
Confidence            66333  223322   346777788777774

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.51  E-value=3.8e-14  Score=108.51  Aligned_cols=71  Identities=20%  Similarity=0.439  Sum_probs=62.7

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|.+|..                       ..++++|
T Consensus        22 ~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~-----~~~~~~vd~~~~-----------------------~~l~~~~   73 (109)
T 3f3q_A           22 AQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYP-----QADFYKLDVDEL-----------------------GDVAQKN   73 (109)
T ss_dssp             TSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             hcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCCC-----------------------HHHHHHc
Confidence            357999999999999999999999999999885     378888888764                       6789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|.++|++++++ +|+++.+
T Consensus        74 ~v~~~Pt~~~~~-~G~~~~~   92 (109)
T 3f3q_A           74 EVSAMPTLLLFK-NGKEVAK   92 (109)
T ss_dssp             TCCSSSEEEEEE-TTEEEEE
T ss_pred             CCCccCEEEEEE-CCEEEEE
Confidence            999999999996 8988876

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=3e-14  Score=112.55  Aligned_cols=99  Identities=18%  Similarity=0.395  Sum_probs=74.0

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchh
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  239 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      +.++..+||+++|+||++||++|+.+.|.+   ..+.+.+.    .++.++.|.++.+.                     
T Consensus        20 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~---------------------   74 (130)
T 2kuc_A           20 LKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFN----RHFVNLKMDMEKGE---------------------   74 (130)
T ss_dssp             HHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHH----HHSEEEEECSSSTT---------------------
T ss_pred             HHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHh----cCeEEEEEecCCcc---------------------
Confidence            444445789999999999999999999998   66666554    45667777666422                     


Q ss_pred             HHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          240 RQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       240 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      ...++++|+|.++|+++++|++|+++.+       ..|...       .++|.+.+++...
T Consensus        75 ~~~~~~~~~v~~~Pt~~~~d~~G~~~~~-------~~G~~~-------~~~l~~~l~~~~~  121 (130)
T 2kuc_A           75 GVELRKKYGVHAYPTLLFINSSGEVVYR-------LVGAED-------APELLKKVKLGVE  121 (130)
T ss_dssp             HHHHHHHTTCCSSCEEEEECTTSCEEEE-------EESCCC-------HHHHHHHHHHHHS
T ss_pred             hHHHHHHcCCCCCCEEEEECCCCcEEEE-------ecCCCC-------HHHHHHHHHHHHH
Confidence            4789999999999999999999999876       344332       4456666665544

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=99.50  E-value=4.7e-14  Score=113.34  Aligned_cols=95  Identities=35%  Similarity=0.704  Sum_probs=75.2

Q ss_pred             ccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCc---cc
Q 018266           28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGT---LI  104 (358)
Q Consensus        28 l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~---~~  104 (358)
                      +.+.+|.+++++++||+++|+||++||++|+.++|.|.++++++++. .+++++.|++|.+.+.+.++.......   +.
T Consensus        14 l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~   92 (144)
T 1o73_A           14 LLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWLALPFD   92 (144)
T ss_dssp             BBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             eecCCCcCcHHHhCCCEEEEEEECcCCHHHHHHHHHHHHHHHHhccC-CCEEEEEEeCCCCHHHHHHHHHhCCceEeecc
Confidence            77888889999999999999999999999999999999999999732 139999999998887788776663321   11


Q ss_pred             c-cccceeeeccccCCCCcc
Q 018266          105 E-EDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~-~~~~~l~~~~gi~~~P~~  123 (358)
                      . +....+++.|++.++|+.
T Consensus        93 ~~~~~~~~~~~~~v~~~Pt~  112 (144)
T 1o73_A           93 QRSTVSELGKTFGVESIPTL  112 (144)
T ss_dssp             CHHHHHHHHHHHTCCSSSEE
T ss_pred             chhHHHHHHHHcCCCCCCEE
Confidence            1 223467778888888853

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.50  E-value=5.2e-14  Score=106.89  Aligned_cols=70  Identities=16%  Similarity=0.274  Sum_probs=53.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.+.++++++.     ++.++.|++|..                       ..++++|+
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~l~~~~~   68 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN-----YVEKIEILLQDM-----------------------QEIAGRYA   68 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT-----TEEEEEEEECCC-------------------------------
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC-----CceEEEEECCCC-----------------------HHHHHhcC
Confidence            57999999999999999999999999998873     478888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~G~~~~~   86 (105)
T 4euy_A           69 VFTGPTVLLF-YNGKEILR   86 (105)
T ss_dssp             -CCCCEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-eCCeEEEE
Confidence            9999999999 68988866

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.50  E-value=4.1e-14  Score=107.22  Aligned_cols=71  Identities=25%  Similarity=0.495  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~-----------------------~~~~~~~~   68 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN-----------------------PETTSQFG   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHST----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCcEEEEEECcCC-----------------------HHHHHHcC
Confidence            56899999999999999999999999999886    4588999988864                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        69 v~~~Pt~~~~-~~G~~~~~   86 (105)
T 1nsw_A           69 IMSIPTLILF-KGGRPVKQ   86 (105)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CccccEEEEE-eCCeEEEE
Confidence            9999999999 89998866

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.50  E-value=1e-13  Score=105.03  Aligned_cols=71  Identities=18%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   70 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYE----GKADILKLDVDEN-----------------------PSTAAKYE   70 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCcEEEEEECCcC-----------------------HHHHHhCC
Confidence            78999999999999999999999999999987    4588999988865                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~G~~~~~   88 (106)
T 3die_A           71 VMSIPTLIVF-KDGQPVDK   88 (106)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CcccCEEEEE-eCCeEEEE
Confidence            9999999999 59988776

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=99.50  E-value=4e-14  Score=114.21  Aligned_cols=95  Identities=32%  Similarity=0.689  Sum_probs=75.8

Q ss_pred             ccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC---ccc
Q 018266           28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG---TLI  104 (358)
Q Consensus        28 l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~---~~~  104 (358)
                      +.+.+|.+++++++||+++|+||++||++|+.++|.|.++++++++. .+++++.|++|.+.+.+.++..+...   .+.
T Consensus        14 l~~~~g~~~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~-~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~   92 (146)
T 1o8x_A           14 LRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHES-KNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFA   92 (146)
T ss_dssp             EEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCCSHHHHHHHHTTCSSEECCGG
T ss_pred             EEcCCCCCcHHHhCCCEEEEEEEccCCHHHHHHHHHHHHHHHHhhhc-CCeEEEEEeCCCCHHHHHHHHHHCCceeeccc
Confidence            77777789999999999999999999999999999999999999842 13999999999888888888766432   111


Q ss_pred             c-cccceeeeccccCCCCcc
Q 018266          105 E-EDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~-~~~~~l~~~~gi~~~P~~  123 (358)
                      . +....+++.|++.++|+.
T Consensus        93 ~~d~~~~~~~~~~v~~~Pt~  112 (146)
T 1o8x_A           93 QSEAVQKLSKHFNVESIPTL  112 (146)
T ss_dssp             GHHHHHHHHHHTTCCSSSEE
T ss_pred             hhhHHHHHHHHhCCCCCCEE
Confidence            1 223567788888888853

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.50  E-value=1.1e-13  Score=105.33  Aligned_cols=71  Identities=30%  Similarity=0.577  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        19 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   71 (108)
T 2trx_A           19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG   71 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------TTHHHHTT
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHHHHHHHHhC----CCcEEEEEECCCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999986    4588888888764                       46889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        72 v~~~Pt~~~~-~~G~~~~~   89 (108)
T 2trx_A           72 IRGIPTLLLF-KNGEVAAT   89 (108)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CcccCEEEEE-eCCEEEEE
Confidence            9999999999 89998876

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=99.50  E-value=8e-14  Score=113.00  Aligned_cols=95  Identities=23%  Similarity=0.412  Sum_probs=78.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-  101 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-  101 (358)
                      ++| +.+ +|. +++++++||+++|+||++||++|+.++|.|.++++++.+.+  ++++.|++|.+.+...++...... 
T Consensus        10 P~f~l~~-~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~   86 (152)
T 3gl3_A           10 PDFALPG-KTGVVKLSDKTGSVVYLDFWASWCGPCRQSFPWMNQMQAKYKAKG--FQVVAVNLDAKTGDAMKFLAQVPAE   86 (152)
T ss_dssp             CCCEEEB-SSSEEEGGGGTTSEEEEEEECTTCTHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSHHHHHHHHHHSCCC
T ss_pred             CceEeeC-CCCeEeHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCC--eEEEEEECCCCHHHHHHHHHHcCCC
Confidence            455 777 888 99999999999999999999999999999999999998877  999999999887777777666333 


Q ss_pred             -cccccccceeeeccccCCCCc
Q 018266          102 -TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 -~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       .++.+....+++.|++.++|+
T Consensus        87 ~~~~~d~~~~~~~~~~v~~~P~  108 (152)
T 3gl3_A           87 FTVAFDPKGQTPRLYGVKGMPT  108 (152)
T ss_dssp             SEEEECTTCHHHHHTTCCSSSE
T ss_pred             CceeECCcchhHHHcCCCCCCe
Confidence             344444556777888877774

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.49  E-value=1.8e-13  Score=104.03  Aligned_cols=71  Identities=27%  Similarity=0.543  Sum_probs=63.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   70 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhC----CceEEEEEECCCC-----------------------HHHHHHCC
Confidence            47899999999999999999999999999986    4588888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~G~~~~~   88 (107)
T 1dby_A           71 IRSIPTIMVF-KGGKKCET   88 (107)
T ss_dssp             CCSSCEEEEE-SSSSEEEE
T ss_pred             CCcCCEEEEE-eCCEEEEE
Confidence            9999999988 89998876

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=99.49  E-value=4.6e-14  Score=116.56  Aligned_cols=95  Identities=29%  Similarity=0.665  Sum_probs=76.9

Q ss_pred             ccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC---ccc
Q 018266           28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG---TLI  104 (358)
Q Consensus        28 l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~---~~~  104 (358)
                      +.+.+|.+++++++||+|+|+|||+||++|+.++|.|.++++++++.. +++++.|++|.+.+.+.++..+...   .+.
T Consensus        34 l~~~~g~v~l~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~~~-~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  112 (165)
T 3s9f_A           34 LRKQADTADMDSLSGKTVFFYFSASWCPPCRGFTPQLVEFYEKHHDSK-NFEIILASWDEEEDDFNAYYAKMPWLSIPFA  112 (165)
T ss_dssp             EEETTEEECSGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHTTCSSEECCTT
T ss_pred             eecCCCcccHHHcCCCEEEEEEECCcChhHHHHHHHHHHHHHHhccCC-CeEEEEEecCCCHHHHHHHHHhCCCcccccC
Confidence            778888899999999999999999999999999999999999998621 3999999999988888888776432   111


Q ss_pred             ccc-cceeeeccccCCCCcc
Q 018266          105 EED-LIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~~~-~~~l~~~~gi~~~P~~  123 (358)
                      ..+ ...+++.|++.++|+.
T Consensus       113 ~~~~~~~l~~~~~v~~~Pt~  132 (165)
T 3s9f_A          113 NRNIVEALTKKYSVESIPTL  132 (165)
T ss_dssp             CHHHHHHHHHHTTCCSSSEE
T ss_pred             chhHHHHHHHHcCCCCCCEE
Confidence            111 2567888888888853

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.49  E-value=1.2e-13  Score=105.88  Aligned_cols=71  Identities=25%  Similarity=0.492  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   74 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYG----DKIEIVKLNIDEN-----------------------PGTAAKYG   74 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhc----CCeEEEEEEcCCC-----------------------HHHHHhCC
Confidence            47899999999999999999999999999986    4588999988864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        75 v~~~Pt~~~~-~~G~~~~~   92 (112)
T 1t00_A           75 VMSIPTLNVY-QGGEVAKT   92 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999988 89998866

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=99.49  E-value=8.4e-14  Score=113.12  Aligned_cols=99  Identities=23%  Similarity=0.478  Sum_probs=78.2

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-hhHHHHHHhh
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-ENGFEEHFKS   98 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-~~~~~~~~~~   98 (358)
                      .+.++| +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.+  +.++.|++|.+ .....++...
T Consensus         6 ~~~p~~~l~~~~g~~~~l~~~~gk~vll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~   83 (154)
T 3kcm_A            6 NPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKP--FRMLCVSIDEGGKVAVEEFFRK   83 (154)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTSS--EEEEEEECCTTHHHHHHHHHHH
T ss_pred             CCCCCeEEEcCCCCEEehhhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhccCC--eEEEEEEcCCcchHHHHHHHHH
Confidence            344556 8899999 99999999999999999999999999999999999998765  99999999976 5556666555


Q ss_pred             CC--CcccccccceeeeccccCCCCc
Q 018266           99 SD--GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        99 ~~--~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ..  ..++.+....+++.|++.++|+
T Consensus        84 ~~~~~~~~~d~~~~~~~~~~v~~~P~  109 (154)
T 3kcm_A           84 TGFTLPVLLDADKRVGKLYGTTGVPE  109 (154)
T ss_dssp             HCCCCCEEECTTCHHHHHHTCCSBCE
T ss_pred             cCCCeeEEecCchHHHHHhCCCCCCe
Confidence            22  2444444556677777777773

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=99.49  E-value=6.9e-14  Score=113.36  Aligned_cols=95  Identities=23%  Similarity=0.407  Sum_probs=78.2

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC--
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG--  101 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~--  101 (358)
                      +| +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.+  +.++.|++|.+.+.+.++......  
T Consensus        12 ~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~~~   89 (152)
T 2lja_A           12 SFSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKD--IHFVSLSCDKNKKAWENMVTKDQLKG   89 (152)
T ss_dssp             SCEEEETTTEEEESTTTTTSEEEEEECCSSCCGGGGTHHHHHHHHHHSTTSS--EEEEEEECCSCHHHHHHHHHHHTCCS
T ss_pred             ccEeecCCCCEeeHHHcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHhccCC--eEEEEEEccCcHHHHHHHHHhcCCCC
Confidence            45 8889999 99999999999999999999999999999999999988755  999999999887777777665322  


Q ss_pred             -cccccccceeeeccccCCCCc
Q 018266          102 -TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 -~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       .++.+....+.+.|++.++|+
T Consensus        90 ~~~~~d~~~~~~~~~~v~~~P~  111 (152)
T 2lja_A           90 IQLHMGTDRTFMDAYLINGIPR  111 (152)
T ss_dssp             EEEECSSCTHHHHHTTCCSSCC
T ss_pred             ceeecCcchhHHHHcCcCCCCE
Confidence             334444556778888888885

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.48  E-value=7.1e-14  Score=111.78  Aligned_cols=94  Identities=26%  Similarity=0.507  Sum_probs=74.9

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      ..++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++
T Consensus        43 ~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~v~~~~~-----------------------~~~~~~   94 (139)
T 3d22_A           43 SRDGKIVLANFSARWCGPSRQIAPYYIELSENYP-----SLMFLVIDVDEL-----------------------SDFSAS   94 (139)
T ss_dssp             HHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHH
T ss_pred             hhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CCEEEEEeCccc-----------------------HHHHHH
Confidence            3468999999999999999999999999998874     478888888764                       678999


Q ss_pred             cCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCCC
Q 018266          247 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR  304 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~  304 (358)
                      |+|.++|+++++ ++|+++.+       ..|. .       .++|.+.+++.+..+|.
T Consensus        95 ~~v~~~Pt~~~~-~~G~~~~~-------~~G~-~-------~~~l~~~l~~~~~~~~~  136 (139)
T 3d22_A           95 WEIKATPTFFFL-RDGQQVDK-------LVGA-N-------KPELHKKITAILDSLPP  136 (139)
T ss_dssp             TTCCEESEEEEE-ETTEEEEE-------EESC-C-------HHHHHHHHHHHHHTSCT
T ss_pred             cCCCcccEEEEE-cCCeEEEE-------EeCC-C-------HHHHHHHHHHHhccCCC
Confidence            999999999999 99999876       2343 1       34566666666655553

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.48  E-value=8.4e-14  Score=112.93  Aligned_cols=69  Identities=26%  Similarity=0.407  Sum_probs=61.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|+|||+||++|+.+.|.|.+++++++    ..+.++.|++|..                       ..++++|+
T Consensus        22 ~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~   74 (149)
T 3gix_A           22 AEKVLVLRFGRDEDPVCLQLDDILSKTSSDLS----KMAAIYLVDVDQT-----------------------AVYTQYFD   74 (149)
T ss_dssp             CSSEEEEEEECTTSHHHHHHHHHHHHHHTTTT----TTEEEEEEETTTC-----------------------CHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCcC-----------------------HHHHHHcC
Confidence            47999999999999999999999999999886    4588888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEE
Q 018266          249 IKGIPALVLIGPDGKTI  265 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~  265 (358)
                      |.++||++++ ++|+++
T Consensus        75 v~~~Pt~~~~-~~G~~v   90 (149)
T 3gix_A           75 ISYIPSTVFF-FNGQHM   90 (149)
T ss_dssp             CCSSSEEEEE-ETTEEE
T ss_pred             CCccCeEEEE-ECCeEE
Confidence            9999999955 889888

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.48  E-value=2e-13  Score=106.20  Aligned_cols=71  Identities=18%  Similarity=0.482  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++.    .++.++.|++|..                       ..++++|+
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~   82 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQH----GKVVMAKVDIDDH-----------------------TDLAIEYE   82 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TSSEEEEEETTTT-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCCCC-----------------------HHHHHHcC
Confidence            47899999999999999999999999999886    4688888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        83 v~~~Pt~~~~-~~G~~~~~  100 (119)
T 1w4v_A           83 VSAVPTVLAM-KNGDVVDK  100 (119)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCcEEEE
Confidence            9999999999 89998866

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.47  E-value=3e-14  Score=117.60  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=63.5

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .+++++||+++|+|||+|||+|+.+.|.|.+++++++     ++.++.|++|.                       ...+
T Consensus        48 ~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~-----~v~~~~v~~d~-----------------------~~~~   99 (167)
T 1z6n_A           48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----NIELAIISKGR-----------------------AEDD   99 (167)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----TEEEEEECHHH-----------------------HHHH
T ss_pred             HHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CcEEEEEECCC-----------------------CHHH
Confidence            3566788999999999999999999999999988763     47788777663                       2456


Q ss_pred             HHHcC---CCceeeEEEECCCCcEEecC
Q 018266          244 CRIFN---IKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       244 ~~~~~---v~~~P~~~lid~~G~v~~~~  268 (358)
                      ++.|.   +.++||++++|++|+++.+.
T Consensus       100 ~~~~~~~~v~~iPt~i~~~~~G~~~~~~  127 (167)
T 1z6n_A          100 LRQRLALERIAIPLVLVLDEEFNLLGRF  127 (167)
T ss_dssp             TTTTTTCSSCCSSEEEEECTTCCEEEEE
T ss_pred             HHHHHHcCCCCcCeEEEECCCCCEEEEE
Confidence            66675   99999999999999998763

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.47  E-value=1e-13  Score=109.43  Aligned_cols=71  Identities=28%  Similarity=0.525  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        39 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   91 (128)
T 2o8v_B           39 ADGAILVDFWAEWCGPAKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYG   91 (128)
T ss_dssp             CSSEEEEEEECSSCHHHHHTHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------CTTSGGGT
T ss_pred             cCCEEEEEEECCCCHHHHHHhHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHHcC
Confidence            57999999999999999999999999999986    4588888888864                       35778999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        92 v~~~Pt~~~~-~~G~~~~~  109 (128)
T 2o8v_B           92 IRGIPTLLLF-KNGEVAAT  109 (128)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCccCEEEEE-eCCEEEEE
Confidence            9999999999 99998866

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.47  E-value=3e-13  Score=104.10  Aligned_cols=83  Identities=20%  Similarity=0.452  Sum_probs=68.6

Q ss_pred             cCCCceeeecc-cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      .++++.+.... -.+++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                  
T Consensus        11 ~l~~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~v~~~~v~~~~~------------------   68 (115)
T 1thx_A           11 TITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDPN------------------   68 (115)
T ss_dssp             ECCGGGHHHHTTTCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTTC------------------
T ss_pred             EeeccchhhHhhcCCceEEEEEECCCCHHHHHhHHHHHHHHHHhC----CcEEEEEEEcCCC------------------
Confidence            34444443222 257899999999999999999999999999987    4588999988864                  


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                           ..++++|++.++|+++++ ++|+++.+
T Consensus        69 -----~~~~~~~~v~~~Pt~~~~-~~G~~~~~   94 (115)
T 1thx_A           69 -----PTTVKKYKVEGVPALRLV-KGEQILDS   94 (115)
T ss_dssp             -----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCCceeEEEEE-cCCEEEEE
Confidence                 578999999999999999 99998876

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.47  E-value=1.3e-14  Score=120.68  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=65.9

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHH--HhhhcCCccccccCc
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSIMPWLAIPYED  237 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~--~~~~~~~~~~~~~~~  237 (358)
                      +.++..+||+|+|+|||+||++|+.+.+.+   .++.+.++    .++.++.|++|...+...  .......+..+....
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~----~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~  115 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIIN----NDYVLITLYVDNKTPLTEPVKIMENGTERTLRTVG  115 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHH----HHCEEEEEETTCCCEEEEEEEEEETTEEEEEEEHH
T ss_pred             HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc----CCEEEEEEecCcccccchhhhhhhcchhhhhhhhh
Confidence            344556799999999999999999974444   55555554    368899999886531100  000011111222222


Q ss_pred             hhHHHH-HHHcCCCceeeEEEECCCCcEEec
Q 018266          238 RARQDL-CRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       238 ~~~~~l-~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +....+ .+.|++.++|++++||++|+++.+
T Consensus       116 ~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~  146 (172)
T 3f9u_A          116 DKWSYLQRVKFGANAQPFYVLIDNEGNPLNK  146 (172)
T ss_dssp             HHHHHHHHHHHSCCCSSEEEEECTTSCBSSC
T ss_pred             hhhhHHHHHHcCCCCcceEEEECCCCCEEee
Confidence            223333 589999999999999999999877

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=99.47  E-value=9.5e-14  Score=113.38  Aligned_cols=96  Identities=11%  Similarity=0.123  Sum_probs=72.6

Q ss_pred             ccc-ccC--CCCc-eecccCCCCEEEEEEeCCCChhhhhh-hHHHHHHHHHHhcCCCceEEEEEEec------CChhHHH
Q 018266           25 VEF-LLS--RQGK-VPLSSCGGKTICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELEVIFISFD------HDENGFE   93 (358)
Q Consensus        25 ~~~-l~~--~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~-~p~~~~~~~~l~~~~~~~~iv~i~~d------~~~~~~~   93 (358)
                      ++| +.+  .+|+ +++++++||+++|+||++||++|+.+ +|.|.++++++++.+  +.++.|++|      .+.+..+
T Consensus         7 P~f~l~~~~~~g~~~~l~~~~gk~vlv~f~a~wC~~C~~~~~~~l~~l~~~~~~~~--v~~v~v~~~~~~~~~~~~~~~~   84 (158)
T 3eyt_A            7 PELQIQQWFNSATDLTLADLRGKVIVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDK--VAVLGLHTVFEHHEAMTPISLK   84 (158)
T ss_dssp             CCCCEEEEESCSSCCCTGGGTTSEEEEEEECTTCHHHHHTHHHHHHHHHHHSCTTT--EEEEEEECCCSCGGGSCHHHHH
T ss_pred             CCceehhhhcCCCccCHHHhCCCEEEEEEECCcCcchhhhhhHHHHHHHHHhCcCC--EEEEEEEecccccccCCHHHHH
Confidence            455 555  4788 99999999999999999999999996 999999999998766  999999984      3566666


Q ss_pred             HHHhhCCC--cccccccc-----eeeeccccCCCCc
Q 018266           94 EHFKSSDG--TLIEEDLI-----GLIEDYGADAYPF  122 (358)
Q Consensus        94 ~~~~~~~~--~~~~~~~~-----~l~~~~gi~~~P~  122 (358)
                      ++......  .++.+...     .+++.|++.++|+
T Consensus        85 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~  120 (158)
T 3eyt_A           85 AFLHEYRIKFPVGVDQPGDGAMPRTMAAYQMRGTPS  120 (158)
T ss_dssp             HHHHHTTCCSCEEEECCCSSSSCHHHHHTTCCSSSE
T ss_pred             HHHHHcCCCceEEEcCccchhhHHHHHHcCCCCCCE
Confidence            66665322  22222222     4677777777774

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.47  E-value=1.8e-13  Score=107.98  Aligned_cols=70  Identities=23%  Similarity=0.454  Sum_probs=61.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++    ..+.++.|++|..                       ..++++|+
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~l~~~~~   86 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALK----DVVKVGAVNADKH-----------------------QSLGGQYG   86 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTT----TTSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhc----CceEEEEEeCCCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999986    4588888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEE
Q 018266          249 IKGIPALVLIGPDGKTI  265 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~  265 (358)
                      |.++|++++++++|+++
T Consensus        87 v~~~Pt~~~~~~~~~~~  103 (130)
T 2dml_A           87 VQGFPTIKIFGANKNKP  103 (130)
T ss_dssp             CCSSSEEEEESSCTTSC
T ss_pred             CCccCEEEEEeCCCCeE
Confidence            99999999998888733

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=99.47  E-value=2e-14  Score=116.37  Aligned_cols=106  Identities=8%  Similarity=0.141  Sum_probs=75.8

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHH--HhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYN--ELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~--~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ..+|+|+|+|||+||++|+.+.|.+.+..+  ++.     +..++.|.+|.+.                      ..+..
T Consensus        42 ~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~-----~~~fv~V~vD~e~----------------------~~~~~   94 (151)
T 3ph9_A           42 KSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMA-----QNKFIMLNLMHET----------------------TDKNL   94 (151)
T ss_dssp             HHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHH-----HHTCEEEEESSCC----------------------SCGGG
T ss_pred             HcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHh-----hcCeEEEEecCCc----------------------hhhHh
Confidence            358999999999999999999998876422  221     1236667776331                      12346


Q ss_pred             HcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCCC
Q 018266          246 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALPR  304 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~~  304 (358)
                      .|++.++||++++|++|+++.+..    -.++...|.+......++.+.+++.++.+..
T Consensus        95 ~~~v~~~PT~~f~~~~G~~v~~~~----G~~~~~~~~~~~~~~~~ll~~~~~al~~~~~  149 (151)
T 3ph9_A           95 SPDGQYVPRIMFVDPSLTVRADIA----GRYSNRLYTYEPRDLPLLIENMKKALRLIQS  149 (151)
T ss_dssp             CTTCCCSSEEEEECTTSCBCTTCC----CSCTTSTTCCCGGGHHHHHHHHHHHHSCCC-
T ss_pred             hcCCCCCCEEEEECCCCCEEEEEe----CCcCCcccccchhhHHHHHHHHHHHHHHHhc
Confidence            789999999999999999988731    1223355667777788888888887776653

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.47  E-value=2.5e-13  Score=103.92  Aligned_cols=71  Identities=24%  Similarity=0.478  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   73 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYE----ESFGFYYVDVEEE-----------------------KTLFQRFS   73 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcC----CceEEEEEECCcC-----------------------hhHHHhcC
Confidence            46899999999999999999999999999986    4688999988864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        74 v~~~Pt~~~~-~~g~~~~~   91 (111)
T 3gnj_A           74 LKGVPQILYF-KDGEYKGK   91 (111)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-ECCEEEEE
Confidence            9999999999 78888765

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.47  E-value=1.1e-13  Score=109.66  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=77.3

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-  101 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-  101 (358)
                      +++ +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.  +  +.++.|++|.+.+..+++..+... 
T Consensus         5 p~~~l~~~~g~~~~l~~~~~k~~lv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~~   80 (136)
T 1lu4_A            5 LQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP--A--VTFVGIATRADVGAMQSFVSKYNLN   80 (136)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHHTCC
T ss_pred             CCeEeecCCCCeecHHHhCCCEEEEEEECCcChhHHHHHHHHHHHHHHCC--C--cEEEEEEcCCCHHHHHHHHHHcCCC
Confidence            345 8889999 99999999999999999999999999999999999886  3  899999999888777777666322 


Q ss_pred             -cccccccceeeeccccCCCCc
Q 018266          102 -TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 -~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       .++.+....+++.|++.++|+
T Consensus        81 ~~~~~d~~~~~~~~~~i~~~P~  102 (136)
T 1lu4_A           81 FTNLNDADGVIWARYNVPWQPA  102 (136)
T ss_dssp             SEEEECTTSHHHHHTTCCSSSE
T ss_pred             ceEEECCchhHHHhcCCCCCCE
Confidence             344454566777888877774

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=99.47  E-value=1.1e-13  Score=112.37  Aligned_cols=96  Identities=18%  Similarity=0.395  Sum_probs=69.6

Q ss_pred             CcccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-
Q 018266           24 GVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-  101 (358)
Q Consensus        24 ~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-  101 (358)
                      ..++....+|+ +++++++||+|+|+||++||++|+.++|.|.+++++++..+  ++++.|++|. .+...++...... 
T Consensus         5 a~~~~~~~~G~~~~l~~~~gk~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~-~~~~~~~~~~~~~~   81 (151)
T 3raz_A            5 ADELAGWKDNTPQSLQSLKAPVRIVNLWATWCGPCRKEMPAMSKWYKAQKKGS--VDMVGIALDT-SDNIGNFLKQTPVS   81 (151)
T ss_dssp             --CEEETTTCCEECGGGCCSSEEEEEEECTTCHHHHHHHHHHHHHHHTSCTTT--EEEEEEESSC-HHHHHHHHHHSCCS
T ss_pred             cchhhcccCCCEecHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCC-hHHHHHHHHHcCCC
Confidence            34554447999 99999999999999999999999999999999999996655  9999999975 4455566554222 


Q ss_pred             -ccccc---ccceeeeccc--cCCCCc
Q 018266          102 -TLIEE---DLIGLIEDYG--ADAYPF  122 (358)
Q Consensus       102 -~~~~~---~~~~l~~~~g--i~~~P~  122 (358)
                       .++.+   ....+++.||  +.++|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~v~~~P~  108 (151)
T 3raz_A           82 YPIWRYTGANSRNFMKTYGNTVGVLPF  108 (151)
T ss_dssp             SCEEEECCSCHHHHHHTTTCCSCCSSE
T ss_pred             CceEecCccchHHHHHHhCCccCCCCE
Confidence             22211   1234566666  666663

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.46  E-value=2.1e-13  Score=111.33  Aligned_cols=71  Identities=24%  Similarity=0.491  Sum_probs=63.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|+++++++.    .++.++.|++|..                       ..++++|+
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~  115 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLA----GQVRLAKIDTQAH-----------------------PAVAGRHR  115 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTS-----------------------THHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCEEEEEEeCCcc-----------------------HHHHHHcC
Confidence            57899999999999999999999999999997    4588888888864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus       116 i~~~Pt~~~~-~~G~~~~~  133 (155)
T 2ppt_A          116 IQGIPAFILF-HKGRELAR  133 (155)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCeEEEE
Confidence            9999999999 89998876

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.46  E-value=3.4e-13  Score=102.33  Aligned_cols=71  Identities=30%  Similarity=0.549  Sum_probs=63.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        19 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   71 (107)
T 2i4a_A           19 ASGLVLVDFWAEWCGPCKMIGPALGEIGKEFA----GKVTVAKVNIDDN-----------------------PETPNAYQ   71 (107)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHHT----TSEEEEEEETTTC-----------------------CHHHHHTT
T ss_pred             CCCEEEEEEECCCChhHHHHhHHHHHHHHHhC----CcEEEEEEECCCC-----------------------HHHHHhcC
Confidence            57899999999999999999999999999986    4688888888764                       47889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        72 v~~~Pt~~~~-~~G~~~~~   89 (107)
T 2i4a_A           72 VRSIPTLMLV-RDGKVIDK   89 (107)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCccCEEEEE-eCCEEEEE
Confidence            9999999999 99998876

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.46  E-value=2.7e-13  Score=104.00  Aligned_cols=72  Identities=22%  Similarity=0.579  Sum_probs=61.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++.   .++.++.|+++..                       ..++++|+
T Consensus        20 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~~vd~~~~-----------------------~~~~~~~~   73 (112)
T 3d6i_A           20 GDKLIVLYFHTSWAEPCKALKQVFEAISNEPSN---SNVSFLSIDADEN-----------------------SEISELFE   73 (112)
T ss_dssp             TTCCEEEEEECCC--CHHHHHHHHHHHHHCGGG---TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCC---CCEEEEEEecccC-----------------------HHHHHHcC
Confidence            478999999999999999999999999998754   5688999988864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        74 v~~~Pt~~~~-~~G~~~~~   91 (112)
T 3d6i_A           74 ISAVPYFIII-HKGTILKE   91 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCEEEEE
Confidence            9999999999 79998876

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.46  E-value=2.3e-13  Score=104.28  Aligned_cols=72  Identities=13%  Similarity=0.370  Sum_probs=61.2

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++++++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                      ...++++|
T Consensus        22 ~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~----------------------~~~~~~~~   74 (111)
T 2pu9_C           22 AGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKEL   74 (111)
T ss_dssp             CTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHH
T ss_pred             cCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCC-----CeEEEEEecCcc----------------------hHHHHHHc
Confidence            468999999999999999999999999999875     378888888732                      36889999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++|+++++ ++|+++.+
T Consensus        75 ~v~~~Pt~~~~-~~G~~~~~   93 (111)
T 2pu9_C           75 GIRVVPTFKIL-KENSVVGE   93 (111)
T ss_dssp             CCSBSSEEEEE-SSSSEEEE
T ss_pred             CCCeeeEEEEE-eCCcEEEE
Confidence            99999996555 99998876

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.46  E-value=6.5e-14  Score=131.45  Aligned_cols=135  Identities=16%  Similarity=0.200  Sum_probs=82.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC---ceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT---ELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~---~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++++|+|+||||||+||+.++|.|+++++.+++.++   .+.++.|+++.+.                    .++++|+|
T Consensus        21 ~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~--------------------~l~~~~~v   80 (382)
T 2r2j_A           21 NADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS--------------------DIAQRYRI   80 (382)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH--------------------HHHHHTTC
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH--------------------HHHHhcCC
Confidence            479999999999999999999999999999965321   2677777776554                    57888999


Q ss_pred             CCCCcchHhHHH-HHh-hhhhhhccchhhHhhhhccCCceecCCC-ceeeeccc-CCcEEEEEEeccCCcccHhhHHHHH
Q 018266          118 DAYPFTRKRREE-LKA-IDDSKRQGGKLEQLLAIEGRDYVLSRDH-RKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       118 ~~~P~~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~p~f~l~~~g-~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~  193 (358)
                      .+||+....... ... .+.+.+....+..++.....+....+++ +.+.  .+ ..+.++|.|++.++.+   ..+.+.
T Consensus        81 ~~~Pt~~~f~~G~~~~~~~~G~~~~~~l~~~i~~~~~~~v~~l~~~~~l~--~l~~~~~~~v~ff~~~~~~---~~~~f~  155 (382)
T 2r2j_A           81 SKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQKSDPIQEIRDLAEIT--TLDRSKRNIIGYFEQKDSD---NYRVFE  155 (382)
T ss_dssp             CEESEEEEEETTEEEEEECCSCCSHHHHHHHHHHHHSCCCEEC--------------CCEEEEEESCSSSH---HHHHHH
T ss_pred             CcCCEEEEEeCCcEeeeeecCcchHHHHHHHHHHhccCCceecCCHHHHH--HhcCCCCEEEEEECCCCCh---hHHHHH
Confidence            999975432211 001 1233333444555444332222212211 1121  12 2456778888876544   355678


Q ss_pred             HHHHHhh
Q 018266          194 EVYNELK  200 (358)
Q Consensus       194 ~l~~~~~  200 (358)
                      +++..++
T Consensus       156 ~~A~~~~  162 (382)
T 2r2j_A          156 RVANILH  162 (382)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            8888886

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=99.46  E-value=1.3e-13  Score=110.49  Aligned_cols=96  Identities=20%  Similarity=0.481  Sum_probs=77.7

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC---ChhHHHHHHhh
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKS   98 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~---~~~~~~~~~~~   98 (358)
                      .+++ +.+.+|. +++++ +||+++|.||++||++|+.++|.|.++++++...+  +.++.|++|.   +.+.+.++...
T Consensus        15 ~p~~~l~~~~g~~~~l~~-~gk~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~~~~~   91 (145)
T 3erw_A           15 PAVFLMKTIEGEDISIPN-KGQKTILHFWTSWCPPCKKELPQFQSFYDAHPSDS--VKLVTVNLVNSEQNQQVVEDFIKA   91 (145)
T ss_dssp             CCEEEEECTTSCEEEESC-TTSEEEEEEECSSCHHHHHHHHHHHHHHHHCCCSS--EEEEEEECGGGSSCHHHHHHHHHH
T ss_pred             CCCceeecCCCCEEeHHH-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcCCCC--EEEEEEEccCCcCCHHHHHHHHHH
Confidence            3455 8899999 99999 99999999999999999999999999999987655  9999999985   66677777665


Q ss_pred             CCC--cccccccceeeeccccCCCCc
Q 018266           99 SDG--TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        99 ~~~--~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ...  .++.+....+++.|++.++|+
T Consensus        92 ~~~~~~~~~d~~~~~~~~~~v~~~P~  117 (145)
T 3erw_A           92 NKLTFPIVLDSKGELMKEYHIITIPT  117 (145)
T ss_dssp             TTCCSCEEECSSSHHHHHTTCCEESE
T ss_pred             cCCceeEEEcCchhHHHhcCcCccCe
Confidence            333  344455556778888887775

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=99.19  E-value=5.1e-15  Score=117.03  Aligned_cols=83  Identities=25%  Similarity=0.518  Sum_probs=67.2

Q ss_pred             CceeeecccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .+.+.+....+|+++|+||++||++|+.+.|.+   .++.+.++    .++.++.|+++.+.                  
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~----~~~~~~~vd~~~~~------------------   66 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLE----ARFVVASVSVDTPE------------------   66 (130)
Confidence            556677777899999999999999999999999   88877765    45667777665332                  


Q ss_pred             chhHHHHHHHcCCCceeeEEEECC-CCcE--Eec
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGP-DGKT--IST  267 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~-~G~v--~~~  267 (358)
                         ...+++.|+|.++|+++++|+ +|++  +.+
T Consensus        67 ---~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~~   97 (130)
T 2lst_A           67 ---GQELARRYRVPGTPTFVFLVPKAGAWEEVGR   97 (130)
Confidence               467889999999999999996 5887  655

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.45  E-value=1.1e-13  Score=112.20  Aligned_cols=102  Identities=17%  Similarity=0.280  Sum_probs=77.6

Q ss_pred             cccccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-ChhHHHHH
Q 018266           19 VLASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DENGFEEH   95 (358)
Q Consensus        19 ~l~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-~~~~~~~~   95 (358)
                      +.....++| +.+.+|+ +++++++||+++|.||++||++|+.+.|.+.++++++...+  +.++.|+.+. +.+...++
T Consensus         3 ~~G~~~p~~~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~   80 (153)
T 2l5o_A            3 LDSKTAPAFSLPDLHGKTVSNADLQGKVTLINFWFPSCPGCVSEMPKIIKTANDYKNKN--FQVLAVAQPIDPIESVRQY   80 (153)
T ss_dssp             -CCTTCCSCEEECTTSCEEEHHHHTTCEEEEEEECTTCTTHHHHHHHHHHHHHHGGGTT--EEEEEEECTTSCHHHHHHH
T ss_pred             CCCCCCCCcEeecCCCCCccHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhccCC--eEEEEEecCCCCHHHHHHH
Confidence            334444566 8899999 99999999999999999999999999999999999998766  8999999864 34555565


Q ss_pred             HhhCCC--cccccccceeeeccccCCCCc
Q 018266           96 FKSSDG--TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        96 ~~~~~~--~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ......  .++.+....+++.|++.++|+
T Consensus        81 ~~~~~~~~~~~~d~~~~~~~~~~i~~~P~  109 (153)
T 2l5o_A           81 VKDYGLPFTVMYDADKAVGQAFGTQVYPT  109 (153)
T ss_dssp             HHHTTCCSEEEECSSCHHHHHHTCCSSSE
T ss_pred             HHHcCCCceEEcCchHHHHHHcCCCccCe
Confidence            544222  334444456677777777774

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=99.45  E-value=3.6e-13  Score=112.87  Aligned_cols=72  Identities=19%  Similarity=0.353  Sum_probs=63.1

Q ss_pred             ccc-ccCC--CCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCce------EEEEEEecC-ChhHHH
Q 018266           25 VEF-LLSR--QGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTEL------EVIFISFDH-DENGFE   93 (358)
Q Consensus        25 ~~~-l~~~--~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~------~iv~i~~d~-~~~~~~   93 (358)
                      ++| +.+.  +|+ +++++++||+++|+||++||++|+.++|.|.++++++++.+  +      .++.|++|. +.+.++
T Consensus        38 p~f~l~~~~~~g~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~~~~~v~~v~v~~d~~~~~~~~  115 (183)
T 3lwa_A           38 PDIGGDSLMEEGTQINLSDFENQVVILNAWGQWCAPCRSESDDLQIIHEELQAAG--NGDTPGGTVLGINVRDYSRDIAQ  115 (183)
T ss_dssp             CCCEEEBSSSTTCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHCC-----CCSEEEEEEECSCCCHHHHH
T ss_pred             CceeccccccCCcEecHHHhCCCEEEEEEECCcCHhHHHHHHHHHHHHHHHHhcC--CCccCCcEEEEEECCCCCHHHHH
Confidence            355 8888  999 99999999999999999999999999999999999998876  6      999999998 677777


Q ss_pred             HHHhh
Q 018266           94 EHFKS   98 (358)
Q Consensus        94 ~~~~~   98 (358)
                      ++...
T Consensus       116 ~~~~~  120 (183)
T 3lwa_A          116 DFVTD  120 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76554

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=99.45  E-value=1.5e-13  Score=114.58  Aligned_cols=105  Identities=22%  Similarity=0.330  Sum_probs=81.6

Q ss_pred             CCCCceecccccC-ccc-ccCCCC--c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           12 DSSDFLTVLASEG-VEF-LLSRQG--K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        12 ~~~~~~~~l~~~~-~~~-l~~~~g--~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +...+.++..+.. ++| +.+.+|  . +++++++||+++|+||++||++|+.++|.|.+++++    +  ++++.|+++
T Consensus        23 ~~~~~~~~~~G~~~P~f~l~~~~g~~~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~vs~~   96 (176)
T 3kh7_A           23 DPSELPSALIGKPFPAFDLPSVQDPARRLTEADLKGKPALVNVWGTWCPSCRVEHPELTRLAEQ----G--VVIYGINYK   96 (176)
T ss_dssp             CGGGSTTTTTTSBCCCCEEEBSSCTTSEEEGGGGCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CEEEEEEES
T ss_pred             CcccccccccCCcCCCcEecccCCCCceecHHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHC----C--CEEEEEeCC
Confidence            3444556666544 456 888888  7 999999999999999999999999999999998875    3  899999998


Q ss_pred             CChhHHHHHHhhCCCc---ccccccceeeeccccCCCCc
Q 018266           87 HDENGFEEHFKSSDGT---LIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .+.+.+.++.......   ++.+....+++.|++.++|+
T Consensus        97 d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  135 (176)
T 3kh7_A           97 DDNAAAIKWLNELHNPYLLSISDADGTLGLDLGVYGAPE  135 (176)
T ss_dssp             CCHHHHHHHHHHTTCCCSEEEEETTCHHHHHHTCCSSCE
T ss_pred             CCHHHHHHHHHHcCCCCceEEECCcchHHHHcCCCCCCe
Confidence            8888888887764332   33444556777777777763

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=99.45  E-value=2.9e-13  Score=111.15  Aligned_cols=73  Identities=27%  Similarity=0.522  Sum_probs=64.8

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      .++| +.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++.+.+  +.++.|++|.+.+.+.++...
T Consensus        14 ~p~~~l~~~~g~~~~l~~~~gk~vlv~f~~~~C~~C~~~~~~l~~l~~~~~~~~--v~~v~v~~d~~~~~~~~~~~~   88 (165)
T 3or5_A           14 APSFSGVTVDGKPFSSASLKGKAYIVNFFATWCPPCRSEIPDMVQVQKTWASRG--FTFVGIAVNEQLPNVKNYMKT   88 (165)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTCEEEEEEECTTSHHHHHHHHHHHHHHHHHTTTT--EEEEEEECSCCHHHHHHHHHH
T ss_pred             CCCceeeCCCCCEechhHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhccCC--eEEEEEECCCCHHHHHHHHHH
Confidence            3455 8899999 99999999999999999999999999999999999998776  999999999887777766444

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.45  E-value=5.3e-13  Score=104.96  Aligned_cols=85  Identities=8%  Similarity=0.121  Sum_probs=66.6

Q ss_pred             cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHHHHHHhhhcCCccccc
Q 018266          157 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  234 (358)
Q Consensus       157 ~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  234 (358)
                      .++++.+..... .+++++|+||++||++|+.+.|.+.++++++... ...++.++.|.++..                 
T Consensus        19 ~l~~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~-----------------   81 (127)
T 3h79_A           19 ELTDETFDSIVMDPEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKY-----------------   81 (127)
T ss_dssp             ECCTTTHHHHHTCTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTC-----------------
T ss_pred             ECChhhHHHHHhCCCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEcccc-----------------
Confidence            555555543332 4799999999999999999999999999987531 225678888887754                 


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                            ..++++|+|.++||+++++++|++
T Consensus        82 ------~~l~~~~~v~~~Pt~~~~~~g~~~  105 (127)
T 3h79_A           82 ------PDVIERMRVSGFPTMRYYTRIDKQ  105 (127)
T ss_dssp             ------HHHHHHTTCCSSSEEEEECSSCSS
T ss_pred             ------HhHHHhcCCccCCEEEEEeCCCCC
Confidence                  689999999999999999766653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.45  E-value=5.6e-13  Score=104.51  Aligned_cols=70  Identities=21%  Similarity=0.502  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|+
T Consensus        37 ~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~~   88 (124)
T 1xfl_A           37 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDEL-----------------------KSVASDWA   88 (124)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC-----CcEEEEEECccC-----------------------HHHHHHcC
Confidence            58999999999999999999999999998874     477888887754                       67899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        89 v~~~Pt~~~~-~~G~~~~~  106 (124)
T 1xfl_A           89 IQAMPTFMFL-KEGKILDK  106 (124)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCccCEEEEE-ECCEEEEE
Confidence            9999999888 89998876

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=99.17  E-value=7e-15  Score=117.97  Aligned_cols=96  Identities=29%  Similarity=0.564  Sum_probs=77.1

Q ss_pred             ccCCCCc-eeccc-CCCC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCc--
Q 018266           28 LLSRQGK-VPLSS-CGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGT--  102 (358)
Q Consensus        28 l~~~~g~-v~l~~-~~gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~--  102 (358)
                      |.+.+|+ +++++ ++|| +++|+||++||++|+.++|.|.++++++++.+.++.++.|++|.+.+.+.++.......  
T Consensus         9 l~~~~g~~~~l~~~~~gk~~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~   88 (143)
T 2lus_A            9 LVKKNRCEVNANEALKDKDIIGFYFSAHWCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWL   88 (143)
Confidence            7888999 99999 9999 99999999999999999999999999996554559999999997766666665553221  


Q ss_pred             ---ccccccceeeeccccCCCCcc
Q 018266          103 ---LIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       103 ---~~~~~~~~l~~~~gi~~~P~~  123 (358)
                         +..+....+++.|++.++|+.
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~~P~~  112 (143)
T 2lus_A           89 AIPYRSGPASNVTAKYGITGIPAL  112 (143)
Confidence               222333578889999888864

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.45  E-value=4.3e-13  Score=102.80  Aligned_cols=70  Identities=21%  Similarity=0.394  Sum_probs=62.5

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|++
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v   76 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDAV-----------------------AAVAEAAGI   76 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTT-----------------------HHHHHHHTC
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcC----CCeEEEEEECCch-----------------------HHHHHHcCC
Confidence            7899999999999999999999999999886    4688888888764                       678999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|+++++ ++|+++.+
T Consensus        77 ~~~Pt~~~~-~~G~~~~~   93 (112)
T 1ep7_A           77 TAMPTFHVY-KDGVKADD   93 (112)
T ss_dssp             CBSSEEEEE-ETTEEEEE
T ss_pred             CcccEEEEE-ECCeEEEE
Confidence            999998888 89998876

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.44  E-value=3.6e-13  Score=101.41  Aligned_cols=70  Identities=17%  Similarity=0.491  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.+.+++++++    . +.++.|++|..                       ..++++|+
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~-~~~~~v~~~~~-----------------------~~~~~~~~   66 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYP----Q-VGFGKLNSDEN-----------------------PDIAARYG   66 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcC----C-ceEEEEECCCC-----------------------HHHHHhCC
Confidence            57899999999999999999999999998885    3 88888888864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        67 v~~~Pt~~~~-~~g~~~~~   84 (104)
T 2e0q_A           67 VMSLPTVIFF-KDGEPVDE   84 (104)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             ccccCEEEEE-ECCeEhhh
Confidence            9999999999 89998865

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.44  E-value=2.6e-13  Score=109.05  Aligned_cols=71  Identities=17%  Similarity=0.374  Sum_probs=62.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~-----------------------~~~~~~~~   74 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYE   74 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhC----CCeEEEEEccccC-----------------------HHHHHHcC
Confidence            47999999999999999999999999999986    4688888888864                       35788999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++..
T Consensus        75 i~~~Pt~~~~-~~G~~v~~   92 (142)
T 1qgv_A           75 LYDPCTVMFF-FRNKHIMI   92 (142)
T ss_dssp             SCSSCEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCcEEEE
Confidence            9999999999 68887754

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.44  E-value=3.4e-13  Score=102.57  Aligned_cols=71  Identities=24%  Similarity=0.501  Sum_probs=63.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|+
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   69 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYE----GKLLVAKLDVDEN-----------------------PKTAMRYR   69 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhh----CceEEEEEECCCC-----------------------HhHHHhCC
Confidence            47899999999999999999999999999986    4688888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~g~~~~~   87 (109)
T 2yzu_A           70 VMSIPTVILF-KDGQPVEV   87 (109)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCcEeee
Confidence            9999999999 89998865

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.44  E-value=4.3e-13  Score=107.19  Aligned_cols=84  Identities=19%  Similarity=0.400  Sum_probs=66.0

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+......+|+++|+||++||++|+.+.|.|.+++++++. .+.++.++.|.++..                   
T Consensus        21 ~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~~-------------------   80 (140)
T 2dj1_A           21 VLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKD-NDPPIAVAKIDATSA-------------------   80 (140)
T ss_dssp             ECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHS-SSSCCEEEEECTTTC-------------------
T ss_pred             EcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCceEEEEEeCccc-------------------
Confidence            445555543334579999999999999999999999999999985 222477777766643                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                          ..++++|+|.++|+++++ ++|++.
T Consensus        81 ----~~~~~~~~v~~~Pt~~~~-~~G~~~  104 (140)
T 2dj1_A           81 ----SMLASKFDVSGYPTIKIL-KKGQAV  104 (140)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHHCCCCccCeEEEE-ECCcEE
Confidence                678999999999999999 788844

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=6.3e-13  Score=104.33  Aligned_cols=80  Identities=19%  Similarity=0.304  Sum_probs=64.8

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+. ..+++ .++|+||++||++|+.+.|.|.+++++++.   .++.++.|+++..                   
T Consensus        11 ~l~~~~f~-~~~~~-~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~---~~v~~~~vd~~~~-------------------   66 (126)
T 1x5e_A           11 VITDENWR-ELLEG-DWMIEFYAPWCPACQNLQPEWESFAEWGED---LEVNIAKVDVTEQ-------------------   66 (126)
T ss_dssp             ECCTTTHH-HHTSS-EEEEEEECSSCHHHHHHHHHHHHHHHHHGG---GTCEEEEEETTTC-------------------
T ss_pred             EecHHHHH-HHhCC-CEEEEEECCCCHHHHHHhHHHHHHHHHhcc---CCeEEEEEECcCC-------------------
Confidence            44444443 22334 499999999999999999999999999874   4788988988864                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                          ..++++|+|.++|+++++ ++|++.
T Consensus        67 ----~~~~~~~~v~~~Pt~~~~-~~G~~~   90 (126)
T 1x5e_A           67 ----PGLSGRFIINALPTIYHC-KDGEFR   90 (126)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEE
T ss_pred             ----HHHHHHcCCcccCEEEEE-eCCeEE
Confidence                578999999999999999 889864

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.44  E-value=4.8e-13  Score=107.18  Aligned_cols=71  Identities=14%  Similarity=0.283  Sum_probs=63.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|.+|..                       ..++++|+
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-----------------------~~l~~~~~   75 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYG----SSAVFGRINIATN-----------------------PWTAEKYG   75 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhC----CceEEEEEECCcC-----------------------HhHHHHCC
Confidence            47899999999999999999999999999997    4588999988865                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        76 v~~~Pt~~~~-~~G~~~~~   93 (140)
T 3hz4_A           76 VQGTPTFKFF-CHGRPVWE   93 (140)
T ss_dssp             CCEESEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-eCCcEEEE
Confidence            9999999999 88988765

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=99.44  E-value=1e-13  Score=113.85  Aligned_cols=94  Identities=12%  Similarity=0.231  Sum_probs=76.4

Q ss_pred             cccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-----ChhHHHHHHhhCC
Q 018266           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKSSD  100 (358)
Q Consensus        27 ~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~  100 (358)
                      .+.+.+|+ +++++++||+++|+||++||++|+.++|.|.+++++++..+  ++++.|++|.     +.+.+.++.....
T Consensus        22 ~l~~~~g~~~~~~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~   99 (164)
T 2h30_A           22 TMKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQAEKWAQDAKFSS--ANLITVASPGFLHEKKDGEFQKWYAGLN   99 (164)
T ss_dssp             TCEETTSSBGGGGCCTTSCEEEEECCTTCHHHHHHHHHHHHHHTCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             ccCCCCCCEeeHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCC--cEEEEEEcCCCccccCHHHHHHHHHhCC
Confidence            68889999 99999999999999999999999999999999999988776  9999999863     3445666655522


Q ss_pred             ---CcccccccceeeeccccCCCCc
Q 018266          101 ---GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 ---~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                         ..+..+....+++.|++.++|+
T Consensus       100 ~~~~~~~~d~~~~~~~~~~v~~~P~  124 (164)
T 2h30_A          100 YPKLPVVTDNGGTIAQNLNISVYPS  124 (164)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSE
T ss_pred             CCcceEEEcCchHHHHHcCCCccce
Confidence               2344555567788888888885

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.44  E-value=5e-13  Score=101.11  Aligned_cols=71  Identities=20%  Similarity=0.434  Sum_probs=62.6

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++|+++|+||++||++|+.+.|.+.+++++++     ++.++.|+.|..                       ..+++.|
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~   69 (105)
T 3m9j_A           18 AGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYS-----NVIFLEVDVDDC-----------------------QDVASES   69 (105)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHST-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCeEEEEEECCCChhhHHHHHHHHHHHHHcc-----CeEEEEEEhhhh-----------------------HHHHHHc
Confidence            358999999999999999999999999999885     378888888764                       5789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++|+++++ ++|+++.+
T Consensus        70 ~v~~~Pt~~~~-~~g~~~~~   88 (105)
T 3m9j_A           70 EVKSMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             TCCBSSEEEEE-ETTEEEEE
T ss_pred             CCCcCcEEEEE-ECCeEEEE
Confidence            99999999999 88888766

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=99.44  E-value=2.5e-13  Score=107.46  Aligned_cols=94  Identities=18%  Similarity=0.268  Sum_probs=75.6

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC--
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD--  100 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~--  100 (358)
                      +++ +.+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.  +  +.++.|++|.+.+.+.++.....  
T Consensus         6 p~~~~~~~~g~~~~l~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~~~~~~~~~~~~~~   81 (136)
T 1zzo_A            6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP--E--VTFVGVAGLDQVPAMQEFVNKYPVK   81 (136)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEECSSCHHHHHHHHHHTTCT
T ss_pred             CCcccccCCCCEeeHHHhCCCeEEEEEEcCCChhHHHHHHHHHHHHHHcC--C--eEEEEEeCCCCHHHHHHHHHHcCCC
Confidence            344 7888999 99999999999999999999999999999999999886  3  89999999988877777765532  


Q ss_pred             -CcccccccceeeeccccCCCCc
Q 018266          101 -GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 -~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       ..++.+....+++.|++.++|+
T Consensus        82 ~~~~~~d~~~~~~~~~~i~~~P~  104 (136)
T 1zzo_A           82 TFTQLADTDGSVWANFGVTQQPA  104 (136)
T ss_dssp             TSEEEECTTCHHHHHTTCCSSSE
T ss_pred             ceEEEEcCCcHHHHHcCCCCCce
Confidence             2333444456677777777774

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=99.43  E-value=3.8e-13  Score=112.60  Aligned_cols=76  Identities=16%  Similarity=0.168  Sum_probs=64.5

Q ss_pred             ecccccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------C
Q 018266           18 TVLASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------D   88 (358)
Q Consensus        18 ~~l~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~   88 (358)
                      +.....-++| |.+.+|+ +++++++||+|+|+|||+||++|+..+|.|.++++++++.+  ++|+.|++|.       +
T Consensus        12 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d~~~~~~~d~   89 (180)
T 3kij_A           12 KPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSH--FSVLAFPCNQFGESEPRP   89 (180)
T ss_dssp             CCCCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHTTTS--EEEEEEECCCSTTCCCSC
T ss_pred             cCCcCcccceEEecCCCCEecHHHcCCCEEEEEEEecCCCCcHHHHHHHHHHHHHhccCC--eEEEEEECCccccCCCCC
Confidence            3444444566 9999999 99999999999999999999999999999999999998877  9999999874       4


Q ss_pred             hhHHHHH
Q 018266           89 ENGFEEH   95 (358)
Q Consensus        89 ~~~~~~~   95 (358)
                      .+...++
T Consensus        90 ~~~~~~~   96 (180)
T 3kij_A           90 SKEVESF   96 (180)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555555

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.43  E-value=6.4e-13  Score=101.06  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=61.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|+
T Consensus        20 ~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~-----~~~~~~vd~~~~-----------------------~~~~~~~~   71 (107)
T 1gh2_A           20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQC-----------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCChhhHHHHHHHHHHHHHCC-----CcEEEEEECccC-----------------------HHHHHhcC
Confidence            57899999999999999999999999999873     478888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++||++++ ++|+++.+
T Consensus        72 v~~~Pt~~~~-~~G~~~~~   89 (107)
T 1gh2_A           72 ISATPTFQFF-RNKVRIDQ   89 (107)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCeEEEE
Confidence            9999999999 88988765

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.43  E-value=2.7e-13  Score=111.37  Aligned_cols=93  Identities=24%  Similarity=0.263  Sum_probs=73.4

Q ss_pred             Cccc-ccCCCCc-eecccCCCCE-EEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKT-ICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS   99 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~-vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (358)
                      .++| +.+.+|+ +++++++||. ++|.|| ++||++|+..+|.|.++++++++.+  ++++.|++| +.+..+++....
T Consensus         8 ~P~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d-~~~~~~~~~~~~   84 (161)
T 3drn_A            8 APLFEGIADNGEKISLSDYIGKHNIVLYFYPKDDTPGSTREASAFRDNWDLLKDYD--VVVIGVSSD-DINSHKRFKEKY   84 (161)
T ss_dssp             CCCCEEEETTSCEEEGGGTTTTSEEEEEECSCTTCHHHHHHHHHHHHTHHHHHTTC--EEEEEEESC-CHHHHHHHHHHT
T ss_pred             CCCeEeecCCCCEEEHHHhcCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEeCC-CHHHHHHHHHHh
Confidence            3456 8899999 9999999997 999999 9999999999999999999999877  999999998 456666665553


Q ss_pred             CC--cccccccceeeeccccCC
Q 018266          100 DG--TLIEEDLIGLIEDYGADA  119 (358)
Q Consensus       100 ~~--~~~~~~~~~l~~~~gi~~  119 (358)
                      ..  .++.+....+.+.||+.+
T Consensus        85 ~~~~~~~~d~~~~~~~~~~v~~  106 (161)
T 3drn_A           85 KLPFILVSDPDKKIRELYGAKG  106 (161)
T ss_dssp             TCCSEEEECTTSHHHHHTTCCC
T ss_pred             CCCceEEECCcHHHHHHcCCCC
Confidence            22  333444445666666654

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.2e-13  Score=108.68  Aligned_cols=74  Identities=20%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      .-++++++|+||++||++|+.+.|.|.+++++++.   .++.++.|+++..                       ..++++
T Consensus        23 ~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~-----------------------~~~~~~   76 (137)
T 2dj0_A           23 RDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNC---TGLNFGKVDVGRY-----------------------TDVSTR   76 (137)
T ss_dssp             HSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCS---SSCEEEECCTTTC-----------------------HHHHHH
T ss_pred             cCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CCeEEEEEeCccC-----------------------HHHHHH
Confidence            33557999999999999999999999999999973   4677777777654                       578899


Q ss_pred             cCCC------ceeeEEEECCCCcEEec
Q 018266          247 FNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       247 ~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      |+|.      ++||++++ ++|+++.+
T Consensus        77 ~~v~~~~~~~~~Pt~~~~-~~G~~~~~  102 (137)
T 2dj0_A           77 YKVSTSPLTKQLPTLILF-QGGKEAMR  102 (137)
T ss_dssp             TTCCCCSSSSCSSEEEEE-SSSSEEEE
T ss_pred             ccCcccCCcCCCCEEEEE-ECCEEEEE
Confidence            9998      99999999 88998865

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=6.5e-13  Score=105.08  Aligned_cols=75  Identities=19%  Similarity=0.399  Sum_probs=62.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++.....++.++.|+++..                       ..++++|+
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----------------------~~l~~~~~   80 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVN-----------------------QVLASRYG   80 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTC-----------------------CHHHHHHT
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCC-----------------------HHHHHhCC
Confidence            4689999999999999999999999999998621224578888887754                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++++ |+++.+
T Consensus        81 v~~~Pt~~~~~~-g~~~~~   98 (133)
T 1x5d_A           81 IRGFPTIKIFQK-GESPVD   98 (133)
T ss_dssp             CCSSSEEEEEET-TEEEEE
T ss_pred             CCeeCeEEEEeC-CCceEE
Confidence            999999999966 776655

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.43  E-value=7.7e-13  Score=99.98  Aligned_cols=71  Identities=23%  Similarity=0.491  Sum_probs=62.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.+.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   69 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDEA-----------------------PGIATQYN   69 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhc----CceEEEEEcCcch-----------------------HHHHHhCC
Confidence            46899999999999999999999999999987    4588888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~g~~~~~   87 (105)
T 1fb6_A           70 IRSIPTVLFF-KNGERKES   87 (105)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCeEEEE
Confidence            9999999888 79998876

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=99.43  E-value=2.5e-13  Score=117.38  Aligned_cols=98  Identities=17%  Similarity=0.272  Sum_probs=75.8

Q ss_pred             cCccc-ccCCCCc-eecccCCCC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec-------CChhHH
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD-------HDENGF   92 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d-------~~~~~~   92 (358)
                      ..++| |.+.+|+ +++++++|| +|+|+||++||++|+..+|.|.++++++++.+  ++++.|++|       .+.+..
T Consensus        37 ~aP~f~l~~~~G~~v~l~~~~gk~~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~~~~~~~d~~~~~  114 (218)
T 3u5r_E           37 RAADFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQG--LAVVAINSNDAQAFPEETLERV  114 (218)
T ss_dssp             BCCCCCEECTTCCEECGGGGTTCSEEEEEECCSSCHHHHTTHHHHHHHHHHHTTTT--EEEEEEECSCTTTCGGGSHHHH
T ss_pred             cCCCcEeECCCCCEEeHHHhCCCCeEEEEEECCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCcccccccCCHHHH
Confidence            33466 9999999 999999999 59999999999999999999999999998877  999999996       455566


Q ss_pred             HHHHhhCCC--cccccccceeeeccccCCCCc
Q 018266           93 EEHFKSSDG--TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        93 ~~~~~~~~~--~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      +++......  .++.+....+++.|++...|+
T Consensus       115 ~~~~~~~~~~~~~l~D~~~~~~~~~~v~~~P~  146 (218)
T 3u5r_E          115 GAEVKAYGYGFPYLKDASQSVAKAYGAACTPD  146 (218)
T ss_dssp             HHHHHHHTCCSCEEECTTCHHHHHHTCCEESE
T ss_pred             HHHHHHhCCCccEEECCccHHHHHcCCCCCCe
Confidence            666554222  334444455666666666653

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=99.43  E-value=2.9e-13  Score=111.37  Aligned_cols=93  Identities=24%  Similarity=0.495  Sum_probs=75.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec----------------
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD----------------   86 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d----------------   86 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++|+.++|.|.++++++.  +  +.++.|++|                
T Consensus        18 p~~~l~~~~g~~~~l~~~~gk~~lv~F~~~~C~~C~~~~~~l~~l~~~~~--~--v~vv~i~~d~~~~~~~~~~~~~~~~   93 (165)
T 3ha9_A           18 ASFSLTTIDGEVISLNNVGGDVVILWFMAAWCPSCVYMADLLDRLTEKYR--E--ISVIAIDFWTAEALKALGLNKPGYP   93 (165)
T ss_dssp             HCCCEEBTTSCEECGGGCCSSEEEEEEECTTCTTHHHHHHHHHHHHHHCT--T--EEEEEEECCSHHHHHHHTCCSTTSC
T ss_pred             CCCEeecCCCCEeeHHHhCCCEEEEEEECCCCcchhhhHHHHHHHHHHcC--C--cEEEEEEecccccccccccccccCC
Confidence            355 8889999 99999999999999999999999999999999999987  3  999999998                


Q ss_pred             --CChhHHHHHHhhC---CCcccccccceeeeccccCCCCc
Q 018266           87 --HDENGFEEHFKSS---DGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        87 --~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                        .+.+.++++....   ...++.+ ...+++.|++.++|+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~v~~~P~  133 (165)
T 3ha9_A           94 PPDTPEMFRKFIANYGDPSWIMVMD-DGSLVEKFNVRSIDY  133 (165)
T ss_dssp             CCCCHHHHHHHHHHHSCTTSEEEEC-CSHHHHHTTCCSSSE
T ss_pred             CCCCHHHHHHHHHHcCCCCeeEEeC-hHHHHHHhCCCCceE
Confidence              6777777776652   3333444 556777788777774

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.42  E-value=8.8e-13  Score=99.83  Aligned_cols=72  Identities=28%  Similarity=0.610  Sum_probs=63.3

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++++++|+||++||++|+.+.|.+.+++++++    .++.++.|++|..                       ..++++|
T Consensus        18 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~   70 (106)
T 1xwb_A           18 ASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDEC-----------------------EDIAMEY   70 (106)
T ss_dssp             HTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhC----CCeEEEEEeccch-----------------------HHHHHHc
Confidence            468999999999999999999999999999886    5688888888754                       5789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++|+++++ ++|+++.+
T Consensus        71 ~v~~~Pt~~~~-~~G~~~~~   89 (106)
T 1xwb_A           71 NISSMPTFVFL-KNGVKVEE   89 (106)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCCcccEEEEE-cCCcEEEE
Confidence            99999998888 78988766

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.42  E-value=2.2e-13  Score=116.98  Aligned_cols=83  Identities=18%  Similarity=0.346  Sum_probs=69.5

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      +++++.+......+++++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                   
T Consensus       101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~~~~-------------------  157 (210)
T 3apq_A          101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVD----GLLRIGAVNCGDD-------------------  157 (210)
T ss_dssp             ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTB----TTBEEEEEETTTC-------------------
T ss_pred             EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhc----CceEEEEEECCcc-------------------
Confidence            45555554444568999999999999999999999999999986    5588888888764                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                          ..+++.|+|.++||++++ ++|+++.+
T Consensus       158 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~  183 (210)
T 3apq_A          158 ----RMLCRMKGVNSYPSLFIF-RSGMAAVK  183 (210)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-CTTSCCEE
T ss_pred             ----HHHHHHcCCCcCCeEEEE-ECCCceeE
Confidence                578999999999999999 89987655

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.42  E-value=2.3e-13  Score=108.16  Aligned_cols=74  Identities=24%  Similarity=0.452  Sum_probs=58.1

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +++.+||+++|+||++||++|+.+.|.|.++++++      ++.++.|.+|..                       ..++
T Consensus        35 l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~------~v~~~~vd~~~~-----------------------~~l~   85 (133)
T 3cxg_A           35 FSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY------YVTLVDIDVDIH-----------------------PKLN   85 (133)
T ss_dssp             HTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE------ECEEEEEETTTC-----------------------HHHH
T ss_pred             HHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc------CEEEEEEeccch-----------------------HHHH
Confidence            44556899999999999999999999998876554      256666666643                       6789


Q ss_pred             HHcCCCceeeEEEE-CCCCc--EEec
Q 018266          245 RIFNIKGIPALVLI-GPDGK--TIST  267 (358)
Q Consensus       245 ~~~~v~~~P~~~li-d~~G~--v~~~  267 (358)
                      ++|+|.++|+++++ +++|+  ++.+
T Consensus        86 ~~~~v~~~Pt~~~~~~~~g~g~~~~~  111 (133)
T 3cxg_A           86 DQHNIKALPTFEFYFNLNNEWVLVHT  111 (133)
T ss_dssp             HHTTCCSSSEEEEEEEETTEEEEEEE
T ss_pred             HhcCCCCCCEEEEEEecCCCeEEEEE
Confidence            99999999999999 44665  7766

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.41  E-value=8.5e-13  Score=100.80  Aligned_cols=73  Identities=21%  Similarity=0.472  Sum_probs=62.0

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.+.++++++.. ...++.++.|+++..                       ..++++|+|
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~~vd~~~~-----------------------~~l~~~~~v   76 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFP-GLAGVKIAEVDCTAE-----------------------RNICSKYSV   76 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCC-C-CCEEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhc-cCCceEEEEEecccc-----------------------HhHHHhcCC
Confidence            78999999999999999999999999888763 224678888887754                       578999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|+++++ ++|+++.+
T Consensus        77 ~~~Pt~~~~-~~g~~~~~   93 (111)
T 3uvt_A           77 RGYPTLLLF-RGGKKVSE   93 (111)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             CcccEEEEE-eCCcEEEe
Confidence            999999999 88888765

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.41  E-value=9.9e-13  Score=107.03  Aligned_cols=70  Identities=19%  Similarity=0.429  Sum_probs=62.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                       ..++++|+
T Consensus        31 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~~~~-----------------------~~l~~~~~   82 (153)
T 2wz9_A           31 AKSLLVVHFWAPWAPQCAQMNEVMAELAKELP-----QVSFVKLEAEGV-----------------------PEVSEKYE   82 (153)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC-----CeEEEEEECCCC-----------------------HHHHHHcC
Confidence            48999999999999999999999999998873     478888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|++++++ +|+++.+
T Consensus        83 v~~~Pt~~~~~-~G~~~~~  100 (153)
T 2wz9_A           83 ISSVPTFLFFK-NSQKIDR  100 (153)
T ss_dssp             CCSSSEEEEEE-TTEEEEE
T ss_pred             CCCCCEEEEEE-CCEEEEE
Confidence            99999999997 9998876

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.41  E-value=5.7e-13  Score=103.59  Aligned_cols=71  Identities=28%  Similarity=0.566  Sum_probs=63.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~~-----------------------~~~~~~~~   81 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERA----TDLTVAKLDVDTN-----------------------PETARNFQ   81 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence            47899999999999999999999999999986    4688888988864                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        82 i~~~Pt~~~~-~~g~~~~~   99 (121)
T 2i1u_A           82 VVSIPTLILF-KDGQPVKR   99 (121)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcCCEEEEE-ECCEEEEE
Confidence            9999999999 69988766

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=99.41  E-value=6.5e-15  Score=121.55  Aligned_cols=81  Identities=16%  Similarity=0.353  Sum_probs=62.7

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  240 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      +.+.....++|+|+|+||++||++|+.+.|.|.++.+.+.    .++.++.|++|.+.                      
T Consensus        37 ~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~----~~~~~~~v~~d~~~----------------------   90 (164)
T 1sen_A           37 DGKKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISE----LSHNFVMVNLEDEE----------------------   90 (164)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHH----HHTTSEEEEEEGGG----------------------
T ss_pred             HHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhh----cCCeEEEEEecCCc----------------------
Confidence            3455555678999999999999999999999999766654    34567778777542                      


Q ss_pred             HHHHHHcCC--CceeeEEEECCCCcEEec
Q 018266          241 QDLCRIFNI--KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       241 ~~l~~~~~v--~~~P~~~lid~~G~v~~~  267 (358)
                      ..+...|++  .++|+++++|++|+++.+
T Consensus        91 ~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~  119 (164)
T 1sen_A           91 EPKDEDFSPDGGYIPRILFLDPSGKVHPE  119 (164)
T ss_dssp             SCSCGGGCTTCSCSSEEEEECTTSCBCTT
T ss_pred             hHHHHHhcccCCcCCeEEEECCCCCEEEE
Confidence            114456777  669999999999999876

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=99.41  E-value=1.5e-13  Score=104.44  Aligned_cols=63  Identities=27%  Similarity=0.578  Sum_probs=50.9

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG  116 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  116 (358)
                      +++..+|+|+|+|||+||+||+.+.|.|+++++.+.+    +.++.|++|...                    +++++|+
T Consensus        15 l~~~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~~--------------------~l~~~~~   70 (105)
T 3zzx_A           15 LNEAGNKLVVIDFYATWCGPCKMIAPKLEELSQSMSD----VVFLKVDVDECE--------------------DIAQDNQ   70 (105)
T ss_dssp             HHHTTTSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEETTTCH--------------------HHHHHTT
T ss_pred             HHhcCCCEEEEEEECCCCCCccCCCcchhhhhhccCC----eEEEEEecccCH--------------------HHHHHcC
Confidence            4445689999999999999999999999999987743    566666666544                    5788899


Q ss_pred             cCCCCcc
Q 018266          117 ADAYPFT  123 (358)
Q Consensus       117 i~~~P~~  123 (358)
                      |+++|+.
T Consensus        71 V~~~PT~   77 (105)
T 3zzx_A           71 IACMPTF   77 (105)
T ss_dssp             CCBSSEE
T ss_pred             CCeecEE
Confidence            9999963

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=99.41  E-value=2.2e-13  Score=119.24  Aligned_cols=85  Identities=20%  Similarity=0.397  Sum_probs=68.4

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+.....++++++|+||++||++|+.+.|.|.+++++++. .+.++.++.|.++..                   
T Consensus        19 ~l~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~~~~vd~~~~-------------------   78 (241)
T 3idv_A           19 VLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKD-KDPPIPVAKIDATSA-------------------   78 (241)
T ss_dssp             EECTTTHHHHHTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHT-SSSCCCEEEEETTTC-------------------
T ss_pred             EecccCHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhh-cCCceEEEEEeccCC-------------------
Confidence            445555554445689999999999999999999999999999985 223478888887754                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                          ..++++|+|.++||++++ ++|+++.
T Consensus        79 ----~~l~~~~~v~~~Pt~~~~-~~g~~~~  103 (241)
T 3idv_A           79 ----SVLASRFDVSGYPTIKIL-KKGQAVD  103 (241)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEE
T ss_pred             ----HHHHHhcCCCcCCEEEEE-cCCCccc
Confidence                689999999999999999 4676653

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.41  E-value=1.1e-12  Score=101.13  Aligned_cols=70  Identities=23%  Similarity=0.524  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++|+++|+||++||++|+.+.|.|.+++++++    . +.++.|++|..                       ..++++|+
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~----~-v~~~~vd~~~~-----------------------~~l~~~~~   80 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYP----D-VRFVKCDVDES-----------------------PDIAKECE   80 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-CEEEEEECCCC-----------------------HHHHHHCC
Confidence            47899999999999999999999999999885    3 88888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        81 v~~~Pt~~~~-~~G~~~~~   98 (114)
T 2oe3_A           81 VTAMPTFVLG-KDGQLIGK   98 (114)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCeEEEE
Confidence            9999999888 89998866

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.41  E-value=8.8e-13  Score=103.54  Aligned_cols=70  Identities=17%  Similarity=0.472  Sum_probs=62.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++     ++.++.|++|..                       ..++++|+
T Consensus        36 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~~   87 (125)
T 1r26_A           36 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADNN-----------------------SEIVSKCR   87 (125)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC-----CCEEEEEECCCC-----------------------HHHHHHcC
Confidence            67899999999999999999999999998874     488888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++|+++++ ++|+++.+
T Consensus        88 v~~~Pt~~i~-~~G~~~~~  105 (125)
T 1r26_A           88 VLQLPTFIIA-RSGKMLGH  105 (125)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCeEEEE
Confidence            9999998888 89998865

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=99.40  E-value=6.4e-13  Score=101.77  Aligned_cols=70  Identities=20%  Similarity=0.402  Sum_probs=60.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++.+++.     ++.++.|+++..                       ..++++|+
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~v~~~~vd~~~~-----------------------~~l~~~~~   69 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP-----QVAISSVDSEAR-----------------------PELMKELG   69 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT-----TSCEEEEEGGGC-----------------------HHHHHHTT
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC-----CcEEEEEcCcCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999887763     467888877653                       67899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        70 v~~~Pt~~~~-~~G~~v~~   87 (110)
T 2l6c_A           70 FERVPTLVFI-RDGKVAKV   87 (110)
T ss_dssp             CCSSCEEEEE-ESSSEEEE
T ss_pred             CcccCEEEEE-ECCEEEEE
Confidence            9999999999 99998876

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.40  E-value=3.5e-13  Score=104.50  Aligned_cols=89  Identities=11%  Similarity=0.121  Sum_probs=67.0

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++|+|+||++||++|+.+.|.|.+++++|.     ++.++-|++|..                          +++|+|
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~-----~v~f~kvd~d~~--------------------------~~~~~v   71 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFP-----ETKFVKAIVNSC--------------------------IQHYHD   71 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCT-----TSEEEEEEGGGT--------------------------STTCCG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCC-----CCEEEEEEhHHh--------------------------HHHCCC
Confidence            4599999999999999999999999999985     366776766531                          368999


Q ss_pred             CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHH
Q 018266          250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK  297 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~  297 (358)
                      +++||++++ ++|+.+.+       ..|........-..++|+..|.+
T Consensus        72 ~~~PT~~~f-k~G~~v~~-------~~G~~~~gg~~~~~~~le~~L~~  111 (118)
T 3evi_A           72 NCLPTIFVY-KNGQIEAK-------FIGIIECGGINLKLEELEWKLAE  111 (118)
T ss_dssp             GGCSEEEEE-ETTEEEEE-------EESTTTTTCSSCCHHHHHHHHHT
T ss_pred             CCCCEEEEE-ECCEEEEE-------EeChhhhCCCCCCHHHHHHHHHH
Confidence            999999999 88888877       45554433223335566555653

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.40  E-value=1.4e-12  Score=100.12  Aligned_cols=70  Identities=20%  Similarity=0.412  Sum_probs=61.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                       ..++++|+
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~-----~v~~~~vd~~~~-----------------------~~~~~~~~   76 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT-----KMVFIKVDVDEV-----------------------SEVTEKEN   76 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTT-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC-----CCEEEEEECCCC-----------------------HHHHHHcC
Confidence            57999999999999999999999999998874     488888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        77 v~~~Pt~~~~-~~G~~~~~   94 (112)
T 1syr_A           77 ITSMPTFKVY-KNGSSVDT   94 (112)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCcEEEE
Confidence            9999998888 68988766

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=99.40  E-value=4.2e-13  Score=109.69  Aligned_cols=96  Identities=20%  Similarity=0.342  Sum_probs=70.1

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .++| +.+.+|+ +++++++||+++|+||++||++|+.++|.|.++++++.+.+  +.++.|++|.+...+.+... ...
T Consensus        21 ~p~f~l~~~~g~~~~l~~~~gk~vll~F~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~v~~d~~~~~~~~~~~-~~~   97 (158)
T 3hdc_A           21 APNFKLPTLSGENKSLAQYRGKIVLVNFWASWCPYCRDEMPSMDRLVKSFPKGD--LVVLAVNVEKRFPEKYRRAP-VSF   97 (158)
T ss_dssp             CCCCEEECTTSCEEESGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHSSTTS--EEEEEEECSSSCCGGGGGCC-CSC
T ss_pred             CCCceeEcCCCCEEehHHhCCCEEEEEEECCcCHHHHHHHHHHHHHHHHcccCC--eEEEEEeCCHHHHHHHHHcC-CCc
Confidence            3455 8899999 99999999999999999999999999999999999998655  88999988864322111110 111


Q ss_pred             cccccccceeeeccccCCCCc
Q 018266          102 TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 ~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .++.+....+.+.|++.++|+
T Consensus        98 ~~~~d~~~~~~~~~~v~~~P~  118 (158)
T 3hdc_A           98 NFLSDATGQVQQRYGANRLPD  118 (158)
T ss_dssp             EEEECTTSHHHHHTTCCSSSE
T ss_pred             eEEECchHHHHHHhCCCCcce
Confidence            233333445666666666664

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.40  E-value=4.2e-13  Score=106.30  Aligned_cols=83  Identities=12%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      .++++.+..... .+++++|+||++||++|+.+.|.|.+++++++.  ..++.++.|.++..                  
T Consensus        11 ~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~~~vd~~~~------------------   70 (133)
T 2dj3_A           11 VVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKG--QKDLVIAKMDATAN------------------   70 (133)
T ss_dssp             ECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTT--SSSEEEEEECTTTS------------------
T ss_pred             EEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcC--CCCEEEEEecCCcC------------------
Confidence            455555544333 489999999999999999999999999999873  23566666666543                  


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                           ..++++|+|.++||+++++++|++
T Consensus        71 -----~~~~~~~~v~~~Pt~~~~~~g~~~   94 (133)
T 2dj3_A           71 -----DITNDQYKVEGFPTIYFAPSGDKK   94 (133)
T ss_dssp             -----CCCCSSCCCSSSSEEEEECTTCTT
T ss_pred             -----HHHHhhcCCCcCCEEEEEeCCCcc
Confidence                 345568999999999999776653

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=99.40  E-value=1.9e-12  Score=103.55  Aligned_cols=83  Identities=25%  Similarity=0.457  Sum_probs=61.7

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++.+......++.++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                   
T Consensus        37 ~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~----~~v~~~~vd~~~~-------------------   93 (140)
T 1v98_A           37 EADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHA----GRLKVVKVNVDEH-------------------   93 (140)
T ss_dssp             ------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-------------------
T ss_pred             cCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHcc----CceEEEEEECCCC-------------------
Confidence            34444444332233339999999999999999999999999987    4588888888764                   


Q ss_pred             chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          237 DRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       237 ~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                          ..+++.|++.++|+++++ ++|+++.+
T Consensus        94 ----~~l~~~~~v~~~Pt~~~~-~~G~~~~~  119 (140)
T 1v98_A           94 ----PGLAARYGVRSVPTLVLF-RRGAPVAT  119 (140)
T ss_dssp             ----HHHHHHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             ----HHHHHHCCCCccCEEEEE-eCCcEEEE
Confidence                578999999999999999 89998865

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.40  E-value=1.2e-12  Score=102.42  Aligned_cols=72  Identities=14%  Similarity=0.422  Sum_probs=61.5

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .++|+++|+||++||++|+.+.|.+.+++++++     ++.++.|+++..                      ...++++|
T Consensus        35 ~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~-----~~~~~~vd~~~~----------------------~~~~~~~~   87 (124)
T 1faa_A           35 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKEL   87 (124)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHH
T ss_pred             cCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCC-----CCEEEEEecCcc----------------------hHHHHHHc
Confidence            468999999999999999999999999998875     377888877632                      36789999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++||++++ ++|+++.+
T Consensus        88 ~v~~~Pt~~~~-~~G~~~~~  106 (124)
T 1faa_A           88 GIRVVPTFKIL-KENSVVGE  106 (124)
T ss_dssp             CCSSSSEEEEE-ETTEEEEE
T ss_pred             CCCeeeEEEEE-eCCcEEEE
Confidence            99999997766 89998876

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.40  E-value=9.6e-13  Score=118.45  Aligned_cols=71  Identities=18%  Similarity=0.367  Sum_probs=64.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++|+|+|+||++||++|+.+.|.|.+++++++    +++.++.|++|..                       ..+++.|+
T Consensus        25 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   77 (287)
T 3qou_A           25 MTTPVLFYFWSERSQHCLQLTPILESLAAQYN----GQFILAKLDCDAE-----------------------QMIAAQFG   77 (287)
T ss_dssp             TTSCEEEEEECTTCTTTTTTHHHHHHHHHHHT----SSSEEEEEETTTC-----------------------HHHHHTTT
T ss_pred             CCCeEEEEEECCCChHHHHHHHHHHHHHHHcC----CCeEEEEEeCccC-----------------------HHHHHHcC
Confidence            48999999999999999999999999999997    5688988988864                       58999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus        78 v~~~Pt~~~~-~~G~~~~~   95 (287)
T 3qou_A           78 LRAIPTVYLF-QNGQPVDG   95 (287)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCCCCeEEEE-ECCEEEEE
Confidence            9999999999 79988865

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.40  E-value=6.4e-13  Score=103.54  Aligned_cols=69  Identities=20%  Similarity=0.339  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    .++.++.|+++..                       ..++++|+
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   72 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIK----GKVRAGKVDCQAY-----------------------PQTCQKAG   72 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc----CCeEEEEEeCcCC-----------------------HHHHHHcC
Confidence            46899999999999999999999999999987    4688888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++|++++++++|++
T Consensus        73 v~~~Pt~~~~~~~~~~   88 (122)
T 3aps_A           73 IKAYPSVKLYQYERAK   88 (122)
T ss_dssp             CCSSSEEEEEEEEGGG
T ss_pred             CCccceEEEEeCCCcc
Confidence            9999999999776663

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=99.40  E-value=7.1e-13  Score=103.39  Aligned_cols=72  Identities=21%  Similarity=0.475  Sum_probs=63.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++.   .++.++.|++|..                       ..++++|+
T Consensus        32 ~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~---~~v~~~~vd~d~~-----------------------~~~~~~~~   85 (121)
T 2j23_A           32 GDKVVVIDFWATWCGPCKMIGPVFEKISDTPAG---DKVGFYKVDVDEQ-----------------------SQIAQEVG   85 (121)
T ss_dssp             SSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHH---HHSEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcC---CcEEEEEEECcCC-----------------------HHHHHHcC
Confidence            578999999999999999999999999988874   3588999988864                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        86 v~~~Pt~~~~-~~G~~~~~  103 (121)
T 2j23_A           86 IRAMPTFVFF-KNGQKIDT  103 (121)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-ECCeEEee
Confidence            9999999999 69998776

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.40  E-value=1.5e-12  Score=101.40  Aligned_cols=70  Identities=20%  Similarity=0.518  Sum_probs=62.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++    + +.++.|++|..                       ..++++|+
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~-~~~~~vd~~~~-----------------------~~~~~~~~   84 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFP----N-AVFLKVDVDEL-----------------------KPIAEQFS   84 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----T-SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----C-cEEEEEECCCC-----------------------HHHHHHcC
Confidence            57899999999999999999999999999885    3 88888888764                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        85 v~~~Pt~~~~-~~G~~~~~  102 (122)
T 2vlu_A           85 VEAMPTFLFM-KEGDVKDR  102 (122)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999888 89998865

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=99.39  E-value=6.3e-13  Score=105.16  Aligned_cols=95  Identities=27%  Similarity=0.513  Sum_probs=70.6

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe-----cCChhHHHHHHh
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF-----DHDENGFEEHFK   97 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~-----d~~~~~~~~~~~   97 (358)
                      ++| +.+.+|+ +++++++||+++|+||++||++|+.++|.+.++++++..   .+.++.|+.     +.+.+.+.++..
T Consensus         3 p~f~l~~~~g~~~~l~~~~gk~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~~~~~~   79 (138)
T 4evm_A            3 ADFELMGVDGKTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAKEAGD---DYVVLTVVSPGHKGEQSEADFKNWYK   79 (138)
T ss_dssp             CCCEEEBTTSCEEEGGGGTTSEEEEEECCTTCHHHHHHHHHHHHHHHTCTT---TEEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred             CcceeECCCCCEEEHHHhCCCEEEEEEEcCcCHHHHHHHHHHHHHHHHhCC---CcEEEEEEcCCCCchhhHHHHHHHHh
Confidence            345 8889999 999999999999999999999999999999999998433   388888853     334556666655


Q ss_pred             hCCC---cccccccceeeeccccCCCCc
Q 018266           98 SSDG---TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        98 ~~~~---~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ....   .++.+....+++.|++.++|+
T Consensus        80 ~~~~~~~~~~~d~~~~~~~~~~v~~~P~  107 (138)
T 4evm_A           80 GLDYKNLPVLVDPSGKLLETYGVRSYPT  107 (138)
T ss_dssp             TCCCTTCCEEECTTCHHHHHTTCCSSSE
T ss_pred             hcCCCCeeEEECcchHHHHHcCcccCCe
Confidence            4322   333444456667777776664

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.39  E-value=5.8e-13  Score=109.82  Aligned_cols=115  Identities=12%  Similarity=0.207  Sum_probs=92.2

Q ss_pred             hhhccCCceecCCC--ceeeecc-cCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceE-EEEEeCCCCH--H
Q 018266          147 LAIEGRDYVLSRDH--RKITVSE-LAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFE-VVLVSTDRDH--K  219 (358)
Q Consensus       147 ~~~~~p~f~l~~~g--~~~~l~~-~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~-vv~v~~d~~~--~  219 (358)
                      +|.++|+|++..+|  +.+++++ ++||+++|+|| +.|||.|..+++.+.+.++++++   .+++ |++|++|...  .
T Consensus        16 vGd~aPdf~l~~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~---~gv~~VigIS~D~~~~~~   92 (171)
T 2xhf_A           16 VGDIIPDVLVYEDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKE---EGYHTIACIAVNDPFVMA   92 (171)
T ss_dssp             TTCBCCCCEEECSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHH---TTCCEEEEEESSCHHHHH
T ss_pred             CcCCCCCeEEecCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHH---CCCCEEEEEeCCCHHHHH
Confidence            58999999994444  7999999 49998888886 57999999999999999999987   7885 9999999642  3


Q ss_pred             HHHHhhhcCCccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEec
Q 018266          220 EFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~  267 (358)
                      +|.+.....  ..+|+..|....+++.||+.           ....++||| +|+|++.
T Consensus        93 ~w~~~~~~~--~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~  148 (171)
T 2xhf_A           93 AWGKTVDPE--HKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSV  148 (171)
T ss_dssp             HHHHHHCTT--CCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEE
T ss_pred             HHHHhcCCC--CCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEE
Confidence            444443311  26888888899999999973           246788998 9999987

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.39  E-value=1.1e-12  Score=101.88  Aligned_cols=71  Identities=23%  Similarity=0.439  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++++++     .++.++.|++|..                       ..++++|+
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-----~~v~~~~vd~~~~-----------------------~~~~~~~~   73 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-----KDVTFIKVDVDKN-----------------------GNAADAYG   73 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-----CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence            4789999999999999999999999998887     3478888888764                       57899999


Q ss_pred             CCceeeEEEECC---CCcEEec
Q 018266          249 IKGIPALVLIGP---DGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~---~G~v~~~  267 (358)
                      |.++|++++++.   +|+++.+
T Consensus        74 i~~~Pt~~~~~~~~~~G~~~~~   95 (118)
T 2f51_A           74 VSSIPALFFVKKEGNEIKTLDQ   95 (118)
T ss_dssp             CCSSSEEEEEEEETTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCcceEEEe
Confidence            999999999955   3777766

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=99.38  E-value=3e-13  Score=108.37  Aligned_cols=73  Identities=23%  Similarity=0.491  Sum_probs=63.3

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEE  106 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (358)
                      +.+.+|. ++++.++||+++|+||++||++|+.+.|.|.++++.+.+.   +.++.|++|.+.                 
T Consensus        36 l~~~~~~~~~l~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~-----------------   95 (141)
T 3hxs_A           36 IADYENHSKEWKYLGDKPAIVDFYADWCGPCKMVAPILEELSKEYAGK---IYIYKVNVDKEP-----------------   95 (141)
T ss_dssp             TCCCSSCCCCCCCCCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------
T ss_pred             hhccccchhHHHHhCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCc---eEEEEEECCCCH-----------------
Confidence            7788888 9999999999999999999999999999999999998754   788888888765                 


Q ss_pred             ccceeeeccccCCCCcc
Q 018266          107 DLIGLIEDYGADAYPFT  123 (358)
Q Consensus       107 ~~~~l~~~~gi~~~P~~  123 (358)
                         .++++|+|.++|+.
T Consensus        96 ---~~~~~~~v~~~Pt~  109 (141)
T 3hxs_A           96 ---ELARDFGIQSIPTI  109 (141)
T ss_dssp             ---HHHHHTTCCSSSEE
T ss_pred             ---HHHHHcCCCCcCEE
Confidence               46777888888853

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=99.38  E-value=6.3e-13  Score=106.82  Aligned_cols=91  Identities=19%  Similarity=0.289  Sum_probs=72.2

Q ss_pred             cCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-----ChhHHHHHHhhCCC-
Q 018266           29 LSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKSSDG-  101 (358)
Q Consensus        29 ~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~~-  101 (358)
                      .+.+|+ +++++++||+++|.||++||++|+.++|.+.++++++.+.   +.++.|++|.     +.+...++...... 
T Consensus        15 ~~~~g~~~~~~~~~gk~~lv~f~~~~C~~C~~~~~~l~~l~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   91 (148)
T 2b5x_A           15 AWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDIT   91 (148)
T ss_dssp             EEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCC
T ss_pred             ccccCcccchhhcCCCEEEEEEEcCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEEcCCCccccCHHHHHHHHHHcCCC
Confidence            567899 9999999999999999999999999999999999999765   8899999875     45566666555322 


Q ss_pred             -cccccccceeeeccccCCCCc
Q 018266          102 -TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 -~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       .++.+....+++.|++.++|+
T Consensus        92 ~~~~~d~~~~~~~~~~v~~~P~  113 (148)
T 2b5x_A           92 QPIFVDSDHALTDAFENEYVPA  113 (148)
T ss_dssp             SCEEECSSCHHHHHTCCCCSSE
T ss_pred             cceEECCchhHHHHhCCCCCCE
Confidence             334444556777788877774

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=99.38  E-value=3.9e-13  Score=105.26  Aligned_cols=71  Identities=30%  Similarity=0.577  Sum_probs=57.8

Q ss_pred             CCcEEEEEEeccCCc--------------ccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccc
Q 018266          169 AGKTIGLYFGAHWCP--------------PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  234 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~--------------~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  234 (358)
                      .+|+++|+||++||+              +|+.+.|.+.+++++++    .++.++.|++|..                 
T Consensus        20 ~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~----~~~~~~~vd~d~~-----------------   78 (123)
T 1oaz_A           20 ADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------   78 (123)
T ss_dssp             CSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-----------CEEEEEETTSC-----------------
T ss_pred             CCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------
Confidence            579999999999999              99999999999998886    4588888888864                 


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                            ..++++|+|.++|+++++ ++|+++.+
T Consensus        79 ------~~l~~~~~v~~~Pt~~~~-~~G~~~~~  104 (123)
T 1oaz_A           79 ------PGTAPKYGIRGIPTLLLF-KNGEVAAT  104 (123)
T ss_dssp             ------TTTGGGGTCCBSSEEEEE-ESSSEEEE
T ss_pred             ------HHHHHHcCCCccCEEEEE-ECCEEEEE
Confidence                  467889999999999999 99998866

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=99.37  E-value=7.8e-13  Score=104.19  Aligned_cols=75  Identities=19%  Similarity=0.428  Sum_probs=62.2

Q ss_pred             ccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc
Q 018266           26 EFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI  104 (358)
Q Consensus        26 ~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (358)
                      ..+...+++ ++....+||+++|+||++||++|+.+.|.+.++++++++.   +.++.|++|.+.               
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---v~~~~vd~d~~~---------------   86 (128)
T 3ul3_B           25 PRLQQNGSNIINGVNMKNTVIVLYFFAKWCQACTMQSTEMDKLQKYYGKR---IYLLKVDLDKNE---------------   86 (128)
T ss_dssp             -CCCCCCCSSSSBTTSCCSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGG---EEEEEEEGGGCH---------------
T ss_pred             CccccCCccHHHHHHccCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH---------------
Confidence            335566777 8888889999999999999999999999999999999754   888888888665               


Q ss_pred             ccccceeeeccccCCCCcc
Q 018266          105 EEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~~~~~~l~~~~gi~~~P~~  123 (358)
                           .++++|+|.++|+.
T Consensus        87 -----~l~~~~~v~~~Pt~  100 (128)
T 3ul3_B           87 -----SLARKFSVKSLPTI  100 (128)
T ss_dssp             -----HHHHHTTCCSSSEE
T ss_pred             -----HHHHHcCCCCcCEE
Confidence                 46777888888864

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=99.37  E-value=1.2e-12  Score=110.27  Aligned_cols=95  Identities=17%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------ChhHHHHH
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGFEEH   95 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~~~~~~~~   95 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++.+.   ++++.|++|.       +.+...++
T Consensus        14 p~f~l~~~~G~~~~l~~~~gk~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~---~~~v~v~~d~~~~~~~d~~~~~~~~   90 (188)
T 2cvb_A           14 IDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEKMAAF   90 (188)
T ss_dssp             CCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHHHHHH
T ss_pred             CCceeecCCCCEEeHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHhhcC---eEEEEEEcCccccccccCHHHHHHH
Confidence            455 8899999 9999999999999999999999999999999999998764   8999999963       44555555


Q ss_pred             HhhCC--CcccccccceeeeccccCCCCc
Q 018266           96 FKSSD--GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        96 ~~~~~--~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .....  ..++.+....+++.|++.++|+
T Consensus        91 ~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  119 (188)
T 2cvb_A           91 AEEHGIFFPYLLDETQEVAKAYRALRTPE  119 (188)
T ss_dssp             HHHHTCCSCEEECSSSHHHHHTTCCEESE
T ss_pred             HHHhCCCceEEECCcchHHHHcCCCCCCe
Confidence            54422  2334444456667777776664

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=99.37  E-value=1.2e-12  Score=108.49  Aligned_cols=61  Identities=20%  Similarity=0.346  Sum_probs=56.2

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ..++| +++.+|+ +++++++||+|+|.|||+||++|+ .+|.|.++++++++.+  ++++.|++|
T Consensus        11 ~~~~f~l~d~~G~~~~l~~~~Gk~vll~F~a~wC~~C~-~~~~l~~l~~~~~~~~--v~vv~vs~d   73 (171)
T 3cmi_A           11 EFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFTP-QYKELEALYKRYKDEG--FTIIGFPCN   73 (171)
T ss_dssp             GGGGCCCBBTTSCBCCGGGGTTCEEEEEEEESSSCCHH-HHHHHHHHHHHHGGGT--EEEEEEEEC
T ss_pred             heeeeEEEcCCCCEecHHHcCCCEEEEEEEecCCCcch-hHHHHHHHHHHhccCC--eEEEEEECc
Confidence            34566 8899999 999999999999999999999999 9999999999998876  999999986

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.37  E-value=1.6e-12  Score=108.53  Aligned_cols=117  Identities=14%  Similarity=0.141  Sum_probs=90.6

Q ss_pred             hhhccCCcee-c--C---------CC----ceeeecc-cCCcEEEEEEe-ccCCcccH-hhHHHHHHHHHHh-hcccCCc
Q 018266          147 LAIEGRDYVL-S--R---------DH----RKITVSE-LAGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNEL-KTTANHC  206 (358)
Q Consensus       147 ~~~~~p~f~l-~--~---------~g----~~~~l~~-~~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~-~~~~~~~  206 (358)
                      +|.++|+|++ +  .         +|    +.+++++ ++||+++|+|| +.|||.|. .+++.|.+.+.++ +.   .+
T Consensus         3 vGd~aPdf~l~~~~~~~~~~~~~~~G~~~~~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~---~g   79 (182)
T 1xiy_A            3 ENDLIPNVKVMIDVRNMNNISDTDGSPNDFTSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NN   79 (182)
T ss_dssp             TTCBCCCCEEEEEHHHHTC--------CCEEEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SC
T ss_pred             CCCCCCCeEEEcccccccccccccCCCccceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHh---CC
Confidence            5889999998 5  3         66    7899998 69988877765 68999999 9999999999999 86   78


Q ss_pred             eE-EEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEecC
Q 018266          207 FE-VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       207 ~~-vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~~  268 (358)
                      ++ |++|+.|.. ....+|...+....+|+..|....+++.||+.           ..+..+||| +|+|++..
T Consensus        80 ~~~V~gvS~D~~-~~~~~~~~~~~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~  151 (182)
T 1xiy_A           80 FDDIYCITNNDI-YVLKSWFKSMDIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMF  151 (182)
T ss_dssp             CSEEEEEESSCH-HHHHHHHHHTTCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEE
T ss_pred             CcEEEEEeCCCH-HHHHHHHHHcCCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEE
Confidence            84 999999953 33333444333225888888899999999973           246789998 99999873

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.37  E-value=1.6e-12  Score=109.20  Aligned_cols=62  Identities=32%  Similarity=0.565  Sum_probs=56.9

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++|+.++|.|.+++++++..+  ++++.|++|.+
T Consensus        41 p~f~l~~~~G~~~~l~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~~  104 (186)
T 1jfu_A           41 PDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTR  104 (186)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCS
T ss_pred             CCcEeEcCCCCEeeHHHcCCCEEEEEEEeCCCHhHHHHHHHHHHHHHHhccCC--cEEEEEECCCC
Confidence            455 8899999 99999999999999999999999999999999999998655  99999999864

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.37  E-value=1.3e-12  Score=101.33  Aligned_cols=75  Identities=24%  Similarity=0.446  Sum_probs=60.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.+++++++      ..++++.++...+                 .+....++++|+
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~------~~v~~~~~~~~~~-----------------~~~~~~~~~~~~   84 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETK------AHIYFINSEEPSQ-----------------LNDLQAFRSRYG   84 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHC------CCCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcC------CeEEEEECCCcCc-----------------HHHHHHHHHHcC
Confidence            46899999999999999999999999998875      2467777765321                 112457889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus        85 i~~~Pt~~~~-~~G~~~~~  102 (118)
T 1zma_A           85 IPTVPGFVHI-TDGQINVR  102 (118)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             CCCCCeEEEE-ECCEEEEE
Confidence            9999999999 68888765

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.37  E-value=2.9e-12  Score=96.60  Aligned_cols=71  Identities=27%  Similarity=0.603  Sum_probs=61.8

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..+++++|+||++||++|+.+.|.|.+++++++     ++.++.|+++..                       ..++++|
T Consensus        17 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~-----------------------~~~~~~~   68 (104)
T 2vim_A           17 NKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP-----EVEFAKVDVDQN-----------------------EEAAAKY   68 (104)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC-----CCEEEEEeccCC-----------------------HHHHHHc
Confidence            367999999999999999999999999988873     478888888764                       5788999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++.++|+++++ ++|+++.+
T Consensus        69 ~v~~~Pt~~~~-~~g~~~~~   87 (104)
T 2vim_A           69 SVTAMPTFVFI-KDGKEVDR   87 (104)
T ss_dssp             TCCSSSEEEEE-ETTEEEEE
T ss_pred             CCccccEEEEE-eCCcEEEE
Confidence            99999999888 58988776

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.37  E-value=7.6e-13  Score=102.93  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=62.1

Q ss_pred             cCCCceeeec-ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHHHHHHhhhcCCccccc
Q 018266          157 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  234 (358)
Q Consensus       157 ~~~g~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  234 (358)
                      .++++.+... ..++++++|+||++||++|+.+.|.|.+++++++.. ...++.++.|+++...                
T Consensus        11 ~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------   74 (121)
T 2djj_A           11 VVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND----------------   74 (121)
T ss_dssp             ECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC----------------
T ss_pred             EecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc----------------
Confidence            4555555433 236799999999999999999999999999999720 0126888888877531                


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                              +++  +|.++||+++++++|++
T Consensus        75 --------~~~--~v~~~Pt~~~~~~~~~~   94 (121)
T 2djj_A           75 --------VPD--EIQGFPTIKLYPAGAKG   94 (121)
T ss_dssp             --------CSS--CCSSSSEEEEECSSCTT
T ss_pred             --------ccc--ccCcCCeEEEEeCcCCC
Confidence                    222  89999999999887773

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.36  E-value=1.7e-12  Score=100.47  Aligned_cols=71  Identities=24%  Similarity=0.515  Sum_probs=60.6

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      +.++|+++|+||++||++|+.+.|.+.++++++      ++.++.|++|..                       ..++++
T Consensus        30 ~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~------~~~~~~vd~~~~-----------------------~~~~~~   80 (117)
T 2xc2_A           30 QHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY------DAIFVKVDVDKL-----------------------EETARK   80 (117)
T ss_dssp             HTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS------SSEEEEEETTTS-----------------------HHHHHH
T ss_pred             hCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc------CcEEEEEECCcc-----------------------HHHHHH
Confidence            346899999999999999999999999887765      467888887754                       578999


Q ss_pred             cCCCceeeEEEECCCCcEEec
Q 018266          247 FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~~  267 (358)
                      |++.++|+++++ ++|+++.+
T Consensus        81 ~~v~~~Pt~~~~-~~G~~~~~  100 (117)
T 2xc2_A           81 YNISAMPTFIAI-KNGEKVGD  100 (117)
T ss_dssp             TTCCSSSEEEEE-ETTEEEEE
T ss_pred             cCCCccceEEEE-eCCcEEEE
Confidence            999999998888 89998876

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=99.36  E-value=7.9e-13  Score=111.37  Aligned_cols=60  Identities=20%  Similarity=0.345  Sum_probs=56.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ++| |++.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.+  ++++.|++|
T Consensus        27 p~f~l~d~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--~~vi~is~d   88 (187)
T 3dwv_A           27 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPSN   88 (187)
T ss_dssp             GGSCCBBTTSCBCCGGGGTTSCEEEEEECCBCSCCTTHHHHHHHHHHHHGGGT--CEEEEEEBC
T ss_pred             CCeEEEcCCCCEeeHHHhCCCEEEEEEecCCCCCcHHHHHHHHHHHHHhhhCC--eEEEEEECc
Confidence            456 8999999 99999999999999999999999999999999999998876  999999998

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.36  E-value=1.4e-12  Score=112.87  Aligned_cols=83  Identities=25%  Similarity=0.471  Sum_probs=67.9

Q ss_pred             cCCCceeeec-ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVS-ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      .++.+.+.-. .-.+|+++|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                  
T Consensus        16 ~lt~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~~v~~~~vd~d~~------------------   73 (222)
T 3dxb_A           16 HLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN------------------   73 (222)
T ss_dssp             ECCTTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC------------------
T ss_pred             eCCHHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHHHHHHHHhc----CCcEEEEEECCCC------------------
Confidence            4555555432 1257999999999999999999999999999997    4588999988864                  


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                           ..++++|+|.++|+++++ ++|+++.+
T Consensus        74 -----~~l~~~~~v~~~Pt~~~~-~~G~~~~~   99 (222)
T 3dxb_A           74 -----PGTAPKYGIRGIPTLLLF-KNGEVAAT   99 (222)
T ss_dssp             -----TTTGGGGTCCSBSEEEEE-ETTEEEEE
T ss_pred             -----HHHHHHcCCCcCCEEEEE-ECCeEEEE
Confidence                 467889999999999999 68888765

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.35  E-value=2.5e-12  Score=107.68  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ++| +.+.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.+  ++++.|++|.
T Consensus        30 p~f~l~~~~G~~~~l~~~~Gk~vlv~F~atwC~~C~~~~p~l~~l~~~~~~~~--v~vv~vs~d~   92 (181)
T 2p31_A           30 YDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHH--FNVLAFPCNQ   92 (181)
T ss_dssp             GGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred             CceEeecCCCCEecHHHcCCCEEEEEEeccCCCCcHHHHHHHHHHHHHhhcCC--EEEEEEECcC
Confidence            455 8899999 99999999999999999999999999999999999998876  9999999874

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=99.35  E-value=8.7e-13  Score=111.71  Aligned_cols=97  Identities=18%  Similarity=0.283  Sum_probs=73.2

Q ss_pred             Cccc-cc-CCCCc-eecccCCCC-EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------ChhHH
Q 018266           24 GVEF-LL-SRQGK-VPLSSCGGK-TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENGF   92 (358)
Q Consensus        24 ~~~~-l~-~~~g~-v~l~~~~gk-~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~~~~~   92 (358)
                      .++| +. +.+|+ +++++++|| +++|.||++||++|+.++|.|.++++++.+.+  ++++.|++|.       +.+..
T Consensus        24 ~p~f~l~~~~~G~~~~l~~~~gk~~vlv~F~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~v~~d~~~~~~~d~~~~~  101 (196)
T 2ywi_A           24 APPFALTNVIDGNVVRLEDVKSDAATVIMFICNHCPFVKHVQHELVRLANDYMPKG--VSFVAINSNDAEQYPEDSPENM  101 (196)
T ss_dssp             CCCCEEEETTTCCEEEHHHHCCSSEEEEEECCSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEECSCTTTCGGGSHHHH
T ss_pred             CCceeeeecCCCCEEeHHHhCCCCeEEEEEeCCCCccHHHHHHHHHHHHHHHHhCC--cEEEEEECCccccccccCHHHH
Confidence            3456 77 89999 999999998 59999999999999999999999999998776  8999999973       44555


Q ss_pred             HHHHhhCC--CcccccccceeeeccccCCCCc
Q 018266           93 EEHFKSSD--GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        93 ~~~~~~~~--~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .++.....  ..++.+....+++.|++..+|+
T Consensus       102 ~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  133 (196)
T 2ywi_A          102 KKVAEELGYPFPYLYDETQEVAKAYDAACTPD  133 (196)
T ss_dssp             HHHHHHHTCCSCEEECSSCHHHHHHTCCEESE
T ss_pred             HHHHHHcCCCceEEECCchHHHHHhCCCCCCe
Confidence            55544422  2333344445666666666663

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.35  E-value=2.2e-12  Score=105.94  Aligned_cols=87  Identities=14%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC--Ccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD--GTL  103 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~--~~~  103 (358)
                      +.+.+|+ +++++++||+++|.||+ +||++|+..+|.|.++++++++.+  ++++.|++| +.+...++.....  ..+
T Consensus        20 l~~~~G~~~~l~~~~gk~~vl~F~~~~~c~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d-~~~~~~~~~~~~~~~~~~   96 (163)
T 3gkn_A           20 LSLSGGTQTTLRAHAGHWLVIYFYPKDSTPGATTEGLDFNALLPEFDKAG--AKILGVSRD-SVKSHDNFCAKQGFAFPL   96 (163)
T ss_dssp             EECSTTCEECSGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHHHHHHHTT--CEEEEEESS-CHHHHHHHHHHHCCSSCE
T ss_pred             ccCCCCCEEEHHHhCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHCC--CEEEEEeCC-CHHHHHHHHHHhCCCceE
Confidence            6789999 99999999999999997 999999999999999999999877  999999998 5555555544321  133


Q ss_pred             cccccceeeecccc
Q 018266          104 IEEDLIGLIEDYGA  117 (358)
Q Consensus       104 ~~~~~~~l~~~~gi  117 (358)
                      +.+....+.+.||+
T Consensus        97 ~~d~~~~~~~~~~v  110 (163)
T 3gkn_A           97 VSDGDEALCRAFDV  110 (163)
T ss_dssp             EECTTCHHHHHTTC
T ss_pred             EECCcHHHHHHhCC
Confidence            33333445555554

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=99.34  E-value=4.9e-12  Score=97.69  Aligned_cols=70  Identities=26%  Similarity=0.597  Sum_probs=61.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++.++++     ++.++.|++|..                       ..+++.|+
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~~~~~~v~~~~~-----------------------~~~~~~~~   78 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP-----GAIFLKVDVDEL-----------------------KDVAEAYN   78 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC-----CcEEEEEEcccC-----------------------HHHHHHcC
Confidence            47899999999999999999999999998874     477888888754                       57899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        79 v~~~Pt~~~~-~~g~~~~~   96 (118)
T 2vm1_A           79 VEAMPTFLFI-KDGEKVDS   96 (118)
T ss_dssp             CCSBSEEEEE-ETTEEEEE
T ss_pred             CCcCcEEEEE-eCCeEEEE
Confidence            9999999999 89998866

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=99.34  E-value=1.4e-12  Score=106.97  Aligned_cols=74  Identities=20%  Similarity=0.389  Sum_probs=61.2

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcC--CCceEEEEEEecCC---hhHHHHHH
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDHD---ENGFEEHF   96 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~--~~~~~iv~i~~d~~---~~~~~~~~   96 (358)
                      ++| +.+.+|+ +++++++||+++|+||++||++ |+..+|.|.++++++++.  ..++++++|++|..   .+..+++.
T Consensus         4 p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~   83 (164)
T 2ggt_A            4 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYV   83 (164)
T ss_dssp             CCCEEEETTSCEEEGGGGTTCEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHcCCCEEEEEEEeCCCCchhHHHHHHHHHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHH
Confidence            455 8889999 9999999999999999999998 999999999999999762  12499999999863   44455554


Q ss_pred             hh
Q 018266           97 KS   98 (358)
Q Consensus        97 ~~   98 (358)
                      ..
T Consensus        84 ~~   85 (164)
T 2ggt_A           84 KE   85 (164)
T ss_dssp             HT
T ss_pred             HH
Confidence            43

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=99.34  E-value=1.6e-12  Score=107.23  Aligned_cols=101  Identities=23%  Similarity=0.269  Sum_probs=75.2

Q ss_pred             ceecccc-cCccc-ccCC--CCc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           16 FLTVLAS-EGVEF-LLSR--QGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        16 ~~~~l~~-~~~~~-l~~~--~g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ..++..+ ..++| +.+.  +|+ ++++.+ +||+++|+||++||++|+.++|.|.+++++    +  ++++.|++|.+.
T Consensus        19 ~~~~~~G~~~P~f~l~~~~~~g~~~~~~~~~~gk~vll~F~a~~C~~C~~~~~~l~~l~~~----~--v~vv~v~~~~~~   92 (168)
T 2b1k_A           19 LESALIGKPVPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ----G--IRVVGMNYKDDR   92 (168)
T ss_dssp             CCCTTTTSBCCCCEEEESSSTTCEEEGGGGCCSSCEEEEEECTTCHHHHHHHHHHHHHHHT----T--CCEEEEEESCCH
T ss_pred             ccccccCCcCCCeEeecccCCCcEeehhHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHC----C--CEEEEEECCCCh
Confidence            4444444 34455 7777  898 999885 899999999999999999999999998775    3  889999999887


Q ss_pred             hHHHHHHhhCCCc---ccccccceeeeccccCCCCc
Q 018266           90 NGFEEHFKSSDGT---LIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        90 ~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~~~P~  122 (358)
                      +...++.......   ++.+....+++.|++.++|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  128 (168)
T 2b1k_A           93 QKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPE  128 (168)
T ss_dssp             HHHHHHHHHHCCCCSEEEEETTCHHHHHHTCCSSSE
T ss_pred             HHHHHHHHHcCCCCceeeECcchHHHHHcCccccCE
Confidence            7777776553221   23444456677777777773

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.34  E-value=4.5e-12  Score=100.88  Aligned_cols=91  Identities=11%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .|++|+|+||++||++|+.+.|.|.++++++.     ++.++.|.++..                          .++|+
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~-----~v~~~~vd~~~~--------------------------~~~~~   77 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP-----ETKFVKAIVNSC--------------------------IEHYH   77 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS-----SEEEEEECCSSS--------------------------CSSCC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CcEEEEEEhhcC--------------------------cccCC
Confidence            35899999999999999999999999999874     366666665542                          15899


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      |.++||++++ ++|+++.+       ..|...+....-..++|++.+++.
T Consensus        78 i~~~Pt~~~~-~~G~~v~~-------~~G~~~~~~~~~~~~~l~~~l~~~  119 (135)
T 2dbc_A           78 DNCLPTIFVY-KNGQIEGK-------FIGIIECGGINLKLEELEWKLSEV  119 (135)
T ss_dssp             SSCCSEEEEE-SSSSCSEE-------EESTTTTTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCEEEEE-ECCEEEEE-------EEeEEeeCCCcCCHHHHHHHHHHc
Confidence            9999999999 48887765       344432221111345566666654

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=99.34  E-value=2e-12  Score=106.92  Aligned_cols=74  Identities=22%  Similarity=0.418  Sum_probs=61.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcC--CCceEEEEEEecC---ChhHHHHHH
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR--GTELEVIFISFDH---DENGFEEHF   96 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~--~~~~~iv~i~~d~---~~~~~~~~~   96 (358)
                      ++| |.+.+|+ +++++++||+++|+||++||++ |+..+|.|.++++++++.  ..++++++|++|.   +.+..+++.
T Consensus         7 p~f~l~~~~G~~~~l~~~~gk~vll~F~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~   86 (171)
T 2rli_A            7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYV   86 (171)
T ss_dssp             SCCEEEETTSCEEETTTTTTSEEEEEEECTTCSSSHHHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHH
T ss_pred             CCeEEEeCCCCEEeHHHhCCCEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHH
Confidence            455 8899999 9999999999999999999998 999999999999999752  1349999999984   345555654


Q ss_pred             hh
Q 018266           97 KS   98 (358)
Q Consensus        97 ~~   98 (358)
                      ..
T Consensus        87 ~~   88 (171)
T 2rli_A           87 QD   88 (171)
T ss_dssp             HT
T ss_pred             HH
Confidence            44

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=99.34  E-value=3.4e-12  Score=109.37  Aligned_cols=60  Identities=25%  Similarity=0.225  Sum_probs=55.9

Q ss_pred             ccc-ccCCC-Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           25 VEF-LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        25 ~~~-l~~~~-g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ++| +.+.+ |+ +++++++||+|+|.|||+||++|+..+|.|.++++++++.+  ++|+.|++|
T Consensus        27 p~f~l~~~~~G~~v~l~~~~Gk~vlv~FwatwC~~C~~e~p~l~~l~~~~~~~g--~~vv~v~~d   89 (208)
T 2f8a_A           27 YAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCN   89 (208)
T ss_dssp             GGCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             CceEeeeCCCCCCccHHHcCCCEEEEEEECCCCccHHHHHHHHHHHHHHccCCC--eEEEEEECC
Confidence            455 88888 99 99999999999999999999999999999999999998877  999999987

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=99.33  E-value=1.3e-12  Score=104.66  Aligned_cols=60  Identities=10%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++|+|.|||+||+||+++.|.|+++++++.+.   +.|+.|++|...                    +++.+|+|.+.
T Consensus        40 ~~k~VVVdF~A~WCgPCk~m~PvleelA~e~~~~---v~f~kVDVDe~~--------------------e~a~~y~V~si   96 (160)
T 2av4_A           40 DERLVCIRFGHDYDPDCMKMDELLYKVADDIKNF---CVIYLVDITEVP--------------------DFNTMYELYDP   96 (160)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC--------------------TTTTTTTCCSS
T ss_pred             CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCC---cEEEEEECCCCH--------------------HHHHHcCCCCC
Confidence            4689999999999999999999999999999765   667777776544                    57888999888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        97 PT~   99 (160)
T 2av4_A           97 VSV   99 (160)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            864

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=99.33  E-value=1.1e-12  Score=104.31  Aligned_cols=75  Identities=23%  Similarity=0.273  Sum_probs=59.9

Q ss_pred             EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018266          172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  251 (358)
Q Consensus       172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~  251 (358)
                      +++|+||++||++|+.+.|.|.+++++++      +.++.|+++...+.              ...+....++++|+|.+
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~------v~~~~vd~~~~~~~--------------~~~d~~~~l~~~~~v~~   92 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD------VPIVMFIWGSLIGE--------------RELSAARLEMNKAGVEG   92 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC------SCEEEEEECTTCCH--------------HHHHHHHHHHHHHTCCS
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC------CEEEEEECCCchhh--------------hhhhhhHHHHHHcCCce
Confidence            89999999999999999999999987763      67888888543211              00123578899999999


Q ss_pred             eeeEEEECCCCcEEec
Q 018266          252 IPALVLIGPDGKTIST  267 (358)
Q Consensus       252 ~P~~~lid~~G~v~~~  267 (358)
                      +||+++++ +|+++.+
T Consensus        93 ~Pt~~~~~-~G~~v~~  107 (135)
T 3emx_A           93 TPTLVFYK-EGRIVDK  107 (135)
T ss_dssp             SSEEEEEE-TTEEEEE
T ss_pred             eCeEEEEc-CCEEEEE
Confidence            99999995 9998877

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.33  E-value=3.3e-13  Score=110.41  Aligned_cols=92  Identities=20%  Similarity=0.210  Sum_probs=66.3

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS   99 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (358)
                      +.++| |++.+|+ ++|++++||+|+|.|| ++||++|+..+|.|.+++++++..+  ++++.|+.|. .+...++..+.
T Consensus         9 ~aPdF~l~~~~G~~~~l~d~~Gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~--~~~v~vs~d~-~~~~~~~~~~~   85 (157)
T 4g2e_A            9 LAPDFELPDTELKKVKLSALKGKVVVLAFYPAAFTQVCTKEMCTFRDSMAKFNQVN--AVVLGISVDP-PFSNKAFKEHN   85 (157)
T ss_dssp             BCCCCEEEBTTSCEEEGGGGTTSCEEEEECSCTTCCC------CCSCGGGGGGGCS--SEEEEEESSC-HHHHHHHHHHT
T ss_pred             CCcCeEeECCCCCEEeHHHHCCCeEEEEecCCCCCCccccchhhcccccccccccC--ceEeeecccc-hhHHHHHHHHc
Confidence            44567 8999999 9999999999999999 9999999999999999999998877  8999999885 44455554442


Q ss_pred             CC--cccccccceeeecccc
Q 018266          100 DG--TLIEEDLIGLIEDYGA  117 (358)
Q Consensus       100 ~~--~~~~~~~~~l~~~~gi  117 (358)
                      ..  .++.+...++++.||+
T Consensus        86 ~~~~p~l~D~~~~v~~~ygv  105 (157)
T 4g2e_A           86 KLNFTILSDYNREVVKKYNV  105 (157)
T ss_dssp             TCCSEEEECTTSHHHHHTTC
T ss_pred             CCcEEEEEcCCcHHHHHcCC
Confidence            22  3444445566666665

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.33  E-value=7.7e-13  Score=102.40  Aligned_cols=83  Identities=19%  Similarity=0.422  Sum_probs=63.0

Q ss_pred             CCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCc
Q 018266          158 RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED  237 (358)
Q Consensus       158 ~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  237 (358)
                      ++++.+......+++++|+||++||++|+.+.|.+.+++++++. .+.++.++.|.++..                    
T Consensus        12 l~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~v~~~~vd~~~~--------------------   70 (120)
T 1mek_A           12 LRKSNFAEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATEE--------------------   70 (120)
T ss_dssp             CCTTTHHHHHHHCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTTC--------------------
T ss_pred             echhhHHHHHccCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhc-cCCcEEEEEEcCCCC--------------------
Confidence            34443432223579999999999999999999999999998874 223566666666543                    


Q ss_pred             hhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          238 RARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       238 ~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                         ..++++|++.++|+++++ ++|+++
T Consensus        71 ---~~~~~~~~v~~~Pt~~~~-~~g~~~   94 (120)
T 1mek_A           71 ---SDLAQQYGVRGYPTIKFF-RNGDTA   94 (120)
T ss_dssp             ---CSSHHHHTCCSSSEEEEE-ESSCSS
T ss_pred             ---HHHHHHCCCCcccEEEEE-eCCCcC
Confidence               467889999999999999 677754

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=99.33  E-value=4.4e-12  Score=104.59  Aligned_cols=61  Identities=23%  Similarity=0.408  Sum_probs=56.6

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ++| +.+.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.+  ++++.|++|.
T Consensus        13 p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~vs~d~   75 (170)
T 2p5q_A           13 HDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEKYKDQG--LEILAFPCNQ   75 (170)
T ss_dssp             GGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCT
T ss_pred             cceEEEcCCCCEecHHHhCCCEEEEEEEeccCCccHHHHHHHHHHHHHhccCC--EEEEEEECCC
Confidence            455 8899999 99999999999999999999999999999999999998876  9999999973

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=99.32  E-value=1.9e-12  Score=105.13  Aligned_cols=95  Identities=16%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             cCccc-ccCCCC--------c-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHH
Q 018266           23 EGVEF-LLSRQG--------K-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF   92 (358)
Q Consensus        23 ~~~~~-l~~~~g--------~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~   92 (358)
                      ..++| +.+.+|        + +++++++||+++|.||++||++|+.++|.|.+++++     .++.++.|+++.+.+..
T Consensus        13 ~~p~f~l~~~~g~~~~~~~~~~~~l~~~~gk~~ll~f~~~~C~~C~~~~~~l~~l~~~-----~~v~~v~v~~~~~~~~~   87 (156)
T 1kng_A           13 PAPQTALPPLEGLQADNVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKD-----KRFQLVGINYKDAADNA   87 (156)
T ss_dssp             BCCCCCBCCCTTCEETTEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTC-----TTSEEEEEEESCCHHHH
T ss_pred             CCCCceeeeccCcccccccCceechHHhCCCEEEEEEEcccCHhHHHHHHHHHHHHhc-----CCeEEEEEECCCCHHHH
Confidence            34455 888888        8 999999999999999999999999999999988765     23899999999887777


Q ss_pred             HHHHhhCCC--c-ccccccceeeeccccCCCCc
Q 018266           93 EEHFKSSDG--T-LIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        93 ~~~~~~~~~--~-~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .++......  . +..+....+++.|++.++|+
T Consensus        88 ~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~  120 (156)
T 1kng_A           88 RRFLGRYGNPFGRVGVDANGRASIEWGVYGVPE  120 (156)
T ss_dssp             HHHHHHHCCCCSEEEEETTSHHHHHTTCCSSCE
T ss_pred             HHHHHHcCCCCceeeeCchhHHHHhcCcCccCe
Confidence            777665322  2 33444556777788877773

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=99.32  E-value=3.5e-12  Score=103.51  Aligned_cols=92  Identities=23%  Similarity=0.392  Sum_probs=72.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe--cCChhHHHHHHhhCC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF--DHDENGFEEHFKSSD  100 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~--d~~~~~~~~~~~~~~  100 (358)
                      ++| +.+.+|+ +++++++ |+++|.||++||++|+.++|.|.++++++   +  ++++.|++  +.+.+.++++.....
T Consensus        12 p~f~l~~~~g~~~~l~~~~-k~vll~f~~~~C~~C~~~~~~l~~l~~~~---~--v~~v~v~~d~~~~~~~~~~~~~~~~   85 (154)
T 3ia1_A           12 PDFLLLDPKGQPVTPATVS-KPAVIVFWASWCTVCKAEFPGLHRVAEET---G--VPFYVISREPRDTREVVLEYMKTYP   85 (154)
T ss_dssp             CCCCEECTTSCEECTTTSC-SSEEEEEECTTCHHHHHHHHHHHHHHHHH---C--CCEEEEECCTTCCHHHHHHHHTTCT
T ss_pred             CceEEECCCCCEechHHcC-CeEEEEEEcccChhHHHHHHHHHHHHHHc---C--CeEEEEeCCCcccHHHHHHHHHHcC
Confidence            455 8889999 9999999 99999999999999999999999999999   3  78999999  456666777665543


Q ss_pred             C--ccccc---ccceeeeccccCCCCc
Q 018266          101 G--TLIEE---DLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 ~--~~~~~---~~~~l~~~~gi~~~P~  122 (358)
                      .  .++.+   ....+++.|++.++|+
T Consensus        86 ~~~~~~~d~~~~~~~~~~~~~v~~~P~  112 (154)
T 3ia1_A           86 RFIPLLASDRDRPHEVAARFKVLGQPW  112 (154)
T ss_dssp             TEEECBCCSSCCHHHHHTTSSBCSSCE
T ss_pred             CCcccccccccchHHHHHHhCCCcccE
Confidence            3  22332   4456777788877774

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=99.00  E-value=1.4e-13  Score=112.56  Aligned_cols=96  Identities=24%  Similarity=0.352  Sum_probs=70.7

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHH-HHHHHh-cCCCceEEEEEEecCChhHHHHHHhhCC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQ-LYDTLR-TRGTELEVIFISFDHDENGFEEHFKSSD  100 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~-~~~~l~-~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++|+.++|.|.+ +++++. ..+  +.++.|++|.+.+...++.....
T Consensus        14 p~f~l~~~~g~~~~l~~~~gk~vll~f~a~~C~~C~~~~~~l~~~l~~~~~~~~~--~~vv~v~~d~~~~~~~~~~~~~~   91 (159)
T 2ls5_A           14 PDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKEMPFIEKDIWLKHKDNAD--FALIGIDRDEPLEKVLAFAKSTG   91 (159)
Confidence            455 8889999 99999999999999999999999999999998 988887 444  88999998876555555443311


Q ss_pred             --Ccccccccceeeecccc--CCCCc
Q 018266          101 --GTLIEEDLIGLIEDYGA--DAYPF  122 (358)
Q Consensus       101 --~~~~~~~~~~l~~~~gi--~~~P~  122 (358)
                        ..++.+....+.+.|++  .++|+
T Consensus        92 ~~~~~~~d~~~~~~~~~~~~~~~~P~  117 (159)
T 2ls5_A           92 VTYPLGLDPGADIFAKYALRDAGITR  117 (159)
Confidence              13333444456666663  33553

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=99.32  E-value=5.1e-12  Score=96.77  Aligned_cols=70  Identities=24%  Similarity=0.594  Sum_probs=61.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++.++++     ++.++.|++|..                       ..++++|+
T Consensus        25 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~-----------------------~~~~~~~~   76 (113)
T 1ti3_A           25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDEL-----------------------KAVAEEWN   76 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTC-----------------------HHHHHHHH
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC-----CcEEEEEEcccc-----------------------HHHHHhCC
Confidence            58999999999999999999999999988874     478888888754                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        77 v~~~Pt~~~~-~~G~~~~~   94 (113)
T 1ti3_A           77 VEAMPTFIFL-KDGKLVDK   94 (113)
T ss_dssp             CSSTTEEEEE-ETTEEEEE
T ss_pred             CCcccEEEEE-eCCEEEEE
Confidence            9999999999 79998876

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=99.32  E-value=4.3e-12  Score=104.80  Aligned_cols=89  Identities=16%  Similarity=0.205  Sum_probs=59.5

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHH-H--HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCc
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQ-L--IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYED  237 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~  237 (358)
                      +.+.....+||+|+|+||++||++|+.+.+. +  .++.+.+.    .++.++.|..|...+-...+ .           
T Consensus        30 ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~----~~fv~ikVD~de~~~l~~~y-~-----------   93 (173)
T 3ira_A           30 EAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMN----EAFVSIKVDREERPDIDNIY-M-----------   93 (173)
T ss_dssp             HHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHH----HHCEEEEEETTTCHHHHHHH-H-----------
T ss_pred             HHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHH----hcCceeeeCCcccCcHHHHH-H-----------
Confidence            3445555678999999999999999998883 2  45555554    34556666655443211111 0           


Q ss_pred             hhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          238 RARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       238 ~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                         ..+...+++.++|++++++++|++++..
T Consensus        94 ---~~~q~~~gv~g~Pt~v~l~~dG~~v~~~  121 (173)
T 3ira_A           94 ---TVCQIILGRGGWPLNIIMTPGKKPFFAG  121 (173)
T ss_dssp             ---HHHHHHHSCCCSSEEEEECTTSCEEEEE
T ss_pred             ---HHHHHHcCCCCCcceeeECCCCCceeee
Confidence               1112224999999999999999999763

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=99.32  E-value=4.4e-12  Score=116.89  Aligned_cols=93  Identities=20%  Similarity=0.287  Sum_probs=73.2

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-----ChhHHHHHHhhCC-
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKSSD-  100 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~-  100 (358)
                      +.+.+|+ +++++++||+|+|+||++||++|+.++|.|.++++++++.+  ++++.|++|.     +.+.++++..... 
T Consensus        67 L~d~dG~~vsLsdl~GK~vLl~F~atwC~~C~~~~p~L~~l~~~~~~~~--v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l  144 (352)
T 2hyx_A           67 LNTPGNKPIDLKSLRGKVVLIDFWAYSCINCQRAIPHVVGWYQAYKDSG--LAVIGVHTPEYAFEKVPGNVAKGAANLGI  144 (352)
T ss_dssp             ESSGGGCCCCGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEECCSSGGGGCHHHHHHHHHHHTC
T ss_pred             cCCCCCCEEcHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHhhcCC--eEEEEEECCcccccCCHHHHHHHHHHcCC
Confidence            4578898 99999999999999999999999999999999999998866  9999999863     4556666655522 


Q ss_pred             -CcccccccceeeeccccCCCCc
Q 018266          101 -GTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 -~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                       ..++.+....+++.|++..+|+
T Consensus       145 ~fpv~~D~~~~l~~~ygV~~~Pt  167 (352)
T 2hyx_A          145 SYPIALDNNYATWTNYRNRYWPA  167 (352)
T ss_dssp             CSCEEECTTSHHHHHTTCCEESE
T ss_pred             CccEEeCCcHHHHHHcCCCccCE
Confidence             2344444456677777777774

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.31  E-value=2e-12  Score=105.80  Aligned_cols=71  Identities=17%  Similarity=0.201  Sum_probs=60.3

Q ss_pred             Cccc-ccCCCCc-eecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHh
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (358)
                      .++| +.+.+|+ +++++++|| +++|.|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .+...++..
T Consensus        15 ~p~f~l~~~~G~~~~l~~~~gk~~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~   89 (160)
T 1xvw_A           15 APDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKIWAT   89 (160)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHHHHH
T ss_pred             CCCeEeEcCCCCEEeHHHhcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--cEEEEEeCCC-HHHHHHHHH
Confidence            3455 8899999 999999998 9999998 9999999999999999999997665  9999999984 444455533

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=99.31  E-value=6.8e-12  Score=105.15  Aligned_cols=61  Identities=23%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .++| +++.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.+  ++++.|++|
T Consensus        27 ~p~f~l~~~~G~~~~l~~~~gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d   89 (183)
T 2obi_A           27 MHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAECG--LRILAFPCN   89 (183)
T ss_dssp             GGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             ccceEEEcCCCCEeeHHHcCCCEEEEEEeCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEEECC
Confidence            3455 8899999 99999999999999999999999999999999999998876  999999987

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=99.30  E-value=6.6e-12  Score=103.44  Aligned_cols=61  Identities=21%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ++| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.+  ++++.|++|.
T Consensus        12 p~f~l~~~~G~~~~l~~~~gk~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--~~vv~v~~d~   74 (169)
T 2v1m_A           12 YEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTRLVGKG--LRILAFPCNQ   74 (169)
T ss_dssp             GGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred             ccceeecCCCCCccHHHcCCCEEEEEEeeccCCchHHHHHHHHHHHHHhhcCC--eEEEEEECCc
Confidence            455 8899999 99999999999999999999999999999999999998876  9999999873

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=99.30  E-value=1e-11  Score=104.22  Aligned_cols=72  Identities=19%  Similarity=0.161  Sum_probs=61.4

Q ss_pred             CCceeccccc-Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           14 SDFLTVLASE-GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        14 ~~~~~~l~~~-~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ..+..+-.+. .++| +.+.+|+ +++++++||+++|.||++||++|+..+|.|.++++++++.+  ++++.|++|.
T Consensus        18 ~~~~~~~~g~~~p~f~l~~~~G~~v~l~~~~Gk~vlv~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~is~d~   92 (185)
T 2gs3_A           18 LYFQSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAECG--LRILAFPCNQ   92 (185)
T ss_dssp             CSSGGGGGCCCGGGCEEEBTTSCEEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCT
T ss_pred             hhhhhccCCCCcCCceeEcCCCCEeeHHHcCCCEEEEEEecCCCCchHHHHHHHHHHHHHhhcCC--eEEEEEECcc
Confidence            3344444443 3455 8999999 99999999999999999999999999999999999998876  9999999873

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=99.30  E-value=7.9e-12  Score=107.40  Aligned_cols=61  Identities=21%  Similarity=0.331  Sum_probs=56.1

Q ss_pred             cCccc-ccCCC-Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           23 EGVEF-LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        23 ~~~~~-l~~~~-g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ...+| +++.+ |+ ++|++++||+|+|.|||+||++|+ .+|.|.++++++++.|  ++|+.|++|
T Consensus        34 ~~pdF~l~d~~~G~~v~Lsd~~GKvvll~FwAt~C~~c~-e~p~L~~l~~~~~~~g--~~Vlgvs~d   97 (215)
T 2i3y_A           34 TIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA-QYPELNALQEELKPYG--LVVLGFPCN   97 (215)
T ss_dssp             CGGGCEEEBSSSSCEEEGGGGTTSEEEEEEECSSSGGGG-GHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             CcCCcEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCChH-hHHHHHHHHHHhccCC--eEEEEEEcc
Confidence            34566 88999 99 999999999999999999999999 8999999999999887  999999986

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=99.30  E-value=1e-11  Score=109.03  Aligned_cols=71  Identities=20%  Similarity=0.439  Sum_probs=61.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.+.+++++++. .+.++.++.|+++.+.                     ...++++|+
T Consensus        29 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~-~~~~v~~~~vd~~~~~---------------------~~~l~~~~~   86 (244)
T 3q6o_A           29 SRSAWAVEFFASWCGHCIAFAPTWXALAEDVKA-WRPALYLAALDCAEET---------------------NSAVCRDFN   86 (244)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTGG-GTTTEEEEEEETTSTT---------------------THHHHHHTT
T ss_pred             CCCeEEEEEECCcCHHHHHHHHHHHHHHHHHHh-ccCcEEEEEEeCCchh---------------------hHHHHHHcC
Confidence            358999999999999999999999999999974 3347999999986432                     478999999


Q ss_pred             CCceeeEEEECCC
Q 018266          249 IKGIPALVLIGPD  261 (358)
Q Consensus       249 v~~~P~~~lid~~  261 (358)
                      |.++|+++++++.
T Consensus        87 v~~~Pt~~~~~~g   99 (244)
T 3q6o_A           87 IPGFPTVRFFXAF   99 (244)
T ss_dssp             CCSSSEEEEECTT
T ss_pred             CCccCEEEEEeCC
Confidence            9999999999753

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=99.29  E-value=4.2e-12  Score=92.04  Aligned_cols=63  Identities=17%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018266          172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  251 (358)
Q Consensus       172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~  251 (358)
                      .+++.||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|++.+
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~~   55 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMA   55 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSC
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhc----CCeEEEEEECCCC-----------------------HHHHHhCCcee
Confidence            46889999999999999999999999986    5688888888764                       46778999999


Q ss_pred             eeeEEEECCCCcE
Q 018266          252 IPALVLIGPDGKT  264 (358)
Q Consensus       252 ~P~~~lid~~G~v  264 (358)
                      +|++++   +|++
T Consensus        56 ~Pt~~~---~G~~   65 (85)
T 1nho_A           56 VPAIAI---NGVV   65 (85)
T ss_dssp             SSEEEE---TTTE
T ss_pred             eCEEEE---CCEE
Confidence            999998   8887

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.28  E-value=5.3e-12  Score=91.49  Aligned_cols=64  Identities=23%  Similarity=0.421  Sum_probs=56.1

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK  250 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~  250 (358)
                      .++++.||++||++|+.+.|.|.+++++++    .++.++.|++|.+                       ..++++|++.
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~v~   55 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVMEN-----------------------PQKAMEYGIM   55 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSSS-----------------------CCTTTSTTTC
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcC----CceEEEEEECCCC-----------------------HHHHHHCCCc
Confidence            578999999999999999999999999886    5788999988764                       3567889999


Q ss_pred             ceeeEEEECCCCcE
Q 018266          251 GIPALVLIGPDGKT  264 (358)
Q Consensus       251 ~~P~~~lid~~G~v  264 (358)
                      ++|++++   +|++
T Consensus        56 ~~Pt~~~---~G~~   66 (85)
T 1fo5_A           56 AVPTIVI---NGDV   66 (85)
T ss_dssp             CSSEEEE---TTEE
T ss_pred             ccCEEEE---CCEE
Confidence            9999998   7887

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=99.28  E-value=4.6e-12  Score=99.56  Aligned_cols=63  Identities=13%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcC--CCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR--GTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~--~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      .+|+++|+|||+||+||+.++|.|+++++.+...  ...+.++.|+++.+.                    +++++|+|.
T Consensus        32 ~~~~vlv~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~--------------------~l~~~~~v~   91 (127)
T 3h79_A           32 PEKDVFVLYYVPWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYP--------------------DVIERMRVS   91 (127)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCH--------------------HHHHHTTCC
T ss_pred             CCCCEEEEEECCccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccH--------------------hHHHhcCCc
Confidence            4899999999999999999999999999988632  234777777777554                    578889999


Q ss_pred             CCCcc
Q 018266          119 AYPFT  123 (358)
Q Consensus       119 ~~P~~  123 (358)
                      ++|+.
T Consensus        92 ~~Pt~   96 (127)
T 3h79_A           92 GFPTM   96 (127)
T ss_dssp             SSSEE
T ss_pred             cCCEE
Confidence            99964

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=99.28  E-value=6.3e-12  Score=104.15  Aligned_cols=68  Identities=19%  Similarity=0.305  Sum_probs=61.4

Q ss_pred             ccccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCCh-hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           20 LASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        20 l~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +..+-++| |++.+|+ |++++++||+|+|+||++||+ .|...++.+.++++.+++.+.++++++|++|.
T Consensus         8 ~~~~~PdF~L~d~~G~~v~l~d~~Gk~vll~F~~t~Cp~~Cp~~~~~l~~l~~~~~~~~~~v~~v~isvDp   78 (170)
T 4hde_A            8 LNWDLETFQFTNQDGKPFGTKDLKGKVWVADFMFTNCQTVCPPMTANMAKLQKMAKEEKLDVQFVSFSVDP   78 (170)
T ss_dssp             CCBCCCCCEEECTTSCEEEHHHHTTSCEEEEEECTTCSSSHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             CCCcCCCcEEECCCCCEEeHHHhCCCEEEEEEECCCCCCcccHHHHHHHHHHHhhhcccccceeEeeecCc
Confidence            34455677 9999999 999999999999999999997 69999999999999998888789999999984

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.28  E-value=5.5e-12  Score=104.17  Aligned_cols=95  Identities=9%  Similarity=0.132  Sum_probs=72.8

Q ss_pred             cCccc-cc-CCCCc-eecccC-CCCEEEEEEe-CCCChhhhh-hhHHHHHHHHHHhcCCCce-EEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LL-SRQGK-VPLSSC-GGKTICLFFS-ANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~-~~~g~-v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~~~~~~~~l~~~~~~~-~iv~i~~d~~~~~~~~~   95 (358)
                      ..++| +. +.+|+ ++|+++ +||+++|.|| +.||++|+. .+|.|.++++++++.+  + +|+.|+.|. ....+++
T Consensus         8 ~aP~f~l~~~~~G~~v~L~d~~~Gk~vvl~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~~~~   84 (167)
T 2wfc_A            8 KLPAVTVFGATPNDKVNMAELFAGKKGVLFAVPGAFTPGSSKTHLPGYVEQAAAIHGKG--VDIIACMAVND-SFVMDAW   84 (167)
T ss_dssp             BCCCCEEESSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHHTT--CCEEEEEESSC-HHHHHHH
T ss_pred             cCCCcEeecCCCCcEEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCC-HHHHHHH
Confidence            34566 77 88999 999998 9999999987 999999999 9999999999998877  8 999999984 4455555


Q ss_pred             HhhCC----CcccccccceeeeccccCCC
Q 018266           96 FKSSD----GTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        96 ~~~~~----~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ..+..    ..++.+...++++.||+...
T Consensus        85 ~~~~~~~~~fp~l~D~~~~~~~~~gv~~~  113 (167)
T 2wfc_A           85 GKAHGADDKVQMLADPGGAFTKAVDMELD  113 (167)
T ss_dssp             HHHTTCTTTSEEEECTTSHHHHHTTCEEC
T ss_pred             HHhcCCCcceEEEECCCCcHHHHcCCccc
Confidence            44421    33445555566777776443

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=7.2e-12  Score=113.31  Aligned_cols=70  Identities=26%  Similarity=0.549  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+|||+||++|+.+.|.|.+++++++    ..+.|+.|.+|.+.                     ...++++|+
T Consensus        34 ~~~~vlV~F~A~wC~~C~~~~p~~~~la~~~~----~~~~~~~v~~d~~~---------------------~~~l~~~~~   88 (298)
T 3ed3_A           34 TNYTSLVEFYAPWCGHCKKLSSTFRKAAKRLD----GVVQVAAVNCDLNK---------------------NKALCAKYD   88 (298)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTSTT---------------------THHHHHHTT
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHcc----CCcEEEEEEccCcc---------------------CHHHHHhCC
Confidence            46899999999999999999999999999987    45889999998543                     478999999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++||++++++ |++
T Consensus        89 I~~~Pt~~~~~~-g~~  103 (298)
T 3ed3_A           89 VNGFPTLMVFRP-PKI  103 (298)
T ss_dssp             CCBSSEEEEEEC-CCC
T ss_pred             CCccceEEEEEC-Cce
Confidence            999999999954 553

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=99.27  E-value=1e-11  Score=104.79  Aligned_cols=61  Identities=20%  Similarity=0.357  Sum_probs=56.8

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ++| +.+.+|+ +++++++||+|+|.||++||++|+..+|.|.++++++++.+  ++++.|++|.
T Consensus        29 p~f~l~~~~G~~~~l~~~~Gk~vll~F~atwC~~C~~~~~~l~~l~~~~~~~~--v~vv~vs~d~   91 (190)
T 2vup_A           29 FDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQG--FTVLAFPCNQ   91 (190)
T ss_dssp             GGSCCBBTTSSBCCGGGGTTSCEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--CEEEEEECCC
T ss_pred             cCeEEEcCCCCEEEHHHcCCCEEEEEEecCCCCccHHHHHHHHHHHHHHhcCC--eEEEEEEcCc
Confidence            455 8899999 99999999999999999999999999999999999998876  9999999983

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=99.27  E-value=6.6e-12  Score=98.15  Aligned_cols=79  Identities=20%  Similarity=0.442  Sum_probs=61.5

Q ss_pred             CCcEEEEEEecc-------CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018266          169 AGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  241 (358)
Q Consensus       169 ~~k~vlv~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      .+++++|+||++       ||++|+.+.|.|.+++++++    .++.++.|.++... .|.               +...
T Consensus        23 ~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~----~~~~~~~vd~~~~~-~~~---------------d~~~   82 (123)
T 1wou_A           23 NGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKP-YWK---------------DPNN   82 (123)
T ss_dssp             TTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHH-HHH---------------CTTC
T ss_pred             CCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcC----CCcEEEEEECCCch-hhh---------------chhH
Confidence            589999999999       99999999999999988775    46888888885321 110               1135


Q ss_pred             HHHHHcCCCceeeEEEECCCCcEEec
Q 018266          242 DLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       242 ~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+++.|+|.++||++++++.+++...
T Consensus        83 ~~~~~~~i~~~Pt~~~~~~~~~~~g~  108 (123)
T 1wou_A           83 DFRKNLKVTAVPTLLKYGTPQKLVES  108 (123)
T ss_dssp             HHHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             HHHHHCCCCeeCEEEEEcCCceEecc
Confidence            78888999999999999775555443

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.27  E-value=4.2e-12  Score=106.16  Aligned_cols=92  Identities=13%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC-
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS-   99 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~-   99 (358)
                      .++| |.+.+|+ +++++++||+++|.|| +.||++|+..+|.|.++++++++.+  ++|+.|++|. .+...++.... 
T Consensus        31 aP~f~l~~~~G~~v~l~d~~Gk~vvl~f~~~~~c~~C~~el~~l~~l~~~~~~~~--~~vv~Vs~D~-~~~~~~~~~~~~  107 (179)
T 3ixr_A           31 LLNHPLMLSGSTCKTLSDYTNQWLVLYFYPKDNTPGSSTEGLEFNLLLPQFEQIN--ATVLGVSRDS-VKSHDSFCAKQG  107 (179)
T ss_dssp             HHHCCEEEGGGEEECGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHHHHHHTTT--EEEEEEESCC-HHHHHHHHHHHT
T ss_pred             CCCeeEECCCCCEEeHHHHCCCCEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEcCCC-HHHHHHHHHHcC
Confidence            3566 8899999 9999999999999998 9999999999999999999999877  9999999985 34444443331 


Q ss_pred             -CCcccccccceeeeccccC
Q 018266          100 -DGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus       100 -~~~~~~~~~~~l~~~~gi~  118 (358)
                       ...++.+....+++.||+.
T Consensus       108 ~~f~~l~D~~~~~~~~~gv~  127 (179)
T 3ixr_A          108 FTFPLVSDSDAILCKAFDVI  127 (179)
T ss_dssp             CCSCEEECTTCHHHHHTTCE
T ss_pred             CceEEEECCchHHHHHcCCc
Confidence             1233333344555555553

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.26  E-value=5.5e-12  Score=108.99  Aligned_cols=78  Identities=23%  Similarity=0.277  Sum_probs=61.6

Q ss_pred             ceecccc-cCccc-ccCC--CC--c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           16 FLTVLAS-EGVEF-LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        16 ~~~~l~~-~~~~~-l~~~--~g--~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +..+..+ ..++| +.+.  +|  + ++++++ +||+|+|+|| ++||++|+..+|.|.++++++++.+  ++|+.|++|
T Consensus        22 M~~l~~G~~aP~F~l~~~~~~G~~~~v~L~d~~~Gk~vvl~F~patwCp~C~~e~p~l~~l~~~~~~~~--v~vv~Is~D   99 (221)
T 2c0d_A           22 MKLSLVTKKAYNFTAQGLNKNNEIINVDLSSFIGQKYCCLLFYPLNYTFVCPTEIIEFNKHIKDFENKN--VELLGISVD   99 (221)
T ss_dssp             ----CTTSBCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECCCCTTTCCHHHHHHHHHTHHHHHHTT--EEEEEEESS
T ss_pred             cccCCCCCCCCCeEEeccccCCCccEEeHHHHcCCCeEEEEEEcCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEeCC
Confidence            3334444 44566 7777  89  8 999999 9999999999 9999999999999999999998776  999999997


Q ss_pred             CChhHHHHHH
Q 018266           87 HDENGFEEHF   96 (358)
Q Consensus        87 ~~~~~~~~~~   96 (358)
                      . .+...++.
T Consensus       100 ~-~~~~~~~~  108 (221)
T 2c0d_A          100 S-VYSHLAWK  108 (221)
T ss_dssp             C-HHHHHHHH
T ss_pred             C-HHHHHHHH
Confidence            5 33344443

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.26  E-value=7.3e-12  Score=108.43  Aligned_cols=64  Identities=25%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             cCccc-cc---CCCCc-eecccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LL---SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~---~~~g~-v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| |.   +.+|+ +++++++||+++|.||+ +||++|+..+|.|.++++++++.+  ++|++|++|..
T Consensus        45 ~aP~f~l~~~~d~~G~~v~l~~~~Gk~vll~F~a~~wC~~C~~~~p~l~~l~~~~~~~~--v~vv~Is~D~~  114 (222)
T 3ztl_A           45 PAPEFKGQAVINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEFNSRN--CQVIACSTDSQ  114 (222)
T ss_dssp             ECCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCSSCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCeEEecccCCCCcEEeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence            34456 65   44668 99999999999999996 999999999999999999999776  99999999863

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=99.26  E-value=1.6e-11  Score=104.97  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=56.1

Q ss_pred             ccCccc-ccCCC-Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           22 SEGVEF-LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        22 ~~~~~~-l~~~~-g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ...++| +++.+ |+ ++|++++||+|+|.|||+||++| ..+|.|.++++++++.|  ++|+.|++|
T Consensus        15 ~~~pdF~l~d~~~G~~v~Ls~~kGKvvll~F~At~C~~c-~e~p~L~~l~~~~~~~g--~~vlgvs~d   79 (207)
T 2r37_A           15 GTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNALQEELAPFG--LVILGFPCN   79 (207)
T ss_dssp             CCGGGCEEEBTTSSCEEEGGGGTTSEEEEEEECSSSTTT-THHHHHHHHHHHHGGGT--EEEEEEECC
T ss_pred             CccCCeEeeeCCCCCEEcHHHhCCCEEEEEEeCCCCCCh-HHHHHHHHHHHHhccCC--EEEEEEECc
Confidence            344566 88999 99 99999999999999999999999 68999999999999887  999999976

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=99.26  E-value=1.2e-11  Score=102.36  Aligned_cols=72  Identities=22%  Similarity=0.377  Sum_probs=62.2

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCCh-hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC---ChhHHHHH
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEH   95 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~---~~~~~~~~   95 (358)
                      .++| |.+.+|+ +++++++||+++|.||++||+ +|+..+|.|.++++++++.+.+++++.|++|.   +.+...++
T Consensus        13 ~p~f~l~~~~G~~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~   90 (174)
T 1xzo_A           13 VEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDPENDKPKQLKKF   90 (174)
T ss_dssp             CCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHH
T ss_pred             cCCcEEEcCCCCEEehhhcCCCEEEEEEEcCCCcchhHHHHHHHHHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHH
Confidence            3455 8899999 999999999999999999999 99999999999999998876569999999983   44444554

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.26  E-value=6.5e-12  Score=106.15  Aligned_cols=70  Identities=21%  Similarity=0.266  Sum_probs=59.4

Q ss_pred             Cccc-ccCC--CC--c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           24 GVEF-LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        24 ~~~~-l~~~--~g--~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      .++| +.+.  +|  + ++++++ +||+++|+|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .+...++
T Consensus         6 aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~~~~   82 (192)
T 2h01_A            6 APSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDS-KFTHLAW   82 (192)
T ss_dssp             CCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCcEeEeeecCCceeEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEEeCC-HHHHHHH
Confidence            3455 6677  89  8 999999 9999999999 9999999999999999999998766  9999999984 4444444


Q ss_pred             H
Q 018266           96 F   96 (358)
Q Consensus        96 ~   96 (358)
                      .
T Consensus        83 ~   83 (192)
T 2h01_A           83 K   83 (192)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.25  E-value=6.6e-12  Score=107.94  Aligned_cols=70  Identities=21%  Similarity=0.262  Sum_probs=60.1

Q ss_pred             cCccc-ccCC--CC--c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHH
Q 018266           23 EGVEF-LLSR--QG--K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE   94 (358)
Q Consensus        23 ~~~~~-l~~~--~g--~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~   94 (358)
                      ..++| +.+.  +|  + ++++++ +||+++|+|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .+...+
T Consensus        26 ~aP~f~l~~~~~~G~~~~v~l~d~~~gk~vvl~F~pa~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~  102 (213)
T 2i81_A           26 EAPFFKAEAVFGDNSFGEVNLTQFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDAFHERN--VELLGCSVDS-KYTHLA  102 (213)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHH
T ss_pred             cCCCeEeeccccCCceeEEeHHHHcCCCeEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHH
Confidence            44566 7777  89  8 999999 9999999999 9999999999999999999998766  9999999984 444444


Q ss_pred             H
Q 018266           95 H   95 (358)
Q Consensus        95 ~   95 (358)
                      +
T Consensus       103 ~  103 (213)
T 2i81_A          103 W  103 (213)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=99.25  E-value=3.4e-11  Score=116.65  Aligned_cols=88  Identities=20%  Similarity=0.431  Sum_probs=68.9

Q ss_pred             cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      .++++.+....+ .+++++|+|||+||++|+.+.|.+.+++++++. .+.++.|+.|+++.+.                 
T Consensus        16 ~Lt~~~f~~~v~~~~k~vlV~FyA~WC~pCk~~~P~l~~la~~~~~-~~~~v~~~~VD~d~d~-----------------   77 (519)
T 3t58_A           16 LLDADSVRPTVLGSSSAWAVEFFASWCGHAIAFAPTWKELANDVKD-WRPALNLAVLDCAEET-----------------   77 (519)
T ss_dssp             EECTTTHHHHHSSCSSEEEEEEECTTSHHHHHHHHHHHHHHHHHGG-GTTTEEEEEEETTSGG-----------------
T ss_pred             ECChHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhC-cCCcEEEEEEECCccc-----------------
Confidence            344444432222 358999999999999999999999999999974 3347999999987533                 


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECC---CCcEEe
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGP---DGKTIS  266 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~---~G~v~~  266 (358)
                          ...++++|+|.++|+++++++   +|+.+.
T Consensus        78 ----~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~  107 (519)
T 3t58_A           78 ----NSAVCREFNIAGFPTVRFFQAFTKNGSGAT  107 (519)
T ss_dssp             ----GHHHHHHTTCCSBSEEEEECTTCCSCCCEE
T ss_pred             ----cHHHHHHcCCcccCEEEEEcCcccCCCcee
Confidence                578999999999999999986   565443

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.25  E-value=8.2e-12  Score=105.80  Aligned_cols=62  Identities=19%  Similarity=0.258  Sum_probs=54.1

Q ss_pred             C--c-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHh
Q 018266           33 G--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (358)
Q Consensus        33 g--~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (358)
                      |  + +++++++||+++|.|| ++||++|+..+|.|.++++++.+.+  ++++.|++|. .+...++..
T Consensus        33 G~~~~v~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Vs~d~-~~~~~~~~~   98 (195)
T 2bmx_A           33 DYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDS-EFAHFQWRA   98 (195)
T ss_dssp             GGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHHHH
T ss_pred             CCccEeeHHHhCCCcEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHHH
Confidence            7  7 9999999999999999 9999999999999999999998765  9999999985 444444433

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.24  E-value=6.8e-12  Score=102.63  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=70.7

Q ss_pred             Cccc-ccCCCCc-eecccCCCC--EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGK--TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk--~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      .++| +.+.+|+ +++++++||  +|+|+|| +.||++|+..+|.|.++++++++.+   +|+.|++|. .+...+|...
T Consensus        13 ~P~f~l~~~~G~~v~l~~~~gk~~~vvl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~---~vv~is~d~-~~~~~~~~~~   88 (159)
T 2a4v_A           13 IPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEYA---AVFGLSADS-VTSQKKFQSK   88 (159)
T ss_dssp             CCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTTC---EEEEEESCC-HHHHHHHHHH
T ss_pred             CCCeEEECCCCCEEeHHHHhCCCCeEEEEEcCCCCCCCHHHHHHHHHHHHHHHHhCC---cEEEEeCCC-HHHHHHHHHH
Confidence            3456 8899999 999999887  8999997 9999999999999999999998775   799999984 4445555443


Q ss_pred             CC--CcccccccceeeeccccCCCC
Q 018266           99 SD--GTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        99 ~~--~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      ..  ..++.+....+.+.||+...|
T Consensus        89 ~~~~~~~l~D~~~~~~~~~gv~~~p  113 (159)
T 2a4v_A           89 QNLPYHLLSDPKREFIGLLGAKKTP  113 (159)
T ss_dssp             HTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             hCCCceEEECCccHHHHHhCCcccc
Confidence            21  233344444566666666555

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=99.24  E-value=9.1e-12  Score=99.86  Aligned_cols=88  Identities=20%  Similarity=0.307  Sum_probs=59.0

Q ss_pred             CcEEEEEEeccC--CcccHhhHHHHHHHHHHhhcccCCceE--EEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          170 GKTIGLYFGAHW--CPPCRSFTSQLIEVYNELKTTANHCFE--VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       170 ~k~vlv~F~a~w--C~~C~~~~~~l~~l~~~~~~~~~~~~~--vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      ++.++|+||++|  |++|+.+.|.|.+++++| .    ++.  ++.|++|.                       ...+++
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~----~v~~~~~~Vd~d~-----------------------~~~la~   85 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-P----QFDWQVAVADLEQ-----------------------SEAIGD   85 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-T----TSCCEEEEECHHH-----------------------HHHHHH
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-c----ccceeEEEEECCC-----------------------CHHHHH
Confidence            345788899887  999999999999999887 2    355  66666553                       468999


Q ss_pred             HcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcC
Q 018266          246 IFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGD  300 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~  300 (358)
                      +|+|.++||+++| ++|+++.+       ..|...       .++|.+.+++.+.
T Consensus        86 ~~~V~~iPT~~~f-k~G~~v~~-------~~G~~~-------~~~l~~~i~~~l~  125 (142)
T 2es7_A           86 RFNVRRFPATLVF-TDGKLRGA-------LSGIHP-------WAELLTLMRSIVD  125 (142)
T ss_dssp             TTTCCSSSEEEEE-SCC----C-------EESCCC-------HHHHHHHHHHHHC
T ss_pred             hcCCCcCCeEEEE-eCCEEEEE-------EeCCCC-------HHHHHHHHHHHhc
Confidence            9999999999999 89998876       345433       3455555555544

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=99.24  E-value=5.6e-13  Score=102.15  Aligned_cols=75  Identities=13%  Similarity=0.130  Sum_probs=54.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +...+||+||++||++|+.+.+.+...++...  ....+.++.|.++.+.                     ...++..|+
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a--~~~~~~l~~vdv~~~~---------------------~~~la~~~~   73 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTD--EGRAAPVQRLQMRDPL---------------------PPGLELARP   73 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSH--HHHHSCEEEEETTSCC---------------------CTTCBCSSC
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhh--hcccceEEEEECCCCC---------------------chhHHHHCC
Confidence            44789999999999999999875544332211  0023668888888652                     245677899


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||+++|+ +|+.+.+
T Consensus        74 V~g~PT~i~f~-~G~ev~R   91 (116)
T 3dml_A           74 VTFTPTFVLMA-GDVESGR   91 (116)
T ss_dssp             CCSSSEEEEEE-TTEEEEE
T ss_pred             CCCCCEEEEEE-CCEEEee
Confidence            99999999996 9998887

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=99.24  E-value=7.4e-12  Score=109.37  Aligned_cols=69  Identities=17%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++|||+||++||++|+.+.|.|.+++++|.     ++.++.|.++.                        ..++..|+
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~-----~v~f~kVd~d~------------------------~~l~~~~~  182 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYP-----MVKFCKIKASN------------------------TGAGDRFS  182 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCT-----TSEEEEEEHHH------------------------HCCTTSSC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC-----CCEEEEEeCCc------------------------HHHHHHCC
Confidence            47999999999999999999999999999985     26666665542                        23567899


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus       183 I~~~PTll~~-~~G~~v~~  200 (245)
T 1a0r_P          183 SDVLPTLLVY-KGGELLSN  200 (245)
T ss_dssp             TTTCSEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCEEEEE
Confidence            9999999999 69998866

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=99.23  E-value=1.2e-11  Score=99.38  Aligned_cols=60  Identities=8%  Similarity=0.205  Sum_probs=51.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||++|+.+.|.|+++++++...   +.++.|++|.+.                    +++++|+|.++
T Consensus        22 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~--------------------~~~~~~~i~~~   78 (142)
T 1qgv_A           22 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP--------------------DFNKMYELYDP   78 (142)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC--------------------TTTTSSCSCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---eEEEEEccccCH--------------------HHHHHcCCCCC
Confidence            5899999999999999999999999999998654   778888877543                    47888999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        79 Pt~   81 (142)
T 1qgv_A           79 CTV   81 (142)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            964

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=6.1e-12  Score=100.44  Aligned_cols=76  Identities=22%  Similarity=0.393  Sum_probs=57.2

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEE  106 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (358)
                      +...+++ +...-.++|+++|+||++||++|+.+.|.|.++++++...+.++.++.|+++.+.                 
T Consensus        19 v~~l~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------   81 (140)
T 2dj1_A           19 VWVLNDGNFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSAS-----------------   81 (140)
T ss_dssp             EEECCTTTHHHHHTTCSEEEEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCH-----------------
T ss_pred             CEEcChHhHHHHHhcCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccH-----------------
Confidence            3444454 4433346899999999999999999999999999999887655777777766554                 


Q ss_pred             ccceeeeccccCCCCcc
Q 018266          107 DLIGLIEDYGADAYPFT  123 (358)
Q Consensus       107 ~~~~l~~~~gi~~~P~~  123 (358)
                         .++++|+|.++|+.
T Consensus        82 ---~~~~~~~v~~~Pt~   95 (140)
T 2dj1_A           82 ---MLASKFDVSGYPTI   95 (140)
T ss_dssp             ---HHHHHTTCCSSSEE
T ss_pred             ---HHHHHCCCCccCeE
Confidence               45677777777753

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=99.23  E-value=5.6e-12  Score=102.08  Aligned_cols=61  Identities=15%  Similarity=0.191  Sum_probs=50.2

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+|+|+|||+||++|+.++|.|+++++++.+.   +.++.|++|...                    +++++|+|.+
T Consensus        21 ~~~k~vlv~F~a~WC~~C~~~~p~l~~l~~~~~~~---~~~~~vd~d~~~--------------------~l~~~~~v~~   77 (149)
T 3gix_A           21 TAEKVLVLRFGRDEDPVCLQLDDILSKTSSDLSKM---AAIYLVDVDQTA--------------------VYTQYFDISY   77 (149)
T ss_dssp             CCSSEEEEEEECTTSHHHHHHHHHHHHHHTTTTTT---EEEEEEETTTCC--------------------HHHHHTTCCS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCcCH--------------------HHHHHcCCCc
Confidence            35899999999999999999999999999888654   778888887654                    4677777777


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        78 ~Pt~   81 (149)
T 3gix_A           78 IPST   81 (149)
T ss_dssp             SSEE
T ss_pred             cCeE
Confidence            7753

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.23  E-value=1.9e-11  Score=96.64  Aligned_cols=76  Identities=18%  Similarity=0.313  Sum_probs=55.4

Q ss_pred             ccCCCCc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccc
Q 018266           28 LLSRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIE  105 (358)
Q Consensus        28 l~~~~g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (358)
                      +...+++ +...-. ++|+++|+||++||++|+.+.|.|.++++++...+ .+.++.++++.+                 
T Consensus         9 v~~l~~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~-~~~~~~vd~~~~-----------------   70 (133)
T 2dj3_A            9 VKVVVGKTFDAIVMDPKKDVLIEFYAPWCGHCKQLEPIYTSLGKKYKGQK-DLVIAKMDATAN-----------------   70 (133)
T ss_dssp             SEECCTTTCCCCCTCTTSEEEEEECCTTCSHHHHHHHHHHHHHHHHTTSS-SEEEEEECTTTS-----------------
T ss_pred             eEEEcCCCHHHHhccCCCcEEEEEECCCChhHHHHHHHHHHHHHHhcCCC-CEEEEEecCCcC-----------------
Confidence            4444444 433322 58999999999999999999999999999997532 255555555433                 


Q ss_pred             cccceeeeccccCCCCcch
Q 018266          106 EDLIGLIEDYGADAYPFTR  124 (358)
Q Consensus       106 ~~~~~l~~~~gi~~~P~~~  124 (358)
                         ..++++|+|.++|+..
T Consensus        71 ---~~~~~~~~v~~~Pt~~   86 (133)
T 2dj3_A           71 ---DITNDQYKVEGFPTIY   86 (133)
T ss_dssp             ---CCCCSSCCCSSSSEEE
T ss_pred             ---HHHHhhcCCCcCCEEE
Confidence               2577889999999753

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.23  E-value=1.1e-11  Score=105.53  Aligned_cols=70  Identities=29%  Similarity=0.351  Sum_probs=58.7

Q ss_pred             cCccc-ccCC--CC--c-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LLSR--QG--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~~~--~g--~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ..++| +.+.  +|  + +++++++||+++|+|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .+...++
T Consensus        11 ~aP~f~l~~~~~~g~~~~v~l~~~~gk~vvl~F~~~~~C~~C~~~~~~l~~l~~~~~~~~--v~vi~Is~D~-~~~~~~~   87 (202)
T 1uul_A           11 PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDS-EYSHLAW   87 (202)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHH
T ss_pred             cCCCcEeeeeecCCCccEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CEEEEEeCCC-HHHHHHH
Confidence            34556 6665  67  7 9999999999999999 9999999999999999999998766  9999999985 3344444

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.21  E-value=1e-12  Score=108.22  Aligned_cols=93  Identities=19%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             ccCccc-ccCCCCc-eecccC--CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           22 SEGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      .+.++| |.+.+|+ ++|+++  +||+++|.|| ++||++|+..+|.|.++++++++.+  ++++.|+.|. .+..+++.
T Consensus         9 ~~aPdF~l~~~~G~~v~Lsd~~~~Gk~vvl~f~~~~~cp~C~~e~~~l~~~~~~~~~~~--v~vv~is~d~-~~~~~~~~   85 (164)
T 4gqc_A            9 EKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDS-PWCLKKFK   85 (164)
T ss_dssp             SBCCCCEEEBTTSCEEEHHHHHHTSSCEEEEECSCTTCCEECSSCEESCCCGGGGGGSS--SEEEEEESSC-HHHHHHHH
T ss_pred             CCCcCcEeECCCCCEEEHHHHhcCCCEEEEEEeCCCCCCCcccchhhhhhhHHHhhccC--ceEEEecCCC-HHHHHHHH
Confidence            345677 9999999 999998  8999999998 9999999999999999999999887  8999999874 44555554


Q ss_pred             hhCC--Ccccccccceeeecccc
Q 018266           97 KSSD--GTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        97 ~~~~--~~~~~~~~~~l~~~~gi  117 (358)
                      ....  ..++.+...++++.||+
T Consensus        86 ~~~~~~fp~l~D~~~~v~~~ygv  108 (164)
T 4gqc_A           86 DENRLAFNLLSDYNREVIKLYNV  108 (164)
T ss_dssp             HHTTCCSEEEECTTSHHHHHTTC
T ss_pred             HhcCcccceeecCchHHHHHcCC
Confidence            4422  24455555566777776

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=99.21  E-value=1.4e-11  Score=93.19  Aligned_cols=59  Identities=15%  Similarity=0.260  Sum_probs=43.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+|||+||++|+.+.|.+.++++++.    ++.++.|++|.+.                    .++++|+|.++
T Consensus        17 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~vd~~~~~--------------------~l~~~~~v~~~   72 (105)
T 4euy_A           17 EQQLVLLFIKTENCGVCDVMLRKVNYVLENYN----YVEKIEILLQDMQ--------------------EIAGRYAVFTG   72 (105)
T ss_dssp             CSSEEEEEEEESSCHHHHHHHHHHHHHHHTCT----TEEEEEEEECCC-----------------------------CCC
T ss_pred             cCCCEEEEEeCCCCcchHHHHHHHHHHHHHcC----CceEEEEECCCCH--------------------HHHHhcCCCCC
Confidence            58999999999999999999999999999873    3888888888655                    57888888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (105)
T 4euy_A           73 PTV   75 (105)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            864

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.21  E-value=3e-11  Score=99.81  Aligned_cols=87  Identities=16%  Similarity=0.273  Sum_probs=64.2

Q ss_pred             CCceecCCCceeee--cccCCcEEEEEEec-------cCCcccHhhHHHHHHHHHHhhcc-cCCceEEEEEeCCCCHHHH
Q 018266          152 RDYVLSRDHRKITV--SELAGKTIGLYFGA-------HWCPPCRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRDHKEF  221 (358)
Q Consensus       152 p~f~l~~~g~~~~l--~~~~~k~vlv~F~a-------~wC~~C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~~~~~  221 (358)
                      ++..+.++...+.-  ..-++.+|||+|||       .||++|+.+.|.|++++++|... .+.++.++-|.+|..    
T Consensus        17 ~~~vi~lt~~nF~~~v~~~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~----   92 (178)
T 3ga4_A           17 DTGVITVTADNYPLLSRGVPGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEV----   92 (178)
T ss_dssp             TTSEEECCTTTHHHHTTCCTTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTC----
T ss_pred             cCCCEECCHHHHHHHHcccCCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccC----
Confidence            34444555554442  12245689999999       49999999999999999998621 113567777777764    


Q ss_pred             HHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCC
Q 018266          222 DLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD  261 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~  261 (358)
                                         ..++.+|+|+++||+++|.+.
T Consensus        93 -------------------~~la~~~~I~siPtl~~F~~g  113 (178)
T 3ga4_A           93 -------------------PQLVKDLKLQNVPHLVVYPPA  113 (178)
T ss_dssp             -------------------HHHHHHTTCCSSCEEEEECCC
T ss_pred             -------------------HHHHHHcCCCCCCEEEEEcCC
Confidence                               789999999999999999443

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.21  E-value=2.1e-11  Score=101.43  Aligned_cols=61  Identities=18%  Similarity=0.175  Sum_probs=54.0

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| +.+.+|+ +++++++||+++|.||++| |++|+..+|.|.+++++   .+  ++++.|+.|..
T Consensus        23 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~---~~--v~vv~Is~D~~   86 (175)
T 1xvq_A           23 PAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA---SG--ATVLCVSKDLP   86 (175)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH---TT--CEEEEEESSCH
T ss_pred             cCCCeEEECCCCCEEeHHHcCCCEEEEEEEeCCCCchHHHHHHHHHHHHhh---cC--CEEEEEECCCH
Confidence            34456 8899999 9999999999999999999 99999999999999987   33  89999999853

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=99.21  E-value=2.8e-11  Score=91.48  Aligned_cols=72  Identities=13%  Similarity=0.174  Sum_probs=61.3

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+|+|+|||+|+...|.|++++++      .++.++.|.+|...                   +..+.++++|+|
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~------~~v~~~~vdVde~r-------------------~~Sn~IA~~~~V   78 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE------RDMDGYYLIVQQER-------------------DLSDYIAKKTNV   78 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH------HTCCEEEEEGGGGH-------------------HHHHHHHHHHTC
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc------CCceEEEEEeecCc-------------------hhhHHHHHHhCC
Confidence            68999999999999999999999998874      34778888888653                   113569999999


Q ss_pred             C-ceeeEEEECCCCcEEec
Q 018266          250 K-GIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~-~~P~~~lid~~G~v~~~  267 (358)
                      + ..|++++| ++|+++.+
T Consensus        79 ~h~sPq~il~-k~G~~v~~   96 (112)
T 3iv4_A           79 KHESPQAFYF-VNGEMVWN   96 (112)
T ss_dssp             CCCSSEEEEE-ETTEEEEE
T ss_pred             ccCCCeEEEE-ECCEEEEE
Confidence            9 59999999 99999876

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.21  E-value=1.7e-11  Score=103.01  Aligned_cols=72  Identities=18%  Similarity=0.208  Sum_probs=59.7

Q ss_pred             cCccc-ccCC-CC--c-eecccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           23 EGVEF-LLSR-QG--K-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        23 ~~~~~-l~~~-~g--~-v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      ..++| |.+. +|  + +++++++||+|+|.||+ .||++|+..+|.|.++++++++.+  ++++.|++|. .+...+|.
T Consensus         6 ~aP~f~l~~~~~G~~~~v~l~~~~Gk~vvl~F~~~~~Cp~C~~e~~~l~~~~~~~~~~~--v~vv~Is~d~-~~~~~~~~   82 (186)
T 1n8j_A            6 KIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFTHKAWH   82 (186)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHH
T ss_pred             cCCCcEeecccCCcceEEEHHHHCCCeEEEEEECCCCCCccHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHHH
Confidence            34566 7777 58  8 99999999999999995 999999999999999999998876  9999999985 33444443


Q ss_pred             h
Q 018266           97 K   97 (358)
Q Consensus        97 ~   97 (358)
                      .
T Consensus        83 ~   83 (186)
T 1n8j_A           83 S   83 (186)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=99.20  E-value=2.7e-11  Score=103.07  Aligned_cols=74  Identities=23%  Similarity=0.341  Sum_probs=62.4

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcC-CCceEEEEEEecC---ChhHHHHHHh
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTR-GTELEVIFISFDH---DENGFEEHFK   97 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~-~~~~~iv~i~~d~---~~~~~~~~~~   97 (358)
                      ++| |.+.+|+ +++++++||+++|.||++||++ |+..+|.|.++++++.+. +.++++++|++|.   +.+..++|..
T Consensus        22 p~f~l~d~~G~~v~l~~~~Gk~vlv~F~at~C~~vC~~~~~~l~~l~~~~~~~~~~~v~vv~Is~D~~~d~~~~~~~~~~  101 (200)
T 2b7k_A           22 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS  101 (200)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCEEEEcCCCCEEeHHHcCCCEEEEEEECCCCcchhHHHHHHHHHHHHHHHHhhCCceEEEEEECCCCCCCHHHHHHHHH
Confidence            566 8899999 9999999999999999999998 999999999999999764 3349999999985   4555555544


Q ss_pred             h
Q 018266           98 S   98 (358)
Q Consensus        98 ~   98 (358)
                      .
T Consensus       102 ~  102 (200)
T 2b7k_A          102 D  102 (200)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=99.20  E-value=1.7e-11  Score=95.97  Aligned_cols=72  Identities=17%  Similarity=0.293  Sum_probs=54.5

Q ss_pred             CCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccc
Q 018266           31 RQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLI  109 (358)
Q Consensus        31 ~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~  109 (358)
                      .+|. ......+||+++|+||++||++|+.+.|.|.+++++++.   ++.++.|+++.++.                  .
T Consensus        14 ~~~~~~~~~~~~~k~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~---~v~~~~v~~~~d~~------------------~   72 (126)
T 2l57_A           14 INVVENLEEAKEGIPTIIMFKTDTCPYCVEMQKELSYVSKEREG---KFNIYYARLEEEKN------------------I   72 (126)
T ss_dssp             CSEESSTTTCCSSSCEEEEEECSSCHHHHHHHHHHHHHHHHSSS---SCEEEEEETTSSHH------------------H
T ss_pred             cchhHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHhcC---CeEEEEEeCCCCch------------------H
Confidence            3344 335566799999999999999999999999999998863   28888888333332                  2


Q ss_pred             eeeeccccCCCCcc
Q 018266          110 GLIEDYGADAYPFT  123 (358)
Q Consensus       110 ~l~~~~gi~~~P~~  123 (358)
                      .++++|++.++|+.
T Consensus        73 ~~~~~~~v~~~Pt~   86 (126)
T 2l57_A           73 DLAYKYDANIVPTT   86 (126)
T ss_dssp             HHHHHTTCCSSSEE
T ss_pred             HHHHHcCCcceeEE
Confidence            46777888888853

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.20  E-value=1.8e-11  Score=105.12  Aligned_cols=70  Identities=19%  Similarity=0.198  Sum_probs=58.1

Q ss_pred             cCccc-ccC---CCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LLS---RQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~~---~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +.++| +.+   .+|+ +++++++||+++|+|| ++||++|+..+|.|.++++++++.+  ++|+.|++|. .+...++
T Consensus        24 ~aP~f~l~~~~~~~g~~v~l~d~~Gk~vvl~F~pat~C~~C~~e~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~~   99 (211)
T 2pn8_A           24 PAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDS-QFTHLAW   99 (211)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSC-HHHHHHH
T ss_pred             cCCCeEeecccCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHH
Confidence            44556 554   3567 9999999999999999 9999999999999999999998766  9999999985 3344444

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.20  E-value=2e-11  Score=103.68  Aligned_cols=70  Identities=21%  Similarity=0.269  Sum_probs=58.6

Q ss_pred             Cccc-ccCC--CC----ceecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHH
Q 018266           24 GVEF-LLSR--QG----KVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE   94 (358)
Q Consensus        24 ~~~~-l~~~--~g----~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~   94 (358)
                      .++| +.+.  +|    .++++++ +||+++|.|| ++||++|+..+|.|.++++++.+.+  ++++.|++|. .+...+
T Consensus         7 ~P~f~l~~~~~~G~~~~~v~l~~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~l~~~~~~~~--v~vv~Is~d~-~~~~~~   83 (198)
T 1zof_A            7 APDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDS-EQVHFA   83 (198)
T ss_dssp             CCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSC-HHHHHH
T ss_pred             CCceEeecccCCCcccceEEHHHHhCCCcEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHH
Confidence            3455 6666  78    4999999 9999999999 9999999999999999999998876  9999999985 444444


Q ss_pred             HH
Q 018266           95 HF   96 (358)
Q Consensus        95 ~~   96 (358)
                      +.
T Consensus        84 ~~   85 (198)
T 1zof_A           84 WK   85 (198)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=99.20  E-value=3.1e-11  Score=99.94  Aligned_cols=70  Identities=27%  Similarity=0.436  Sum_probs=60.8

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCCh-hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC--ChhHHHHH
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--DENGFEEH   95 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~--~~~~~~~~   95 (358)
                      +| |++.+|+ +++++++||+++|.||++||+ .|...+|.|.++++++.+.+.+++++.|++|.  +.+..++|
T Consensus        10 ~f~l~d~~G~~v~l~~~~Gk~vll~F~~t~C~~~C~~~~~~l~~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~   84 (170)
T 3me7_A           10 DITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLGTPGKDFWVITFTFDPKDTLEDIKRF   84 (170)
T ss_dssp             TCEEEETTCCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHTTHHHHCCBTTTBEEEEEECCTTCCHHHHHHH
T ss_pred             CeEEEcCCcCEEchHHhCCCEEEEEEECCCCCchhHHHHHHHHHHHHHhhhcCCceEEEEEECCCCCCHHHHHHH
Confidence            55 8899999 999999999999999999998 59999999999999998766679999999984  34445555

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.20  E-value=1.7e-11  Score=100.98  Aligned_cols=62  Identities=19%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCC-ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| +.+.+|+ +++++++||+++|.||++| |++|+..+|.+.++++++  .+  ++++.|+.|..
T Consensus        23 ~~p~f~l~~~~G~~~~l~~~~gk~~vl~F~~~~~C~~C~~~~~~l~~l~~~~--~~--~~vv~is~d~~   87 (167)
T 2jsy_A           23 QAPDFTVLTNSLEEKSLADMKGKVTIISVIPSIDTGVCDAQTRRFNEEAAKL--GD--VNVYTISADLP   87 (167)
T ss_dssp             CCCCCEEEBTTCCEEEHHHHTTSCEEEEECSCSTTSHHHHTHHHHHHHHHHH--SS--CEEEEEECSSG
T ss_pred             cCCceEEECCCCCEeeHHHhCCCeEEEEEecCCCCCchHHHHHHHHHHHHHc--CC--CEEEEEECCCH
Confidence            33456 8899999 9999999999999999999 999999999999999999  33  89999999853

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.82  E-value=1.6e-12  Score=98.14  Aligned_cols=71  Identities=28%  Similarity=0.568  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|.||++||++|+.+.|.+.+++++++    .++.++.|++|.                       ...++++|+
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~----~~~~~~~v~~~~-----------------------~~~~~~~~~   70 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYE----GKVKVVKVNVDE-----------------------NPNTAAQYG   70 (106)
Confidence            46899999999999999999999999998886    356666666654                       357889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        71 v~~~Pt~~~~-~~g~~~~~   88 (106)
T 2yj7_A           71 IRSIPTLLLF-KNGQVVDR   88 (106)
Confidence            9999999999 88988765

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.19  E-value=2.4e-11  Score=100.77  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=70.5

Q ss_pred             ccCccc-cc-CCCCc-eeccc-CCCCEEEEEEe-CCCChhhh-hhhHHHHHHHHHHhcCCCceEEEE-EEecCChhHHHH
Q 018266           22 SEGVEF-LL-SRQGK-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTELEVIF-ISFDHDENGFEE   94 (358)
Q Consensus        22 ~~~~~~-l~-~~~g~-v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~~~~~~~~l~~~~~~~~iv~-i~~d~~~~~~~~   94 (358)
                      .+.++| |. +.+|+ ++|++ ++||+|+|.|| +.||++|+ ..+|.|.++++++++.|  ++++. |+.|. ....++
T Consensus        19 ~~aPdf~l~~~~~g~~v~L~d~~~gk~vvL~f~pa~wcp~C~~~e~p~l~~~~~~~~~~g--v~vv~~iS~D~-~~~~~~   95 (173)
T 3mng_A           19 DAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVND-AFVTGE   95 (173)
T ss_dssp             CBCCCCEEECSSTTCEEEHHHHTTTSEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-HHHHHH
T ss_pred             CCCCCeEeeeCCCCCEEEhHHHhCCCcEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC--CEEEEEEcCCC-HHHHHH
Confidence            445667 77 89999 99999 59997766665 99999999 59999999999999887  88996 88884 445555


Q ss_pred             HHhhCC----CcccccccceeeeccccC
Q 018266           95 HFKSSD----GTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        95 ~~~~~~----~~~~~~~~~~l~~~~gi~  118 (358)
                      +.....    ..++.+...++++.||+.
T Consensus        96 f~~~~~~~~~fp~l~D~~~~va~~yGv~  123 (173)
T 3mng_A           96 WGRAHKAEGKVRLLADPTGAFGKETDLL  123 (173)
T ss_dssp             HHHHTTCTTTCEEEECTTCHHHHHHTCB
T ss_pred             HHHHhCCCCceEEEECCChHHHHHhCCC
Confidence            544421    345555555667777764

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.19  E-value=3.2e-11  Score=98.97  Aligned_cols=91  Identities=19%  Similarity=0.311  Sum_probs=67.4

Q ss_pred             Cccc-c--cCCCC--c-eeccc-CCCCEEEEEEe-CCCChhhh-hhhHHHHHHHHHHhcCCCceE-EEEEEecCChhHHH
Q 018266           24 GVEF-L--LSRQG--K-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFE   93 (358)
Q Consensus        24 ~~~~-l--~~~~g--~-v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~~~~~~~~l~~~~~~~~-iv~i~~d~~~~~~~   93 (358)
                      .++| +  .+.+|  + +++++ ++||+++|.|| +.||++|+ ..+|.|.++++++++.+  ++ ++.|+.|. ....+
T Consensus        10 aP~f~l~~~~~~G~~~~~~l~~~~~gk~vvl~f~~~~~c~~C~~~e~~~l~~~~~~~~~~~--v~~vv~Is~d~-~~~~~   86 (162)
T 1tp9_A           10 LPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKG--VTEILCISVND-PFVMK   86 (162)
T ss_dssp             CCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCCEEEEESSC-HHHHH
T ss_pred             CCCeEEEeecCCCCceeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEECCC-HHHHH
Confidence            3455 4  38899  8 99999 89999999999 89999999 99999999999998876  89 99999984 44455


Q ss_pred             HHHhhCC----Ccccccccceeeecccc
Q 018266           94 EHFKSSD----GTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        94 ~~~~~~~----~~~~~~~~~~l~~~~gi  117 (358)
                      ++..+..    ..++.+....+++.||+
T Consensus        87 ~~~~~~~~~~~~~~l~D~~~~~~~~~gv  114 (162)
T 1tp9_A           87 AWAKSYPENKHVKFLADGSATYTHALGL  114 (162)
T ss_dssp             HHHHTCTTCSSEEEEECTTSHHHHHTTC
T ss_pred             HHHHhcCCCCCeEEEECCCchHHHHcCc
Confidence            5543321    12333333445555554

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.19  E-value=4.1e-13  Score=102.16  Aligned_cols=74  Identities=18%  Similarity=0.459  Sum_probs=54.0

Q ss_pred             ceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhH
Q 018266          161 RKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRAR  240 (358)
Q Consensus       161 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      +.+++++..+|+++|.|||+||++|+.+.|.|.+++++++          .|.++.+..                 .+..
T Consensus         3 ~~~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~----------~v~~~~~~~-----------------~~~~   55 (106)
T 3kp8_A            3 LAVGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----------YVECSPNGP-----------------GTPQ   55 (106)
T ss_dssp             HHHHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC----------EEESCTTCT-----------------TSCC
T ss_pred             HhhHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC----------EEEEecccc-----------------cchh
Confidence            3456667778899999999999999999999988875553          334442100                 0013


Q ss_pred             HHHHHHcCCCceeeEEEECCCCcE
Q 018266          241 QDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       241 ~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                      ..++++|+|+++||+++   +|+.
T Consensus        56 ~~l~~~~~V~~~PT~~i---~G~~   76 (106)
T 3kp8_A           56 AQECTEAGITSYPTWII---NGRT   76 (106)
T ss_dssp             CHHHHHTTCCSSSEEEE---TTEE
T ss_pred             HHHHHHcCCeEeCEEEE---CCEE
Confidence            67899999999999776   7764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=99.19  E-value=6.5e-12  Score=97.10  Aligned_cols=62  Identities=21%  Similarity=0.445  Sum_probs=50.8

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++.++|+++|+||++||++|+.+.|.|+++++++.+    +.++.|++|.+.                    .++++|+|
T Consensus        27 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~vd~d~~~--------------------~l~~~~~v   82 (116)
T 3qfa_C           27 DAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ--------------------DVASECEV   82 (116)
T ss_dssp             HHHTTSCEEEEEECTTCHHHHHHHHHHHHHHTTCTT----SEEEEEETTTTH--------------------HHHHHTTC
T ss_pred             HhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCH--------------------HHHHHcCC
Confidence            334799999999999999999999999999887643    778888887655                    46778888


Q ss_pred             CCCCcc
Q 018266          118 DAYPFT  123 (358)
Q Consensus       118 ~~~P~~  123 (358)
                      .++|+.
T Consensus        83 ~~~Pt~   88 (116)
T 3qfa_C           83 KSMPTF   88 (116)
T ss_dssp             CSSSEE
T ss_pred             ccccEE
Confidence            888853

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.18  E-value=3.2e-11  Score=101.41  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=52.2

Q ss_pred             ceecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           34 KVPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        34 ~v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      .+++++++||+++|+|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .+...++.
T Consensus        23 ~~~l~~~~gk~vvl~F~~a~~C~~C~~~~~~l~~~~~~~~~~~--v~vv~vs~d~-~~~~~~~~   83 (187)
T 1we0_A           23 EVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HFVHKAWH   83 (187)
T ss_dssp             EEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHHH
T ss_pred             EecHHHHCCCCEEEEEECCCCCcchHHHHHHHHHHHHHHHHcC--CEEEEEECCC-HHHHHHHH
Confidence            39999999999999999 9999999999999999999998866  9999999986 33444443

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.18  E-value=1.8e-11  Score=100.88  Aligned_cols=67  Identities=18%  Similarity=0.091  Sum_probs=56.3

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +.++| |.+.+|+ +++++++||+++|.|| +.||++|+..+|.|.+++++   .+  ++++.|+.|. .+...+|
T Consensus        25 ~aP~f~l~~~~G~~~~l~~~~Gk~vvl~f~~~~~c~~C~~~~~~l~~~~~~---~~--~~vv~is~d~-~~~~~~~   94 (166)
T 3p7x_A           25 FAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSDASK---EE--GIVLTISADL-PFAQKRW   94 (166)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSCEEEEECSCTTSHHHHHHHHHHHHHSCT---TT--SEEEEEESSC-HHHHHHH
T ss_pred             CCCCeEEEcCCCCEEeHHHhCCCcEEEEEECCCCCCccHHHHHHHHHHhhc---CC--CEEEEEECCC-HHHHHHH
Confidence            44566 9999999 9999999999999999 78999999999999998876   33  8999999885 4444444

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=99.18  E-value=2.6e-11  Score=92.95  Aligned_cols=60  Identities=25%  Similarity=0.485  Sum_probs=51.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++++.+.   +.++.|++|.+.                    +++++|++.++
T Consensus        16 ~~~~~lv~f~a~wC~~C~~~~~~l~~~~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~v~~~   72 (112)
T 2voc_A           16 SEGVVLADFWAPWCGPSKMIAPVLEELDQEMGDK---LKIVKIDVDENQ--------------------ETAGKYGVMSI   72 (112)
T ss_dssp             SSSEEEEEEECTTBGGGGGHHHHHHHHHHHHTTT---CEEEEEETTTCC--------------------SHHHHTTCCSB
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH--------------------HHHHHcCCCcc
Confidence            6899999999999999999999999999998753   788888887654                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (112)
T 2voc_A           73 PTL   75 (112)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            864

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.17  E-value=2.9e-11  Score=104.50  Aligned_cols=70  Identities=21%  Similarity=0.223  Sum_probs=58.2

Q ss_pred             cCccc-cc---CCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LL---SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~---~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ..++| +.   +.+|. +++++++||+++|+|| ++||++|+..+|.|.++++++++.+  ++++.|++|. .....++
T Consensus        32 ~aP~f~l~~~~~~~g~~v~l~d~~Gk~vll~F~pa~~Cp~C~~~~~~l~~l~~~~~~~~--v~vv~Is~D~-~~~~~~~  107 (220)
T 1zye_A           32 HAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDS-HFSHLAW  107 (220)
T ss_dssp             BCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCCcEEEeeeCCCCcEEEHHHhCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCC-HHHHHHH
Confidence            34455 43   46788 9999999999999999 9999999999999999999998876  9999999985 3333444

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.17  E-value=3.6e-11  Score=98.72  Aligned_cols=68  Identities=19%  Similarity=0.175  Sum_probs=57.3

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ..++| +.+.+|+ +++++++||+++|.||+ .||++|+..+|.|.++++++  .+  ++++.|+.|. .+...++
T Consensus        21 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~F~~~~~c~~C~~~~~~l~~~~~~~--~~--v~vv~is~d~-~~~~~~~   91 (163)
T 1psq_A           21 KALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL--DN--TVVLTVSMDL-PFAQKRW   91 (163)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHH
T ss_pred             CCCCEEEEcCCCcEeeHHHhCCCEEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--cEEEEEECCC-HHHHHHH
Confidence            34556 8899999 99999999999999995 99999999999999999988  33  9999999985 3334444

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.17  E-value=1.4e-11  Score=93.45  Aligned_cols=60  Identities=17%  Similarity=0.413  Sum_probs=50.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++.+.+.   +.++.+++|.+.                    .++++|++.+
T Consensus        19 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~i~~   75 (109)
T 3tco_A           19 RNNKLVLVDCWAEWCAPCHLYEPIYKKVAEKYKGK---AVFGRLNVDENQ--------------------KIADKYSVLN   75 (109)
T ss_dssp             HHSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH--------------------HHHHHTTCCS
T ss_pred             hcCCeEEEEEECCCCHHHHhhhHHHHHHHHHhCCC---ceEEEEccccCH--------------------HHHHhcCccc
Confidence            35899999999999999999999999999998764   778888888665                    4577778888


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        76 ~Pt   78 (109)
T 3tco_A           76 IPT   78 (109)
T ss_dssp             SSE
T ss_pred             CCE
Confidence            885

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=99.16  E-value=1.8e-11  Score=93.39  Aligned_cols=64  Identities=19%  Similarity=0.397  Sum_probs=51.6

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      +...-.+||+++|+||++||++|+.+.|.|+++++++.+    +.++.|++|.+.                    .++++
T Consensus        17 f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~----~~~~~vd~~~~~--------------------~l~~~   72 (109)
T 3f3q_A           17 FDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQ----ADFYKLDVDELG--------------------DVAQK   72 (109)
T ss_dssp             HHHHTTSSSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH--------------------HHHHH
T ss_pred             HHHHHhcCCEEEEEEECCcCHhHHHHHHHHHHHHHHCCC----CEEEEEECCCCH--------------------HHHHH
Confidence            333334589999999999999999999999999998743    678888887665                    46777


Q ss_pred             cccCCCCc
Q 018266          115 YGADAYPF  122 (358)
Q Consensus       115 ~gi~~~P~  122 (358)
                      |+|.++|+
T Consensus        73 ~~v~~~Pt   80 (109)
T 3f3q_A           73 NEVSAMPT   80 (109)
T ss_dssp             TTCCSSSE
T ss_pred             cCCCccCE
Confidence            88888885

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=99.16  E-value=5.1e-12  Score=99.43  Aligned_cols=70  Identities=26%  Similarity=0.558  Sum_probs=59.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.++.++++     ++.++.|++|..                       ..++++|+
T Consensus        35 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~-----~v~~~~v~~~~~-----------------------~~~~~~~~   86 (130)
T 1wmj_A           35 AGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP-----GAVFLKVDVDEL-----------------------KEVAEKYN   86 (130)
T ss_dssp             TTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT-----TBCCEECCTTTS-----------------------GGGHHHHT
T ss_pred             cCCEEEEEEECCCChhHHHHHHHHHHHHHHCC-----CCEEEEEeccch-----------------------HHHHHHcC
Confidence            57999999999999999999999999998874     366776766643                       46888999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++|+++++ ++|+++.+
T Consensus        87 v~~~Pt~~~~-~~g~~~~~  104 (130)
T 1wmj_A           87 VEAMPTFLFI-KDGAEADK  104 (130)
T ss_dssp             CCSSCCCCBC-TTTTCCBC
T ss_pred             CCccceEEEE-eCCeEEEE
Confidence            9999998888 88988765

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=99.16  E-value=9.4e-11  Score=109.86  Aligned_cols=86  Identities=20%  Similarity=0.285  Sum_probs=66.5

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhccc--CCceEEEEEeCCCCHHHHHHhhhcCCccccc
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTA--NHCFEVVLVSTDRDHKEFDLNHSIMPWLAIP  234 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~  234 (358)
                      .++++.+...--.+++++|.|||+||++|+.+.|.+.+++++++...  ..++.++.|.++..                 
T Consensus         9 ~l~~~~f~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~-----------------   71 (382)
T 2r2j_A            9 SLDTENIDEILNNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQH-----------------   71 (382)
T ss_dssp             BCCTTTHHHHHHHCSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTC-----------------
T ss_pred             ECCHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCcc-----------------
Confidence            44444443222247899999999999999999999999999986310  24577888877754                 


Q ss_pred             cCchhHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          235 YEDRARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       235 ~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                            ..++++|+|+++||++++ ++|+++.
T Consensus        72 ------~~l~~~~~v~~~Pt~~~f-~~G~~~~   96 (382)
T 2r2j_A           72 ------SDIAQRYRISKYPTLKLF-RNGMMMK   96 (382)
T ss_dssp             ------HHHHHHTTCCEESEEEEE-ETTEEEE
T ss_pred             ------HHHHHhcCCCcCCEEEEE-eCCcEee
Confidence                  689999999999999999 7888764

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.16  E-value=5e-11  Score=98.65  Aligned_cols=90  Identities=14%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSS   99 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~   99 (358)
                      +.++| +.+.+|+ +++++++||+++|.|| +.||++|+..+|.|.++++++  .+  ++++.|+.|. .+..+++..+.
T Consensus        26 ~~P~f~l~~~~G~~~~l~~~~gk~vvl~f~~~~~C~~C~~~~~~l~~~~~~~--~~--v~vv~Is~d~-~~~~~~~~~~~  100 (171)
T 2yzh_A           26 RAPEAVVVTKDLQEKIVGGAKDVVQVIITVPSLDTPVCETETKKFNEIMAGM--EG--VDVTVVSMDL-PFAQKRFCESF  100 (171)
T ss_dssp             BCCCEEEEETTSCEEEESSCCSSEEEEEECSCTTSHHHHHHHHHHHHHTTTC--TT--EEEEEEESSC-HHHHHHHHHHT
T ss_pred             cCCceEEECCCCCEeeHHHhCCCeEEEEEECCCCCCchHHHHHHHHHHHHHc--CC--ceEEEEeCCC-HHHHHHHHHHc
Confidence            33456 8899999 9999999999999999 899999999999999999988  33  9999999985 44445554442


Q ss_pred             ---CCccccc-ccceeeeccccC
Q 018266          100 ---DGTLIEE-DLIGLIEDYGAD  118 (358)
Q Consensus       100 ---~~~~~~~-~~~~l~~~~gi~  118 (358)
                         ...++.+ ....+ +.||+.
T Consensus       101 ~~~~~~~l~D~~~~~~-~~~gv~  122 (171)
T 2yzh_A          101 NIQNVTVASDFRYRDM-EKYGVL  122 (171)
T ss_dssp             TCCSSEEEECTTTCGG-GGGTCB
T ss_pred             CCCCeEEeecCccCcH-HHhCCE
Confidence               2233444 33445 666654

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.15  E-value=5.3e-11  Score=104.13  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=56.4

Q ss_pred             ccCccc-cc---CCCCc-eecccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LL---SRQGK-VPLSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~---~~~g~-v~l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .+.++| +.   +.+|+ ++|++++||+++|.||+ .||++|+..+|.|.++++++++.+  ++|+.|++|..
T Consensus        52 ~~aPdF~l~~~~d~~G~~vsLsd~~Gk~vvL~F~~~~~cp~C~~el~~l~~l~~~~~~~g--v~vv~Is~D~~  122 (240)
T 3qpm_A           52 KPAPQWEGTAVINGEFKELKLSDYRGKYLVFFFYPLDFTFVCPTEIIAFSDRVHEFRAIN--TEVVACSVDSQ  122 (240)
T ss_dssp             SBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCCcEeeeeeCCCCcEEEHHHhCCCEEEEEEECCCCCCchHHHHHHHHHHHHHHHHCC--CEEEEEECCCH
Confidence            344566 33   55677 99999999999999998 999999999999999999999877  99999999853

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=99.15  E-value=2.2e-11  Score=104.85  Aligned_cols=69  Identities=17%  Similarity=0.202  Sum_probs=57.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++++|+|.||++||++|+.+.|.|.+++++|.     ++.++.|.++ .                       ..++..|+
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~-----~v~f~~vd~~-~-----------------------~~l~~~~~  169 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP-----MVKFCKIRAS-N-----------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT-----TSEEEEEEHH-H-----------------------HTCSTTSC
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC-----CeEEEEEECC-c-----------------------HHHHHHCC
Confidence            45899999999999999999999999988874     4667777655 1                       45677899


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus       170 i~~~PTl~~~-~~G~~v~~  187 (217)
T 2trc_P          170 SDVLPTLLVY-KGGELISN  187 (217)
T ss_dssp             GGGCSEEEEE-ETTEEEEE
T ss_pred             CCCCCEEEEE-ECCEEEEE
Confidence            9999999999 69988765

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=99.15  E-value=3.5e-11  Score=90.85  Aligned_cols=60  Identities=20%  Similarity=0.358  Sum_probs=51.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.+.++++.+.+.   +.++.+++|.+.                    +++++|++.++
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~~   74 (106)
T 3die_A           18 ESGVQLVDFWATACGPCKMIAPVLEELAADYEGK---ADILKLDVDENP--------------------STAAKYEVMSI   74 (106)
T ss_dssp             CSSEEEEEEECSBCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCSB
T ss_pred             cCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---cEEEEEECCcCH--------------------HHHHhCCCccc
Confidence            7899999999999999999999999999998764   788888888765                    35677788888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (106)
T 3die_A           75 PTL   77 (106)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            853

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=4.2e-11  Score=94.51  Aligned_cols=50  Identities=14%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcC-CCceEEEEEEecCChh
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTR-GTELEVIFISFDHDEN   90 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~-~~~~~iv~i~~d~~~~   90 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++... ...+.++.|+++.+..
T Consensus        24 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~   74 (133)
T 1x5d_A           24 SEDVWMVEFYAPWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV   74 (133)
T ss_dssp             SSSEEEEEEECTTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH
T ss_pred             CCCeEEEEEECCCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH
Confidence            4799999999999999999999999999999731 1127788887776543

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=99.15  E-value=1.3e-10  Score=82.41  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=52.0

Q ss_pred             EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCce
Q 018266          173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  252 (358)
Q Consensus       173 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~  252 (358)
                      ..|.||++||++|+.+.|.+.++.+++.    .++.++.|+   +                       ..++++|++.++
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~----~~~~~~~v~---~-----------------------~~~~~~~~v~~~   51 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK---E-----------------------MDQILEAGLTAL   51 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC---S-----------------------HHHHHHHTCSSS
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcC----CceEEEEec---C-----------------------HHHHHHCCCCcC
Confidence            3589999999999999999999999886    456666664   2                       567889999999


Q ss_pred             eeEEEECCCCcEEec
Q 018266          253 PALVLIGPDGKTIST  267 (358)
Q Consensus       253 P~~~lid~~G~v~~~  267 (358)
                      |++++   +|+++.+
T Consensus        52 Pt~~~---~G~~~~~   63 (77)
T 1ilo_A           52 PGLAV---DGELKIM   63 (77)
T ss_dssp             SCEEE---TTEEEEC
T ss_pred             CEEEE---CCEEEEc
Confidence            99998   8988766

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=99.15  E-value=2.7e-11  Score=97.77  Aligned_cols=72  Identities=14%  Similarity=0.382  Sum_probs=56.1

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEE  106 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (358)
                      ++..+++ +...-.++|+++|+||++||++|+.+.|.|+++++++...   +.++.|+++.+.                 
T Consensus        40 v~~l~~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-----------------   99 (148)
T 3p2a_A           40 VINATAETLDKLLQDDLPMVIDFWAPWCGPCRSFAPIFAETAAERAGK---VRFVKVNTEAEP-----------------   99 (148)
T ss_dssp             CEECCTTTHHHHTTCSSCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH-----------------
T ss_pred             ceecCHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHHHHHHHHcCCc---eEEEEEECcCCH-----------------
Confidence            4444554 4433367899999999999999999999999999998654   788888887665                 


Q ss_pred             ccceeeeccccCCCCc
Q 018266          107 DLIGLIEDYGADAYPF  122 (358)
Q Consensus       107 ~~~~l~~~~gi~~~P~  122 (358)
                         .++++|+|.++|+
T Consensus       100 ---~l~~~~~v~~~Pt  112 (148)
T 3p2a_A          100 ---ALSTRFRIRSIPT  112 (148)
T ss_dssp             ---HHHHHTTCCSSSE
T ss_pred             ---HHHHHCCCCccCE
Confidence               3567777777775

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=99.14  E-value=2.1e-11  Score=92.10  Aligned_cols=60  Identities=22%  Similarity=0.523  Sum_probs=50.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +||+++|+||++||++|+.+.|.|.++++.+.+.   +.++.+++|.+.                    +++++|++.++
T Consensus        16 ~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~--------------------~~~~~~~v~~~   72 (105)
T 1nsw_A           16 GDGPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP--------------------ETTSQFGIMSI   72 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHSTTT---CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---cEEEEEECcCCH--------------------HHHHHcCCccc
Confidence            5799999999999999999999999999988654   788888888665                    35677888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (105)
T 1nsw_A           73 PTL   75 (105)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            853

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.14  E-value=3e-11  Score=101.24  Aligned_cols=93  Identities=13%  Similarity=0.218  Sum_probs=68.6

Q ss_pred             cCccc-ccCC--CC-c-eeccc-CCCCEEEE-EEeCCCChhhhh-hhHHHHHHHHHHhcCCCceE-EEEEEecCChhHHH
Q 018266           23 EGVEF-LLSR--QG-K-VPLSS-CGGKTICL-FFSANWCRPCKT-FTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFE   93 (358)
Q Consensus        23 ~~~~~-l~~~--~g-~-v~l~~-~~gk~vlv-~F~a~wC~~C~~-~~p~~~~~~~~l~~~~~~~~-iv~i~~d~~~~~~~   93 (358)
                      ..++| |.+.  +| + ++|++ ++||.++| .||+.||++|+. .+|.|.++++++++.|  ++ |+.|+.|. ....+
T Consensus        31 ~aPdf~l~~~~~~G~~~v~L~d~~~Gk~vvL~f~~a~wcp~C~~~e~p~l~~~~~~~~~~g--v~~vv~Is~d~-~~~~~  107 (184)
T 3uma_A           31 KLPNATFKEKTADGPVEVTTELLFKGKRVVLFAVPGAFTPTCSLNHLPGYLENRDAILARG--VDDIAVVAVND-LHVMG  107 (184)
T ss_dssp             BCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESSC-HHHHH
T ss_pred             CCCCcEeecccCCCceEEeHHHHhCCCCEEEEEEcCCCCCCcCHHHHHHHHHHHHHHHHcC--CCEEEEEECCC-HHHHH
Confidence            44566 7776  89 8 99999 89996554 556999999999 7999999999999887  88 99999984 44445


Q ss_pred             HHHhhC--C--CcccccccceeeeccccC
Q 018266           94 EHFKSS--D--GTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        94 ~~~~~~--~--~~~~~~~~~~l~~~~gi~  118 (358)
                      ++..+.  .  ..++.+...++++.||+.
T Consensus       108 ~f~~~~~~~~~fp~l~D~~~~va~~yGv~  136 (184)
T 3uma_A          108 AWATHSGGMGKIHFLSDWNAAFTKAIGME  136 (184)
T ss_dssp             HHHHHHTCTTTSEEEECTTCHHHHHTTCE
T ss_pred             HHHHHhCCCCceEEEEcCchHHHHHcCCc
Confidence            554441  1  344555555666667664

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=99.14  E-value=2.9e-11  Score=92.52  Aligned_cols=61  Identities=23%  Similarity=0.545  Sum_probs=48.1

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .+||+++|+||++||++|+.+.|.|.+++++++..+  +.++.++++.+.                    +++++|++.+
T Consensus        19 ~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~vd~~~~~--------------------~~~~~~~v~~   76 (112)
T 3d6i_A           19 AGDKLIVLYFHTSWAEPCKALKQVFEAISNEPSNSN--VSFLSIDADENS--------------------EISELFEISA   76 (112)
T ss_dssp             TTTCCEEEEEECCC--CHHHHHHHHHHHHHCGGGTT--SEEEEEETTTCH--------------------HHHHHTTCCS
T ss_pred             cCCCEEEEEEECCCCHHHHHHHHHHHHHHHhcCCCC--EEEEEEecccCH--------------------HHHHHcCCCc
Confidence            348999999999999999999999999999875443  788888887665                    3567777777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        77 ~Pt   79 (112)
T 3d6i_A           77 VPY   79 (112)
T ss_dssp             SSE
T ss_pred             ccE
Confidence            775

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=99.14  E-value=5.5e-11  Score=93.56  Aligned_cols=61  Identities=28%  Similarity=0.520  Sum_probs=52.2

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++.+.   +.++.|++|.+.                    +++++|++.+
T Consensus        38 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~v~~   94 (128)
T 2o8v_B           38 KADGAILVDFWAEWCGPAKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRG   94 (128)
T ss_dssp             TCSSEEEEEEECSSCHHHHHTHHHHHHHHHHTTTT---EEEEEEETTTCC--------------------TTSGGGTCCS
T ss_pred             hcCCEEEEEEECCCCHHHHHHhHHHHHHHHHhcCC---eEEEEEECCCCH--------------------HHHHHcCCCc
Confidence            35899999999999999999999999999988653   788888877554                    5788999999


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        95 ~Pt~   98 (128)
T 2o8v_B           95 IPTL   98 (128)
T ss_dssp             SSEE
T ss_pred             cCEE
Confidence            9964

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=99.14  E-value=5.5e-11  Score=90.20  Aligned_cols=61  Identities=30%  Similarity=0.580  Sum_probs=50.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++...   +.++.++++.+.                    .++++|++.+
T Consensus        18 ~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~   74 (108)
T 2trx_A           18 KADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRG   74 (108)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT--------------------THHHHTTCCS
T ss_pred             hcCCeEEEEEECCCCHhHHHHHHHHHHHHHHhCCC---cEEEEEECCCCH--------------------HHHHHcCCcc
Confidence            35899999999999999999999999999988654   788888887654                    4677788888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        75 ~Pt~   78 (108)
T 2trx_A           75 IPTL   78 (108)
T ss_dssp             SSEE
T ss_pred             cCEE
Confidence            8853

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=99.14  E-value=4.2e-11  Score=91.30  Aligned_cols=60  Identities=20%  Similarity=0.452  Sum_probs=50.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.+.++++.+.++   +.++.++++.+.                    .++++|++.++
T Consensus        21 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~v~~~   77 (111)
T 3gnj_A           21 EGKACLVMFSRKNCHVCQKVTPVLEELRLNYEES---FGFYYVDVEEEK--------------------TLFQRFSLKGV   77 (111)
T ss_dssp             SCCCEEEEEECSSCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             cCCEEEEEEeCCCChhHHHHHHHHHHHHHHcCCc---eEEEEEECCcCh--------------------hHHHhcCCCcC
Confidence            5799999999999999999999999999998753   788888888665                    46777888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        78 Pt~   80 (111)
T 3gnj_A           78 PQI   80 (111)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            853

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.13  E-value=3.7e-11  Score=99.54  Aligned_cols=93  Identities=11%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             cCccc-ccCC----CC-----c-eecccC-CCC-EEEEEEeCCCChhhhhh-hHHHHHHHHHHhcCCCceE-EEEEEecC
Q 018266           23 EGVEF-LLSR----QG-----K-VPLSSC-GGK-TICLFFSANWCRPCKTF-TPQLVQLYDTLRTRGTELE-VIFISFDH   87 (358)
Q Consensus        23 ~~~~~-l~~~----~g-----~-v~l~~~-~gk-~vlv~F~a~wC~~C~~~-~p~~~~~~~~l~~~~~~~~-iv~i~~d~   87 (358)
                      +.++| +.+.    +|     + ++++++ +|| +|++.||+.||++|+.. +|.|.++++++++.|  ++ |+.|+.|.
T Consensus        12 ~aP~f~l~~~~~~~~G~~~~~~~v~l~~~~~gk~vvl~~~~a~wcp~C~~eh~p~l~~~~~~~~~~g--~~~vv~Is~d~   89 (171)
T 2pwj_A           12 AASNVSLQKARTWDEGVESKFSTTPVNDIFKDKKVVIFGLPGAYTGVCSSKHVPPYKHNIDKFKAKG--VDSVICVAIND   89 (171)
T ss_dssp             CSSSBCCCSCEECCCSSCTTCCCEEHHHHHTTSEEEEEECSCTTCTTHHHHTHHHHHHTHHHHHHTT--CSEEEEEESSC
T ss_pred             cCCCeEEecccccccCCccCcceEEHHHHhCCCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCC
Confidence            34556 6665    47     8 999996 996 67778899999999998 999999999998877  88 99999984


Q ss_pred             ChhHHHHHHhhCC----CcccccccceeeeccccC
Q 018266           88 DENGFEEHFKSSD----GTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        88 ~~~~~~~~~~~~~----~~~~~~~~~~l~~~~gi~  118 (358)
                       ....+++..+..    ..++.+....+++.||+.
T Consensus        90 -~~~~~~~~~~~~~~~~fp~l~D~~~~~~~~ygv~  123 (171)
T 2pwj_A           90 -PYTVNAWAEKIQAKDAIEFYGDFDGSFHKSLELT  123 (171)
T ss_dssp             -HHHHHHHHHHTTCTTTSEEEECTTCHHHHHHTCE
T ss_pred             -HHHHHHHHHHhCCCCceEEEECCccHHHHHhCCc
Confidence             445555544422    234444445556666653

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=99.13  E-value=8.2e-12  Score=98.33  Aligned_cols=83  Identities=19%  Similarity=0.418  Sum_probs=57.8

Q ss_pred             ccccCcccccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           20 LASEGVEFLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        20 l~~~~~~~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      ...++..+-..+-.+ +.++..+||+++|+||++||++|+.+.|.+   .++.+.++..   +.++.|+++.+..     
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~-----   75 (130)
T 2kuc_A            4 AQADGIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRH---FVNLKMDMEKGEG-----   75 (130)
T ss_dssp             CCCCCCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHH---SEEEEECSSSTTH-----
T ss_pred             cccCCCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcC---eEEEEEecCCcch-----
Confidence            333344442223334 777777899999999999999999999999   6777666543   5666666664222     


Q ss_pred             HhhCCCcccccccceeeeccccCCCCcc
Q 018266           96 FKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        96 ~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                                   ..++++|++.++|+.
T Consensus        76 -------------~~~~~~~~v~~~Pt~   90 (130)
T 2kuc_A           76 -------------VELRKKYGVHAYPTL   90 (130)
T ss_dssp             -------------HHHHHHTTCCSSCEE
T ss_pred             -------------HHHHHHcCCCCCCEE
Confidence                         256788888888853

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=99.13  E-value=4.2e-11  Score=98.89  Aligned_cols=72  Identities=32%  Similarity=0.512  Sum_probs=58.8

Q ss_pred             Cccc-ccCCCCceecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCC-CceEEEEEEecCC---hhHHHHH
Q 018266           24 GVEF-LLSRQGKVPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDHD---ENGFEEH   95 (358)
Q Consensus        24 ~~~~-l~~~~g~v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~-~~~~iv~i~~d~~---~~~~~~~   95 (358)
                      .++| +.+.+|.+++++++||+++|+||++||++ |+..+|.|.++++++++.+ .+++++.|++|.+   .+..+++
T Consensus        16 ~p~f~l~~~~g~~~l~~~~gk~vll~f~~~~C~~~C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~   93 (172)
T 2k6v_A           16 PVDFALEGPQGPVRLSQFQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRY   93 (172)
T ss_dssp             ECCCEEECSSSEEEGGGSTTSEEEEEEECTTCSSHHHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHH
T ss_pred             CCCeEEEcCCCCCcHHHhCCCEEEEEEECCCCcchhHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHH
Confidence            3455 77888889999999999999999999997 9999999999999987642 2399999999853   3444444

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.13  E-value=5.6e-11  Score=97.80  Aligned_cols=62  Identities=23%  Similarity=0.126  Sum_probs=55.1

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| +.+.+|+ +++++++||+++|.|| +.||++|+..+|.|.++++++  .+  ++++.|+.|..
T Consensus        22 ~~P~f~l~~~~G~~v~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~--v~vv~Is~d~~   86 (165)
T 1q98_A           22 IVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKL--SN--TIVLCISADLP   86 (165)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHS--TT--EEEEEEESSCH
T ss_pred             CCCCeEEECCCCCEEehHHhCCCeEEEEEECCCCCCccHHHHHHHHHHHHHc--CC--CEEEEEeCCCH
Confidence            34556 8899999 9999999999999999 899999999999999999998  34  99999999853

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=99.13  E-value=4.1e-11  Score=90.90  Aligned_cols=60  Identities=15%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++.    ++.++.+++|.+.                    +++++|++.+
T Consensus        19 ~~~~~v~v~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~vd~~~~~--------------------~~~~~~~v~~   74 (107)
T 1gh2_A           19 AGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP----QAVFLEVDVHQCQ--------------------GTAATNNISA   74 (107)
T ss_dssp             TTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH--------------------HHHHHTTCCS
T ss_pred             CCCCEEEEEEECCCChhhHHHHHHHHHHHHHCC----CcEEEEEECccCH--------------------HHHHhcCCCc
Confidence            358999999999999999999999999999872    2778888887655                    4577788888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        75 ~Pt~   78 (107)
T 1gh2_A           75 TPTF   78 (107)
T ss_dssp             SSEE
T ss_pred             ccEE
Confidence            8853

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.13  E-value=3.9e-11  Score=94.40  Aligned_cols=59  Identities=24%  Similarity=0.487  Sum_probs=49.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++.+.   +.++.|++|.+..                    ++++|+|.++
T Consensus        34 ~~~~~lv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~--------------------l~~~~~v~~~   90 (130)
T 2dml_A           34 SDGLWLVEFYAPWCGHCQRLTPEWKKAATALKDV---VKVGAVNADKHQS--------------------LGGQYGVQGF   90 (130)
T ss_dssp             CSSCEEEEEECTTCSTTGGGHHHHHHHHHHTTTT---SEEEEEETTTCHH--------------------HHHHHTCCSS
T ss_pred             CCCeEEEEEECCCCHHHHhhCHHHHHHHHHhcCc---eEEEEEeCCCCHH--------------------HHHHcCCCcc
Confidence            5899999999999999999999999999988754   7788888887654                    5666667667


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        91 Pt   92 (130)
T 2dml_A           91 PT   92 (130)
T ss_dssp             SE
T ss_pred             CE
Confidence            65

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=99.13  E-value=5.5e-11  Score=92.41  Aligned_cols=60  Identities=23%  Similarity=0.493  Sum_probs=51.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|+||++||++|+.+.|.|.++++.+.+.   +.++.|+++.+.                    +++++|++.++
T Consensus        20 ~~~~~lv~f~a~~C~~C~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~   76 (122)
T 3aps_A           20 GKTHWVVDFYAPWCGPCQNFAPEFELLARMIKGK---VRAGKVDCQAYP--------------------QTCQKAGIKAY   76 (122)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCcCCH--------------------HHHHHcCCCcc
Confidence            5799999999999999999999999999998763   788888887655                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        77 Pt~   79 (122)
T 3aps_A           77 PSV   79 (122)
T ss_dssp             SEE
T ss_pred             ceE
Confidence            863

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=99.13  E-value=4e-11  Score=91.63  Aligned_cols=62  Identities=19%  Similarity=0.462  Sum_probs=49.2

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+.+||+++|+||++||++|+.+.|.|.++++++.+    +.++.|+++...                   ..++++|++
T Consensus        20 ~~~~~~~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~----v~~~~vd~~~~~-------------------~~~~~~~~v   76 (111)
T 2pu9_C           20 KAAGDKPVVLDMFTQWCGPSKAMAPKYEKLAEEYLD----VIFLKLDCNQEN-------------------KTLAKELGI   76 (111)
T ss_dssp             TTCTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT-------------------HHHHHHHCC
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHCHHHHHHHHHCCC----eEEEEEecCcch-------------------HHHHHHcCC
Confidence            334689999999999999999999999999998752    778888877322                   246777788


Q ss_pred             CCCCc
Q 018266          118 DAYPF  122 (358)
Q Consensus       118 ~~~P~  122 (358)
                      .++|+
T Consensus        77 ~~~Pt   81 (111)
T 2pu9_C           77 RVVPT   81 (111)
T ss_dssp             SBSSE
T ss_pred             CeeeE
Confidence            88875

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=99.13  E-value=5e-11  Score=91.11  Aligned_cols=59  Identities=25%  Similarity=0.629  Sum_probs=50.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +||+++|+||++||++|+.+.|.|.++++++...   +.++.+++|.+.                    +++++|++.++
T Consensus        22 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~~   78 (112)
T 1t00_A           22 NDKPVLVDFWAAWCGPCRQIAPSLEAIAAEYGDK---IEIVKLNIDENP--------------------GTAAKYGVMSI   78 (112)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCHhHHhcCHHHHHHHHHhcCC---eEEEEEEcCCCH--------------------HHHHhCCCCcc
Confidence            4899999999999999999999999999988653   788888888765                    35677788888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        79 Pt   80 (112)
T 1t00_A           79 PT   80 (112)
T ss_dssp             SE
T ss_pred             cE
Confidence            85

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5.1e-11  Score=93.28  Aligned_cols=58  Identities=16%  Similarity=0.342  Sum_probs=47.6

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      .++|+||++||++|+.+.|.|.++++++...+  +.++.|+++.+..                    ++++|+|.++|+.
T Consensus        24 ~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~--v~~~~vd~~~~~~--------------------~~~~~~v~~~Pt~   81 (126)
T 1x5e_A           24 DWMIEFYAPWCPACQNLQPEWESFAEWGEDLE--VNIAKVDVTEQPG--------------------LSGRFIINALPTI   81 (126)
T ss_dssp             EEEEEEECSSCHHHHHHHHHHHHHHHHHGGGT--CEEEEEETTTCHH--------------------HHHHTTCCSSSEE
T ss_pred             CEEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECcCCHH--------------------HHHHcCCcccCEE
Confidence            49999999999999999999999999987633  7888888876653                    5667777777753

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=99.12  E-value=2.3e-11  Score=92.75  Aligned_cols=61  Identities=20%  Similarity=0.408  Sum_probs=49.9

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +++++|+||++||++|+.+.|.|.++++.+......+.++.++++.+.                    .++++|++.++|
T Consensus        21 ~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--------------------~l~~~~~v~~~P   80 (111)
T 3uvt_A           21 EGITFIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAER--------------------NICSKYSVRGYP   80 (111)
T ss_dssp             SSEEEEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCH--------------------HHHHHTTCCSSS
T ss_pred             CCcEEEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccH--------------------hHHHhcCCCccc
Confidence            789999999999999999999999999887654334778788777655                    467778888888


Q ss_pred             c
Q 018266          122 F  122 (358)
Q Consensus       122 ~  122 (358)
                      +
T Consensus        81 t   81 (111)
T 3uvt_A           81 T   81 (111)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.8e-11  Score=96.36  Aligned_cols=52  Identities=23%  Similarity=0.340  Sum_probs=42.3

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      +...++++|+|+|||+||++|+.+.|.|++++++++..+  +.++.|+++.+.+
T Consensus        21 ~~~~~~~~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~~~~~~   72 (137)
T 2dj0_A           21 LERDKRVTWIVEFFANWSNDCQSFAPIYADLSLKYNCTG--LNFGKVDVGRYTD   72 (137)
T ss_dssp             HHHSTTSCEEEEECCTTCSTTTTTHHHHHHHHHHHCSSS--CEEEECCTTTCHH
T ss_pred             HhcCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCC--eEEEEEeCccCHH
Confidence            444567799999999999999999999999999997533  7777777766553

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=99.12  E-value=1.7e-11  Score=97.27  Aligned_cols=64  Identities=22%  Similarity=0.393  Sum_probs=49.1

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      ..+++.+||+++|+|||+||++|+.+.|.|+++++++     ++.++.|+++...                    +++++
T Consensus        33 ~~l~~~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~-----~v~~~~vd~~~~~--------------------~l~~~   87 (133)
T 3cxg_A           33 QVFSSTQNSSIVIKFGAVWCKPCNKIKEYFKNQLNYY-----YVTLVDIDVDIHP--------------------KLNDQ   87 (133)
T ss_dssp             HHHTC-CCSEEEEEEECTTCHHHHHTHHHHHGGGGTE-----ECEEEEEETTTCH--------------------HHHHH
T ss_pred             HHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHhc-----CEEEEEEeccchH--------------------HHHHh
Confidence            5566778999999999999999999999998877654     2566666666544                    46777


Q ss_pred             cccCCCCcc
Q 018266          115 YGADAYPFT  123 (358)
Q Consensus       115 ~gi~~~P~~  123 (358)
                      |+|.++|+.
T Consensus        88 ~~v~~~Pt~   96 (133)
T 3cxg_A           88 HNIKALPTF   96 (133)
T ss_dssp             TTCCSSSEE
T ss_pred             cCCCCCCEE
Confidence            888888854

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.12  E-value=4.8e-11  Score=107.24  Aligned_cols=60  Identities=17%  Similarity=0.329  Sum_probs=50.2

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .+||+|+|+||++||+||+.+.|.|+++++++.+.   +.++.|++|.+..                    ++.+|+|.+
T Consensus        24 ~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~~~~~~--------------------~~~~~~v~~   80 (287)
T 3qou_A           24 SMTTPVLFYFWSERSQHCLQLTPILESLAAQYNGQ---FILAKLDCDAEQM--------------------IAAQFGLRA   80 (287)
T ss_dssp             TTTSCEEEEEECTTCTTTTTTHHHHHHHHHHHTSS---SEEEEEETTTCHH--------------------HHHTTTCCS
T ss_pred             cCCCeEEEEEECCCChHHHHHHHHHHHHHHHcCCC---eEEEEEeCccCHH--------------------HHHHcCCCC
Confidence            45899999999999999999999999999999764   7888888887654                    566667777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        81 ~Pt   83 (287)
T 3qou_A           81 IPT   83 (287)
T ss_dssp             SSE
T ss_pred             CCe
Confidence            775

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.12  E-value=4.2e-11  Score=101.86  Aligned_cols=62  Identities=27%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ..++| |.+.+|+ ++|++++||+|+|.|| +.||++|+..+|.|.++++++  .+  ++|+.|+.|..
T Consensus        57 ~aPdf~l~d~~G~~v~L~d~~Gk~vvl~F~~~~~c~~C~~e~~~l~~l~~~~--~~--v~vv~Is~D~~  121 (200)
T 3zrd_A           57 KAKDFTLVAKDLSDVALSSFAGKRKVLNIFPSIDTGVCAASVRKFNQLAGEL--EN--TVVLCISSDLP  121 (200)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTSEEEEEECSCCCCSCCCHHHHHHHHHHHTS--TT--EEEEEEESSCH
T ss_pred             CCCCeEEECCCCCEEcHHHhCCCcEEEEEECCCCCchhHHHHHHHHHHHHHh--CC--CEEEEEECCCH
Confidence            33466 9999999 9999999999999999 789999999999999999998  34  99999999853

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=99.11  E-value=1.3e-11  Score=98.02  Aligned_cols=76  Identities=18%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTL  103 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~  103 (358)
                      +.+.++. ..+++.+||+++|+||++||++|+.+.|.+   .++++.++  +  +.++.|+++.+.+.            
T Consensus        16 ~~~~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~--~--~~~~~vd~~~~~~~------------   79 (134)
T 2fwh_A           16 IKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA--D--TVLLQANVTANDAQ------------   79 (134)
T ss_dssp             CCSHHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT--T--SEEEEEECTTCCHH------------
T ss_pred             ecCHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc--C--cEEEEEeCCCCcch------------
Confidence            3344444 777878899999999999999999999999   88888775  2  78888888653111            


Q ss_pred             cccccceeeeccccCCCCcc
Q 018266          104 IEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       104 ~~~~~~~l~~~~gi~~~P~~  123 (358)
                          ...++++|++.++|+.
T Consensus        80 ----~~~l~~~~~v~~~Pt~   95 (134)
T 2fwh_A           80 ----DVALLKHLNVLGLPTI   95 (134)
T ss_dssp             ----HHHHHHHTTCCSSSEE
T ss_pred             ----HHHHHHHcCCCCCCEE
Confidence                1357788888888864

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=98.70  E-value=7.6e-12  Score=98.57  Aligned_cols=72  Identities=19%  Similarity=0.350  Sum_probs=58.4

Q ss_pred             Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccc
Q 018266           33 GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDL  108 (358)
Q Consensus        33 g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (358)
                      .+ ++++..+||+++|+||++||++|+.+.|.+   .++++.+...   +.++.|+++.++.                  
T Consensus         9 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~---~~~~~vd~~~~~~------------------   67 (130)
T 2lst_A            9 PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEAR---FVVASVSVDTPEG------------------   67 (130)
Confidence            55 888888999999999999999999999999   8888876553   6677777754332                  


Q ss_pred             ceeeeccccCCCCcchH
Q 018266          109 IGLIEDYGADAYPFTRK  125 (358)
Q Consensus       109 ~~l~~~~gi~~~P~~~~  125 (358)
                      ..++++|++.++|+...
T Consensus        68 ~~~~~~~~v~~~Pt~~~   84 (130)
T 2lst_A           68 QELARRYRVPGTPTFVF   84 (130)
Confidence            46889999999997543

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=99.10  E-value=5.1e-11  Score=89.83  Aligned_cols=63  Identities=24%  Similarity=0.511  Sum_probs=51.3

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG  116 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  116 (358)
                      +++.++|+++|+||++||++|+.+.|.+.++++++.+    +.++.+++|.+.                    .++++|+
T Consensus        15 l~~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~vd~~~~~--------------------~~~~~~~   70 (105)
T 3m9j_A           15 LDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ--------------------DVASESE   70 (105)
T ss_dssp             HHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHSTT----SEEEEEETTTCH--------------------HHHHHTT
T ss_pred             HHhcCCCeEEEEEECCCChhhHHHHHHHHHHHHHccC----eEEEEEEhhhhH--------------------HHHHHcC
Confidence            3344689999999999999999999999999998743    778888887665                    4677788


Q ss_pred             cCCCCcc
Q 018266          117 ADAYPFT  123 (358)
Q Consensus       117 i~~~P~~  123 (358)
                      +.++|+.
T Consensus        71 v~~~Pt~   77 (105)
T 3m9j_A           71 VKSMPTF   77 (105)
T ss_dssp             CCBSSEE
T ss_pred             CCcCcEE
Confidence            8888853

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=99.10  E-value=3.1e-11  Score=95.03  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=40.5

Q ss_pred             CCEEEEEEeCCCC--hhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           42 GKTICLFFSANWC--RPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        42 gk~vlv~F~a~wC--~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      +++|+|+|||+||  ++|+++.|.++++++++.++   +.++.|++|.+.+.
T Consensus        33 ~~~vlVdF~A~wCr~gpCk~iaPvleela~e~~~~---v~~~KVdvDe~~~l   81 (137)
T 2qsi_A           33 GKIVVLFFRGDAVRFPEAADLAVVLPELINAFPGR---LVAAEVAAEAERGL   81 (137)
T ss_dssp             SSEEEEEECCCTTTCTTHHHHHHHHHHHHHTSTTT---EEEEEECGGGHHHH
T ss_pred             CCcEEEEEeCCccCCCchhhHHhHHHHHHHHccCC---cEEEEEECCCCHHH
Confidence            3599999999999  99999999999999998765   78888888766543

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=99.10  E-value=6.8e-11  Score=89.53  Aligned_cols=59  Identities=22%  Similarity=0.576  Sum_probs=49.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++++...   +.++.+++|.+.+                    ++++|++.++
T Consensus        18 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~~--------------------~~~~~~v~~~   74 (107)
T 1dby_A           18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESPN--------------------VASEYGIRSI   74 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCHH--------------------HHHHHTCCSS
T ss_pred             CCCcEEEEEECCCCHhHHHHHHHHHHHHHHhCCc---eEEEEEECCCCHH--------------------HHHHCCCCcC
Confidence            5899999999999999999999999999988654   7888888886653                    5666777777


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        75 Pt   76 (107)
T 1dby_A           75 PT   76 (107)
T ss_dssp             CE
T ss_pred             CE
Confidence            75

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=99.10  E-value=3e-11  Score=99.46  Aligned_cols=53  Identities=19%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ..+++++||+++|.|||+|||||+.++|.|.++++.+.    ++.++.|+.|.+.+.
T Consensus        47 ~~l~~~~~k~vvv~F~A~WC~pC~~~~P~l~~l~~~~~----~v~~~~v~~d~~~~~   99 (167)
T 1z6n_A           47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP----NIELAIISKGRAEDD   99 (167)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT----TEEEEEECHHHHHHH
T ss_pred             HHHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHCC----CcEEEEEECCCCHHH
Confidence            55777889999999999999999999999999998753    378888888755443

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=99.10  E-value=7.5e-11  Score=96.05  Aligned_cols=60  Identities=20%  Similarity=0.370  Sum_probs=50.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|+||++||++|+.+.|.|+++++++...   +.++.|++|.+.                    .++++|+|.++
T Consensus        63 ~~~~vlv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~i~~~  119 (155)
T 2ppt_A           63 DDLPLLVDFWAPWCGPCRQMAPQFQAAAATLAGQ---VRLAKIDTQAHP--------------------AVAGRHRIQGI  119 (155)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTST--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHccCC---EEEEEEeCCccH--------------------HHHHHcCCCcC
Confidence            5899999999999999999999999999998754   788888887654                    46777888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       120 Pt~  122 (155)
T 2ppt_A          120 PAF  122 (155)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            853

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=99.10  E-value=7.3e-11  Score=89.05  Aligned_cols=62  Identities=31%  Similarity=0.649  Sum_probs=50.9

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++.++|+++|+||++||++|+.+.|.|.++++.++..   +.++.++++.+.                    .++++|++
T Consensus        16 ~~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v   72 (106)
T 1xwb_A           16 TKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE--------------------DIAMEYNI   72 (106)
T ss_dssp             HHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH--------------------HHHHHTTC
T ss_pred             HhcCCCEEEEEEECCcCHHHHHhhHHHHHHHHHhCCC---eEEEEEeccchH--------------------HHHHHcCC
Confidence            3346899999999999999999999999999988632   788888887655                    45777788


Q ss_pred             CCCCc
Q 018266          118 DAYPF  122 (358)
Q Consensus       118 ~~~P~  122 (358)
                      .++|+
T Consensus        73 ~~~Pt   77 (106)
T 1xwb_A           73 SSMPT   77 (106)
T ss_dssp             CSSSE
T ss_pred             CcccE
Confidence            88885

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=99.09  E-value=1.1e-10  Score=88.15  Aligned_cols=61  Identities=21%  Similarity=0.437  Sum_probs=50.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++++++|+||++||++|+.+.|.|.++++.+...   +.++.++++.+.                    .++++|++.+
T Consensus        18 ~~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~   74 (107)
T 2i4a_A           18 KASGLVLVDFWAEWCGPCKMIGPALGEIGKEFAGK---VTVAKVNIDDNP--------------------ETPNAYQVRS   74 (107)
T ss_dssp             TCSSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTS---EEEEEEETTTCC--------------------HHHHHTTCCS
T ss_pred             hCCCEEEEEEECCCChhHHHHhHHHHHHHHHhCCc---EEEEEEECCCCH--------------------HHHHhcCCCc
Confidence            35899999999999999999999999999998753   888888887654                    4567778888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        75 ~Pt~   78 (107)
T 2i4a_A           75 IPTL   78 (107)
T ss_dssp             SSEE
T ss_pred             cCEE
Confidence            8853

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=99.09  E-value=1.4e-10  Score=89.87  Aligned_cols=60  Identities=17%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             ccCCCCc-eecc-cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCC--CceEEEEEEecC
Q 018266           28 LLSRQGK-VPLS-SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG--TELEVIFISFDH   87 (358)
Q Consensus        28 l~~~~g~-v~l~-~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~--~~~~iv~i~~d~   87 (358)
                      +...+++ +... ..++|+++|+||++||++|+.+.|.|.++++++...+  ..+.++.++++.
T Consensus         9 v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~   72 (121)
T 2djj_A            9 VTVVVAKNYNEIVLDDTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATA   72 (121)
T ss_dssp             SEECCTTTTTTSSSCTTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTT
T ss_pred             eEEecccCHHHHhhcCCCCEEEEEECCCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcc
Confidence            3344444 4333 2468999999999999999999999999999997621  126676666654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=99.09  E-value=3.5e-11  Score=96.18  Aligned_cols=58  Identities=14%  Similarity=0.147  Sum_probs=47.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .+|+++|+||++||++|+.+.|.|.++++.+.+.   +.++.|+++.+...+.++.....+
T Consensus        23 ~~~~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~~l~~~~~v~~~P   80 (140)
T 3hz4_A           23 SKKPVVVMFYSPACPYCKAMEPYFEEYAKEYGSS---AVFGRINIATNPWTAEKYGVQGTP   80 (140)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEETTTCHHHHHHHTCCEES
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHhCCc---eEEEEEECCcCHhHHHHCCCCcCC
Confidence            4899999999999999999999999999999764   788899888776544444333333

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=99.09  E-value=2.8e-11  Score=98.53  Aligned_cols=91  Identities=18%  Similarity=0.365  Sum_probs=60.8

Q ss_pred             ecccccCcccccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHH
Q 018266           18 TVLASEGVEFLLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGF   92 (358)
Q Consensus        18 ~~l~~~~~~~l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~   92 (358)
                      ..+....+++  ...|+ ++++..+||+|+|+|| |+||++|+.++|.+   .++.+.+...   +.++.|+++.+..  
T Consensus        24 ~~~~~~~~~~--~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~---~~~v~vd~~~~~~--   96 (154)
T 2ju5_A           24 RPIAAANLQW--ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVH---LHMVEVDFPQKNH--   96 (154)
T ss_dssp             CSSCCCCCCE--ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEECCSSCC--
T ss_pred             hhcccCCCCC--CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCc---EEEEEecCccccC--
Confidence            3344555565  44567 8999899999999999 99999999999999   6776655332   6777777664320  


Q ss_pred             HHHHhhCCCcccccccceeeeccccCCCCc
Q 018266           93 EEHFKSSDGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                             ....+.+....++++|+|.++|+
T Consensus        97 -------~~~~~~~~~~~l~~~~~v~~~Pt  119 (154)
T 2ju5_A           97 -------QPEEQRQKNQELKAQYKVTGFPE  119 (154)
T ss_dssp             -------CCHHHHHHHHHHHHHTTCCSSSE
T ss_pred             -------CChhhHhhHHHHHHHcCCCCCCE
Confidence                   00000111235667777777775

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=99.09  E-value=9.3e-11  Score=93.18  Aligned_cols=60  Identities=25%  Similarity=0.535  Sum_probs=49.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ..+|+++|+||++||++|+.+.|.|.++++++.+.   +.++.|++|.+.                    +++++|++.+
T Consensus        36 ~~~k~~lv~f~a~wC~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~--------------------~l~~~~~v~~   92 (136)
T 2l5l_A           36 EGDKPAIVDFYADWCGPCKMVAPILDELAKEYDGQ---IVIYKVDTEKEQ--------------------ELAGAFGIRS   92 (136)
T ss_dssp             CCSSCEEEEEECTTSHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCS
T ss_pred             cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---EEEEEEeCCCCH--------------------HHHHHcCCCC
Confidence            35799999999999999999999999999988654   788888888665                    3566777777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        93 ~Pt   95 (136)
T 2l5l_A           93 IPS   95 (136)
T ss_dssp             SCE
T ss_pred             CCE
Confidence            775

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=99.09  E-value=2.1e-11  Score=94.15  Aligned_cols=63  Identities=25%  Similarity=0.601  Sum_probs=50.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++.++..+.++.++.++++.+.                    .++++|++.++
T Consensus        23 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------~~~~~~~v~~~   82 (120)
T 1mek_A           23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES--------------------DLAQQYGVRGY   82 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC--------------------SSHHHHTCCSS
T ss_pred             cCCeEEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCH--------------------HHHHHCCCCcc
Confidence            5899999999999999999999999999998776544666666665433                    56788888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        83 Pt~   85 (120)
T 1mek_A           83 PTI   85 (120)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            864

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=99.08  E-value=1.8e-12  Score=98.63  Aligned_cols=67  Identities=15%  Similarity=0.279  Sum_probs=49.9

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      +++++..||+++|+|||+||++|++++|.|++++++++         .|+++.+..              .+...+++++
T Consensus         5 ~~la~~~~k~~vV~F~A~WC~~C~~~~p~~~~~a~~~~---------~v~~~~~~~--------------~~~~~~l~~~   61 (106)
T 3kp8_A            5 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP---------YVECSPNGP--------------GTPQAQECTE   61 (106)
T ss_dssp             HHHHHHHHHHTCEEEECTTCHHHHHHHHHHGGGGGGSC---------EEESCTTCT--------------TSCCCHHHHH
T ss_pred             hHHHHhcCCCEEEEEECCCCHHHHHHHHHHHHHHHhCC---------EEEEecccc--------------cchhHHHHHH
Confidence            67777788999999999999999999999998875542         455552210              0011468899


Q ss_pred             cccCCCCcch
Q 018266          115 YGADAYPFTR  124 (358)
Q Consensus       115 ~gi~~~P~~~  124 (358)
                      |+|.++|+..
T Consensus        62 ~~V~~~PT~~   71 (106)
T 3kp8_A           62 AGITSYPTWI   71 (106)
T ss_dssp             TTCCSSSEEE
T ss_pred             cCCeEeCEEE
Confidence            9999999743

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=99.08  E-value=9.7e-11  Score=88.21  Aligned_cols=59  Identities=24%  Similarity=0.518  Sum_probs=49.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|+||++||++|+.+.|.+.++++++...   +.++.++++.+.                    .++++|++.++
T Consensus        17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~~   73 (105)
T 1fb6_A           17 SEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP--------------------GIATQYNIRSI   73 (105)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEECCCChHHHHHHHHHHHHHHHhcCc---eEEEEEcCcchH--------------------HHHHhCCCCcc
Confidence            4799999999999999999999999999988654   778888887655                    35777788888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        74 Pt   75 (105)
T 1fb6_A           74 PT   75 (105)
T ss_dssp             SE
T ss_pred             cE
Confidence            85

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=99.08  E-value=9.7e-11  Score=90.77  Aligned_cols=60  Identities=23%  Similarity=0.541  Sum_probs=50.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++...   +.++.|++|.+.                    +++++|++.++
T Consensus        30 ~~k~vlv~f~a~~C~~C~~~~~~l~~~~~~~~~~---v~~~~vd~d~~~--------------------~l~~~~~v~~~   86 (119)
T 1w4v_A           30 SETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGK---VVMAKVDIDDHT--------------------DLAIEYEVSAV   86 (119)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTS---SEEEEEETTTTH--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEeCCCCH--------------------HHHHHcCCCcc
Confidence            5899999999999999999999999999988653   788888887655                    45677788888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        87 Pt~   89 (119)
T 1w4v_A           87 PTV   89 (119)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            853

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=99.08  E-value=9.6e-11  Score=90.74  Aligned_cols=59  Identities=20%  Similarity=0.484  Sum_probs=49.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .||+++|+||++||++|+.+.|.|.++++++ .   ++.++.|+++.+.                    .++++|++.++
T Consensus        22 ~~~~vlv~f~a~wC~~C~~~~~~l~~l~~~~-~---~v~~~~vd~~~~~--------------------~~~~~~~i~~~   77 (118)
T 2f51_A           22 APGLVLVDFFATWCGPCQRLGQILPSIAEAN-K---DVTFIKVDVDKNG--------------------NAADAYGVSSI   77 (118)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHC-T---TSEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHC-C---CeEEEEEECCCCH--------------------HHHHhcCCCCC
Confidence            5899999999999999999999999999987 2   2788888888665                    35777888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        78 Pt~   80 (118)
T 2f51_A           78 PAL   80 (118)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            853

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=99.08  E-value=1.2e-10  Score=91.09  Aligned_cols=59  Identities=22%  Similarity=0.501  Sum_probs=49.2

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .+||+++|+||++||++|+.+.|.|.++++++.    ++.++.|++|.+.                    +++++|+|.+
T Consensus        36 ~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~vd~d~~~--------------------~l~~~~~v~~   91 (124)
T 1xfl_A           36 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLP----NVLFLKVDTDELK--------------------SVASDWAIQA   91 (124)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTSH--------------------HHHHHTTCCS
T ss_pred             hcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CcEEEEEECccCH--------------------HHHHHcCCCc
Confidence            468999999999999999999999999999875    2778888777654                    4677788888


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        92 ~Pt   94 (124)
T 1xfl_A           92 MPT   94 (124)
T ss_dssp             SSE
T ss_pred             cCE
Confidence            885

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=99.07  E-value=9.5e-11  Score=89.48  Aligned_cols=58  Identities=28%  Similarity=0.537  Sum_probs=48.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +|+++|+||++||++|+.+.|.|.++++++.+.   +.++.+++|.+.                    .++++|++.++|
T Consensus        24 ~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~P   80 (112)
T 1ep7_A           24 HKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA--------------------AVAEAAGITAMP   80 (112)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH--------------------HHHHHHTCCBSS
T ss_pred             CCeEEEEEECCCCHHHHHHHHHHHHHHHHcCCC---eEEEEEECCchH--------------------HHHHHcCCCccc
Confidence            899999999999999999999999999988652   788888887655                    356667777777


Q ss_pred             c
Q 018266          122 F  122 (358)
Q Consensus       122 ~  122 (358)
                      +
T Consensus        81 t   81 (112)
T 1ep7_A           81 T   81 (112)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.07  E-value=2.1e-10  Score=97.70  Aligned_cols=105  Identities=18%  Similarity=0.217  Sum_probs=72.8

Q ss_pred             ccCCCCceecccccCccc-c---cCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEE
Q 018266           10 FIDSSDFLTVLASEGVEF-L---LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI   83 (358)
Q Consensus        10 ~~~~~~~~~~l~~~~~~~-l---~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i   83 (358)
                      .+.+..+...+..+.++| +   .+.+|+ |+|++++||+|+|+|| +.||+.|...++.|.+.++++++.|  ++++.|
T Consensus        15 ~p~~~~M~~~VG~~APdF~l~a~~d~~~~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~~f~~~g--~~vigi   92 (216)
T 3sbc_A           15 VPRGSHMVAQVQKQAPTFKKTAVVDGVFDEVSLDKYKGKYVVLAFIPLAFTFVSPTEIIAFSEAAKKFEEQG--AQVLFA   92 (216)
T ss_dssp             -------CCCTTSBCCCCCEEEEETTEEEEECGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred             ccCCCcchhhcCCcCCCCCCcceECCCCcEEehHHhCCCeEEEEEEcCCCCCcCchhhhHHHHhHHhhccCC--ceEEEe
Confidence            334444555555677788 3   366777 9999999999999999 9999999999999999999999988  999999


Q ss_pred             EecCChhHHHHHHhh---------CCCcccccccceeeecccc
Q 018266           84 SFDHDENGFEEHFKS---------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        84 ~~d~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~gi  117 (358)
                      |+|.. .+..++...         ....++.+...++++.||+
T Consensus        93 S~Ds~-~sh~aw~~~~~~~~~~~~l~fpllsD~~~~vak~YGv  134 (216)
T 3sbc_A           93 STDSE-YSLLAWTNIPRKEGGLGPINIPLLADTNHSLSRDYGV  134 (216)
T ss_dssp             ESSCH-HHHHHHHTSCGGGTCCCSCSSCEEECTTSHHHHHHTC
T ss_pred             ecCch-hhHHHHHHHHHHhCCccCcccceEeCCCCHHHHHcCC
Confidence            99953 333333221         1123444445555666654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=99.07  E-value=1.2e-10  Score=89.18  Aligned_cols=61  Identities=23%  Similarity=0.574  Sum_probs=50.9

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++++++|+||++||++|+.+.|.|.++++.+.+.   +.++.++++.+.                    .++++|++.+
T Consensus        23 ~~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---v~~~~v~~~~~~--------------------~~~~~~~v~~   79 (115)
T 1thx_A           23 KAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP--------------------TTVKKYKVEG   79 (115)
T ss_dssp             TCSSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH--------------------HHHHHTTCCS
T ss_pred             cCCceEEEEEECCCCHHHHHhHHHHHHHHHHhCCc---EEEEEEEcCCCH--------------------HHHHHcCCCc
Confidence            35899999999999999999999999999988754   788888888765                    3567777777


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        80 ~Pt~   83 (115)
T 1thx_A           80 VPAL   83 (115)
T ss_dssp             SSEE
T ss_pred             eeEE
Confidence            7753

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=99.06  E-value=1.2e-10  Score=89.67  Aligned_cols=59  Identities=22%  Similarity=0.522  Sum_probs=49.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +||+++|+||++||++|+.+.|.|.++++++.+    +.++.|++|.+.                    +++++|++.++
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~~~~~~~~----v~~~~vd~~~~~--------------------~l~~~~~v~~~   84 (114)
T 2oe3_A           29 QNDKLVIDFYATWCGPCKMMQPHLTKLIQAYPD----VRFVKCDVDESP--------------------DIAKECEVTAM   84 (114)
T ss_dssp             HCSEEEEEEECTTCHHHHHTHHHHHHHHHHCTT----SEEEEEETTTCH--------------------HHHHHTTCCSB
T ss_pred             CCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----CEEEEEECCCCH--------------------HHHHHCCCCcc
Confidence            589999999999999999999999999988753    778888887665                    35777788888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        85 Pt~   87 (114)
T 2oe3_A           85 PTF   87 (114)
T ss_dssp             SEE
T ss_pred             cEE
Confidence            853

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=99.06  E-value=8e-11  Score=91.81  Aligned_cols=62  Identities=21%  Similarity=0.523  Sum_probs=49.3

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+.+||+++|+||++||++|+.+.|.++++++++.+    +.++.++++...                   .+++++|++
T Consensus        33 ~~~~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~-------------------~~~~~~~~v   89 (124)
T 1faa_A           33 KAAGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQEN-------------------KTLAKELGI   89 (124)
T ss_dssp             HHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT-------------------HHHHHHHCC
T ss_pred             HhcCCCEEEEEEECCcCHhHHHHhHHHHHHHHHCCC----CEEEEEecCcch-------------------HHHHHHcCC
Confidence            334789999999999999999999999999988752    678888776322                   246777888


Q ss_pred             CCCCc
Q 018266          118 DAYPF  122 (358)
Q Consensus       118 ~~~P~  122 (358)
                      .++|+
T Consensus        90 ~~~Pt   94 (124)
T 1faa_A           90 RVVPT   94 (124)
T ss_dssp             SSSSE
T ss_pred             CeeeE
Confidence            88885

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.06  E-value=1.6e-10  Score=101.79  Aligned_cols=64  Identities=20%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             cCccc-cc---CCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           23 EGVEF-LL---SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        23 ~~~~~-l~---~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +.++| |.   +.+|+ ++|++++||+++|.|| +.||++|+..+|.|.+++++|++.+  ++|+.|++|..
T Consensus        67 ~aPdF~l~~l~d~~G~~vsLsd~kGK~vvL~F~~a~~cp~C~~el~~l~~l~~~~~~~g--v~vv~IS~D~~  136 (254)
T 3tjj_A           67 PAPYWEGTAVIDGEFKELKLTDYRGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSIN--TEVVACSVDSQ  136 (254)
T ss_dssp             BCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCcEeeeecCCCCcEEeHHHHCCCeEEEEEECCCCCCchHHHHHHHHHHHHHHHHcC--CEEEEEcCCCH
Confidence            44566 33   55678 9999999999999999 9999999999999999999999877  99999999853

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=99.06  E-value=4.1e-10  Score=109.35  Aligned_cols=68  Identities=22%  Similarity=0.494  Sum_probs=60.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|.||++||++|+.+.|.+.+++++++.   .++.++.|+++..                       ..++++|+
T Consensus        30 ~~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~---~~v~~~~vd~~~~-----------------------~~l~~~~~   83 (504)
T 2b5e_A           30 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTEN-----------------------QDLCMEHN   83 (504)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCCCHHHHHhHHHHHHHHHHhcc---CCeEEEEEECCCC-----------------------HHHHHhcC
Confidence            478999999999999999999999999999974   3688888888764                       68999999


Q ss_pred             CCceeeEEEECCCCc
Q 018266          249 IKGIPALVLIGPDGK  263 (358)
Q Consensus       249 v~~~P~~~lid~~G~  263 (358)
                      |+++||++++ ++|+
T Consensus        84 v~~~Pt~~~~-~~g~   97 (504)
T 2b5e_A           84 IPGFPSLKIF-KNSD   97 (504)
T ss_dssp             CCSSSEEEEE-ETTC
T ss_pred             CCcCCEEEEE-eCCc
Confidence            9999999999 5565

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=99.06  E-value=5.3e-10  Score=107.93  Aligned_cols=70  Identities=19%  Similarity=0.410  Sum_probs=60.7

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.|.+.+++++++.    .+.++.|.++..                       ..++++|+|
T Consensus        21 ~~~~lv~F~a~wC~~C~~~~p~~~~~a~~~~~----~v~~~~vd~~~~-----------------------~~l~~~~~v   73 (481)
T 3f8u_A           21 AGLMLVEFFAPWCGHAKRLAPEYEAAATRLKG----IVPLAKVDCTAN-----------------------TNTCNKYGV   73 (481)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT----TCCEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCeEEEEEECCCCHHHHHhHHHHHHHHHHhcC----ceEEEEEECCCC-----------------------HHHHHhcCC
Confidence            48999999999999999999999999999973    377888887764                       689999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      +++||++++ ++|+++.+
T Consensus        74 ~~~Ptl~~~-~~g~~~~~   90 (481)
T 3f8u_A           74 SGYPTLKIF-RDGEEAGA   90 (481)
T ss_dssp             CEESEEEEE-ETTEEEEE
T ss_pred             CCCCEEEEE-eCCceeee
Confidence            999999999 77865544

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=99.06  E-value=6.3e-11  Score=91.46  Aligned_cols=62  Identities=27%  Similarity=0.494  Sum_probs=50.5

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .+++.+||+++|+||++||++|+.+.|.|.++++++   +  +.++.|++|.+.                    +++++|
T Consensus        27 ~l~~~~~~~~vv~f~a~wC~~C~~~~~~~~~~~~~~---~--~~~~~vd~~~~~--------------------~~~~~~   81 (117)
T 2xc2_A           27 LLEQHKNKLVVVDFFATWCGPCKTIAPLFKELSEKY---D--AIFVKVDVDKLE--------------------ETARKY   81 (117)
T ss_dssp             HHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHTTS---S--SEEEEEETTTSH--------------------HHHHHT
T ss_pred             HHHhCCCCEEEEEEECCCCHhHHHHhHHHHHHHHHc---C--cEEEEEECCccH--------------------HHHHHc
Confidence            344457999999999999999999999999988876   2  778888877654                    467778


Q ss_pred             ccCCCCc
Q 018266          116 GADAYPF  122 (358)
Q Consensus       116 gi~~~P~  122 (358)
                      ++.++|+
T Consensus        82 ~v~~~Pt   88 (117)
T 2xc2_A           82 NISAMPT   88 (117)
T ss_dssp             TCCSSSE
T ss_pred             CCCccce
Confidence            8888885

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=99.06  E-value=1.2e-10  Score=91.28  Aligned_cols=59  Identities=17%  Similarity=0.403  Sum_probs=49.5

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++.    ++.++.|++|.+.                    +++++|++.+
T Consensus        35 ~~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~--------------------~l~~~~~v~~   90 (125)
T 1r26_A           35 SEDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS--------------------EIVSKCRVLQ   90 (125)
T ss_dssp             HSSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH--------------------HHHHHTTCCS
T ss_pred             ccCCEEEEEEECCcCHhHHHHHHHHHHHHHHCC----CCEEEEEECCCCH--------------------HHHHHcCCCc
Confidence            368999999999999999999999999999873    2788888888665                    4677788888


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        91 ~Pt   93 (125)
T 1r26_A           91 LPT   93 (125)
T ss_dssp             SSE
T ss_pred             ccE
Confidence            885

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=99.06  E-value=1e-10  Score=92.48  Aligned_cols=66  Identities=27%  Similarity=0.513  Sum_probs=52.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHH--HHHHHHhcCCCceEEEEEEe---cCChhHHHHHHhhCCCcccccccc
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLV--QLYDTLRTRGTELEVIFISF---DHDENGFEEHFKSSDGTLIEEDLI  109 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~--~~~~~l~~~~~~~~iv~i~~---d~~~~~~~~~~~~~~~~~~~~~~~  109 (358)
                      +..+..+||+|+|+||++||++|+.+.|.|.  ++++.++..   +.++.|++   |...                    
T Consensus        22 ~~~~~~~~k~vlv~f~a~wC~~C~~~~~~l~~~~~~~~~~~~---~~~~~vd~~~~~~~~--------------------   78 (133)
T 3fk8_A           22 LAAGKRTHKPTLLVFGANWCTDCRALDKSLRNQKNTALIAKH---FEVVKIDVGNFDRNL--------------------   78 (133)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHTSHHHHHHHHHH---CEEEEEECTTTTSSH--------------------
T ss_pred             HHHHHhcCCcEEEEEcCCCCHHHHHHHHHhCCHHHHHHhcCC---EEEEEEeCCcccchH--------------------
Confidence            4444456999999999999999999999999  999988654   88888888   4443                    


Q ss_pred             eeeecccc---CCCCcc
Q 018266          110 GLIEDYGA---DAYPFT  123 (358)
Q Consensus       110 ~l~~~~gi---~~~P~~  123 (358)
                      .++++|++   .++|+.
T Consensus        79 ~l~~~~~v~~~~~~Pt~   95 (133)
T 3fk8_A           79 ELSQAYGDPIQDGIPAV   95 (133)
T ss_dssp             HHHHHTTCGGGGCSSEE
T ss_pred             HHHHHhCCccCCccceE
Confidence            46677777   777753

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=99.05  E-value=2.3e-10  Score=108.37  Aligned_cols=72  Identities=22%  Similarity=0.367  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccC----CceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTAN----HCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~----~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      .+|+|+|+|||+||++|+.+.|.+.+++++++...+    +.+.++.|++|..                       ..++
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~-----------------------~~la   97 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASE-----------------------VDLC   97 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTC-----------------------HHHH
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCC-----------------------HHHH
Confidence            348999999999999999999999999999874111    1488888888864                       6899


Q ss_pred             HHcCCCceeeEEEECCCCc
Q 018266          245 RIFNIKGIPALVLIGPDGK  263 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~  263 (358)
                      ++|+|.++||+++|+++|.
T Consensus        98 ~~y~V~~~PTlilf~~gg~  116 (470)
T 3qcp_A           98 RKYDINFVPRLFFFYPRDS  116 (470)
T ss_dssp             HHTTCCSSCEEEEEEESSC
T ss_pred             HHcCCCccCeEEEEECCCc
Confidence            9999999999999976553

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.05  E-value=1.6e-10  Score=99.98  Aligned_cols=60  Identities=30%  Similarity=0.605  Sum_probs=52.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+|+|+||++||++|+.+.|.|.++++++++.   +.++.|++|.+.                    .++++|+|.++
T Consensus        29 ~~k~vvv~F~a~wC~~C~~~~p~l~~l~~~~~~~---v~~~~vd~d~~~--------------------~l~~~~~v~~~   85 (222)
T 3dxb_A           29 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRGI   85 (222)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCT--------------------TTGGGGTCCSB
T ss_pred             cCCEEEEEEECCcCHHHHHHHHHHHHHHHHhcCC---cEEEEEECCCCH--------------------HHHHHcCCCcC
Confidence            5899999999999999999999999999998765   778888887654                    47889999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        86 Pt~   88 (222)
T 3dxb_A           86 PTL   88 (222)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            963

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=99.04  E-value=3.6e-11  Score=95.86  Aligned_cols=64  Identities=25%  Similarity=0.478  Sum_probs=51.5

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      +..+..+||+++|+||++||++|+.+.|.|.++++++.    ++.++.|++|.+.                    +++++
T Consensus        39 ~~~~~~~~k~vvv~f~a~wC~~C~~~~~~l~~l~~~~~----~v~~~~v~~~~~~--------------------~~~~~   94 (139)
T 3d22_A           39 LSEASRDGKIVLANFSARWCGPSRQIAPYYIELSENYP----SLMFLVIDVDELS--------------------DFSAS   94 (139)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSH--------------------HHHHH
T ss_pred             HHHHhhcCCEEEEEEECCCCHHHHHHHHHHHHHHHHCC----CCEEEEEeCcccH--------------------HHHHH
Confidence            44444569999999999999999999999999998873    2788888888665                    35667


Q ss_pred             cccCCCCc
Q 018266          115 YGADAYPF  122 (358)
Q Consensus       115 ~gi~~~P~  122 (358)
                      |++.++|+
T Consensus        95 ~~v~~~Pt  102 (139)
T 3d22_A           95 WEIKATPT  102 (139)
T ss_dssp             TTCCEESE
T ss_pred             cCCCcccE
Confidence            77777774

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=99.04  E-value=2.1e-10  Score=82.83  Aligned_cols=59  Identities=19%  Similarity=0.310  Sum_probs=49.9

Q ss_pred             CEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCc
Q 018266           43 KTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        43 k~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      +++++.||++||++|+.+.|.++++++++.+.   +.++.++++.+.                    +++++||+.++|+
T Consensus         3 ~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~Pt   59 (85)
T 1fo5_A            3 KVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMENP--------------------QKAMEYGIMAVPT   59 (85)
T ss_dssp             CEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSSC--------------------CTTTSTTTCCSSE
T ss_pred             ceEEEEEeCCCCCchHHHHHHHHHHHHHcCCc---eEEEEEECCCCH--------------------HHHHHCCCcccCE
Confidence            57899999999999999999999999988643   888888887554                    5788999999997


Q ss_pred             ch
Q 018266          123 TR  124 (358)
Q Consensus       123 ~~  124 (358)
                      ..
T Consensus        60 ~~   61 (85)
T 1fo5_A           60 IV   61 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=99.04  E-value=1.7e-10  Score=89.62  Aligned_cols=58  Identities=22%  Similarity=0.570  Sum_probs=48.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++++.+    +.++.|++|.+.                    +++++|++.++
T Consensus        33 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~----~~~~~vd~~~~~--------------------~~~~~~~v~~~   88 (122)
T 2vlu_A           33 AKKLVVIDFTASWCGPCRIMAPVFADLAKKFPN----AVFLKVDVDELK--------------------PIAEQFSVEAM   88 (122)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             cCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCC----cEEEEEECCCCH--------------------HHHHHcCCCcc
Confidence            689999999999999999999999999988753    778888887655                    45777888888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        89 Pt   90 (122)
T 2vlu_A           89 PT   90 (122)
T ss_dssp             SE
T ss_pred             cE
Confidence            85

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.04  E-value=2.2e-10  Score=99.53  Aligned_cols=64  Identities=23%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             ccCccc-ccCCCCceecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           22 SEGVEF-LLSRQGKVPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        22 ~~~~~~-l~~~~g~v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ...++| +.+.+|.+++++++|| +++|+|| ++||++|...+|.|.++++++++.+  ++++.|++|.
T Consensus         7 ~~aPdF~l~~~~G~v~l~d~~Gk~~vvL~f~pa~~cpvC~~el~~l~~l~~ef~~~~--v~vigIS~D~   73 (233)
T 2v2g_A            7 EVFPNFEADSTIGKLKFHDWLGNSWGVLFSHPRDFTPVSTTELGRVIQLEGDFKKRG--VKLIALSCDN   73 (233)
T ss_dssp             CBCCCCEEEETTCCEEHHHHHCSSEEEEEECSCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSC
T ss_pred             CCCCCcEEecCCCCEEHHHHCCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHcC--CEEEEEcCCC
Confidence            344566 7888889999999998 9999998 9999999999999999999998877  9999999985

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=99.04  E-value=2.4e-10  Score=86.55  Aligned_cols=60  Identities=22%  Similarity=0.428  Sum_probs=50.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++.+.+.   +.++.++++.+.                    .++++|++.++
T Consensus        17 ~~~~~lv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~~   73 (109)
T 2yzu_A           17 QHPLVLVDFWAEWCAPCRMIAPILEEIAKEYEGK---LLVAKLDVDENP--------------------KTAMRYRVMSI   73 (109)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCHHHHHhhHHHHHHHHHhhCc---eEEEEEECCCCH--------------------hHHHhCCCCcC
Confidence            4799999999999999999999999999988653   788888888665                    35677777777


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        74 Pt~   76 (109)
T 2yzu_A           74 PTV   76 (109)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            753

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=99.04  E-value=8e-10  Score=102.25  Aligned_cols=69  Identities=17%  Similarity=0.236  Sum_probs=59.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHH-------HHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQ-------LIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQ  241 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~-------l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      .+++++|+|||+||+ |+.+.|.       +.++++.++.   .++.++.|.++..                       .
T Consensus        27 ~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~~~a~~~~~---~~v~~~~Vd~~~~-----------------------~   79 (350)
T 1sji_A           27 KYDVLCLYYHESVSS-DKVAQKQFQLKEIVLELVAQVLEH---KDIGFVMVDAKKE-----------------------A   79 (350)
T ss_dssp             TCSEEEEEEECCSCS-SSTTSHHHHHHHHHHHHHHHHGGG---SSEEEEEEETTTT-----------------------H
T ss_pred             hCCeEEEEEECCCCc-chhhCchhhhhhHHHHHHHHHHhh---cCcEEEEEeCCCC-----------------------H
Confidence            468999999999999 9999998       8888888874   4688888888764                       6


Q ss_pred             HHHHHcCCCceeeEEEECCCCcEE
Q 018266          242 DLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       242 ~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                      .++++|+|+++||++++ ++|++.
T Consensus        80 ~l~~~~~v~~~Pt~~~~-~~g~~~  102 (350)
T 1sji_A           80 KLAKKLGFDEEGSLYVL-KGDRTI  102 (350)
T ss_dssp             HHHHHHTCCSTTEEEEE-ETTEEE
T ss_pred             HHHHhcCCCccceEEEE-ECCcEE
Confidence            79999999999999999 788754

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=99.04  E-value=1.8e-10  Score=88.97  Aligned_cols=64  Identities=20%  Similarity=0.368  Sum_probs=48.2

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +|++++|+||++||++|+.+.|.|.++++++..     .+++++++...+. .             ....++++|+|.++
T Consensus        28 ~~~~~~v~f~a~wC~~C~~~~p~l~~~~~~~~~-----~v~~~~~~~~~~~-~-------------~~~~~~~~~~i~~~   88 (118)
T 1zma_A           28 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA-----HIYFINSEEPSQL-N-------------DLQAFRSRYGIPTV   88 (118)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC-----CCEEEETTCGGGH-H-------------HHHHHHHHHTCCSS
T ss_pred             CCCeEEEEEECCCCccHHHHHHHHHHHHHhcCC-----eEEEEECCCcCcH-H-------------HHHHHHHHcCCCCC
Confidence            578999999999999999999999999987752     3777777653210 0             01246778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        89 Pt~   91 (118)
T 1zma_A           89 PGF   91 (118)
T ss_dssp             CEE
T ss_pred             CeE
Confidence            864

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=99.04  E-value=2.1e-10  Score=88.87  Aligned_cols=60  Identities=25%  Similarity=0.471  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++++...   +.++.|+++.+.                    .++++|++.++
T Consensus        29 ~~~~~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~i~~~   85 (121)
T 2i1u_A           29 SNKPVLVDFWATWCGPCKMVAPVLEEIATERATD---LTVAKLDVDTNP--------------------ETARNFQVVSI   85 (121)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEECCCCHHHHHHHHHHHHHHHHhcCC---eEEEEEECCCCH--------------------HHHHhcCCCcC
Confidence            5899999999999999999999999999988653   788888888665                    45777888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        86 Pt~   88 (121)
T 2i1u_A           86 PTL   88 (121)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            863

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=99.03  E-value=1.8e-10  Score=93.52  Aligned_cols=59  Identities=15%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++.    ++.++.|+++.+..                    ++++|+|.+
T Consensus        30 ~~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~~~~~~--------------------l~~~~~v~~   85 (153)
T 2wz9_A           30 KAKSLLVVHFWAPWAPQCAQMNEVMAELAKELP----QVSFVKLEAEGVPE--------------------VSEKYEISS   85 (153)
T ss_dssp             TTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTSHH--------------------HHHHTTCCS
T ss_pred             cCCCeEEEEEECCCCHhHHHHHHHHHHHHHHcC----CeEEEEEECCCCHH--------------------HHHHcCCCC
Confidence            358999999999999999999999999999863    37888888876653                    566677777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        86 ~Pt   88 (153)
T 2wz9_A           86 VPT   88 (153)
T ss_dssp             SSE
T ss_pred             CCE
Confidence            775

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=99.03  E-value=2e-10  Score=86.24  Aligned_cols=61  Identities=28%  Similarity=0.603  Sum_probs=49.9

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++.+||+++|+||++||++|+.+.|.|.++++++.    ++.++.++++.+.                    .++++|++
T Consensus        15 ~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~----~~~~~~v~~~~~~--------------------~~~~~~~v   70 (104)
T 2vim_A           15 NENKGRLIVVDFFAQWCGPCRNIAPKVEALAKEIP----EVEFAKVDVDQNE--------------------EAAAKYSV   70 (104)
T ss_dssp             HTTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEETTTCH--------------------HHHHHTTC
T ss_pred             HhcCCCeEEEEEECCCCHHHHHhhHHHHHHHHHCC----CCEEEEEeccCCH--------------------HHHHHcCC
Confidence            33468999999999999999999999999998874    2788888887655                    35667777


Q ss_pred             CCCCc
Q 018266          118 DAYPF  122 (358)
Q Consensus       118 ~~~P~  122 (358)
                      .++|+
T Consensus        71 ~~~Pt   75 (104)
T 2vim_A           71 TAMPT   75 (104)
T ss_dssp             CSSSE
T ss_pred             ccccE
Confidence            77775

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=99.02  E-value=1.7e-10  Score=95.23  Aligned_cols=62  Identities=16%  Similarity=0.301  Sum_probs=48.1

Q ss_pred             CCCEEEEEEeC-------CCChhhhhhhHHHHHHHHHHhcCC--CceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           41 GGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRG--TELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        41 ~gk~vlv~F~a-------~wC~~C~~~~p~~~~~~~~l~~~~--~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      ++.+|+|+|||       +||++|+++.|.|+++++++....  ..+.++.|++|...                    ++
T Consensus        36 ~~~~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~--------------------~l   95 (178)
T 3ga4_A           36 PGYFNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP--------------------QL   95 (178)
T ss_dssp             TTCEEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH--------------------HH
T ss_pred             CCCcEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH--------------------HH
Confidence            46799999999       499999999999999999997221  12666666666555                    56


Q ss_pred             eeccccCCCCc
Q 018266          112 IEDYGADAYPF  122 (358)
Q Consensus       112 ~~~~gi~~~P~  122 (358)
                      +.+|||+++|+
T Consensus        96 a~~~~I~siPt  106 (178)
T 3ga4_A           96 VKDLKLQNVPH  106 (178)
T ss_dssp             HHHTTCCSSCE
T ss_pred             HHHcCCCCCCE
Confidence            77778888875

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=99.02  E-value=2.8e-10  Score=88.04  Aligned_cols=41  Identities=7%  Similarity=0.047  Sum_probs=35.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +++|+|+|||+||++|+.+.|.|+++++++.+    +.++.|++|
T Consensus        23 ~~~vvv~F~a~wc~~C~~~~p~l~~la~~~~~----v~f~kvd~d   63 (118)
T 3evi_A           23 DVWVIIHLYRSSIPMCLLVNQHLSLLARKFPE----TKFVKAIVN   63 (118)
T ss_dssp             TCEEEEEEECTTSHHHHHHHHHHHHHHHHCTT----SEEEEEEGG
T ss_pred             CCeEEEEEeCCCChHHHHHHHHHHHHHHHCCC----CEEEEEEhH
Confidence            46999999999999999999999999998742    667777766

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.02  E-value=7.7e-11  Score=100.98  Aligned_cols=71  Identities=15%  Similarity=0.278  Sum_probs=55.3

Q ss_pred             CCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccc
Q 018266           30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDL  108 (358)
Q Consensus        30 ~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (358)
                      ..+++ +.....+||+++|.||++||++|+.+.|.|.++++++...   +.++.|+++.+.                   
T Consensus       101 ~l~~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~~~~~-------------------  158 (210)
T 3apq_A          101 TLERREFDAAVNSGELWFVNFYSPGCSHCHDLAPTWREFAKEVDGL---LRIGAVNCGDDR-------------------  158 (210)
T ss_dssp             ECCHHHHHHHHHHSCCEEEEEECTTCHHHHHHHHHHHHHHHHTBTT---BEEEEEETTTCH-------------------
T ss_pred             EecHHHHHHHHccCCcEEEEEeCCCChhHHHHHHHHHHHHHHhcCc---eEEEEEECCccH-------------------
Confidence            33444 3333356899999999999999999999999999988654   788888887665                   


Q ss_pred             ceeeeccccCCCCcc
Q 018266          109 IGLIEDYGADAYPFT  123 (358)
Q Consensus       109 ~~l~~~~gi~~~P~~  123 (358)
                       .++++|+|.++|+.
T Consensus       159 -~l~~~~~v~~~Pt~  172 (210)
T 3apq_A          159 -MLCRMKGVNSYPSL  172 (210)
T ss_dssp             -HHHHHTTCCSSSEE
T ss_pred             -HHHHHcCCCcCCeE
Confidence             46777888888863

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=99.01  E-value=2.8e-10  Score=87.04  Aligned_cols=58  Identities=22%  Similarity=0.421  Sum_probs=48.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +||+++|+||++||++|+.+.|.|.++++++.  +  +.++.|+++.+.                    .++++|++.++
T Consensus        25 ~~k~vlv~f~a~~C~~C~~~~~~l~~l~~~~~--~--v~~~~vd~~~~~--------------------~~~~~~~v~~~   80 (112)
T 1syr_A           25 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYT--K--MVFIKVDVDEVS--------------------EVTEKENITSM   80 (112)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTTH--------------------HHHHHTTCCSS
T ss_pred             cCCeEEEEEECCCCHHHHHHHHHHHHHHHHcC--C--CEEEEEECCCCH--------------------HHHHHcCCCcc
Confidence            58999999999999999999999999998874  2  788888887655                    45677788888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        81 Pt   82 (112)
T 1syr_A           81 PT   82 (112)
T ss_dssp             SE
T ss_pred             cE
Confidence            85

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=99.01  E-value=1.2e-10  Score=96.36  Aligned_cols=52  Identities=13%  Similarity=0.275  Sum_probs=39.4

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCCh
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      +.++..+||+|+|+|||+||++|+.+.+.+   .++.+.+++.   +.++.|++|...
T Consensus        40 ~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~---~~~v~v~~d~~~   94 (172)
T 3f9u_A           40 MEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINND---YVLITLYVDNKT   94 (172)
T ss_dssp             HHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHH---CEEEEEETTCCC
T ss_pred             HHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCC---EEEEEEecCccc
Confidence            666667899999999999999999985544   5555555442   788888887543

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=99.01  E-value=1.5e-10  Score=86.84  Aligned_cols=58  Identities=21%  Similarity=0.472  Sum_probs=48.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.+.++++.+.+    +.++.+++|.+.+                    ++++|++.++
T Consensus        15 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~--------------------~~~~~~v~~~   70 (104)
T 2e0q_A           15 SHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQ----VGFGKLNSDENPD--------------------IAARYGVMSL   70 (104)
T ss_dssp             HSSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCHH--------------------HHHHTTCCSS
T ss_pred             cCCcEEEEEECCCChhHHHHhHHHHHHHHHcCC----ceEEEEECCCCHH--------------------HHHhCCcccc
Confidence            589999999999999999999999999888753    7788888886653                    5667777777


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        71 Pt   72 (104)
T 2e0q_A           71 PT   72 (104)
T ss_dssp             CE
T ss_pred             CE
Confidence            75

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=98.99  E-value=1.2e-10  Score=90.59  Aligned_cols=61  Identities=26%  Similarity=0.540  Sum_probs=49.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++...+  +.++.+++|.+.+                    ++++|++.+
T Consensus        31 ~~~k~vvv~f~a~~C~~C~~~~~~l~~l~~~~~~~~--v~~~~vd~d~~~~--------------------~~~~~~v~~   88 (121)
T 2j23_A           31 GGDKVVVIDFWATWCGPCKMIGPVFEKISDTPAGDK--VGFYKVDVDEQSQ--------------------IAQEVGIRA   88 (121)
T ss_dssp             SSSSCEEEEEECTTCSTHHHHHHHHHHHHTSTHHHH--SEEEEEETTTCHH--------------------HHHHHTCCS
T ss_pred             cCCCEEEEEEECCCCHhHHHHHHHHHHHHHHCcCCc--EEEEEEECcCCHH--------------------HHHHcCCCc
Confidence            358999999999999999999999999998876643  7888888886653                    566677777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        89 ~Pt   91 (121)
T 2j23_A           89 MPT   91 (121)
T ss_dssp             SSE
T ss_pred             ccE
Confidence            774

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=98.99  E-value=6.6e-10  Score=94.82  Aligned_cols=95  Identities=21%  Similarity=0.268  Sum_probs=75.2

Q ss_pred             ccccCccc-----ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHH
Q 018266           20 LASEGVEF-----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGF   92 (358)
Q Consensus        20 l~~~~~~~-----l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~   92 (358)
                      +..+.++|     +.+.+|+ |+|++++||.|+|+|| +.||+.|...+..|.+.+++|++.+  ++|+.||+|. ..+.
T Consensus        28 vG~~APdF~~~a~l~d~~g~~vsLsd~~GK~vVL~FyP~d~TpvCt~E~~~f~~~~~eF~~~g--~~vigiS~Ds-~~sh  104 (219)
T 3tue_A           28 INSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSDSVSRFNELN--CEVLACSIDS-EYAH  104 (219)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSSCCHHHHHHHTTHHHHHTTT--EEEEEEESSC-HHHH
T ss_pred             cCCcCCCCcccccccCCCCcEEehHHhCCCEEEEEEecccCCCCCchhHhhHHHHHhhhccCC--cEEEEeeCCc-hhhH
Confidence            44567788     5678888 9999999999999999 8999999999999999999999988  9999999995 3333


Q ss_pred             HHHHhh---------CCCcccccccceeeecccc
Q 018266           93 EEHFKS---------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        93 ~~~~~~---------~~~~~~~~~~~~l~~~~gi  117 (358)
                      .++...         ....++.+...++++.||+
T Consensus       105 ~~w~~~~~~~~~~~~l~fpllsD~~~~va~~yGv  138 (219)
T 3tue_A          105 LQWTLQDRKKGGLGTMAIPILADKTKNIARSYGV  138 (219)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTSHHHHHTTC
T ss_pred             HHHhhhhHHhcCccccccccccCcccHHHHHcCC
Confidence            333322         1235566666677777776

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=98.98  E-value=3.6e-10  Score=98.96  Aligned_cols=67  Identities=19%  Similarity=0.327  Sum_probs=57.0

Q ss_pred             ccccCccc-ccCCCCceec-ccC--CCCE-EEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           20 LASEGVEF-LLSRQGKVPL-SSC--GGKT-ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        20 l~~~~~~~-l~~~~g~v~l-~~~--~gk~-vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +....++| +.+.+|.+++ +++  +||+ ||++||++||++|...+|.|.++++++++.+  ++++.|++|..
T Consensus         7 iG~~aPdF~l~~~~G~v~l~~d~l~~GK~vVL~~fpa~~CpvC~tEl~~l~~l~~ef~~~g--v~VI~VS~Ds~   78 (249)
T 3a2v_A            7 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSV   78 (249)
T ss_dssp             TTSBCCCEEEEETTEEEEETHHHHTTTCEEEEECCSCTTCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCH
T ss_pred             CCCCCCCeEEEcCCCCEecHHHHhhCCCEEEEEEEcCCCCcChHHHHHHHHHHHHHHHhCC--cEEEEEECCCH
Confidence            33455677 7788888999 999  9996 5567889999999999999999999999877  99999999863

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=98.98  E-value=4.1e-10  Score=85.99  Aligned_cols=49  Identities=24%  Similarity=0.533  Sum_probs=41.3

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ..+||+++|+||++||++|+.+.|.|.++++.+.    ++.++.+++|.+...
T Consensus        23 ~~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~----~v~~~~v~~~~~~~~   71 (113)
T 1ti3_A           23 KGSQKLIVVDFTASWCPPCKMIAPIFAELAKKFP----NVTFLKVDVDELKAV   71 (113)
T ss_dssp             TTSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS----SEEEEEEETTTCHHH
T ss_pred             hhcCCeEEEEEECCCCHHHHHHHHHHHHHHHhCC----CcEEEEEEccccHHH
Confidence            3468999999999999999999999999998875    278888888766543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.97  E-value=2.9e-10  Score=82.08  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=48.6

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      .+++.||++||++|+.+.|.+.++++++.+.   +.++.+++|.+.                    +++++||+.++|+.
T Consensus         3 ~~vv~f~~~~C~~C~~~~~~l~~~~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~v~~~Pt~   59 (85)
T 1nho_A            3 VNIEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR--------------------EKAIEYGLMAVPAI   59 (85)
T ss_dssp             CCEEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG--------------------GGGGGTCSSCSSEE
T ss_pred             EEEEEEECCCCcchHHHHHHHHHHHHHhcCC---eEEEEEECCCCH--------------------HHHHhCCceeeCEE
Confidence            4689999999999999999999999988743   778888887654                    46889999999975


Q ss_pred             h
Q 018266          124 R  124 (358)
Q Consensus       124 ~  124 (358)
                      -
T Consensus        60 ~   60 (85)
T 1nho_A           60 A   60 (85)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=98.97  E-value=2.5e-10  Score=87.17  Aligned_cols=59  Identities=19%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++|+++|+||++||++|+.+.|.|.++++.+.    ++.++.++++...                    +++++|++.++
T Consensus        18 ~~~~~vv~f~a~wC~~C~~~~~~l~~~~~~~~----~v~~~~vd~~~~~--------------------~l~~~~~v~~~   73 (110)
T 2l6c_A           18 GLSDAIVFFHKNLCPHCKNMEKVLDKFGARAP----QVAISSVDSEARP--------------------ELMKELGFERV   73 (110)
T ss_dssp             TCSEEEEEEECSSCSTHHHHHHHHHHHHTTCT----TSCEEEEEGGGCH--------------------HHHHHTTCCSS
T ss_pred             cCCCEEEEEECCCCHhHHHHHHHHHHHHHHCC----CcEEEEEcCcCCH--------------------HHHHHcCCccc
Confidence            47999999999999999999999999887764    3678888887655                    45677788778


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        74 Pt~   76 (110)
T 2l6c_A           74 PTL   76 (110)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            753

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=98.97  E-value=7.2e-10  Score=88.40  Aligned_cols=72  Identities=28%  Similarity=0.540  Sum_probs=47.9

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEE  106 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~  106 (358)
                      +...+++ +...-.+++.++|+||++||++|+.+.|.|.++++++...   +.++.|+++.+.                 
T Consensus        35 v~~l~~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~l~~l~~~~~~~---v~~~~vd~~~~~-----------------   94 (140)
T 1v98_A           35 VVEADEKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPILEELARDHAGR---LKVVKVNVDEHP-----------------   94 (140)
T ss_dssp             --------------CCCEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH-----------------
T ss_pred             cccCCHHHHHHHHHcCCCEEEEEECCCCHHHHHHHHHHHHHHHHccCc---eEEEEEECCCCH-----------------
Confidence            3444444 4333223334999999999999999999999999988653   788888887665                 


Q ss_pred             ccceeeeccccCCCCc
Q 018266          107 DLIGLIEDYGADAYPF  122 (358)
Q Consensus       107 ~~~~l~~~~gi~~~P~  122 (358)
                         .++++|++.++|+
T Consensus        95 ---~l~~~~~v~~~Pt  107 (140)
T 1v98_A           95 ---GLAARYGVRSVPT  107 (140)
T ss_dssp             ---HHHHHTTCCSSSE
T ss_pred             ---HHHHHCCCCccCE
Confidence               3567777777775

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=98.96  E-value=2.4e-10  Score=89.16  Aligned_cols=62  Identities=29%  Similarity=0.559  Sum_probs=47.3

Q ss_pred             CCCCEEEEEEeCCCCh--------------hhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccc
Q 018266           40 CGGKTICLFFSANWCR--------------PCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIE  105 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~--------------~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~  105 (358)
                      .+||+++|+||++||+              +|+.+.|.|+++++++.+.   +.++.+++|.+.                
T Consensus        19 ~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~---~~~~~vd~d~~~----------------   79 (123)
T 1oaz_A           19 KADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP----------------   79 (123)
T ss_dssp             SCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC----------CEEEEEETTSCT----------------
T ss_pred             hCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCC---eEEEEEECCCCH----------------
Confidence            3589999999999999              9999999999999888653   778888877654                


Q ss_pred             cccceeeeccccCCCCcch
Q 018266          106 EDLIGLIEDYGADAYPFTR  124 (358)
Q Consensus       106 ~~~~~l~~~~gi~~~P~~~  124 (358)
                          +++++|+|.++|+..
T Consensus        80 ----~l~~~~~v~~~Pt~~   94 (123)
T 1oaz_A           80 ----GTAPKYGIRGIPTLL   94 (123)
T ss_dssp             ----TTGGGGTCCBSSEEE
T ss_pred             ----HHHHHcCCCccCEEE
Confidence                578899999999643

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=98.96  E-value=7.7e-10  Score=95.65  Aligned_cols=65  Identities=17%  Similarity=0.260  Sum_probs=55.7

Q ss_pred             ccCccc-ccCCCCceecccCCCC--EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LLSRQGKVPLSSCGGK--TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~~~~g~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...++| +.+.+|.+++++++||  +||+.||++||++|...+|.|.++++++++.+  ++++.|++|..
T Consensus         9 ~~aP~F~l~~~~G~v~l~d~~Gk~~vvL~~~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~IS~D~~   76 (224)
T 1prx_A            9 DVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSV   76 (224)
T ss_dssp             CBCCCCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCCcEEecCCCCEEHHHHcCCCeEEEEEECCCCCCCcHHHHHHHHHHHHHHHHCC--CEEEEEcCCCH
Confidence            344566 7788888999999998  56666789999999999999999999998877  99999999853

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=98.96  E-value=9.3e-11  Score=92.63  Aligned_cols=60  Identities=12%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             CCCEEEEEEeCCC--ChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC
Q 018266           41 GGKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        41 ~gk~vlv~F~a~w--C~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~  118 (358)
                      .+++|+|+|||+|  |++|+++.|.++++++++.++.  +.++.|++|.+.                    +++.+|||.
T Consensus        33 ~~~~vlVdF~a~~crCgpCk~iaPvleela~e~~g~~--v~~~KVdvDe~~--------------------~lA~~ygV~   90 (140)
T 2qgv_A           33 QAPDGVVLLSSDPKRTPEVSDNPVMIGELLHEFPDYT--WQVAIADLEQSE--------------------AIGDRFGAF   90 (140)
T ss_dssp             TCSSEEEEECCCTTTCTTTTHHHHHHHHHHTTCTTSC--CEEEECCHHHHH--------------------HHHHHHTCC
T ss_pred             CCCCEEEEEeCCcccCCcHHHHHhHHHHHHHHcCCCe--EEEEEEECCCCH--------------------HHHHHcCCc
Confidence            4678999999999  9999999999999999886432  567777777555                    466677777


Q ss_pred             CCCc
Q 018266          119 AYPF  122 (358)
Q Consensus       119 ~~P~  122 (358)
                      +.|+
T Consensus        91 sIPT   94 (140)
T 2qgv_A           91 RFPA   94 (140)
T ss_dssp             SSSE
T ss_pred             cCCE
Confidence            7775

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.95  E-value=8.1e-10  Score=87.66  Aligned_cols=42  Identities=10%  Similarity=0.092  Sum_probs=34.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +||+|+|+|||+||++|+.+.|.|.++++++.    ++.++.|+++
T Consensus        29 ~~~~vvv~f~a~wC~~C~~~~p~l~~la~~~~----~v~~~~vd~~   70 (135)
T 2dbc_A           29 KDLWVVIHLYRSSVPMCLVVNQHLSVLARKFP----ETKFVKAIVN   70 (135)
T ss_dssp             SSCEEEEEECCTTCHHHHHHHHHHHHHHHHCS----SEEEEEECCS
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCC----CcEEEEEEhh
Confidence            46899999999999999999999999998873    2556655554

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=98.95  E-value=3.8e-10  Score=88.04  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=51.9

Q ss_pred             ccCCCCEEEEEEeCC-------CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccce
Q 018266           38 SSCGGKTICLFFSAN-------WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIG  110 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~-------wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~  110 (358)
                      .+..||+++|+|||+       ||++|+.+.|.|.++++++.+.   +.++.|+++... .            +.+....
T Consensus        20 ~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l~~~~~~~~~~---~~~~~vd~~~~~-~------------~~d~~~~   83 (123)
T 1wou_A           20 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKP-Y------------WKDPNND   83 (123)
T ss_dssp             HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHH-H------------HHCTTCH
T ss_pred             HHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHHHHHHHHcCCC---cEEEEEECCCch-h------------hhchhHH
Confidence            334589999999999       9999999999999998877542   778888874211 0            0011135


Q ss_pred             eeeccccCCCCcch
Q 018266          111 LIEDYGADAYPFTR  124 (358)
Q Consensus       111 l~~~~gi~~~P~~~  124 (358)
                      ++++|+|.++|+..
T Consensus        84 ~~~~~~i~~~Pt~~   97 (123)
T 1wou_A           84 FRKNLKVTAVPTLL   97 (123)
T ss_dssp             HHHHHCCCSSSEEE
T ss_pred             HHHHCCCCeeCEEE
Confidence            67789999999753

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=98.94  E-value=8e-10  Score=95.28  Aligned_cols=65  Identities=14%  Similarity=0.150  Sum_probs=54.6

Q ss_pred             ccCccc-ccCC--CCceecccCCCC--EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LLSR--QGKVPLSSCGGK--TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~~~--~g~v~l~~~~gk--~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...++| +.+.  +|.+++++++||  +||+.||++||++|...+|.|.++++++++.+  ++++.|++|..
T Consensus         7 ~~aP~F~l~~~~~~G~v~l~d~~Gk~~vvL~f~~a~~cp~C~~el~~l~~l~~~f~~~~--v~vi~vS~D~~   76 (220)
T 1xcc_A            7 ATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSK   76 (220)
T ss_dssp             CBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCCcEeecccCCCcEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHcC--CEEEEEeCCCH
Confidence            344566 7777  778999999998  55555679999999999999999999998876  99999999853

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=98.94  E-value=6.6e-10  Score=85.51  Aligned_cols=58  Identities=26%  Similarity=0.623  Sum_probs=48.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +||+++|+||++||++|+.+.|.|.++++++.  +  +.++.+++|...                    .++++|++.++
T Consensus        27 ~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--~~~~~v~~~~~~--------------------~~~~~~~v~~~   82 (118)
T 2vm1_A           27 TGKLVIIDFTASWCGPCRVIAPVFAEYAKKFP--G--AIFLKVDVDELK--------------------DVAEAYNVEAM   82 (118)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHCT--T--SEEEEEETTTSH--------------------HHHHHTTCCSB
T ss_pred             CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC--C--cEEEEEEcccCH--------------------HHHHHcCCCcC
Confidence            58999999999999999999999999999875  2  778888887655                    35667777777


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        83 Pt   84 (118)
T 2vm1_A           83 PT   84 (118)
T ss_dssp             SE
T ss_pred             cE
Confidence            74

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.93  E-value=4.6e-09  Score=84.84  Aligned_cols=74  Identities=15%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .+|+|+|+|+++||.+|+.+....   .++.+.++    .++.++-+.++..                     ....+.+
T Consensus        41 ~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~----~~fv~v~~d~~~~---------------------~~~~l~~   95 (153)
T 2dlx_A           41 QNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSE---------------------EGQRYIQ   95 (153)
T ss_dssp             HTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSH---------------------HHHHHHH
T ss_pred             cCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHH----cCeEEEEEecCCH---------------------hHHHHHH
Confidence            489999999999999999986543   33334343    3445555555432                     1467889


Q ss_pred             HcCCCceeeEEEECCC-CcEEec
Q 018266          246 IFNIKGIPALVLIGPD-GKTIST  267 (358)
Q Consensus       246 ~~~v~~~P~~~lid~~-G~v~~~  267 (358)
                      .|++.++|++++||++ |+.+..
T Consensus        96 ~y~v~~~P~~~fld~~~G~~l~~  118 (153)
T 2dlx_A           96 FYKLGDFPYVSILDPRTGQKLVE  118 (153)
T ss_dssp             HHTCCSSSEEEEECTTTCCCCEE
T ss_pred             HcCCCCCCEEEEEeCCCCcEeee
Confidence            9999999999999998 766543

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=98.93  E-value=7e-10  Score=105.08  Aligned_cols=63  Identities=8%  Similarity=0.085  Sum_probs=48.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCC-----ceEEEEEEecCChhHHHHHHhhCCCcc
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGT-----ELEVIFISFDHDENGFEEHFKSSDGTL  103 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~-----~~~iv~i~~d~~~~~~~~~~~~~~~~~  103 (358)
                      ++|+|+|+|||+||+||+.++|.|+++++++.....     .+.++.|++|.+.+.+.++.+...+++
T Consensus        41 ~~k~VlV~FyA~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTl  108 (470)
T 3qcp_A           41 PLCPWIVLFYNDGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRL  108 (470)
T ss_dssp             GGSCEEEEEECTTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEE
T ss_pred             CCCeEEEEEECCCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeE
Confidence            458999999999999999999999999999874421     488888888877665555554444433

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.92  E-value=9.7e-10  Score=96.29  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=52.1

Q ss_pred             cCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCC-CceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           39 SCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRG-TELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        39 ~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~-~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++.|+++++.||||||+||+.+.|.|++++..+...+ +++.++.|+++.+.                    +++.+|+|
T Consensus       135 ~~~~~~~vv~F~a~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~--------------------~~~~~~~V  194 (243)
T 2hls_A          135 SLKGRVHIETIITPSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENP--------------------DIADKYGV  194 (243)
T ss_dssp             HCCSCEEEEEEECSSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCH--------------------HHHHHTTC
T ss_pred             HcCCCcEEEEEECCCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCH--------------------HHHHHcCC
Confidence            4678999999999999999999999999999885311 23777777777554                    45677888


Q ss_pred             CCCCcch
Q 018266          118 DAYPFTR  124 (358)
Q Consensus       118 ~~~P~~~  124 (358)
                      .++|+..
T Consensus       195 ~~vPt~~  201 (243)
T 2hls_A          195 MSVPSIA  201 (243)
T ss_dssp             CSSSEEE
T ss_pred             eeeCeEE
Confidence            8888643

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=98.91  E-value=6.8e-09  Score=96.59  Aligned_cols=71  Identities=11%  Similarity=0.099  Sum_probs=57.1

Q ss_pred             CCcEEEEEEeccCCcccHhhH------HHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFT------SQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  242 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~------~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+++++|.|||+||++|....      |.+.++++.++.   .++.++.|.++..                       ..
T Consensus        29 ~~~~vlV~FyApWC~~~~~~~~l~~~~p~~e~~a~~~~~---~~v~~~~Vd~~~~-----------------------~~   82 (367)
T 3us3_A           29 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEKD-----------------------AA   82 (367)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHHTT---TTEEEEEEETTTT-----------------------HH
T ss_pred             hCCeEEEEEECCCchhHHHhhhhccccHHHHHHHHHhhc---CCceEEEEeCccc-----------------------HH
Confidence            368999999999999973322      578888888864   5688888888764                       68


Q ss_pred             HHHHcCCCceeeEEEECCCCcEEe
Q 018266          243 LCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       243 l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                      ++++|+|+++||++++ ++|+++.
T Consensus        83 l~~~~~V~~~PTl~~f-~~G~~~~  105 (367)
T 3us3_A           83 VAKKLGLTEEDSIYVF-KEDEVIE  105 (367)
T ss_dssp             HHHHHTCCSTTEEEEE-ETTEEEE
T ss_pred             HHHHcCCCcCceEEEE-ECCcEEE
Confidence            9999999999999999 5787653

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=98.90  E-value=1.5e-10  Score=95.15  Aligned_cols=52  Identities=13%  Similarity=0.501  Sum_probs=42.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ++.+..+||+|+|+|||+||++|+.+.|.|.++++.....   +.++.|++|.+.
T Consensus        39 ~~~~~~~~k~vlv~F~a~WC~~C~~~~p~l~~~~~~~~~~---~~~~~v~~d~~~   90 (164)
T 1sen_A           39 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISELS---HNFVMVNLEDEE   90 (164)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHHH---TTSEEEEEEGGG
T ss_pred             HHHHHhcCCeEEEEEECCCCHHHHHHHHHHHHHHHHhhcC---CeEEEEEecCCc
Confidence            6666678999999999999999999999999987665432   568888887654

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=98.87  E-value=1.4e-09  Score=94.89  Aligned_cols=58  Identities=16%  Similarity=0.242  Sum_probs=48.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +|++|+|.|||+||++|+.+.|.|.++++++..    +.++.|+++.  .                   .++.+|+|.++
T Consensus       132 ~~k~VvV~Fya~wC~~Ck~l~p~l~~La~~~~~----v~f~kVd~d~--~-------------------~l~~~~~I~~~  186 (245)
T 1a0r_P          132 KITTIVVHIYEDGIKGCDALNSSLICLAAEYPM----VKFCKIKASN--T-------------------GAGDRFSSDVL  186 (245)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHHHCTT----SEEEEEEHHH--H-------------------CCTTSSCTTTC
T ss_pred             CCCEEEEEEECCCChHHHHHHHHHHHHHHHCCC----CEEEEEeCCc--H-------------------HHHHHCCCCCC
Confidence            489999999999999999999999999998753    6677777653  1                   47788999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       187 PTl  189 (245)
T 1a0r_P          187 PTL  189 (245)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            964

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=98.87  E-value=2.8e-09  Score=92.09  Aligned_cols=69  Identities=19%  Similarity=0.337  Sum_probs=56.2

Q ss_pred             cCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          168 LAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       168 ~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      ..+++++++||++ ||++|+.+.|.|.++++. .    .++.++.|+++...                     ...++++
T Consensus        20 ~~~~v~lv~f~~~~~C~~C~~~~~~~~~la~~-~----~~v~~~~vd~~~~~---------------------~~~~~~~   73 (226)
T 1a8l_A           20 MVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-T----DKLSYEIVDFDTPE---------------------GKELAKR   73 (226)
T ss_dssp             CCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-C----TTEEEEEEETTSHH---------------------HHHHHHH
T ss_pred             cCCCeEEEEEecCCCCchhHHHHHHHHHHHhh-C----CceEEEEEeCCCcc---------------------cHHHHHH
Confidence            4457888999999 999999999999998753 2    56888888887521                     3689999


Q ss_pred             cCCCceeeEEEECCCCc
Q 018266          247 FNIKGIPALVLIGPDGK  263 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~  263 (358)
                      |+|.++||++++ ++|+
T Consensus        74 ~~v~~~Pt~~~~-~~g~   89 (226)
T 1a8l_A           74 YRIDRAPATTIT-QDGK   89 (226)
T ss_dssp             TTCCSSSEEEEE-ETTB
T ss_pred             cCCCcCceEEEE-cCCc
Confidence            999999999999 5554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.86  E-value=3.7e-08  Score=95.96  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=57.7

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      +.++..++.||++||++|+.+.|.|+++..++.     ++.+..|..+..                       .+++++|
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~-----~v~~~~vd~~~~-----------------------~~~~~~~  166 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP-----RIKHTAIDGGTF-----------------------QNEITER  166 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT-----TEEEEEEETTTC-----------------------HHHHHHT
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC-----ceEEEEEechhh-----------------------HHHHHHh
Confidence            346788999999999999999999999987763     477777777753                       6899999


Q ss_pred             CCCceeeEEEECCCCcEEec
Q 018266          248 NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~  267 (358)
                      +|.++|++++   +|+.+..
T Consensus       167 ~i~svPt~~i---~g~~~~~  183 (521)
T 1hyu_A          167 NVMGVPAVFV---NGKEFGQ  183 (521)
T ss_dssp             TCCSSSEEEE---TTEEEEE
T ss_pred             CCCccCEEEE---CCEEEec
Confidence            9999999977   8888755

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=98.85  E-value=3.6e-10  Score=89.68  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCc
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      +++|+|||+||++|+.++|.|.+++++++     +.++.|+++.+...           ...+....++++|+|.++|+
T Consensus        33 ~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-----v~~~~vd~~~~~~~-----------~~~d~~~~l~~~~~v~~~Pt   95 (135)
T 3emx_A           33 DAILAVYSKTCPHCHRDWPQLIQASKEVD-----VPIVMFIWGSLIGE-----------RELSAARLEMNKAGVEGTPT   95 (135)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHTTCC-----SCEEEEEECTTCCH-----------HHHHHHHHHHHHHTCCSSSE
T ss_pred             cEEEEEECCcCHhhhHhChhHHHHHHHCC-----CEEEEEECCCchhh-----------hhhhhhHHHHHHcCCceeCe
Confidence            99999999999999999999999988764     66888888542110           00011135677888888885

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=98.85  E-value=2.7e-09  Score=91.49  Aligned_cols=89  Identities=15%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEeCCC-Chhhh-----hhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHH
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANW-CRPCK-----TFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE   93 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~w-C~~C~-----~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~   93 (358)
                      ...++| |.+.+|+ ++|++++||+|+|+||+.| |++|.     ..+|.|.++   +  .|  ++|+.||.|. .....
T Consensus        26 ~~APdFtL~d~~G~~vsLsd~~Gk~vVL~F~ps~~cp~C~~~~~~~El~~~~~~---~--~g--v~VvgIS~Ds-~~~~~   97 (224)
T 3keb_A           26 DYLPSFMLVDDQKHDAALESFSHTPKLIVTLLSVDEDEHAGLLLLRETRRFLDS---W--PH--LKLIVITVDS-PSSLA   97 (224)
T ss_dssp             CBCCCCEEEETTSCEEEGGGGTTCCEEEEECSCTTCSTTTSHHHHHHHHHHHTT---C--TT--SEEEEEESSC-HHHHH
T ss_pred             CCCCCeEEECCCCCEEeHHHhCCCcEEEEEEeCCCCCCCCCCccHHHHHHHHHH---c--CC--CEEEEEECCC-HHHHH
Confidence            345567 8899999 9999999999999999888 99999     888888776   3  34  8999999984 44455


Q ss_pred             HHHhhC---CCcccccc-cceeeeccccC
Q 018266           94 EHFKSS---DGTLIEED-LIGLIEDYGAD  118 (358)
Q Consensus        94 ~~~~~~---~~~~~~~~-~~~l~~~~gi~  118 (358)
                      +|....   ...++.+. ...+++.||+.
T Consensus        98 ~f~~~~gl~~fplLsD~~~~~vak~yGv~  126 (224)
T 3keb_A           98 RARHEHGLPNIALLSTLRGRDFHKRYGVL  126 (224)
T ss_dssp             HHHHHHCCTTCEEEESTTCTTHHHHTTCB
T ss_pred             HHHHHcCCCCceEEEcCCchHHHHHhCCc
Confidence            554442   23455554 46677777764

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=98.35  E-value=3e-10  Score=85.39  Aligned_cols=61  Identities=23%  Similarity=0.546  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|.||++||++|+.+.|.+.++++.+...   +.++.++++.+.                    .++++|++.++
T Consensus        18 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~--------------------~~~~~~~v~~~   74 (106)
T 2yj7_A           18 SDKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGK---VKVVKVNVDENP--------------------NTAAQYGIRSI   74 (106)
Confidence            5799999999999999999999999999988653   667777666443                    57899999999


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        75 Pt~~   78 (106)
T 2yj7_A           75 PTLL   78 (106)
Confidence            9754

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=98.84  E-value=4.5e-10  Score=92.63  Aligned_cols=51  Identities=10%  Similarity=0.169  Sum_probs=38.7

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHH-H--HHHHHHHhcCCCceEEEEEEecCC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQ-L--VQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~-~--~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +..+..+||+|+|.|||+||++|+.|.|. |  .++++.+++.   +.++.|+.|..
T Consensus        32 ~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~---fv~ikVD~de~   85 (173)
T 3ira_A           32 FEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEA---FVSIKVDREER   85 (173)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHH---CEEEEEETTTC
T ss_pred             HHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhc---CceeeeCCccc
Confidence            77777789999999999999999999993 3  5677777654   55555554433

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.84  E-value=1.1e-08  Score=80.84  Aligned_cols=68  Identities=12%  Similarity=0.200  Sum_probs=57.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+++||++ |++|+.+.|.|.+++++|+    .++.++.|++|..                       ..++..||
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~----gk~~f~~vd~d~~-----------------------~~~a~~~g   73 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQR----GVINFGTIDAKAF-----------------------GAHAGNLN   73 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSST----TTSEEEEECTTTT-----------------------GGGTTTTT
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhC----CeEEEEEEchHHh-----------------------HHHHHHcC
Confidence            357899999999 8999999999999999987    5688888887753                       46888999


Q ss_pred             CCc--eeeEEEECC-CCcE
Q 018266          249 IKG--IPALVLIGP-DGKT  264 (358)
Q Consensus       249 v~~--~P~~~lid~-~G~v  264 (358)
                      |++  +|++++++. +|+.
T Consensus        74 i~~~~iPtl~i~~~~~g~~   92 (133)
T 2djk_A           74 LKTDKFPAFAIQEVAKNQK   92 (133)
T ss_dssp             CCSSSSSEEEEECTTTCCB
T ss_pred             CCcccCCEEEEEecCcCcc
Confidence            999  999999964 4665

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=98.83  E-value=2.9e-09  Score=85.93  Aligned_cols=49  Identities=10%  Similarity=0.183  Sum_probs=36.6

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHH--HHhcCCCceEEEEEEecC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYD--TLRTRGTELEVIFISFDH   87 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~--~l~~~~~~~~iv~i~~d~   87 (358)
                      +..+..+||+|+|+|||+||++|+.+.|.+.+..+  .+.+    ..++.|++|.
T Consensus        37 l~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~----~~fv~V~vD~   87 (151)
T 3ph9_A           37 LFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQ----NKFIMLNLMH   87 (151)
T ss_dssp             HHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHH----HTCEEEEESS
T ss_pred             HHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhh----cCeEEEEecC
Confidence            55555679999999999999999999999986422  2222    1277788874

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.82  E-value=2.4e-09  Score=76.64  Aligned_cols=65  Identities=28%  Similarity=0.423  Sum_probs=48.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.||++||++|+...+.|.++.+++.      +.+..+.+|.+.                    ....+.++||++++|
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~~------~~~~~~~v~~~~--------------------~~~~~~~~~gv~~vP   57 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPSK------YTVEIVHLGTDK--------------------ARIAEAEKAGVKSVP   57 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTTT------EEEEEEETTTCS--------------------STHHHHHHHTCCEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhcC------CeEEEEEecCCh--------------------hhHHHHHHcCCCcCC
Confidence            567999999999999999988765443      455566666421                    025677899999999


Q ss_pred             eEEEECCCCcEEec
Q 018266          254 ALVLIGPDGKTIST  267 (358)
Q Consensus       254 ~~~lid~~G~v~~~  267 (358)
                      ++++   +|+++..
T Consensus        58 t~~i---~g~~~~~   68 (80)
T 2k8s_A           58 ALVI---DGAAFHI   68 (80)
T ss_dssp             EEEE---TTEEEEE
T ss_pred             EEEE---CCEEEEe
Confidence            9877   7887654

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=98.81  E-value=5.1e-09  Score=90.67  Aligned_cols=66  Identities=15%  Similarity=0.278  Sum_probs=53.5

Q ss_pred             CCcEEEEEE----eccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          169 AGKTIGLYF----GAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       169 ~~k~vlv~F----~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      .+.++++.|    |++||++|+.++|.+.++++++..  .+++.++.|.++..                       ..++
T Consensus        20 ~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~--~~~v~~~~vd~~~~-----------------------~~l~   74 (229)
T 2ywm_A           20 KEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVG--QDKIKLDIYSPFTH-----------------------KEET   74 (229)
T ss_dssp             CSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHC--TTTEEEEEECTTTC-----------------------HHHH
T ss_pred             cCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCC--CCceEEEEecCccc-----------------------HHHH
Confidence            344555556    599999999999999999888842  25688888877754                       6899


Q ss_pred             HHcCCCceeeEEEEC
Q 018266          245 RIFNIKGIPALVLIG  259 (358)
Q Consensus       245 ~~~~v~~~P~~~lid  259 (358)
                      ++|+|+++||+++++
T Consensus        75 ~~~~v~~~Ptl~~~~   89 (229)
T 2ywm_A           75 EKYGVDRVPTIVIEG   89 (229)
T ss_dssp             HHTTCCBSSEEEEES
T ss_pred             HHcCCCcCcEEEEEC
Confidence            999999999999994

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=98.81  E-value=6.9e-10  Score=87.04  Aligned_cols=59  Identities=25%  Similarity=0.603  Sum_probs=47.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+++|+||++||++|+.+.|.|.++++++.  +  +.++.|++|.+.                    .++++|++.+
T Consensus        34 ~~~~~~vv~f~~~~C~~C~~~~~~l~~~~~~~~--~--v~~~~v~~~~~~--------------------~~~~~~~v~~   89 (130)
T 1wmj_A           34 EAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFP--G--AVFLKVDVDELK--------------------EVAEKYNVEA   89 (130)
T ss_dssp             TTTCBCBEECCSSSCSCSSSSHHHHHHHHHHCT--T--BCCEECCTTTSG--------------------GGHHHHTCCS
T ss_pred             hcCCEEEEEEECCCChhHHHHHHHHHHHHHHCC--C--CEEEEEeccchH--------------------HHHHHcCCCc
Confidence            468999999999999999999999999999875  2  667777777554                    4566677777


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        90 ~Pt   92 (130)
T 1wmj_A           90 MPT   92 (130)
T ss_dssp             SCC
T ss_pred             cce
Confidence            775

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=98.81  E-value=1.6e-08  Score=93.68  Aligned_cols=165  Identities=13%  Similarity=0.120  Sum_probs=97.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      .++++|-|+.+-+..+   ...|.++++.+ + +  +.++.+  . +.+                    +++.|++.. |
T Consensus        35 ~~~~vvgff~~~~~~~---~~~f~~~A~~~-~-~--~~F~~t--~-~~~--------------------v~~~~~v~~-~   83 (361)
T 3uem_A           35 SEVAVIGFFKDVESDS---AKQFLQAAEAI-D-D--IPFGIT--S-NSD--------------------VFSKYQLDK-D   83 (361)
T ss_dssp             SSEEEEEECSCTTSHH---HHHHHHHHHHC-S-S--SCEEEE--C-CHH--------------------HHHHTTCSS-S
T ss_pred             CCcEEEEEEcCCCchH---HHHHHHHHhcC-C-C--ceEEEE--C-cHH--------------------HHHHhCCCC-C
Confidence            5788888887665543   46788888887 3 2  444333  2 232                    344444443 2


Q ss_pred             cchHhH--HHHHhhhhhhhccchhhHhhhhccCCceecCCCceee-ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHH
Q 018266          122 FTRKRR--EELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKIT-VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNE  198 (358)
Q Consensus       122 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~-l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~  198 (358)
                      ......  .+-...+.+......+..++.....+.....+.+... +-.-..++++|+|+++||++|..+.+.|.+++++
T Consensus        84 ~i~lfk~f~~~~~~~~g~~~~~~i~~fi~~~~~p~v~~~~~~~~~~~~~~~~~~~~v~F~~~~~~~~~~~~~~~~~~A~~  163 (361)
T 3uem_A           84 GVVLFKKFDEGRNNFEGEVTKENLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSNFKTAAES  163 (361)
T ss_dssp             EEEEEESSTTSEEECCSCCCHHHHHHHHHHHSSCSEEECSTTTHHHHHSCSCCEEEEEECCSSSSSHHHHHHHHHHHHGG
T ss_pred             eEEEEEecCCCccccCCcCCHHHHHHHHHHcCCCcceecCcccHHHHhcCCCCcEEEEEEeCCchhHHHHHHHHHHHHHH
Confidence            111000  0000111222233445555544433333333332221 1111235789999999999999999999999999


Q ss_pred             hhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc--eeeEEEECCCC
Q 018266          199 LKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG--IPALVLIGPDG  262 (358)
Q Consensus       199 ~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~--~P~~~lid~~G  262 (358)
                      ++    ..+.++.|.++...                     ...+++.||+.+  +|++++++.++
T Consensus       164 ~~----~~i~f~~vd~~~~~---------------------~~~~~~~fgi~~~~~P~~~~~~~~~  204 (361)
T 3uem_A          164 FK----GKILFIFIDSDHTD---------------------NQRILEFFGLKKEECPAVRLITLEE  204 (361)
T ss_dssp             GT----TTCEEEEECTTSGG---------------------GHHHHHHTTCCTTTCSEEEEEECC-
T ss_pred             cc----CceEEEEecCChHH---------------------HHHHHHHcCCCccCCccEEEEEcCC
Confidence            97    45677777666322                     478899999988  99999996644

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=98.81  E-value=2e-09  Score=92.53  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +|++|+|.||++||++|+.+.|.|.++++++.    .+.++.|+++ +                    ..++.+|+|.++
T Consensus       119 ~~k~vvV~F~a~wC~~C~~l~p~l~~la~~~~----~v~f~~vd~~-~--------------------~~l~~~~~i~~~  173 (217)
T 2trc_P          119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYP----MVKFCKIRAS-N--------------------TGAGDRFSSDVL  173 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCT----TSEEEEEEHH-H--------------------HTCSTTSCGGGC
T ss_pred             CCcEEEEEEECCCCccHHHHHHHHHHHHHHCC----CeEEEEEECC-c--------------------HHHHHHCCCCCC
Confidence            46999999999999999999999999998874    3778888877 2                    257888999999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       174 PTl  176 (217)
T 2trc_P          174 PTL  176 (217)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            964

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.81  E-value=9.8e-09  Score=77.39  Aligned_cols=64  Identities=20%  Similarity=0.456  Sum_probs=53.2

Q ss_pred             EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCc
Q 018266          172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKG  251 (358)
Q Consensus       172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~  251 (358)
                      .+++.||++||++|+...+.|.++.+++.      +.+..|++|.+                       .+++++|+++ 
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~~------i~~~~vDId~d-----------------------~~l~~~ygv~-   79 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKSW------FELEVINIDGN-----------------------EHLTRLYNDR-   79 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHSC------CCCEEEETTTC-----------------------HHHHHHSTTS-
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhcC------CeEEEEECCCC-----------------------HHHHHHhCCC-
Confidence            56889999999999999999999987753      56777888865                       4678889997 


Q ss_pred             eeeEEEECCCCcEEe
Q 018266          252 IPALVLIGPDGKTIS  266 (358)
Q Consensus       252 ~P~~~lid~~G~v~~  266 (358)
                      +|+++++ .+|+++.
T Consensus        80 VP~l~~~-~dG~~v~   93 (107)
T 2fgx_A           80 VPVLFAV-NEDKELC   93 (107)
T ss_dssp             CSEEEET-TTTEEEE
T ss_pred             CceEEEE-ECCEEEE
Confidence            9999888 6788763

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=98.78  E-value=4.7e-09  Score=74.18  Aligned_cols=54  Identities=17%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             EEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcch
Q 018266           45 ICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFTR  124 (358)
Q Consensus        45 vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~~  124 (358)
                      +.|.||++||++|+.+.|.++++++++...   +.++.++   +.                    +++++||+.++|+..
T Consensus         2 ~~v~f~a~wC~~C~~~~~~l~~~~~~~~~~---~~~~~v~---~~--------------------~~~~~~~v~~~Pt~~   55 (77)
T 1ilo_A            2 MKIQIYGTGCANCQMLEKNAREAVKELGID---AEFEKIK---EM--------------------DQILEAGLTALPGLA   55 (77)
T ss_dssp             EEEEEECSSSSTTHHHHHHHHHHHHHTTCC---EEEEEEC---SH--------------------HHHHHHTCSSSSCEE
T ss_pred             cEEEEEcCCChhHHHHHHHHHHHHHHcCCc---eEEEEec---CH--------------------HHHHHCCCCcCCEEE
Confidence            468999999999999999999999987643   5555554   33                    456777888888643

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.77  E-value=1.1e-08  Score=74.27  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=45.5

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.||++||++|+...|.|.++..++         +.-|++|.+                       .+++++|+++ +|
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~---------~~~vdid~~-----------------------~~l~~~~g~~-vP   49 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA---------FFSVFIDDD-----------------------AALESAYGLR-VP   49 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC---------EEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh---------eEEEECCCC-----------------------HHHHHHhCCC-cC
Confidence            67899999999999999887653221         455777765                       5688899998 99


Q ss_pred             eEEEECCCCcEEe
Q 018266          254 ALVLIGPDGKTIS  266 (358)
Q Consensus       254 ~~~lid~~G~v~~  266 (358)
                      ++++  .+|+.+.
T Consensus        50 tl~~--~~G~~v~   60 (87)
T 1ttz_A           50 VLRD--PMGRELD   60 (87)
T ss_dssp             EEEC--TTCCEEE
T ss_pred             eEEE--ECCEEEe
Confidence            9987  6788874

>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A

Probab=98.74  E-value=2.7e-08  Score=86.10  Aligned_cols=167  Identities=13%  Similarity=0.102  Sum_probs=104.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|-|+++|   |....+.|.++|+.+. .   +.+....   +.                    +++.+|++.. 
T Consensus        26 ~~~v~vVgff~~~---~~~~~~~f~~~A~~l~-~---~~F~~t~---~~--------------------~v~~~~~v~~-   74 (227)
T 4f9z_D           26 ATEVAVIGFFQDL---EIPAVPILHSMVQKFP-G---VSFGIST---DS--------------------EVLTHYNITG-   74 (227)
T ss_dssp             TSSEEEEEECSCS---CSTHHHHHHHHTTTCT-T---SEEEEEC---CH--------------------HHHHHTTCCS-
T ss_pred             cCCeEEEEEecCC---CchhHHHHHHHHHhCC-C---ceEEEEC---CH--------------------HHHHHcCCCC-
Confidence            3689999999998   5788999999999884 2   5554432   23                    2455566554 


Q ss_pred             CcchHhHH------HHHhhhhhhhccchhhHhhhhccCCceecCCCceeeecccCC-cEEEEEEeccCCcccHhhHHHHH
Q 018266          121 PFTRKRRE------ELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAG-KTIGLYFGAHWCPPCRSFTSQLI  193 (358)
Q Consensus       121 P~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~~-k~vlv~F~a~wC~~C~~~~~~l~  193 (358)
                      |+......      .+...+.+.+....+..++.....+.....+.+....---.+ +.+++.|..+||+.|....+.+.
T Consensus        75 p~i~lfk~~~~~~~~~~~~~~g~~~~~~l~~fi~~~~~plv~e~t~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~~~~  154 (227)
T 4f9z_D           75 NTICLFRLVDNEQLNLEDEDIESIDATKLSRFIEINSLHMVTEYNPVTVIGLFNSVIQIHLLLIMNKASPEYEENMHRYQ  154 (227)
T ss_dssp             SEEEEEETTTTEEEEECHHHHHTCCHHHHHHHHHHHCCCSEEECCHHHHHHHHHSSCCEEEEEEECTTSTTHHHHHHHHH
T ss_pred             CeEEEEEecCcccccccccccCCCCHHHHHHHHHHhCCCceeecCcccHHHHhccCCceEEEEEEcCCcchHHHHHHHHH
Confidence            53211110      011111123344566777766654444344433211100122 45666777889999999999999


Q ss_pred             HHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCC--ceeeEEEECCCCc
Q 018266          194 EVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK--GIPALVLIGPDGK  263 (358)
Q Consensus       194 ~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~  263 (358)
                      +++++++    .++.++++..+...                     ...+.+.||+.  .+|++.+++..+.
T Consensus       155 ~vAk~~k----~~i~F~~vd~~~~~---------------------~~~~l~~fgl~~~~~P~~~i~~~~~~  201 (227)
T 4f9z_D          155 KAAKLFQ----GKILFILVDSGMKE---------------------NGKVISFFKLKESQLPALAIYQTLDD  201 (227)
T ss_dssp             HHHHHTT----TTCEEEEEETTSGG---------------------GHHHHHHTTCCGGGCSEEEEEESSSC
T ss_pred             HHHHHhh----CCEEEEEeCCccHh---------------------HHHHHHHcCCCcccCCEEEEEECCCC
Confidence            9999998    45777777776422                     35677899998  8999999975544

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=98.73  E-value=1.9e-08  Score=91.57  Aligned_cols=90  Identities=20%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      +.-++| |++.+|+ ++|++++||+|+|+|| +.||+.|...++.|.+      ...++++|+.||.|. ..+.++|...
T Consensus         2 ak~p~F~l~~~~G~~~~Lsd~~Gk~vvl~F~p~~~tp~C~~e~~~~~~------~~~~~~~v~gis~D~-~~~~~~f~~~   74 (322)
T 4eo3_A            2 ARVKHFELLTDEGKTFTHVDLYGKYTILFFFPKAGTSGSTREAVEFSR------ENFEKAQVVGISRDS-VEALKRFKEK   74 (322)
T ss_dssp             CBCCCCEEEETTSCEEEGGGTTTSEEEEEECSSTTSHHHHHHHHHHHH------SCCTTEEEEEEESCC-HHHHHHHHHH
T ss_pred             CCCCCcEEECCCcCEEeHHHhCCCeEEEEEECCCCCCCCHHHHHHHHH------HhhCCCEEEEEeCCC-HHHHHHHHHh
Confidence            345677 9999999 9999999999999999 6799999988887753      122348999999984 4444555444


Q ss_pred             --CCCcccccccceeeeccccC
Q 018266           99 --SDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        99 --~~~~~~~~~~~~l~~~~gi~  118 (358)
                        ....++.+....+++.||+.
T Consensus        75 ~~l~fp~l~D~~~~v~~~ygv~   96 (322)
T 4eo3_A           75 NDLKVTLLSDPEGILHEFFNVL   96 (322)
T ss_dssp             HTCCSEEEECTTCHHHHHTTCE
T ss_pred             hCCceEEEEcCchHHHHhcCCC
Confidence              22356666667888888874

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.72  E-value=6.7e-08  Score=84.34  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=59.4

Q ss_pred             cCCCceeeecccCCcEEEEEEe--ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC--CHHHHHHhhhcCCccc
Q 018266          157 SRDHRKITVSELAGKTIGLYFG--AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR--DHKEFDLNHSIMPWLA  232 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~--a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~--~~~~~~~~~~~~~~~~  232 (358)
                      .++...+.-.--.+++|+|.||  |+||+    +.|.|.++++++.. ...++.|+.|++|.  +.              
T Consensus        20 ~Lt~~nF~~vi~~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~-~~~~v~~akVD~d~~g~~--------------   80 (248)
T 2c0g_A           20 DLDELSFEKTVERFPYSVVKFDIASPYGE----KHEAFTAFSKSAHK-ATKDLLIATVGVKDYGEL--------------   80 (248)
T ss_dssp             ECCTTTHHHHHTTSSEEEEEEEESSCCSH----HHHHHHHHHHHHHH-HCSSEEEEEEEECSSTTC--------------
T ss_pred             ECCHHHHHHHHhcCCCEEEEEECCCCCCc----cHHHHHHHHHHHhc-cCCCeEEEEEECCccccc--------------
Confidence            4444444321124589999999  99998    99999999999862 12578888888775  10              


Q ss_pred             cccCchhHHHHHHHcCCC--ceeeEEEECCCCc
Q 018266          233 IPYEDRARQDLCRIFNIK--GIPALVLIGPDGK  263 (358)
Q Consensus       233 ~~~~~~~~~~l~~~~~v~--~~P~~~lid~~G~  263 (358)
                            .+..++++|+|+  ++||+++| + |+
T Consensus        81 ------~n~~la~~~~V~~~~~PTl~~F-~-G~  105 (248)
T 2c0g_A           81 ------ENKALGDRYKVDDKNFPSIFLF-K-GN  105 (248)
T ss_dssp             ------TTHHHHHHTTCCTTSCCEEEEE-S-SS
T ss_pred             ------ccHHHHHHhCCCcCCCCeEEEE-e-CC
Confidence                  026899999999  99999999 4 76

>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A

Probab=98.71  E-value=5.2e-09  Score=91.38  Aligned_cols=131  Identities=11%  Similarity=0.075  Sum_probs=79.8

Q ss_pred             CCCEEEEEEe--CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC--C-hhHHHHHHhhCCCcccccccceeeecc
Q 018266           41 GGKTICLFFS--ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH--D-ENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        41 ~gk~vlv~F~--a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~--~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .+++|+|+||  ||||+    +.|.|+++++++.....++.|+.|+|+.  + +.                  ..++.+|
T Consensus        32 ~~~~vlV~Fy~~ApWCg----l~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n------------------~~la~~~   89 (248)
T 2c0g_A           32 RFPYSVVKFDIASPYGE----KHEAFTAFSKSAHKATKDLLIATVGVKDYGELEN------------------KALGDRY   89 (248)
T ss_dssp             TSSEEEEEEEESSCCSH----HHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTT------------------HHHHHHT
T ss_pred             cCCCEEEEEECCCCCCc----cHHHHHHHHHHHhccCCCeEEEEEECCccccccc------------------HHHHHHh
Confidence            4689999999  99998    9999999999997522347888888876  1 01                  2588999


Q ss_pred             ccC--CCCcchHhHHHH--Hhhh--hhhhccchhhHhhhhccCCceecCCCceeeecccCCcEEEEEEeccCCcccHhhH
Q 018266          116 GAD--AYPFTRKRREEL--KAID--DSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFT  189 (358)
Q Consensus       116 gi~--~~P~~~~~~~~~--~~~~--~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~  189 (358)
                      +|.  +||+........  ...+  .+.+....+..++......+. ...|..-.+..+     +-.|.+.||..|...+
T Consensus        90 ~V~~~~~PTl~~F~G~~~~~~~y~~~G~~~~~~L~~fi~~~~~~~~-~~~g~i~~~d~l-----~~~f~~~~~~~~~~~~  163 (248)
T 2c0g_A           90 KVDDKNFPSIFLFKGNADEYVQLPSHVDVTLDNLKAFVSANTPLYI-GRDGCIKEFNEV-----LKNYANIPDAEQLKLI  163 (248)
T ss_dssp             TCCTTSCCEEEEESSSSSSEEECCTTSCCCHHHHHHHHHHHSSCCC-CCTTCCHHHHHH-----HTTGGGSCHHHHHHHH
T ss_pred             CCCcCCCCeEEEEeCCcCcceeecccCCCCHHHHHHHHHHhhcccc-CCCCchHHHHHH-----HHHHhcccchhHHHHH
Confidence            999  999755332110  0111  223333445555543322111 222322222222     2247888888887777


Q ss_pred             HHHHHHHHHh
Q 018266          190 SQLIEVYNEL  199 (358)
Q Consensus       190 ~~l~~l~~~~  199 (358)
                      ..+++..+.+
T Consensus       164 ~~~~~~~~~l  173 (248)
T 2c0g_A          164 EKLQAKQEQL  173 (248)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHc
Confidence            7777765554

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=98.70  E-value=2.1e-08  Score=82.62  Aligned_cols=80  Identities=14%  Similarity=0.282  Sum_probs=60.0

Q ss_pred             eecccC-CCCEEEE-EEeCCCChhhhh-hhHHHHHHHHHHhcCCCce-EEEEEEecCChhHHHHHHhhCC----Cccccc
Q 018266           35 VPLSSC-GGKTICL-FFSANWCRPCKT-FTPQLVQLYDTLRTRGTEL-EVIFISFDHDENGFEEHFKSSD----GTLIEE  106 (358)
Q Consensus        35 v~l~~~-~gk~vlv-~F~a~wC~~C~~-~~p~~~~~~~~l~~~~~~~-~iv~i~~d~~~~~~~~~~~~~~----~~~~~~  106 (358)
                      ++|+++ +||.++| .|++.|||.|.. .+|.|.+.+++|++.|  + +|+.|++|. .....++.....    ..++.+
T Consensus        39 vsLsd~~~Gk~vVL~fyP~~~tp~Ct~~El~~f~~~~~ef~~~g--~d~VigIS~D~-~~~~~~f~~~~~l~~~f~lLsD  115 (176)
T 4f82_A           39 CSVRDQVAGKRVVIFGLPGAFTPTCSAQHVPGYVEHAEQLRAAG--IDEIWCVSVND-AFVMGAWGRDLHTAGKVRMMAD  115 (176)
T ss_dssp             EEHHHHHTTCEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTT--CCEEEEEESSC-HHHHHHHHHHTTCTTTSEEEEC
T ss_pred             EeHHHHhCCCeEEEEEEcCCCCCCCCHHHHHHHHHHHHHHHhCC--CCEEEEEeCCC-HHHHHHHHHHhCCCCCceEEEc
Confidence            999997 9996655 455999999999 9999999999999988  8 899999995 445555544321    344555


Q ss_pred             ccceeeecccc
Q 018266          107 DLIGLIEDYGA  117 (358)
Q Consensus       107 ~~~~l~~~~gi  117 (358)
                      ...++++.||+
T Consensus       116 ~~~~va~ayGv  126 (176)
T 4f82_A          116 GSAAFTHALGL  126 (176)
T ss_dssp             TTCHHHHHHTC
T ss_pred             CchHHHHHhCC
Confidence            55556666665

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.69  E-value=1e-07  Score=81.75  Aligned_cols=92  Identities=21%  Similarity=0.226  Sum_probs=59.3

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHH
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDL  223 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~  223 (358)
                      +.+....+|++++.||++|||+|+.+.|.|.++.+       .++.|+++.+.-   ..                ..|.+
T Consensus        79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~-------~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~  151 (216)
T 1eej_A           79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA-------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDD  151 (216)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHH
T ss_pred             eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHH
Confidence            44444568999999999999999999999887743       246777765431   11                12322


Q ss_pred             hhhcCCc--cccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018266          224 NHSIMPW--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  263 (358)
Q Consensus       224 ~~~~~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~  263 (358)
                      ++.....  .......+....++++|||+++|++++.  +|+
T Consensus       152 ~~~~~~~~~~~~~~~v~~~~~l~~~~gV~gtPt~v~~--dG~  191 (216)
T 1eej_A          152 VMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLS--NGT  191 (216)
T ss_dssp             HHTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEECT--TSC
T ss_pred             HHhCCCCChhHHHHHHHHHHHHHHHcCCCccCEEEEc--CCe
Confidence            2222211  0122234556789999999999999553  454

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=98.68  E-value=1.8e-07  Score=77.29  Aligned_cols=50  Identities=14%  Similarity=0.155  Sum_probs=39.8

Q ss_pred             CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      +....+....++++|+.||.+|||+|..+.|.|.++.+++.     ++.|+++.+
T Consensus        12 ~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~-----~v~~~~~~~   61 (175)
T 3gyk_A           12 PNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADP-----NVRLVYREW   61 (175)
T ss_dssp             TTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TEEEEEEEC
T ss_pred             CCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCC-----CEEEEEEeC
Confidence            33445566678999999999999999999999999988864     266666654

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.63  E-value=1.9e-08  Score=77.25  Aligned_cols=68  Identities=21%  Similarity=0.372  Sum_probs=46.2

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      ++++++ ||++||++|+.+.|.|.++..        .+.++-|..+....                  +....+.+.|++
T Consensus        19 ~~~vv~-f~a~~C~~C~~~~~~l~~~~~--------~~~~v~v~~~~~~~------------------~~~~~l~~~~~v   71 (116)
T 2e7p_A           19 SAPVVV-FSKTYCGYCNRVKQLLTQVGA--------SYKVVELDELSDGS------------------QLQSALAHWTGR   71 (116)
T ss_dssp             SSSEEE-EECTTCHHHHHHHHHHHHHTC--------CCEEEEGGGSTTHH------------------HHHHHHHHHHSC
T ss_pred             CCCEEE-EECCCChhHHHHHHHHHHcCC--------CeEEEEccCCCChH------------------HHHHHHHHHhCC
Confidence            455666 999999999999998877632        23444443333211                  012568889999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++|++ ++  +|+++..
T Consensus        72 ~~~Pt~-~~--~g~~v~~   86 (116)
T 2e7p_A           72 GTVPNV-FI--GGKQIGG   86 (116)
T ss_dssp             CSSCEE-EE--TTEEEEC
T ss_pred             CCcCEE-EE--CCEEECC
Confidence            999999 44  6887754

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=98.62  E-value=6e-09  Score=79.66  Aligned_cols=63  Identities=16%  Similarity=0.184  Sum_probs=43.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +.+.+||+|||+||++|+++.|.+...++.... +..+.++.|+++.+..                  ..++.+|+|.+.
T Consensus        17 ~~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~-~~~~~l~~vdv~~~~~------------------~~la~~~~V~g~   77 (116)
T 3dml_A           17 KAELRLLMFEQPGCLYCARWDAEIAPQYPLTDE-GRAAPVQRLQMRDPLP------------------PGLELARPVTFT   77 (116)
T ss_dssp             --CEEEEEEECTTCHHHHHHHHHTTTTGGGSHH-HHHSCEEEEETTSCCC------------------TTCBCSSCCCSS
T ss_pred             cCCCEEEEEECCCCHHHHHHHHHHHhhHHHhhh-cccceEEEEECCCCCc------------------hhHHHHCCCCCC
Confidence            347899999999999999998866554332110 1125688898886532                  256778888888


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |+
T Consensus        78 PT   79 (116)
T 3dml_A           78 PT   79 (116)
T ss_dssp             SE
T ss_pred             CE
Confidence            86

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=98.62  E-value=4.5e-08  Score=73.88  Aligned_cols=60  Identities=7%  Similarity=0.101  Sum_probs=47.6

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccC-CC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGAD-AY  120 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~-~~  120 (358)
                      +++++|+|+|+|||+|+++.|.|+++++.  .   ++.++.+++|..++..                ..++.+|||+ ..
T Consensus        24 ~~~vvi~khatwCgpc~~~~~~~e~~~~~--~---~v~~~~vdVde~r~~S----------------n~IA~~~~V~h~s   82 (112)
T 3iv4_A           24 NKYVFVLKHSETCPISANAYDQFNKFLYE--R---DMDGYYLIVQQERDLS----------------DYIAKKTNVKHES   82 (112)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHH--H---TCCEEEEEGGGGHHHH----------------HHHHHHHTCCCCS
T ss_pred             CCCEEEEEECCcCHhHHHHHHHHHHHhcc--C---CceEEEEEeecCchhh----------------HHHHHHhCCccCC
Confidence            79999999999999999999999999874  2   2779999988665310                1367788888 47


Q ss_pred             Cc
Q 018266          121 PF  122 (358)
Q Consensus       121 P~  122 (358)
                      |.
T Consensus        83 Pq   84 (112)
T 3iv4_A           83 PQ   84 (112)
T ss_dssp             SE
T ss_pred             Ce
Confidence            74

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=98.61  E-value=6.6e-09  Score=83.08  Aligned_cols=59  Identities=10%  Similarity=0.207  Sum_probs=42.9

Q ss_pred             CCEEEEEEeCCC--ChhhhhhhHHHHHHHHHHhcCCCceE--EEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           42 GKTICLFFSANW--CRPCKTFTPQLVQLYDTLRTRGTELE--VIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        42 gk~vlv~F~a~w--C~~C~~~~p~~~~~~~~l~~~~~~~~--iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ++.++|+|+++|  |++|+.++|.|+++++++ ++   +.  ++.|++|...                    +++.+|+|
T Consensus        34 ~~~~vv~f~~~~~~C~~C~~l~P~l~~la~~~-~~---v~~~~~~Vd~d~~~--------------------~la~~~~V   89 (142)
T 2es7_A           34 VGDGVILLSSDPRRTPEVSDNPVMIAELLREF-PQ---FDWQVAVADLEQSE--------------------AIGDRFNV   89 (142)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTC-TT---SCCEEEEECHHHHH--------------------HHHHTTTC
T ss_pred             CCCEEEEEECCCCCCccHHHHHHHHHHHHHHh-cc---cceeEEEEECCCCH--------------------HHHHhcCC
Confidence            455888999887  999999999999999988 32   66  7777766433                    57889999


Q ss_pred             CCCCcch
Q 018266          118 DAYPFTR  124 (358)
Q Consensus       118 ~~~P~~~  124 (358)
                      .++|+..
T Consensus        90 ~~iPT~~   96 (142)
T 2es7_A           90 RRFPATL   96 (142)
T ss_dssp             CSSSEEE
T ss_pred             CcCCeEE
Confidence            9999743

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=98.56  E-value=4.3e-07  Score=76.43  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=38.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .++++++.||++|||+|+.+.|.+.++.+++.    +++.++.+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAP----QDVVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCC----CCeEEEEEecc
Confidence            57999999999999999999999999988876    46888888876

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.54  E-value=3.7e-07  Score=79.33  Aligned_cols=67  Identities=13%  Similarity=0.226  Sum_probs=55.1

Q ss_pred             CCcEEEEEEec--cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CHHHHHHhhhcCCccccccCchhHHHH
Q 018266          169 AGKTIGLYFGA--HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       169 ~~k~vlv~F~a--~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .+++|+|.||+  +||+    +.|.|.++++.+..  ..++.|+.|++|.   +.                     ...+
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~--~~~v~~akVDvd~~g~~~---------------------~~~l   73 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSAS--SDDLLVAEVGISDYGDKL---------------------NMEL   73 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTT--CTTEEEEEECCCCSSSCC---------------------SHHH
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcC--CCCeEEEEEeCCcccchh---------------------hHHH
Confidence            35899999999  9998    99999999999863  2467788887653   11                     3689


Q ss_pred             HHHcCCC--ceeeEEEECCCCc
Q 018266          244 CRIFNIK--GIPALVLIGPDGK  263 (358)
Q Consensus       244 ~~~~~v~--~~P~~~lid~~G~  263 (358)
                      +++|+|+  ++||+++| ++|+
T Consensus        74 ~~~~~V~~~~~PTl~~f-~~G~   94 (240)
T 2qc7_A           74 SEKYKLDKESYPVFYLF-RDGD   94 (240)
T ss_dssp             HHHTTCCGGGCSEEEEE-ETTC
T ss_pred             HHHcCCCCCCCCEEEEE-eCCC
Confidence            9999999  99999999 6666

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.53  E-value=8.8e-08  Score=71.58  Aligned_cols=63  Identities=16%  Similarity=0.239  Sum_probs=47.2

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      .+++++.|+++||++|+...+.|.++.        .++.+..|++|...                     ..++.++|+ 
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~--------~~i~~~~vdi~~~~---------------------~~el~~~~g-   64 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYK--------DRFILQEVDITLPE---------------------NSTWYERYK-   64 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTS--------SSSEEEEEETTSST---------------------THHHHHHSS-
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhh--------hCCeEEEEECCCcc---------------------hHHHHHHHC-
Confidence            457888899999999999998876542        33678888887321                     367889999 


Q ss_pred             CceeeEEEECCCCcEE
Q 018266          250 KGIPALVLIGPDGKTI  265 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~  265 (358)
                      .++|+++ +  +|+.+
T Consensus        65 ~~vP~l~-~--~g~~~   77 (100)
T 1wjk_A           65 FDIPVFH-L--NGQFL   77 (100)
T ss_dssp             SSCSEEE-E--SSSEE
T ss_pred             CCCCEEE-E--CCEEE
Confidence            9999764 4  56654

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=98.53  E-value=2.2e-07  Score=78.05  Aligned_cols=43  Identities=19%  Similarity=0.224  Sum_probs=37.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .++++|+.||..|||+|..+.|.|.++.+++.    .++.+..+.+.
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~   66 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLP----ADVHFVRLPAL   66 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCC----TTEEEEEEECC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCC----CCeEEEEEehh
Confidence            57999999999999999999999999988876    46777777764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.50  E-value=2e-07  Score=67.10  Aligned_cols=66  Identities=21%  Similarity=0.385  Sum_probs=49.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC--CCc
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN--IKG  251 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--v~~  251 (358)
                      ++.|+++|||+|+...+.|.++..+++     ++.+..++++.+..                   ...++.+.++  +.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~-----~i~~~~vdi~~~~~-------------------~~~~l~~~~~~~~~~   58 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIRAEGI-------------------TKEDLQQKAGKPVET   58 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHHHHTC-------------------CSHHHHHHTCCCSCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC-----CceEEEEecccChH-------------------HHHHHHHHhCCCCce
Confidence            567999999999999999999888764     46777776653210                   0146888898  999


Q ss_pred             eeeEEEECCCCcEEe
Q 018266          252 IPALVLIGPDGKTIS  266 (358)
Q Consensus       252 ~P~~~lid~~G~v~~  266 (358)
                      +|+++ +  +|+.+.
T Consensus        59 vP~i~-~--~g~~i~   70 (85)
T 1ego_A           59 VPQIF-V--DQQHIG   70 (85)
T ss_dssp             SCEEE-E--TTEEEE
T ss_pred             eCeEE-E--CCEEEE
Confidence            99984 4  577653

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=98.47  E-value=1.8e-07  Score=76.87  Aligned_cols=91  Identities=14%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             Cccc-ccCCCC--c-eeccc-CCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceE-EEEEEecCChhHHHHHH
Q 018266           24 GVEF-LLSRQG--K-VPLSS-CGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELE-VIFISFDHDENGFEEHF   96 (358)
Q Consensus        24 ~~~~-l~~~~g--~-v~l~~-~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~-iv~i~~d~~~~~~~~~~   96 (358)
                      .++| |. .+|  + ++|++ ++||.|+|+|| +.|||.|....+.|.+.+.++++.|  ++ |+.||+|.. .+..++.
T Consensus        20 aPdf~l~-~~g~~~~v~L~d~~~gk~vVL~fyP~~fTp~Ct~e~~~f~~~~~ef~~~g--v~~VigIS~D~~-~~~~~w~   95 (171)
T 2xhf_A           20 IPDVLVY-EDVPSKSFPIHDVFRGRKGILFSVVGAFVPGSNNHIPEYLSLYDKFKEEG--YHTIACIAVNDP-FVMAAWG   95 (171)
T ss_dssp             CCCCEEE-CSSTTCEEETHHHHTTSEEEEEECSCTTCTTTTSSHHHHHHTHHHHHHTT--CCEEEEEESSCH-HHHHHHH
T ss_pred             CCCeEEe-cCCCCcEEEhHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCC--CCEEEEEeCCCH-HHHHHHH
Confidence            3455 55 455  7 99999 49999999999 7899999999999999999999887  75 999999953 3333333


Q ss_pred             hh--C--CCcccccccceeeeccccC
Q 018266           97 KS--S--DGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        97 ~~--~--~~~~~~~~~~~l~~~~gi~  118 (358)
                      ..  .  ...++.+...++++.||+.
T Consensus        96 ~~~~~~~~f~lLSD~~~~~a~ayGv~  121 (171)
T 2xhf_A           96 KTVDPEHKIRMLADMHGEFTRALGTE  121 (171)
T ss_dssp             HHHCTTCCSEEEECTTSHHHHHHTCB
T ss_pred             HhcCCCCCeEEEEeCCchHHHHhCCc
Confidence            32  1  3356666666777777764

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=98.42  E-value=1e-06  Score=73.94  Aligned_cols=43  Identities=21%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .++++|+.||.+|||+|..+.|.|.++.++++    .++.+..+.+.
T Consensus        21 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~~   63 (195)
T 2znm_A           21 SGKIEVLEFFGYFCVHCHHFDPLLLKLGKALP----SDAYLRTEHVV   63 (195)
T ss_dssp             SSSEEEEEEECTTSCCTTSSCHHHHHHHHHSC----TTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHhHHHHHHHHHCC----CceEEEEeccc
Confidence            57899999999999999999999999988875    46777777764

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=98.42  E-value=1.3e-06  Score=76.06  Aligned_cols=96  Identities=11%  Similarity=0.081  Sum_probs=60.8

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC---CCH-------------HHHHHhhh
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD---RDH-------------KEFDLNHS  226 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d---~~~-------------~~~~~~~~  226 (358)
                      +.+..-.++.+++.|+.+|||+|+++.+.+.++.+.      .++.|+++.+.   ...             ..+.....
T Consensus        90 i~~G~~~ak~~v~~F~D~~Cp~C~~~~~~l~~~~~~------g~v~v~~~~~p~~~~~s~~~a~a~~~a~d~~~~~~~~~  163 (241)
T 1v58_A           90 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE  163 (241)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             ceECCCCCCeEEEEEECCCChhHHHHHHHHHHHHhC------CcEEEEEEECCcCCCcHHHHHHHHHHccCHHHHHHHHH
Confidence            444444678999999999999999999998776542      35777776652   111             11111111


Q ss_pred             -cCCc--cc--------cccCchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          227 -IMPW--LA--------IPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       227 -~~~~--~~--------~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                       .+..  +.        +....+....+.+.+||+++|++++.|.+|++
T Consensus       164 ~~~~~~~l~~~~~~~~~~~~~v~~~~~l~~~~gv~gtPt~vi~~~~G~~  212 (241)
T 1v58_A          164 ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTL  212 (241)
T ss_dssp             HTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEE
T ss_pred             HHhccCCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence             1100  00        00012234578889999999999999888875

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=98.41  E-value=1.8e-07  Score=77.82  Aligned_cols=81  Identities=15%  Similarity=0.257  Sum_probs=62.3

Q ss_pred             c-eeccc-CCCCEEEEEEe-CCCChhhh-hhhHHHHHHHHHH-hcCCCceE-EEEEEecCChhHHHHHHhhC---CCccc
Q 018266           34 K-VPLSS-CGGKTICLFFS-ANWCRPCK-TFTPQLVQLYDTL-RTRGTELE-VIFISFDHDENGFEEHFKSS---DGTLI  104 (358)
Q Consensus        34 ~-v~l~~-~~gk~vlv~F~-a~wC~~C~-~~~p~~~~~~~~l-~~~~~~~~-iv~i~~d~~~~~~~~~~~~~---~~~~~  104 (358)
                      + +++++ ++||.|+|+|| +.|||.|. ..++.|.+.+.++ ++.|  ++ |+.||.|. ..+..++....   ...++
T Consensus        33 ~~v~l~d~~~gk~vVL~fyP~~fTp~Ct~~e~~~f~~~~~~f~~~~g--~~~V~gvS~D~-~~~~~~~~~~~~~~~f~lL  109 (182)
T 1xiy_A           33 TSIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENN--FDDIYCITNND-IYVLKSWFKSMDIKKIKYI  109 (182)
T ss_dssp             EEEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSC--CSEEEEEESSC-HHHHHHHHHHTTCCSSEEE
T ss_pred             eeEeHHHHhCCCcEEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeCCC-HHHHHHHHHHcCCCCceEE
Confidence            7 99998 69999999999 78999999 8999999999999 8887  74 88899985 33334443331   23556


Q ss_pred             ccccceeeecccc
Q 018266          105 EEDLIGLIEDYGA  117 (358)
Q Consensus       105 ~~~~~~l~~~~gi  117 (358)
                      .+...++++.||+
T Consensus       110 sD~~~~~a~~yGv  122 (182)
T 1xiy_A          110 SDGNSSFTDSMNM  122 (182)
T ss_dssp             ECTTSHHHHHTTC
T ss_pred             EeCchHHHHHhCC
Confidence            6666667777776

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=98.41  E-value=2.3e-07  Score=74.82  Aligned_cols=67  Identities=12%  Similarity=0.197  Sum_probs=46.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      +..+..+||+|||+||++||..|+.|....   .++.+.++++   +.++.++.+..+.                  ..+
T Consensus        35 l~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~---fv~v~~d~~~~~~------------------~~l   93 (153)
T 2dlx_A           35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEG------------------QRY   93 (153)
T ss_dssp             HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHH------------------HHH
T ss_pred             HHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcC---eEEEEEecCCHhH------------------HHH
Confidence            444555799999999999999999997655   4556656554   5555555543222                  356


Q ss_pred             eeccccCCCCc
Q 018266          112 IEDYGADAYPF  122 (358)
Q Consensus       112 ~~~~gi~~~P~  122 (358)
                      +++|++.++|+
T Consensus        94 ~~~y~v~~~P~  104 (153)
T 2dlx_A           94 IQFYKLGDFPY  104 (153)
T ss_dssp             HHHHTCCSSSE
T ss_pred             HHHcCCCCCCE
Confidence            77888888885

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.40  E-value=5.1e-08  Score=86.81  Aligned_cols=71  Identities=18%  Similarity=0.476  Sum_probs=48.1

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .+.+.-++..+++|||+|||+|+.+.|.+++++++++          .+.+|....                 .+...++
T Consensus       191 ~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l~----------~Vd~d~~d~-----------------~~~~~~l  243 (291)
T 3kp9_A          191 GLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQVP----------YVECSPNGP-----------------GTPQAQE  243 (291)
T ss_dssp             HHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGSC----------EEESCSSCS-----------------SSCCCHH
T ss_pred             HHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHcC----------EEEEeecCc-----------------hhhHHHH
Confidence            3333334455789999999999999999988865442          344442100                 0013688


Q ss_pred             HHHcCCCceeeEEEECCCCcE
Q 018266          244 CRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       244 ~~~~~v~~~P~~~lid~~G~v  264 (358)
                      +++|+|+++||+++   +|+.
T Consensus       244 a~~~gI~~vPT~~i---~G~~  261 (291)
T 3kp9_A          244 CTEAGITSYPTWII---NGRT  261 (291)
T ss_dssp             HHTTTCCSTTEEEE---TTEE
T ss_pred             HHHcCCcccCeEEE---CCEE
Confidence            99999999999655   6763

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=98.37  E-value=2.5e-07  Score=72.87  Aligned_cols=59  Identities=12%  Similarity=0.177  Sum_probs=47.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC-
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA-  119 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~-  119 (358)
                      .+++|+|+|||+ |++|+++.|.|++++++++.+   +.++.++.|...                    .++..||+.+ 
T Consensus        22 ~~~pv~v~f~a~-~~~c~~~~p~l~~~A~~~~gk---~~f~~vd~d~~~--------------------~~a~~~gi~~~   77 (133)
T 2djk_A           22 AGIPLAYIFAET-AEERKELSDKLKPIAEAQRGV---INFGTIDAKAFG--------------------AHAGNLNLKTD   77 (133)
T ss_dssp             TTSCEEEEECSC-SSSHHHHHHHHHHHHHSSTTT---SEEEEECTTTTG--------------------GGTTTTTCCSS
T ss_pred             CCCCEEEEEecC-hhhHHHHHHHHHHHHHHhCCe---EEEEEEchHHhH--------------------HHHHHcCCCcc
Confidence            367899999999 899999999999999998765   677777766443                    4677788877 


Q ss_pred             -CCcc
Q 018266          120 -YPFT  123 (358)
Q Consensus       120 -~P~~  123 (358)
                       .|+.
T Consensus        78 ~iPtl   82 (133)
T 2djk_A           78 KFPAF   82 (133)
T ss_dssp             SSSEE
T ss_pred             cCCEE
Confidence             7753

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=98.35  E-value=2.5e-06  Score=72.80  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=54.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH----------------HHHHHhhhcCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH----------------KEFDLNHSIMP  229 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~----------------~~~~~~~~~~~  229 (358)
                      .++++++.||++|||+|+.+.|.|.++.+       .++.|+++...-   ..                ..|..++....
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~-------~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~  157 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND-------LGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNL  157 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh-------CCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCC
Confidence            57899999999999999999999887532       246676654431   11                11222221111


Q ss_pred             c--cccccCchhHHHHHHHcCCCceeeEEEECCCCc
Q 018266          230 W--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK  263 (358)
Q Consensus       230 ~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~  263 (358)
                      .  .......+....+++.+||+++|++++  .+|+
T Consensus       158 ~~~~~~~~~v~~~~~l~~~~gV~gTPt~vi--~nG~  191 (211)
T 1t3b_A          158 PKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGE  191 (211)
T ss_dssp             CSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSC
T ss_pred             CChHHHHHHHHHHHHHHHHcCCCcCCEEEE--eCCE
Confidence            0  001112234568889999999999987  4675

>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A

Probab=98.31  E-value=4.7e-07  Score=78.63  Aligned_cols=61  Identities=20%  Similarity=0.294  Sum_probs=48.2

Q ss_pred             CCCEEEEEEeC--CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC---ChhHHHHHHhhCCCcccccccceeeecc
Q 018266           41 GGKTICLFFSA--NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH---DENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        41 ~gk~vlv~F~a--~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .+++|+|+|||  |||+    +.|.|+++++.+... +++.++.|++|.   +..                  ..++.+|
T Consensus        21 ~~~~vlV~FyA~~pWCg----l~P~~e~lA~~~~~~-~~v~~akVDvd~~g~~~~------------------~~l~~~~   77 (240)
T 2qc7_A           21 KSKFVLVKFDTQYPYGE----KQDEFKRLAENSASS-DDLLVAEVGISDYGDKLN------------------MELSEKY   77 (240)
T ss_dssp             GCSEEEEEECCSSCCSH----HHHHHHHHHHHHTTC-TTEEEEEECCCCSSSCCS------------------HHHHHHT
T ss_pred             CCCCEEEEEeCCCCCCc----chHHHHHHHHHhcCC-CCeEEEEEeCCcccchhh------------------HHHHHHc
Confidence            36899999999  9999    999999999999752 247777777653   222                  3689999


Q ss_pred             ccC--CCCcch
Q 018266          116 GAD--AYPFTR  124 (358)
Q Consensus       116 gi~--~~P~~~  124 (358)
                      +|.  +||+..
T Consensus        78 ~V~~~~~PTl~   88 (240)
T 2qc7_A           78 KLDKESYPVFY   88 (240)
T ss_dssp             TCCGGGCSEEE
T ss_pred             CCCCCCCCEEE
Confidence            999  999754

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.29  E-value=1.1e-07  Score=84.57  Aligned_cols=66  Identities=15%  Similarity=0.298  Sum_probs=46.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      +.+++.-++..+++|||||||||+++.|.|+++++++       .  .+++|.+..              .+...+++++
T Consensus       190 ~~la~~l~~~~vV~F~A~WC~~Ck~l~p~le~lA~~l-------~--~Vd~d~~d~--------------~~~~~~la~~  246 (291)
T 3kp9_A          190 VGLAAHLRQIGGTMYGAYWCPHCQDQKELFGAAFDQV-------P--YVECSPNGP--------------GTPQAQECTE  246 (291)
T ss_dssp             HHHHHHHHHTTCEEEECTTCHHHHHHHHHHGGGGGGS-------C--EEESCSSCS--------------SSCCCHHHHT
T ss_pred             HHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHHHHHc-------C--EEEEeecCc--------------hhhHHHHHHH
Confidence            6666654555679999999999999999999987544       1  455552110              0001468999


Q ss_pred             cccCCCCcc
Q 018266          115 YGADAYPFT  123 (358)
Q Consensus       115 ~gi~~~P~~  123 (358)
                      |+|+++|+.
T Consensus       247 ~gI~~vPT~  255 (291)
T 3kp9_A          247 AGITSYPTW  255 (291)
T ss_dssp             TTCCSTTEE
T ss_pred             cCCcccCeE
Confidence            999999973

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=98.28  E-value=5.4e-07  Score=68.89  Aligned_cols=60  Identities=18%  Similarity=0.310  Sum_probs=38.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +++.|++ ||++||++|+.+.|.|.+++..       +  ..++++.+...-..             ...++..||+.++
T Consensus        18 ~~~~vv~-f~a~~C~~C~~~~~~l~~~~~~-------~--~~v~v~~~~~~~~~-------------~~~l~~~~~v~~~   74 (116)
T 2e7p_A           18 SSAPVVV-FSKTYCGYCNRVKQLLTQVGAS-------Y--KVVELDELSDGSQL-------------QSALAHWTGRGTV   74 (116)
T ss_dssp             TSSSEEE-EECTTCHHHHHHHHHHHHHTCC-------C--EEEEGGGSTTHHHH-------------HHHHHHHHSCCSS
T ss_pred             cCCCEEE-EECCCChhHHHHHHHHHHcCCC-------e--EEEEccCCCChHHH-------------HHHHHHHhCCCCc
Confidence            3566666 9999999999999988876321       3  44555543210000             0146778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (116)
T 2e7p_A           75 PNV   77 (116)
T ss_dssp             CEE
T ss_pred             CEE
Confidence            865

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=98.27  E-value=3.9e-07  Score=68.58  Aligned_cols=43  Identities=19%  Similarity=0.294  Sum_probs=36.3

Q ss_pred             EEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           44 TICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        44 ~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      .+++.||++||++|+++.|.|+++++++   +  +++..|++|.+.+.
T Consensus        30 ~~vv~y~~~~C~~C~~a~~~L~~l~~e~---~--i~~~~vDId~d~~l   72 (107)
T 2fgx_A           30 RKLVVYGREGCHLCEEMIASLRVLQKKS---W--FELEVINIDGNEHL   72 (107)
T ss_dssp             CCEEEEECSSCHHHHHHHHHHHHHHHHS---C--CCCEEEETTTCHHH
T ss_pred             cEEEEEeCCCChhHHHHHHHHHHHHHhc---C--CeEEEEECCCCHHH
Confidence            5689999999999999999999998875   2  66888888877653

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=98.25  E-value=2.5e-07  Score=67.04  Aligned_cols=44  Identities=14%  Similarity=0.096  Sum_probs=32.3

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (358)
                      ++.||++||++|+++.|.|++++.++        +..|++|.+.+...++..
T Consensus         3 vv~f~a~~C~~C~~~~~~L~~~~~~~--------~~~vdid~~~~l~~~~g~   46 (87)
T 1ttz_A            3 LTLYQRDDCHLCDQAVEALAQARAGA--------FFSVFIDDDAALESAYGL   46 (87)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHTTCCC--------EEEEECTTCHHHHHHHTT
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHhh--------eEEEECCCCHHHHHHhCC
Confidence            68899999999999999988754321        567888877654444433

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=98.22  E-value=1.3e-07  Score=67.40  Aligned_cols=56  Identities=18%  Similarity=0.249  Sum_probs=39.4

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      ++.||++||++|+++.|.++++.+++   +  +.+..+++|.+.+.                 .+++.+||+.+.|+.
T Consensus         4 ~~~f~~~~C~~C~~~~~~l~~~~~~~---~--~~~~~~~v~~~~~~-----------------~~~~~~~gv~~vPt~   59 (80)
T 2k8s_A            4 KAIFYHAGCPVCVSAEQAVANAIDPS---K--YTVEIVHLGTDKAR-----------------IAEAEKAGVKSVPAL   59 (80)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHSCTT---T--EEEEEEETTTCSST-----------------HHHHHHHTCCEEEEE
T ss_pred             eEEEeCCCCCchHHHHHHHHHHHHhc---C--CeEEEEEecCChhh-----------------HHHHHHcCCCcCCEE
Confidence            57799999999999999998875443   3  45666777653110                 245677888888853

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=98.18  E-value=1.9e-05  Score=64.97  Aligned_cols=51  Identities=18%  Similarity=0.244  Sum_probs=41.2

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      +.+....++++|+.|+..+||+|..+.+.+.++.++|.+  ..++.+++..+.
T Consensus        20 ~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~--~~~v~~~~~~~~   70 (175)
T 1z6m_A           20 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLFD   70 (175)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEECC
T ss_pred             cccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhh--CCcEEEEEEeCC
Confidence            455556789999999999999999999999999888832  156888887664

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=98.08  E-value=1e-06  Score=74.35  Aligned_cols=53  Identities=21%  Similarity=0.352  Sum_probs=40.6

Q ss_pred             CCc--eeccc-CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecC
Q 018266           32 QGK--VPLSS-CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        32 ~g~--v~l~~-~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      .|+  ..+.. ..+++++|+||++|||||+++.|.|   +++.+.+.++   +.++.+.++-
T Consensus       100 ~g~~y~~l~~p~~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~---v~~~~~~v~~  158 (197)
T 1un2_A          100 DGKQYTTLEKPVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEG---VKMTKYHVNF  158 (197)
T ss_dssp             BTTTEEECSSCCTTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTT---CCEEEEECSS
T ss_pred             CCCCceEccCCCCCCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCC---CEEEEeccCc
Confidence            455  44543 4578999999999999999999998   8888877543   6677776654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=98.06  E-value=3.6e-06  Score=72.02  Aligned_cols=46  Identities=17%  Similarity=0.379  Sum_probs=36.8

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+....+|++++.||++|||+|+++.|.+.++.+    .+  ++++++...
T Consensus        79 ~~~g~~~~k~~vv~F~d~~Cp~C~~~~~~l~~l~~----~~--v~v~~~~~p  124 (216)
T 1eej_A           79 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFP  124 (216)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECC
T ss_pred             eeecCCCCCEEEEEEECCCCHHHHHHHHHHHHHHh----CC--cEEEEEECC
Confidence            45555578999999999999999999999988764    23  778777654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=98.06  E-value=1.7e-05  Score=66.29  Aligned_cols=42  Identities=26%  Similarity=0.277  Sum_probs=36.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      .++++|+.||..+||+|..+.+.+.++.+++.    .++.+..+.+
T Consensus        24 ~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~----~~v~~~~~p~   65 (193)
T 2rem_A           24 AGKIEVVEIFGYTCPHCAHFDSKLQAWGARQA----KDVRFTLVPA   65 (193)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTEEEEEEEC
T ss_pred             CCCeEEEEEECCCChhHhhhhHHHHHHHHhcC----CceEEEEeCc
Confidence            57889999999999999999999999888775    4677777776

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=98.04  E-value=1.3e-06  Score=65.16  Aligned_cols=38  Identities=13%  Similarity=0.207  Sum_probs=31.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+++++.|+++||++|+++.|.|+++++     +  +.+..++++
T Consensus        15 ~~~~v~~f~~~~C~~C~~~~~~L~~l~~-----~--i~~~~vdi~   52 (100)
T 1wjk_A           15 ALPVLTLFTKAPCPLCDEAKEVLQPYKD-----R--FILQEVDIT   52 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSS-----S--SEEEEEETT
T ss_pred             CCCEEEEEeCCCCcchHHHHHHHHHhhh-----C--CeEEEEECC
Confidence            4678899999999999999998876432     2  678888887

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=98.04  E-value=1.7e-06  Score=61.99  Aligned_cols=38  Identities=11%  Similarity=0.248  Sum_probs=31.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      ++.|+++||++|+.+.|.|++++.++.  +  +.+..++++.
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~l~~~~~--~--i~~~~vdi~~   40 (85)
T 1ego_A            3 TVIFGRSGCPYCVRAKDLAEKLSNERD--D--FQYQYVDIRA   40 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS--S--CEEEEECHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHhcCC--C--ceEEEEeccc
Confidence            577999999999999999999887653  3  7788888764

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=98.03  E-value=1.9e-05  Score=66.21  Aligned_cols=43  Identities=23%  Similarity=0.278  Sum_probs=36.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .++++|+.||+.|||+|..+.|.+.++.+++.    +++.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~----~~v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFK----DDMYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCC----TTEEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCC----CCeEEEEecCC
Confidence            47899999999999999999999999988776    46777777775

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.98  E-value=1.8e-05  Score=55.96  Aligned_cols=58  Identities=12%  Similarity=0.284  Sum_probs=40.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++||++|+...+.|.++          ++.+..++++.+.+                    .....+++++.++|
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~----------~i~~~~vdi~~~~~--------------------~~~~~~~~g~~~vP   52 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR----------GFDFEMINVDRVPE--------------------AAEALRAQGFRQLP   52 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred             EEEEcCCCChhHHHHHHHHHHC----------CCCeEEEECCCCHH--------------------HHHHHHHhCCCccC
Confidence            5679999999999988887642          34566778876531                    12223358999999


Q ss_pred             eEEEECCCCcE
Q 018266          254 ALVLIGPDGKT  264 (358)
Q Consensus       254 ~~~lid~~G~v  264 (358)
                      +++ +  +|+.
T Consensus        53 ~~~-~--~g~~   60 (81)
T 1h75_A           53 VVI-A--GDLS   60 (81)
T ss_dssp             EEE-E--TTEE
T ss_pred             EEE-E--CCEE
Confidence            984 4  4554

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.94  E-value=6.1e-06  Score=80.22  Aligned_cols=61  Identities=11%  Similarity=0.029  Sum_probs=46.1

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI  104 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~  104 (358)
                      ..+++.++.||++||++|+++.|.+++++.++.    ++.+..++.+..++...++....-++++
T Consensus       115 ~~~~~~i~~f~a~~C~~C~~~~~~l~~~a~~~~----~v~~~~vd~~~~~~~~~~~~i~svPt~~  175 (521)
T 1hyu_A          115 IDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQNEITERNVMGVPAVF  175 (521)
T ss_dssp             CCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCHHHHHHTTCCSSSEEE
T ss_pred             cCCCcceEEEECCCCcCcHHHHHHHHHHHhHcC----ceEEEEEechhhHHHHHHhCCCccCEEE
Confidence            457889999999999999999999999988753    3788888888766544444444444443

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=97.91  E-value=6.8e-05  Score=59.85  Aligned_cols=90  Identities=21%  Similarity=0.275  Sum_probs=56.1

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC-----CCH--------------HHHHHh
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD-----RDH--------------KEFDLN  224 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d-----~~~--------------~~~~~~  224 (358)
                      .+..-.++.+|+.|+.++||+|+++.+.+.++         .++.|+++.+.     .+.              ..|..+
T Consensus         8 ~~~~~~a~~~vv~f~D~~Cp~C~~~~~~l~~l---------~~v~v~~~~~P~~~~~~~s~~~a~a~~ca~d~~~a~~~~   78 (147)
T 3gv1_A            8 KEVRGNGKLKVAVFSDPDCPFCKRLEHEFEKM---------TDVTVYSFMMPIAGLHPDAARKAQILWCQPDRAKAWTDW   78 (147)
T ss_dssp             EEEETTCCEEEEEEECTTCHHHHHHHHHHTTC---------CSEEEEEEECCCTTTCTTHHHHHHHHHTSSSHHHHHHHH
T ss_pred             eeecCCCCEEEEEEECCCChhHHHHHHHHhhc---------CceEEEEEEccccccChhHHHHHHHHHcCCCHHHHHHHH
Confidence            33344578999999999999999999887543         34666665432     211              122222


Q ss_pred             hhc--CCc--cccccCchhHHHHHHHcCCCceeeEEEECCCCcE
Q 018266          225 HSI--MPW--LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKT  264 (358)
Q Consensus       225 ~~~--~~~--~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v  264 (358)
                      +..  .+-  ....-..+.+..+++++||+++||+++  .+|++
T Consensus        79 ~~~g~~~~~~~~~~~~v~~~~~la~~~gI~gtPt~vi--~nG~~  120 (147)
T 3gv1_A           79 MRKGKFPVGGSICDNPVAETTSLGEQFGFNGTPTLVF--PNGRT  120 (147)
T ss_dssp             HHHCCCCTTCCCCSCSHHHHHHHHHHTTCCSSCEEEC--TTSCE
T ss_pred             HhCCCCCCccHHHHHHHHHHHHHHHHhCCCccCEEEE--ECCEE
Confidence            211  110  011112345678999999999999998  57764

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=97.87  E-value=1.1e-05  Score=60.43  Aligned_cols=67  Identities=16%  Similarity=0.246  Sum_probs=43.0

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++|||+|+...+.|.++..++     .+  +..+.++.+.+.                ......+.+.+++.++|
T Consensus        14 v~~f~~~~C~~C~~~~~~L~~~~~~~-----~~--~~~vdi~~~~~~----------------~~~~~~l~~~~g~~~vP   70 (105)
T 1kte_A           14 VVVFIKPTCPFCRKTQELLSQLPFKE-----GL--LEFVDITATSDT----------------NEIQDYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-----TS--EEEEEGGGSTTH----------------HHHHHHHHHHHSCCCSC
T ss_pred             EEEEEcCCCHhHHHHHHHHHHcCCCC-----Cc--cEEEEccCCCCH----------------HHHHHHHHHHhCCCCcC
Confidence            56699999999999998887643222     11  445566543100                00124677889999999


Q ss_pred             eEEEECCCCcEEe
Q 018266          254 ALVLIGPDGKTIS  266 (358)
Q Consensus       254 ~~~lid~~G~v~~  266 (358)
                      +++ +  +|+.+.
T Consensus        71 ~i~-~--~g~~i~   80 (105)
T 1kte_A           71 RVF-I--GKECIG   80 (105)
T ss_dssp             EEE-E--TTEEEE
T ss_pred             eEE-E--CCEEEe
Confidence            974 4  677654

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=97.81  E-value=1.2e-05  Score=61.20  Aligned_cols=65  Identities=22%  Similarity=0.289  Sum_probs=43.3

Q ss_pred             EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceE---EEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFE---VVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       173 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~---vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      .++.|+++|||+|+...+.|.++          ++.   +..+.+|.+.+                .......+.+.+|+
T Consensus        20 ~vv~f~~~~Cp~C~~~~~~L~~~----------~~~~~~~~~vdi~~~~~----------------~~~~~~~l~~~~g~   73 (114)
T 2hze_A           20 KVTIFVKYTCPFCRNALDILNKF----------SFKRGAYEIVDIKEFKP----------------ENELRDYFEQITGG   73 (114)
T ss_dssp             CEEEEECTTCHHHHHHHHHHTTS----------CBCTTSEEEEEGGGSSS----------------HHHHHHHHHHHHSC
T ss_pred             CEEEEEeCCChhHHHHHHHHHHc----------CCCcCceEEEEccCCCC----------------hHHHHHHHHHHhCC
Confidence            46679999999999988877543          223   55566654320                00112578888999


Q ss_pred             CceeeEEEECCCCcEEe
Q 018266          250 KGIPALVLIGPDGKTIS  266 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~  266 (358)
                      .++|++++   +|+.+.
T Consensus        74 ~~vP~v~i---~g~~ig   87 (114)
T 2hze_A           74 KTVPRIFF---GKTSIG   87 (114)
T ss_dssp             CSSCEEEE---TTEEEE
T ss_pred             CCcCEEEE---CCEEEe
Confidence            99998754   577664

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=97.78  E-value=3.6e-05  Score=64.43  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=36.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+|++++.||.+|||+|+.+.|.+.++.+++.+.   +.+..+.++
T Consensus        24 ~~~~~vv~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~~~~   66 (195)
T 3hd5_A           24 PGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQD---VVLKQVPIA   66 (195)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEECC
T ss_pred             CCCeEEEEEECCCCccHHHhhHHHHHHHHHCCCC---eEEEEEecc
Confidence            4899999999999999999999999998877552   667666655

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.77  E-value=4.4e-05  Score=62.62  Aligned_cols=55  Identities=15%  Similarity=0.269  Sum_probs=42.3

Q ss_pred             ccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      |.+..+.+.+-...+|++++.|+.+|||||+.+.|.+.++.+++.+    +.+++..+.
T Consensus         8 l~~~~~~~~~G~~~a~v~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~----v~~~~~~~p   62 (175)
T 3gyk_A            8 LFNDPNAPVLGNPEGDVTVVEFFDYNCPYCRRAMAEVQGLVDADPN----VRLVYREWP   62 (175)
T ss_dssp             HHCCTTSCEEECTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----EEEEEEECC
T ss_pred             HhcCCCCCCcCCCCCCEEEEEEECCCCccHHHHHHHHHHHHHhCCC----EEEEEEeCC
Confidence            3343333777777899999999999999999999999998876432    667766654

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.73  E-value=2.2e-05  Score=66.87  Aligned_cols=40  Identities=25%  Similarity=0.485  Sum_probs=32.4

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+|++++.|+.+|||||+++.|.+.++.+    .+  +++.++...
T Consensus        85 ~~k~~vv~F~d~~Cp~C~~~~~~l~~~~~----~~--v~v~~~~~p  124 (211)
T 1t3b_A           85 NEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAFP  124 (211)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECC
T ss_pred             CCCEEEEEEECCCCHhHHHHHHHHHHHHh----CC--cEEEEEECC
Confidence            57899999999999999999999988543    23  677766554

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.71  E-value=7.2e-05  Score=51.80  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=40.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++||++|+...+.|.++          ++.+..+.++.+.+                    .....+.+++.++|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----------~i~~~~~di~~~~~--------------------~~~~~~~~~~~~vP   52 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA----------GLAYNTVDISLDDE--------------------ARDYVMALGYVQAP   52 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred             EEEEeCCCChHHHHHHHHHHHc----------CCCcEEEECCCCHH--------------------HHHHHHHcCCCccC
Confidence            4679999999999988887643          24566677776531                    11222468999999


Q ss_pred             eEEEECCCCcE
Q 018266          254 ALVLIGPDGKT  264 (358)
Q Consensus       254 ~~~lid~~G~v  264 (358)
                      ++++   +|+.
T Consensus        53 ~l~~---~g~~   60 (75)
T 1r7h_A           53 VVEV---DGEH   60 (75)
T ss_dssp             EEEE---TTEE
T ss_pred             EEEE---CCeE
Confidence            9873   5654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=97.70  E-value=0.00034  Score=50.90  Aligned_cols=61  Identities=15%  Similarity=0.334  Sum_probs=41.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH-cCCCce
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI-FNIKGI  252 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~v~~~  252 (358)
                      ++.|+.+|||+|.+....|.+          .++.+..+.++.+.+.                   ...+.+. -|.+.+
T Consensus         6 I~vYs~~~Cp~C~~aK~~L~~----------~gi~y~~idi~~d~~~-------------------~~~~~~~~~G~~tV   56 (92)
T 2lqo_A            6 LTIYTTSWCGYCLRLKTALTA----------NRIAYDEVDIEHNRAA-------------------AEFVGSVNGGNRTV   56 (92)
T ss_dssp             EEEEECTTCSSHHHHHHHHHH----------TTCCCEEEETTTCHHH-------------------HHHHHHHSSSSSCS
T ss_pred             EEEEcCCCCHhHHHHHHHHHh----------cCCceEEEEcCCCHHH-------------------HHHHHHHcCCCCEe
Confidence            456889999999987776644          3455667788776532                   2233333 378899


Q ss_pred             eeEEEECCCCcEE
Q 018266          253 PALVLIGPDGKTI  265 (358)
Q Consensus       253 P~~~lid~~G~v~  265 (358)
                      |++++  .||+++
T Consensus        57 P~I~i--~Dg~~l   67 (92)
T 2lqo_A           57 PTVKF--ADGSTL   67 (92)
T ss_dssp             CEEEE--TTSCEE
T ss_pred             CEEEE--eCCEEE
Confidence            98765  577765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=6.9e-05  Score=58.47  Aligned_cols=62  Identities=15%  Similarity=0.310  Sum_probs=41.3

Q ss_pred             EEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeE
Q 018266          176 YFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPAL  255 (358)
Q Consensus       176 ~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~  255 (358)
                      .|+++||++|+...+.|.++    .      +.+..+.+|.+.+.                ......+.+.+++.++|++
T Consensus        31 vf~~~~Cp~C~~~~~~L~~~----~------i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~~vP~l   84 (130)
T 2cq9_A           31 IFSKTSCSYCTMAKKLFHDM----N------VNYKVVELDLLEYG----------------NQFQDALYKMTGERTVPRI   84 (130)
T ss_dssp             EEECSSCSHHHHHHHHHHHH----T------CCCEEEETTTSTTH----------------HHHHHHHHHHHSSCCSSEE
T ss_pred             EEEcCCChHHHHHHHHHHHc----C------CCcEEEECcCCcCc----------------HHHHHHHHHHhCCCCcCEE
Confidence            39999999999999888764    1      23445666643100                0012457888999999998


Q ss_pred             EEECCCCcEEe
Q 018266          256 VLIGPDGKTIS  266 (358)
Q Consensus       256 ~lid~~G~v~~  266 (358)
                      + +  +|+.+.
T Consensus        85 ~-i--~G~~ig   92 (130)
T 2cq9_A           85 F-V--NGTFIG   92 (130)
T ss_dssp             E-E--TTEEEE
T ss_pred             E-E--CCEEEc
Confidence            5 4  677664

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=97.61  E-value=4e-05  Score=54.19  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++||++|+++.+.|++.       +  +++..++++.+.+
T Consensus         3 v~~f~~~~C~~C~~~~~~l~~~-------~--i~~~~vdi~~~~~   38 (81)
T 1h75_A            3 ITIYTRNDCVQCHATKRAMENR-------G--FDFEMINVDRVPE   38 (81)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH
T ss_pred             EEEEcCCCChhHHHHHHHHHHC-------C--CCeEEEECCCCHH
Confidence            5679999999999999988752       3  5577788886643

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=97.57  E-value=0.00052  Score=56.42  Aligned_cols=42  Identities=14%  Similarity=0.326  Sum_probs=33.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      .++++|+.|+.-.||+|..+.+.+.++.+++.    .++.++.+.+
T Consensus        20 ~~~~~vvEf~dy~Cp~C~~~~~~~~~l~~~~~----~~~~~~~~~~   61 (184)
T 4dvc_A           20 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP----EGAKFQKNHV   61 (184)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCHhHHHHhHHHHHHHhhcC----CceEEEEEec
Confidence            35788999999999999999999999988886    4455655544

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=97.53  E-value=8.4e-05  Score=53.62  Aligned_cols=58  Identities=12%  Similarity=0.254  Sum_probs=40.9

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc-CCCce
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF-NIKGI  252 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~v~~~  252 (358)
                      ++.|+++||++|+...+.|.+.    .      +.+..+.++  .+                   ....+.+.+ ++.++
T Consensus         8 v~~y~~~~C~~C~~~~~~L~~~----~------i~~~~vdv~--~~-------------------~~~~l~~~~~~~~~v   56 (89)
T 2klx_A            8 IILYTRPNCPYCKRARDLLDKK----G------VKYTDIDAS--TS-------------------LRQEMVQRANGRNTF   56 (89)
T ss_dssp             EEEESCSCCTTTHHHHHHHHHH----T------CCEEEECSC--HH-------------------HHHHHHHHHHSSCCS
T ss_pred             EEEEECCCChhHHHHHHHHHHc----C------CCcEEEECC--HH-------------------HHHHHHHHhCCCCCc
Confidence            5679999999999988877653    1      235556666  11                   135677888 99999


Q ss_pred             eeEEEECCCCcEE
Q 018266          253 PALVLIGPDGKTI  265 (358)
Q Consensus       253 P~~~lid~~G~v~  265 (358)
                      |++++   +|+.+
T Consensus        57 P~l~~---~g~~i   66 (89)
T 2klx_A           57 PQIFI---GDYHV   66 (89)
T ss_dssp             CEEEE---TTEEC
T ss_pred             CEEEE---CCEEE
Confidence            99853   66654

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=97.51  E-value=7.8e-05  Score=59.41  Aligned_cols=63  Identities=14%  Similarity=0.289  Sum_probs=41.0

Q ss_pred             EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceee
Q 018266          175 LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA  254 (358)
Q Consensus       175 v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~  254 (358)
                      +.|+++|||+|+...+.|.++    .    ..  +..+.+|.+.+.                ......+.+.+++.++|+
T Consensus        52 vvf~~~~Cp~C~~~k~~L~~~----~----i~--~~~vdId~~~~~----------------~~~~~~L~~~~g~~tvP~  105 (146)
T 2ht9_A           52 VIFSKTSCSYCTMAKKLFHDM----N----VN--YKVVELDLLEYG----------------NQFQDALYKMTGERTVPR  105 (146)
T ss_dssp             EEEECTTCHHHHHHHHHHHHH----T----CC--CEEEEGGGCTTH----------------HHHHHHHHHHHSCCCSCE
T ss_pred             EEEECCCChhHHHHHHHHHHc----C----CC--eEEEECccCcCC----------------HHHHHHHHHHhCCCCcCe
Confidence            349999999999999888764    2    22  334555533100                001246788899999999


Q ss_pred             EEEECCCCcEEe
Q 018266          255 LVLIGPDGKTIS  266 (358)
Q Consensus       255 ~~lid~~G~v~~  266 (358)
                      ++ +  +|+.+.
T Consensus       106 if-i--~G~~ig  114 (146)
T 2ht9_A          106 IF-V--NGTFIG  114 (146)
T ss_dssp             EE-E--TTEEEE
T ss_pred             EE-E--CCEEEe
Confidence            85 4  677653

>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A

Probab=97.51  E-value=8.6e-05  Score=62.16  Aligned_cols=43  Identities=19%  Similarity=0.322  Sum_probs=34.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .++++++.|+.+|||||+.+.|.+.++.+++.++   +.+..+.++
T Consensus        23 ~~~v~vv~f~d~~Cp~C~~~~~~l~~~~~~~~~~---v~~~~~p~~   65 (193)
T 3hz8_A           23 AGKVEVLEFFGYFCPHCAHLEPVLSKHAKSFKDD---MYLRTEHVV   65 (193)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHTTCCTT---EEEEEEECC
T ss_pred             CCCcEEEEEECCCChhHHHHHHHHHHHHHHCCCC---eEEEEecCC
Confidence            4799999999999999999999999888776552   545444443

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=97.49  E-value=0.00017  Score=50.81  Aligned_cols=60  Identities=17%  Similarity=0.299  Sum_probs=41.1

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++||++|+...+.|.+.    .      +.+..+.++.+.+                   ....+.+.+++.++|
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~----~------i~~~~~~i~~~~~-------------------~~~~~~~~~~~~~vP   53 (82)
T 1fov_A            3 VEIYTKETCPYCHRAKALLSSK----G------VSFQELPIDGNAA-------------------KREEMIKRSGRTTVP   53 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----T------CCCEEEECTTCSH-------------------HHHHHHHHHSSCCSC
T ss_pred             EEEEECCCChhHHHHHHHHHHC----C------CCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            4568999999999988877653    1      3344566664321                   134677788999999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      +++ +  +|+.+
T Consensus        54 ~l~-~--~g~~i   62 (82)
T 1fov_A           54 QIF-I--DAQHI   62 (82)
T ss_dssp             EEE-E--TTEEE
T ss_pred             EEE-E--CCEEE
Confidence            985 3  66665

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=97.48  E-value=0.00039  Score=56.86  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=45.4

Q ss_pred             ccCCCCceecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           28 LLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        28 l~~~~g~v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+..+.+.+-...++++++.|+.+|||+|+.+.|.+.++.+++.+.+ ++++++..+.
T Consensus        13 ~~~~~~~~~~G~~~a~v~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~~-~v~~~~~~~~   70 (175)
T 1z6m_A           13 KVNTETGLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD   70 (175)
T ss_dssp             GCCSSSSEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred             ccCCCCCcccCCCCCCeEEEEEECCCCcchHHHHHHHHHHHHHHhhCC-cEEEEEEeCC
Confidence            444445577777788999999999999999999999999888884332 3778877665

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=97.47  E-value=0.00012  Score=56.13  Aligned_cols=67  Identities=16%  Similarity=0.324  Sum_probs=42.9

Q ss_pred             EEEEeccCCcccHhh-HHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCce
Q 018266          174 GLYFGAHWCPPCRSF-TSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  252 (358)
Q Consensus       174 lv~F~a~wC~~C~~~-~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~  252 (358)
                      ++.|+++|||+|+.. .+.|.++.    .   ..+.+..+.+|.+.+.                ......+.+.+|+.++
T Consensus        27 Vvvf~~~~Cp~C~~alk~~L~~~~----~---~~i~~~~vdid~~~~~----------------~~~~~~l~~~~g~~tv   83 (118)
T 3c1r_A           27 IFVASKTYCPYCHAALNTLFEKLK----V---PRSKVLVLQLNDMKEG----------------ADIQAALYEINGQRTV   83 (118)
T ss_dssp             EEEEECSSCHHHHHHHHHHHTTSC----C---CGGGEEEEEGGGSTTH----------------HHHHHHHHHHHSCCSS
T ss_pred             EEEEEcCCCcCHHHHHHHHHHHcC----C---CCCCeEEEECccCCCh----------------HHHHHHHHHHhCCCCc
Confidence            456999999999988 66654321    1   2255667777654210                0113568888999999


Q ss_pred             eeEEEECCCCcEEe
Q 018266          253 PALVLIGPDGKTIS  266 (358)
Q Consensus       253 P~~~lid~~G~v~~  266 (358)
                      |+++ +  +|+.+.
T Consensus        84 P~vf-i--~g~~ig   94 (118)
T 3c1r_A           84 PNIY-I--NGKHIG   94 (118)
T ss_dssp             CEEE-E--TTEEEE
T ss_pred             CEEE-E--CCEEEE
Confidence            9874 4  666653

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=97.41  E-value=0.00037  Score=50.44  Aligned_cols=61  Identities=13%  Similarity=0.221  Sum_probs=41.5

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++||++|+...+.|.+.          ++.+..+.++.+.+                   ....+.+.+++.++|
T Consensus         8 v~ly~~~~C~~C~~~~~~L~~~----------~i~~~~~di~~~~~-------------------~~~~l~~~~~~~~vP   58 (92)
T 2khp_A            8 VIIYTRPGCPYCARAKALLARK----------GAEFNEIDASATPE-------------------LRAEMQERSGRNTFP   58 (92)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----------TCCCEEEESTTSHH-------------------HHHHHHHHHTSSCCC
T ss_pred             EEEEECCCChhHHHHHHHHHHc----------CCCcEEEECCCCHH-------------------HHHHHHHHhCCCCcC
Confidence            5678999999999988877542          24455677775431                   124567788999999


Q ss_pred             eEEEECCCCcEEe
Q 018266          254 ALVLIGPDGKTIS  266 (358)
Q Consensus       254 ~~~lid~~G~v~~  266 (358)
                      ++ ++  +|+.+.
T Consensus        59 ~l-~~--~g~~i~   68 (92)
T 2khp_A           59 QI-FI--GSVHVG   68 (92)
T ss_dssp             EE-EE--TTEEEE
T ss_pred             EE-EE--CCEEEc
Confidence            75 34  566553

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=97.39  E-value=0.00019  Score=59.84  Aligned_cols=42  Identities=19%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~   85 (358)
                      .++++++.|+.+|||||+.+.|.+.++.+++...   +.+..+.+
T Consensus        24 ~~~~~i~~f~d~~Cp~C~~~~~~l~~l~~~~~~~---v~~~~~p~   65 (192)
T 3h93_A           24 PGKIEVVELFWYGCPHCYAFEPTIVPWSEKLPAD---VHFVRLPA   65 (192)
T ss_dssp             TTSEEEEEEECTTCHHHHHHHHHHHHHHHTCCTT---EEEEEEEC
T ss_pred             CCCCEEEEEECCCChhHHHhhHHHHHHHHhCCCC---eEEEEEeh
Confidence            5899999999999999999999999888876542   55554443

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=97.33  E-value=0.00042  Score=51.16  Aligned_cols=62  Identities=19%  Similarity=0.264  Sum_probs=41.9

Q ss_pred             EEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc-CCC
Q 018266          172 TIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF-NIK  250 (358)
Q Consensus       172 ~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~v~  250 (358)
                      .-++.|+++|||+|+.....|.++    .      +.+..+.++.+.+.                   ...+.+.. +..
T Consensus        16 ~~v~vy~~~~Cp~C~~ak~~L~~~----~------i~y~~idI~~~~~~-------------------~~~l~~~~~g~~   66 (99)
T 3qmx_A           16 AKIEIYTWSTCPFCMRALALLKRK----G------VEFQEYCIDGDNEA-------------------REAMAARANGKR   66 (99)
T ss_dssp             CCEEEEECTTCHHHHHHHHHHHHH----T------CCCEEEECTTCHHH-------------------HHHHHHHTTTCC
T ss_pred             CCEEEEEcCCChhHHHHHHHHHHC----C------CCCEEEEcCCCHHH-------------------HHHHHHHhCCCC
Confidence            345569999999999998888654    1      33455667765311                   24455666 899


Q ss_pred             ceeeEEEECCCCcEE
Q 018266          251 GIPALVLIGPDGKTI  265 (358)
Q Consensus       251 ~~P~~~lid~~G~v~  265 (358)
                      .+|+++ +  +|+.+
T Consensus        67 ~vP~if-i--~g~~i   78 (99)
T 3qmx_A           67 SLPQIF-I--DDQHI   78 (99)
T ss_dssp             CSCEEE-E--TTEEE
T ss_pred             CCCEEE-E--CCEEE
Confidence            999874 4  56665

>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0

Probab=97.32  E-value=8.3e-05  Score=62.03  Aligned_cols=44  Identities=14%  Similarity=0.309  Sum_probs=34.1

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEec
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ..+++++|+|+..|||||+.+.|.+   .++.+.+.+   ++.++.+.++
T Consensus        12 ~~~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~   58 (189)
T 3l9v_A           12 VVDAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQ---GSRMVKYHVS   58 (189)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCT---TCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChhHHHHhHhccchHHHHHhCCC---CCEEEEEech
Confidence            3468999999999999999999986   466655543   3777777765

>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13

Probab=97.32  E-value=3.8e-05  Score=64.59  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=37.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDR  216 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~  216 (358)
                      .++++||.||+.|||+|+.+.|.|   .++.++++    .++.+..+.++.
T Consensus       112 ~~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~----~~v~~~~~~v~~  158 (197)
T 1un2_A          112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVNF  158 (197)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECSS
T ss_pred             CCCCEEEEEECCCChhHHHhCcccccHHHHHHHCC----CCCEEEEeccCc
Confidence            468999999999999999999998   88888775    567788888765

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=97.31  E-value=0.00013  Score=50.38  Aligned_cols=36  Identities=17%  Similarity=0.347  Sum_probs=27.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|+++||++|++..+.++++       +  +++..++++.+..
T Consensus         3 i~~y~~~~C~~C~~~~~~l~~~-------~--i~~~~~di~~~~~   38 (75)
T 1r7h_A            3 ITLYTKPACVQCTATKKALDRA-------G--LAYNTVDISLDDE   38 (75)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT-------T--CCCEEEETTTCHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHc-------C--CCcEEEECCCCHH
Confidence            5679999999999999888753       3  5567778876543

>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.0014  Score=53.93  Aligned_cols=132  Identities=11%  Similarity=0.083  Sum_probs=69.7

Q ss_pred             hhccCCceecCCCceeeec----ccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          148 AIEGRDYVLSRDHRKITVS----ELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       148 ~~~~p~f~l~~~g~~~~l~----~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      |...|.|....=.+-+..+    .-.+|.++|++.++||+.|..+...+   .++.+-++    .++.+.+.+++.+.  
T Consensus        29 g~~~p~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~----~nfV~w~~dv~~~e~~  104 (178)
T 2ec4_A           29 GDCHPVFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLS----QNFITWAWDLTKDSNR  104 (178)
T ss_dssp             CSCCCCCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHH----HTEEEEEEECCSHHHH
T ss_pred             CCCCCCeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHH----cCEEEEEEeCCCchhh
Confidence            5567777531111122333    44679999999999999988776432   22333333    34444455555332  


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCC---cEEecCcchhhhhcCCCCCCCchhhHHHHHHHH
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDG---KTISTNGKEMISLYGAKAFPFTESRIAEIETAL  295 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G---~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l  295 (358)
                      +.+..++...-      . .......+.|++.++|++++|++.|   +++.+       +.|...   .++.+..|...+
T Consensus       105 ~~~~~~~~~~~------g-~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~-------~~G~~~---~~~ll~~L~~~~  167 (178)
T 2ec4_A          105 ARFLTMCNRHF------G-SVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNV-------IQGNTT---VDELMMRLMAAM  167 (178)
T ss_dssp             HHHHHHHHHHT------C-HHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEE-------ECSCCC---HHHHHHHHHHHH
T ss_pred             hhhhhhhhhhh------H-HHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEE-------EeCCCC---HHHHHHHHHHHH
Confidence            11222221100      0 0011223558999999999998764   44544       456432   334455555555


Q ss_pred             HHhcC
Q 018266          296 KKEGD  300 (358)
Q Consensus       296 ~~~~~  300 (358)
                      +....
T Consensus       168 e~~~~  172 (178)
T 2ec4_A          168 EIFTA  172 (178)
T ss_dssp             HHHHH
T ss_pred             HHhhH
Confidence            54443

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=97.26  E-value=0.00038  Score=51.92  Aligned_cols=62  Identities=21%  Similarity=0.225  Sum_probs=41.6

Q ss_pred             EEEEEEec-----cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          172 TIGLYFGA-----HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       172 ~vlv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      .|+| |+.     +|||+|+...+.|.++    .      +.+..+.++.+.+                   ....+.+.
T Consensus        18 ~vvv-f~~g~~~~~~C~~C~~~~~~L~~~----~------i~~~~vdi~~~~~-------------------~~~~l~~~   67 (105)
T 2yan_A           18 SVML-FMKGNKQEAKCGFSKQILEILNST----G------VEYETFDILEDEE-------------------VRQGLKAY   67 (105)
T ss_dssp             SEEE-EESBCSSSBCTTHHHHHHHHHHHH----T------CCCEEEEGGGCHH-------------------HHHHHHHH
T ss_pred             CEEE-EEecCCCCCCCccHHHHHHHHHHC----C------CCeEEEECCCCHH-------------------HHHHHHHH
Confidence            3555 555     9999999988887654    1      3455667665431                   12456677


Q ss_pred             cCCCceeeEEEECCCCcEEe
Q 018266          247 FNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~  266 (358)
                      +|..++|+++ +  +|+.+.
T Consensus        68 ~g~~~vP~v~-i--~g~~ig   84 (105)
T 2yan_A           68 SNWPTYPQLY-V--KGELVG   84 (105)
T ss_dssp             HTCCSSCEEE-E--TTEEEE
T ss_pred             HCCCCCCeEE-E--CCEEEe
Confidence            8999999985 4  677653

>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}

Probab=97.22  E-value=0.00074  Score=58.88  Aligned_cols=173  Identities=13%  Similarity=0.121  Sum_probs=87.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccc--cCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG--ADA  119 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--i~~  119 (358)
                      .++++|-|+.+|   |....+.|.++++.+++.   +.+..++   +.....++.... +.++.-....+.++|.  ...
T Consensus        24 ~~v~vvgff~~~---~~~~~~~f~~~A~~lr~~---~~F~~~~---~~~v~~~~~~~~-p~i~~fk~~~~~~kf~e~~~~   93 (252)
T 2h8l_A           24 KDASIVGFFDDS---FSEAHSEFLKAASNLRDN---YRFAHTN---VESLVNEYDDNG-EGIILFRPSHLTNKFEDKTVA   93 (252)
T ss_dssp             SSCEEEEEESCT---TSHHHHHHHHHHHHTTTT---SCEEEEC---CHHHHHHHCSSS-EEEEEECCGGGCCTTSCSEEE
T ss_pred             CCeEEEEEECCC---CChHHHHHHHHHHhcccC---cEEEEEC---hHHHHHHhCCCC-CcEEEEcchhhcccccccccc
Confidence            467889999988   456678899999999765   4454442   232222221111 1111000000001110  001


Q ss_pred             CCcchHhHHHHHhhhhhhhccchhhHhhhhccCCceecCCCceeeecccCCcEEEEEEeccCCcccH----hhHHHHHHH
Q 018266          120 YPFTRKRREELKAIDDSKRQGGKLEQLLAIEGRDYVLSRDHRKITVSELAGKTIGLYFGAHWCPPCR----SFTSQLIEV  195 (358)
Q Consensus       120 ~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~f~l~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~----~~~~~l~~l  195 (358)
                      ||             .+......+..++....-+.....+.+..  ..+.+++++|.|+...+....    .....+.++
T Consensus        94 y~-------------~g~~~~~~l~~fi~~~~~Plv~e~t~~n~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v  158 (252)
T 2h8l_A           94 YT-------------EQKMTSGKIKKFIQENIFGICPHMTEDNK--DLIQGKDLLIAYYDVDYEKNAKGSNYWRNRVMMV  158 (252)
T ss_dssp             CC-------------CSSCCHHHHHHHHHHHSSCSSCEECTTTH--HHHSSSSEEEEEECCBTTTBHHHHHHHHHHHHHH
T ss_pred             cC-------------CCCcCHHHHHHHHHhcccCCeeecccccH--hhhcCCCeEEEEeecchhhcchhHHHHHHHHHHH
Confidence            11             12222334444444432222222332222  122344555555543322222    356677888


Q ss_pred             HHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC----CceeeEEEECCCCc
Q 018266          196 YNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI----KGIPALVLIGPDGK  263 (358)
Q Consensus       196 ~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v----~~~P~~~lid~~G~  263 (358)
                      +++|+. .+..+.++++..+.-                       ..+.+.||+    ..+|.++++|.+|+
T Consensus       159 A~~~~~-k~~~~~F~~~d~~~~-----------------------~~~~~~fgl~~~~~~~P~v~i~~~~~~  206 (252)
T 2h8l_A          159 AKKFLD-AGHKLNFAVASRKTF-----------------------SHELSDFGLESTAGEIPVVAIRTAKGE  206 (252)
T ss_dssp             HHHHHH-TTCCCEEEEEETTTT-----------------------HHHHGGGTCCCCSCSSCEEEEECTTSC
T ss_pred             HHHccc-cCceEEEEEEchHHH-----------------------HHHHHHcCCCCccCCCCEEEEEeCcCc
Confidence            999984 123478888876632                       457788999    35899999987654

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=97.20  E-value=0.00064  Score=51.32  Aligned_cols=65  Identities=17%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+++|||+|+...+.|.++    .    -.+  -.+.+|.....-               ......+.+.+|...+|
T Consensus        21 v~vy~~~~Cp~C~~~~~~L~~~----~----i~~--~~~di~~~~~~~---------------~~~~~~l~~~~g~~tvP   75 (113)
T 3rhb_A           21 VVIYSKTWCSYCTEVKTLFKRL----G----VQP--LVVELDQLGPQG---------------PQLQKVLERLTGQHTVP   75 (113)
T ss_dssp             EEEEECTTCHHHHHHHHHHHHT----T----CCC--EEEEGGGSTTHH---------------HHHHHHHHHHHSCCSSC
T ss_pred             EEEEECCCChhHHHHHHHHHHc----C----CCC--eEEEeecCCCCh---------------HHHHHHHHHHhCCCCcC
Confidence            5569999999999988887653    2    233  344554320000               00123466667999999


Q ss_pred             eEEEECCCCcEEe
Q 018266          254 ALVLIGPDGKTIS  266 (358)
Q Consensus       254 ~~~lid~~G~v~~  266 (358)
                      +++ +  +|+.+.
T Consensus        76 ~if-i--~g~~ig   85 (113)
T 3rhb_A           76 NVF-V--CGKHIG   85 (113)
T ss_dssp             EEE-E--TTEEEE
T ss_pred             EEE-E--CCEEEc
Confidence            985 3  677653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	2e-26
d1i5ga_	144	c.47.1.10 (A:) Tryparedoxin II {Crithidia fascicul	3e-08
d1v5na_	89	g.49.1.3 (A:) Pdi-like hypothetical protein At1g60	2e-22
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	7e-18
d1o73a_	144	c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei	9e-09
d1o8xa_	144	c.47.1.10 (A:) Tryparedoxin I {Crithidia fascicula	3e-14
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	6e-12
d2b5xa1	143	c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase	0.003
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	7e-11
d2fy6a1	143	c.47.1.10 (A:33-175) Peptide methionine sulfoxide	0.001
d1sena_	135	c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19	1e-06
d1lu4a_	134	c.47.1.10 (A:) Soluble secreted antigen MPT53 {Myc	1e-06
d1jfua_	176	c.47.1.10 (A:) Membrane-anchored thioredoxin-like	2e-06
d1zzoa1	134	c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacteri	2e-05
d1z6na1	166	c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Ps	8e-05
d1z5ye1	136	c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG	0.002
d1zmaa1	115	c.47.1.1 (A:1-115) Bacterocin transport accessory	0.003

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score =  100 bits (249), Expect = 2e-26
 Identities = 54/134 (40%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
           VL      I +  LAGKT+  YF A WCPP R+FT QLI+ Y          FEV+L+S 
Sbjct: 13  VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHA--EKKNFEVMLISW 70

Query: 215 DRDHKEFDLNHSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D   ++F   ++ MPWLA+P+EDR   + L   F++K IP LV +  D G  I+T  + M
Sbjct: 71  DESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTM 130

Query: 273 I-SLYGAKAFPFTE 285
           +     AK FP+  
Sbjct: 131 VVKDPEAKDFPWPN 144

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

 Score = 49.8 bits (118), Expect = 3e-08
 Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 5/103 (4%)

Query: 25  VEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFIS 84
              L      + L S  GKT+  +FSA+WC P + FTPQL+  Y     +    EV+ IS
Sbjct: 11  TNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLIS 69

Query: 85  FDHDENGFEEHFKSSDGT-LIEEDLIG---LIEDYGADAYPFT 123
           +D     F++++       L  ED  G   L   +   + P  
Sbjct: 70  WDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTL 112

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 89

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 88.1 bits (218), Expect = 2e-22
 Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFW 335
           G+     TE R+ EIE    +     P++VK V H EHEL+L   + Y CD C+  G  W
Sbjct: 1   GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIW 60

Query: 336 AFSCDVCNYDLHPKC 350
           ++ CD C++DLH KC
Sbjct: 61  SYHCDECDFDLHAKC 75

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 77.3 bits (189), Expect = 7e-18
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
            L     ++++  L GKT+ LYF A WCPPCR FT  L E Y +        FEVVL+S 
Sbjct: 13  NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH--VAKNFEVVLISW 70

Query: 215 DRDHKEFDLNHSIMPWLAIPY-EDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEM 272
           D +  +F   +  MPWLA+P+ +     +L + F ++ IP L+ I  D G  I T  +  
Sbjct: 71  DENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTR 130

Query: 273 I-SLYGAKAFPFT 284
           +        FP+ 
Sbjct: 131 VIEDPDGANFPWP 143

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

 Score = 51.5 bits (122), Expect = 9e-09
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 24  GVEFLLSRQGKVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI 83
           G   LLS+ G+V L S  GKT+ L+FSA+WC PC+ FTP L + Y+         EV+ I
Sbjct: 10  GATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHH-VAKNFEVVLI 68

Query: 84  SFDHDENGFEEHFKSSDGTLIEEDLIG----LIEDYGADAYPFT 123
           S+D +E+ F +++       +  D       L + +G ++ P  
Sbjct: 69  SWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTL 112

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]} Length = 144

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

 Score = 67.0 bits (162), Expect = 3e-14
 Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 155 VLSRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST 214
            L R   ++ V  LAGK +  YF A WCPP R FT QLIE Y++   + N          
Sbjct: 11  KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDE 70

Query: 215 DRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPD-GKTISTNGK-EM 272
           + D             +     +   Q L + FN++ IP L+ +  D G  ++T  +  +
Sbjct: 71  EEDGFAGYFAKMPWLAVPFAQSEA-VQKLSKHFNVESIPTLIGVDADSGDVVTTRARATL 129

Query: 273 ISLYGAKAFPFTES 286
           +     + FP+ ++
Sbjct: 130 VKDPEGEQFPWKDA 143

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 60.7 bits (146), Expect = 6e-12
 Identities = 18/129 (13%), Positives = 37/129 (28%), Gaps = 7/129 (5%)

Query: 163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD 222
                +  K   ++F +  C  C+    Q+ E  ++ +   N     +  S D       
Sbjct: 22  TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81

Query: 223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFP 282
              +    +  P    +   L   F  + +PA  +    G+             G     
Sbjct: 82  KETAAEHDITQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHF-------QAGGSGMK 134

Query: 283 FTESRIAEI 291
             E R+  +
Sbjct: 135 MLEKRVNRV 143

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 35  VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE 94
                 G K   + F +  C  CK   PQ+ +  D  + +   + V     + D +  + 
Sbjct: 22  TREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKI 81

Query: 95  HFKSSDGTLIEEDLI----GLIEDYGADAYPFT 123
              +++  + +   +     L + +  +  P  
Sbjct: 82  KETAAEHDITQPIFVDSDHALTDAFENEYVPAY 114

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 2/111 (1%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF--EVVLVSTDR 216
           D+R  +V     K   + F A WCP C S   Q  +   + K ++ +           ++
Sbjct: 12  DNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEK 71

Query: 217 DHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST 267
              +F   ++ + +  +P        + +  NI   P+  LIG DG     
Sbjct: 72  KDGDFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI 122

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]} Length = 143

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 13/96 (13%), Positives = 23/96 (23%), Gaps = 6/96 (6%)

Query: 34  KVPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFE 93
              +     K   + F A+WC  C +   Q  +     +     L  +       E    
Sbjct: 15  PASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVASPGFLHEKKDG 74

Query: 94  EHFKSSDGTLIEEDLIGLIED------YGADAYPFT 123
           +  K   G    +  +                YP  
Sbjct: 75  DFQKWYAGLNYPKLPVVTDNGGTIAQSLNISVYPSW 110

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 135

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 6/114 (5%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD--LNHSI 227
           G  + +     WC  C++   +  E     + + N     V+V+ + + +  D   +   
Sbjct: 25  GLPLMVIIHKSWCGACKALKPKFAESTEISELSHNF----VMVNLEDEEEPKDEDFSPDG 80

Query: 228 MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAF 281
                I + D + +    I N  G P+        + +    KE        AF
Sbjct: 81  GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQERLTGDAF 134

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.0 bits (105), Expect = 1e-06
 Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 6/105 (5%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
                  + L GK   L+F   WCP C +    L +V                    R  
Sbjct: 13  SGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANPAVTFVGI------ATRAD 66

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGK 263
                +      L     + A   +   +N+   PA V    DG 
Sbjct: 67  VGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQPAFVFYRADGT 111

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]} Length = 176

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

 Score = 45.4 bits (106), Expect = 2e-06
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D +   +S+  GKT+ +   A WC PCR     L E+  +L         + + + D + 
Sbjct: 45  DGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTRDPEK 104

Query: 219 KEFDLNHSIMPWLAIPYEDRAR--QDLCRIFNIKGIPALVLIGPDGKTIST 267
            +  L  + +  L    + +A+  QDL  I    G+P  VL+ P G  I+T
Sbjct: 105 PKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT 155

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 159 DHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH 218
           D        L GK   L+F A WCP C+     + +V              +        
Sbjct: 14  DGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQE 73

Query: 219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNG 269
                       LA          +   F +   PA   + P G      G
Sbjct: 74  FVNKYPVKTFTQLADT-----DGSVWANFGVTQQPAYAFVDPHGNVDVVRG 119

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 40.3 bits (93), Expect = 8e-05
 Identities = 20/135 (14%), Positives = 35/135 (25%), Gaps = 17/135 (12%)

Query: 165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN 224
           +  +  +   L  G  WCP C+   + L           N    ++      D     L 
Sbjct: 49  LQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP---NIELAIISKGRAEDDLRQRLA 105

Query: 225 HSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFT 284
              +    +   D        +      P  VL G               L   KA  + 
Sbjct: 106 LERIAIPLVLVLDEEFNL---LGRFVERPQAVLDGGPQA-----------LAAYKAGDYL 151

Query: 285 ESRIAEIETALKKEG 299
           E  I ++   ++   
Sbjct: 152 EHAIGDVLAIIEGAA 166

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 23/129 (17%), Positives = 35/129 (27%), Gaps = 14/129 (10%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMP 229
           GK + L   A WCP  R+    L ++             VV ++   D ++       + 
Sbjct: 20  GKPVLLNVWATWCPTSRAEHQYLNQLS-------AQGIRVVGMNYKDDRQKAISWLKELG 72

Query: 230 WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIA 289
                        L     + G P   LI  +G              G       E  I 
Sbjct: 73  NPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYR-------HAGDLNPRVWEEEIK 125

Query: 290 EIETALKKE 298
            +     KE
Sbjct: 126 PLWEKYSKE 134

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]} Length = 115

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 11/38 (28%), Positives = 13/38 (34%)

Query: 170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCF 207
            +T   + G   CP CR F   L  V  E K       
Sbjct: 26  KETATFFIGRKTCPYCRKFAGTLSGVVAETKAHIYFIN 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.92
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.91
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.9
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.9
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.89
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.88
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.88
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.86
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.85
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.84
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.84
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.83
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.79
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.78
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.77
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.76
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.72
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.72
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.71
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.71
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.7
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.69
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.69
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.69
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.67
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	99.66
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.64
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.64
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	99.63
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.63
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.61
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.61
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.61
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.6
d1v5na_	89	Pdi-like hypothetical protein At1g60420 {Thale cre	99.6
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.6
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	99.59
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.58
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.58
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.57
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.57
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	99.56
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.56
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.55
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	99.54
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.54
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.54
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.54
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.53
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.53
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.52
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.52
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.51
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.51
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.51
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	99.5
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	99.49
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.49
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.48
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.46
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.43
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.43
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.43
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.41
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	99.41
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.4
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	99.39
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	99.38
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.37
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	99.36
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.36
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	99.34
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.33
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.32
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.32
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	99.32
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.32
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	99.32
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.32
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	99.31
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.31
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	99.3
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.28
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	99.27
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	99.26
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.25
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	99.24
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	99.23
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	99.23
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	99.22
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	99.21
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	99.21
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	99.19
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	99.19
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	99.19
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.18
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	99.17
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	99.16
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	99.15
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.15
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.13
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	99.12
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	99.12
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	99.1
d2djja1	116	Protein disulfide isomerase, PDI {Fungi (Humicola	99.09
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.09
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.09
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	99.09
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.08
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.08
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.06
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	99.06
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	99.04
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.04
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.04
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	99.03
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	99.02
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	99.01
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	99.01
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	98.99
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	98.98
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	98.96
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	98.96
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.88
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	98.85
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.83
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	98.82
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	98.8
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	98.79
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	98.78
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	98.77
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	98.7
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.69
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.67
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	98.66
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	98.66
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	98.65
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	98.62
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	98.49
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.48
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	98.47
d1g7ea_	122	Endoplasmic reticulum protein ERP29, N-terminal do	98.46
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	98.18
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	98.16
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	98.09
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	98.05
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	98.04
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	97.88
d1wjka_	100	Thioredoxin-like structure containing protein C330	97.87
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	97.45
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	97.32
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	97.16
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	97.03
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	96.97
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	96.91
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	96.72
d2fc7a1	69	Zinc finger ZZ-type-containing protein 3, ZZZ3 {Hu	96.68
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	96.44
d1tota1	52	CREB-binding protein, CBP {Mouse (Mus musculus) [T	96.3
d2dipa1	85	Zinc finger ZZ-type-containing protein 2 {Human (H	96.16
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	96.09
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.06
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	95.93
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	95.74
d1kbea_	49	Kinase suppressor of Ras, Ksr {Mouse (Mus musculus	95.52
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	95.3
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	95.15
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	95.04
d1faqa_	52	RAF-1 {Human (Homo sapiens) [TaxId: 9606]}	94.96
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	94.89
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	94.64
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	94.63
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	94.49
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.36
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	94.18
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	94.13
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	93.48
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	93.46
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	93.24
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	93.0
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	92.9
d1xa6a3	62	Beta-chimaerin, middle domain {Human (Homo sapiens	92.49
d2axoa1	225	Hypothetical protein Atu2684 {Agrobacterium tumefa	92.05
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	91.36
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	90.72
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	90.44
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	90.38
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	90.38
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	90.16
d1ptqa_	50	Protein kinase C-delta (PKCdelta) {Mouse (Mus musc	90.1
d2djka1	133	Protein disulfide isomerase, PDI {Fungi (Humicola	89.46
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	88.42
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	87.22
d2b5ea3	125	Protein disulfide isomerase, PDI {Baker's yeast (S	84.35

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.92  E-value=1e-24  Score=174.83  Aligned_cols=136  Identities=35%  Similarity=0.661  Sum_probs=116.0

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      .+++..|+++. ..+|.++++++++||+|+|+|||+||++|+.++|.|.+++++|..  +.++.|++|+.|.+.+.+.++
T Consensus         3 ~~~k~~P~~~~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~--~~~~~vi~is~d~~~~~~~~~   80 (144)
T d1o73a_           3 GLAKYLPGATNLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHV--AKNFEVVLISWDENESDFHDY   80 (144)
T ss_dssp             GGGGTSCTTCCBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHH
T ss_pred             CcccCCCCceeeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhh--ccCeEEEEEecchhHHHHHHH
Confidence            35788999987 677888999999999999999999999999999999999999963  368999999999999999999


Q ss_pred             hhcCCccccccCch-hHHHHHHHcCCCceeeEEEECCC-CcEEecCcchhh-hhcCCCCCCC
Q 018266          225 HSIMPWLAIPYEDR-ARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMI-SLYGAKAFPF  283 (358)
Q Consensus       225 ~~~~~~~~~~~~~~-~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~-~~~g~~~~p~  283 (358)
                      +..++|..+++..+ ....+.+.|++.++|+++|||++ |+|+.++++..+ ....+..|||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~l~~~y~v~~~Pt~~lID~~~G~Ii~~~~~~~~~~d~~~~~fpw  142 (144)
T d1o73a_          81 YGKMPWLALPFDQRSTVSELGKTFGVESIPTLITINADTGAIIGTQARTRVIEDPDGANFPW  142 (144)
T ss_dssp             HTTCSSEECCTTCHHHHHHHHHHHTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             HHhccccceeeeccchHHHHHHHcCCCcCCEEEEEECCCCEEEeecchhhhhhCcccccCCC
Confidence            99999988888654 45578999999999999999997 999998865433 3334555555

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.91  E-value=2.6e-24  Score=172.17  Aligned_cols=125  Identities=42%  Similarity=0.752  Sum_probs=109.8

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      +.+|..+++++++||+|+|+|||+||++|+.++|.|.++++++++  +.+++|++|+.|.+.+++.+++.+++|..+++.
T Consensus        15 ~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~--~~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1i5ga_          15 KGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAE--KKNFEVMLISWDESAEDFKDYYAKMPWLALPFE   92 (144)
T ss_dssp             ETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCSSHHHHHHHHTTCSSEECCTT
T ss_pred             cCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHh--ccCcEEEEEeccccHHHHHHHHHhCCCCceeeE
Confidence            667889999999999999999999999999999999999999974  357999999999999999999999999888886


Q ss_pred             chh-HHHHHHHcCCCceeeEEEECCC-CcEEecCcchhhhhc-CCCCCCC
Q 018266          237 DRA-RQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMISLY-GAKAFPF  283 (358)
Q Consensus       237 ~~~-~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~~~-g~~~~p~  283 (358)
                      +.. ...+.+.|+|.++|+++|||++ |+|+.++|+..+... .+..|||
T Consensus        93 d~~~~~~l~~~y~v~~iPt~~lid~~~G~vi~~~g~~~v~~d~~~~~fpw  142 (144)
T d1i5ga_          93 DRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPW  142 (144)
T ss_dssp             CHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHHHCTTCTTTTC
T ss_pred             ChHHHHHHHHHCCCCCcCEEEEEeCCCCEEEeehhHHHHhhCcccccCCC
Confidence            654 3468899999999999999996 999999987777543 4556665

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.90  E-value=2e-23  Score=167.25  Aligned_cols=137  Identities=34%  Similarity=0.663  Sum_probs=118.1

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNH  225 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~  225 (358)
                      +++..|+|.+ +.+|+++++++++||+|+|+||++||++|+.++|.|.+++++|..  ..++.+++|+.|.+.+.+..++
T Consensus         2 ~~k~~P~~~~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~--~~~~~~v~is~d~~~~~~~~~~   79 (144)
T d1o8xa_           2 LDKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHE--SKNFEVVFCTWDEEEDGFAGYF   79 (144)
T ss_dssp             GGGTSTTCCEEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTT--TTTEEEEEEECCCSHHHHHHHH
T ss_pred             CCCCCCCcEeEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccc--ccccccccccccccHHHHHHHH
Confidence            4678999998 899999999999999999999999999999999999999999974  3579999999999999999999


Q ss_pred             hcCCccccccCc-hhHHHHHHHcCCCceeeEEEECCC-CcEEecCcchhhh-hcCCCCCCCch
Q 018266          226 SIMPWLAIPYED-RARQDLCRIFNIKGIPALVLIGPD-GKTISTNGKEMIS-LYGAKAFPFTE  285 (358)
Q Consensus       226 ~~~~~~~~~~~~-~~~~~l~~~~~v~~~P~~~lid~~-G~v~~~~g~~~~~-~~g~~~~p~~~  285 (358)
                      ....|..+++.. +....+.+.|+|.++|+++|||++ |+|+..+|+.... ......|||.+
T Consensus        80 ~~~~~~~~~~~~~d~~~~l~~~y~v~~~Pt~~liD~~~G~Vi~~~~~~~~~~d~~~~~~~w~~  142 (144)
T d1o8xa_          80 AKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVTTRARATLVKDPEGEQFPWKD  142 (144)
T ss_dssp             TTCSSEECCGGGHHHHHHHHHHTTCCSSSEEEEEETTTCCEEESCHHHHHTTCTTCTTTTCCC
T ss_pred             hhccccceeeecccchhhHHHHcCCCcCCEEEEEeCCCCEEEEEechhhhhhCcccccCCCCC
Confidence            988888888754 456789999999999999999997 8999988755443 33455556654

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=6.6e-24  Score=177.20  Aligned_cols=146  Identities=11%  Similarity=0.119  Sum_probs=116.4

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~  218 (358)
                      +|.++|+|.+ +.+|+.+++++++||+|||+||++|||+|+.++|.|.+++++|+    +++.+++|....       +.
T Consensus         8 vG~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~----~~v~~v~i~snd~~~~~~~~~   83 (187)
T d2cvba1           8 LESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYR----GKVAFVGINANDYEKYPEDAP   83 (187)
T ss_dssp             TTCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTT----TTEEEEEEECCCTTTCGGGSH
T ss_pred             CCCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcc----ccceeeeeeccccccccccch
Confidence            5889999999 99999999999999999999999999999999999999999997    568888887532       33


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      +.+.++....+ +.+|+..|....+++.|++.++|+++|||++|+|+++++.+..  ++..    ......+|.++|++.
T Consensus        84 e~~~~~~~~~~-~~~p~l~D~~~~~~~~~~v~~~P~~~liD~~G~i~y~G~idd~--~~~~----~~~~~~~L~~Ai~~l  156 (187)
T d2cvba1          84 EKMAAFAEEHG-IFFPYLLDETQEVAKAYRALRTPEVFLFDERRLLRYHGRVNDN--PKDP----SKVQSHDLEAAIEAL  156 (187)
T ss_dssp             HHHHHHHHHHT-CCSCEEECSSSHHHHHTTCCEESEEEEECTTCBEEEEECSSSC--TTCG----GGCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CcceeeechhhhhcccccccceeeEEEEcCCCeEEEEeeecCC--CCCC----CCCCHHHHHHHHHHH
Confidence            56666666554 5678877888899999999999999999999999998643221  1111    112234677778887


Q ss_pred             cCCCC
Q 018266          299 GDALP  303 (358)
Q Consensus       299 ~~~~~  303 (358)
                      +++-+
T Consensus       157 l~g~~  161 (187)
T d2cvba1         157 LRGEE  161 (187)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            77655

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=3.3e-23  Score=163.89  Aligned_cols=114  Identities=22%  Similarity=0.272  Sum_probs=101.9

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      |++.++|++ +.+|+++++++++||+++|+||++|||+|+.++|.|.++++++     .++.+++|+.+.+.+.+.++..
T Consensus         1 ~d~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~-----~~v~~v~v~~~~~~~~~~~~~~   75 (134)
T d1lu4a_           1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAAN-----PAVTFVGIATRADVGAMQSFVS   75 (134)
T ss_dssp             CGGGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHC-----TTSEEEEEECSSCHHHHHHHHH
T ss_pred             CCCCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhh-----ccccccccccccchhhhhhhhh
Confidence            467889999 9999999999999999999999999999999999999998875     4588999999988888888888


Q ss_pred             cCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .++ +.+|...|....+++.|++.++|++++||++|++++.
T Consensus        76 ~~~-~~~p~~~d~~~~~~~~~~v~~~P~~~lid~~G~i~~v  115 (134)
T d1lu4a_          76 KYN-LNFTNLNDADGVIWARYNVPWQPAFVFYRADGTSTFV  115 (134)
T ss_dssp             HHT-CCSEEEECTTSHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             hhc-cccceeeCchHHHHHHcCCCcCCEEEEEeCCCeEEEE
Confidence            665 4667777777889999999999999999999999765

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=6.3e-23  Score=162.90  Aligned_cols=116  Identities=22%  Similarity=0.467  Sum_probs=106.4

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhh
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHS  226 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~  226 (358)
                      |.++|+|.+ +.+|+++++++++||+++|+||++||++|..+++.+.++++++.+   .++.|++|+++.+.+.+.++..
T Consensus         2 G~~~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~v~i~~~~~~~~~~~~~~   78 (137)
T d1st9a_           2 GSDAPNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKS---QGVEIVAVNVGESKIAVHNFMK   78 (137)
T ss_dssp             CEECCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGG---GTEEEEEEEESCCHHHHHHHHH
T ss_pred             cCcCCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccc---cccccccccccchhhhHHHHHH
Confidence            678999999 899999999999999999999999999999999999999999986   7899999999988999999888


Q ss_pred             cCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          227 IMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +++ +.+|+..|....+++.|++.++|+++|+|++|+++++
T Consensus        79 ~~~-~~~~~~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~  118 (137)
T d1st9a_          79 SYG-VNFPVVLDTDRQVLDAYDVSPLPTTFLINPEGKVVKV  118 (137)
T ss_dssp             HTT-CCSCEEEETTSHHHHHTTCCSSCEEEEECTTSEEEEE
T ss_pred             HcC-CCccccccccchhhhhhhccccceEEEECCCCEEEEE
Confidence            765 3466666667889999999999999999999999988

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.6e-22  Score=159.87  Aligned_cols=112  Identities=18%  Similarity=0.244  Sum_probs=101.4

Q ss_pred             CCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCc
Q 018266          152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW  230 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~  230 (358)
                      .+|++ +.+|+++++++++||+++|+||++||++|+.++|.|.+++++++     +..+++|+.+........++..+.+
T Consensus         6 ~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~-----~~~~v~v~~~d~~~~~~~~~~~~~~   80 (134)
T d1zzoa1           6 LQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHP-----EVTFVGVAGLDQVPAMQEFVNKYPV   80 (134)
T ss_dssp             GCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSSCHHHHHHHHHHTTC
T ss_pred             cceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhc-----ccccccccccccchhHHHHHHhcCC
Confidence            46888 99999999999999999999999999999999999999999885     3678888888888889999998888


Q ss_pred             cccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          231 LAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       231 ~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..+|...|....+.+.|++.++|++++||++|+|++..
T Consensus        81 ~~~~~l~D~~~~~~~~~~v~~~P~~~iiD~~G~i~~~~  118 (134)
T d1zzoa1          81 KTFTQLADTDGSVWANFGVTQQPAYAFVDPHGNVDVVR  118 (134)
T ss_dssp             TTSEEEECTTCHHHHHTTCCSSSEEEEECTTCCEEEEE
T ss_pred             cceeEEeeccchHHHhcCCCccCeEEEECCCCeEEEEE
Confidence            88888877778999999999999999999999997753

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.86  E-value=2.4e-22  Score=160.71  Aligned_cols=108  Identities=22%  Similarity=0.316  Sum_probs=98.1

Q ss_pred             cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CHHHHHHhhhcCCcc
Q 018266          157 SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DHKEFDLNHSIMPWL  231 (358)
Q Consensus       157 ~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~~~~~~~~~~~~~~  231 (358)
                      +.+|+++++.+++||+++|+|||+||++|+.++|.|.+++++++.   .++.+++|+.+.     ....+.+++....+.
T Consensus        10 ~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~---~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~   86 (143)
T d2fy6a1          10 TADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKF---SSANLITVASPGFLHEKKDGDFQKWYAGLNYP   86 (143)
T ss_dssp             ETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGG---TTSEEEEEECTTSTTCCCTTHHHHHHTTSCCT
T ss_pred             CCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhcc---CCcEEEEEeeeecccccchhhhhhhhhhcCCc
Confidence            789999999999999999999999999999999999999999986   789999998753     335677778888888


Q ss_pred             ccccCchhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          232 AIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       232 ~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+|+..|....+++.|++.++|++++||++|+|+++
T Consensus        87 ~~~~~~D~~~~~~~~~~v~~~P~~~liD~~G~i~~~  122 (143)
T d2fy6a1          87 KLPVVTDNGGTIAQSLNISVYPSWALIGKDGDVQRI  122 (143)
T ss_dssp             TSCEEECTTCHHHHHTTCCSSSEEEEECTTSCEEEE
T ss_pred             ccccccccchHHHHHcCCCccCEEEEECCCCEEEEE
Confidence            899888888899999999999999999999999987

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.3e-22  Score=157.28  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=90.2

Q ss_pred             cCCCceeeeccc-CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVSEL-AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      +..|+.++.+.+ +||+|+|+|||+||++|+.++|.|+++++       .++.++++..+.+......++....+...+.
T Consensus         6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~-------~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~   78 (136)
T d1z5ye1           6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA-------QGIRVVGMNYKDDRQKAISWLKELGNPYALS   78 (136)
T ss_dssp             SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH-------TTCCEEEEEESCCHHHHHHHHHHHCCCCSEE
T ss_pred             cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh-------hhhhhcccccccchhhhHHHHHHcCCcccee
Confidence            566899999888 89999999999999999999999988743       4577999999988888888887666655555


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ..+....+.+.|++.++|+++|||++|+|+.+.
T Consensus        79 ~~d~~~~~~~~~~v~~~P~~~liD~~G~i~~~~  111 (136)
T d1z5ye1          79 LFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRH  111 (136)
T ss_dssp             EEESSCHHHHHHTCCSBSEEEEECTTSCEEEEE
T ss_pred             ecccchhHHHhcccCCcceEEEEcCCCEEEEEE
Confidence            556677899999999999999999999999873

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=1.5e-21  Score=156.05  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=100.1

Q ss_pred             hhhccCCcee-c--CCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-----CH
Q 018266          147 LAIEGRDYVL-S--RDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-----DH  218 (358)
Q Consensus       147 ~~~~~p~f~l-~--~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-----~~  218 (358)
                      +|.++|+|+. +  .+|+.++++.+.||+++|+||++||++|..++|.|++++++++    +++.+++|+++.     +.
T Consensus         3 ~g~~aP~~~~~~~~~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~----~~~~~i~v~~~~~~~~~~~   78 (143)
T d2b5xa1           3 LRQPMPELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQ----DQLNVVAVHMPRSEDDLDP   78 (143)
T ss_dssp             TTCBCCCCCCCSEEESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTSEEEEEECCCSTTTSSH
T ss_pred             CCCcCCCCcCCccCcCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhh----ccccceeEEeeccccccch
Confidence            5788999986 2  5888899999999999999999999999999999999999997    568899998753     34


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      +.+.++...+++ .+|...|....+.+.|++.++|++++||++|+|+++.
T Consensus        79 ~~~~~~~~~~~~-~~p~~~D~~~~~~~~~~v~~~P~~~~id~~G~i~~~~  127 (143)
T d2b5xa1          79 GKIKETAAEHDI-TQPIFVDSDHALTDAFENEYVPAYYVFDKTGQLRHFQ  127 (143)
T ss_dssp             HHHHHHHHHTTC-CSCEEECSSCHHHHHTCCCCSSEEEEECTTCBEEEEE
T ss_pred             hhhhhHHHhhcc-CccccccCccchHHHcCCCcCCEEEEECCCCEEEEEE
Confidence            566777776664 5677667778899999999999999999999999873

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.84  E-value=1.2e-20  Score=156.12  Aligned_cols=117  Identities=29%  Similarity=0.414  Sum_probs=99.5

Q ss_pred             hhccCCcee-cCCCceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-CHHHHHHhh
Q 018266          148 AIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-DHKEFDLNH  225 (358)
Q Consensus       148 ~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-~~~~~~~~~  225 (358)
                      +.++|+|.+ +.+|+.+++++++||+|||+||++||++|..+.+.++++++++..   .++.|++|++|. +.+.+.+++
T Consensus        33 ~~~~Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~---~~~~vv~vs~d~~~~~~~~~~~  109 (176)
T d1jfua_          33 PLKLPDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSG---PNFEVVAINIDTRDPEKPKTFL  109 (176)
T ss_dssp             CCBCCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCB---TTEEEEEEECCCSCTTHHHHHH
T ss_pred             CCcCCCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccc---cccccccccccccchhhhhhhH
Confidence            557899999 999999999999999999999999999999999999999999986   889999999985 466788888


Q ss_pred             hcCCccccccCch----hHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          226 SIMPWLAIPYEDR----ARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       226 ~~~~~~~~~~~~~----~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +..++...++..+    ....+...|++.++|+++|||++|+|+.+
T Consensus       110 ~~~~~~~~~~~~d~~~~~~~~~~~~~~v~~~P~~~lID~~G~I~~~  155 (176)
T d1jfua_         110 KEANLTRLGYFNDQKAKVFQDLKAIGRALGMPTSVLVDPQGCEIAT  155 (176)
T ss_dssp             HHTTCCTTCCEECTTCHHHHHHHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred             hhhCCcceeeeecchhHHHHHHhhhccCCCCCeEEEEcCCCEEEEE
Confidence            8776554444333    23445566788999999999999999988

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.83  E-value=1.8e-21  Score=155.76  Aligned_cols=103  Identities=16%  Similarity=0.194  Sum_probs=88.9

Q ss_pred             CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchh
Q 018266          160 HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRA  239 (358)
Q Consensus       160 g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      +..+++++++||+++|+||++||++|+.++|.+.++++.+      ++.+++|+.+.......++...+.+...+...+.
T Consensus        21 ~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~   94 (144)
T d1knga_          21 VPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK------RFQLVGINYKDAADNARRFLGRYGNPFGRVGVDA   94 (144)
T ss_dssp             CCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT------TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEET
T ss_pred             CCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc------CceeEEEEeeechHHHHHHHHHcCCccccccccc
Confidence            3668889999999999999999999999999998875543      4689999999888888888887666555566666


Q ss_pred             HHHHHHHcCCCceeeEEEECCCCcEEecC
Q 018266          240 RQDLCRIFNIKGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       240 ~~~l~~~~~v~~~P~~~lid~~G~v~~~~  268 (358)
                      ...+.+.|++.++|++++||++|+|+++.
T Consensus        95 ~~~~~~~~~v~~~P~~~liD~~G~i~~~~  123 (144)
T d1knga_          95 NGRASIEWGVYGVPETFVVGREGTIVYKL  123 (144)
T ss_dssp             TSHHHHHTTCCSSCEEEEECTTSBEEEEE
T ss_pred             cchhhhhcCccccceEEEEcCCCeEEEEE
Confidence            78899999999999999999999999883

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.79  E-value=2.9e-19  Score=145.71  Aligned_cols=118  Identities=23%  Similarity=0.247  Sum_probs=97.8

Q ss_pred             hhhhccCCcee-c----CCCceeeecccCCcEEEEEEecc-CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHH
Q 018266          146 LLAIEGRDYVL-S----RDHRKITVSELAGKTIGLYFGAH-WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHK  219 (358)
Q Consensus       146 ~~~~~~p~f~l-~----~~g~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~  219 (358)
                      ++|.++|+|.+ +    .++.++++++++||++||+||.. |||+|..+++.|.+++++|++   .+++|++|+.|.. +
T Consensus         2 lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~---~g~~vv~IS~D~~-~   77 (166)
T d1we0a1           2 LIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKK---LGVEVYSVSTDTH-F   77 (166)
T ss_dssp             CTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHH---TTEEEEEEESSCH-H
T ss_pred             CCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcc---cceEEEecccccH-H
Confidence            68999999998 3    34467999999999999999966 999999999999999999987   8999999999953 3


Q ss_pred             HHHHhhhcC---CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          220 EFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       220 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ...++..++   ..+.+|+..|....++++||+.      ..|+++|||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~  134 (166)
T d1we0a1          78 VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAI  134 (166)
T ss_dssp             HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHhhhhhhhcccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEE
Confidence            333333332   2356788888889999999984      56889999999999886

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.78  E-value=1.6e-19  Score=146.88  Aligned_cols=141  Identities=19%  Similarity=0.281  Sum_probs=108.7

Q ss_pred             hhhccCCcee-cCCCceeeeccc--CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSEL--AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~--~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      +|.++|+|++ +.+|+.++++++  +||+++|.|| ++|||+|..+++.+.++++++++   .++.|++|+.|. .+...
T Consensus         4 vG~~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~---~~~~vv~is~d~-~~~~~   79 (160)
T d2cx4a1           4 LGEKAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEK---ANAEVLAISVDS-PWCLK   79 (160)
T ss_dssp             TTSBCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTST---TCCEEEEEESSC-HHHHH
T ss_pred             CCCCCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccc---cccccccccccc-hhhhh
Confidence            5899999999 999999999998  7899999998 89999999999999999999876   889999999874 44455


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCC----------ceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHH
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIK----------GIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIE  292 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~----------~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~  292 (358)
                      ++..... +.+++..|....+++.||+.          ..|+++|||++|+|+++.       .+.  .+..+...+++.
T Consensus        80 ~~~~~~~-~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~-------~~~--~~~~~~~~~eil  149 (160)
T d2cx4a1          80 KFKDENR-LAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKW-------VTD--NPLNEPDYDEVV  149 (160)
T ss_dssp             HHHHHHT-CSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEE-------ECS--STTCCCCHHHHH
T ss_pred             hhcccce-eeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEE-------EeC--CCCCCCCHHHHH
Confidence            5444332 34566667778899999983          468899999999999874       222  133344466666


Q ss_pred             HHHHHhcCC
Q 018266          293 TALKKEGDA  301 (358)
Q Consensus       293 ~~l~~~~~~  301 (358)
                      +.+++.+.+
T Consensus       150 ~~l~~l~~e  158 (160)
T d2cx4a1         150 REANKIAGE  158 (160)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHccc
Confidence            666665543

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=9.6e-19  Score=143.40  Aligned_cols=119  Identities=15%  Similarity=0.211  Sum_probs=100.5

Q ss_pred             hhhccCCcee-cCCC---------------ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEE
Q 018266          147 LAIEGRDYVL-SRDH---------------RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEV  209 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g---------------~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~v  209 (358)
                      +|.++|+|++ +..|               +.+++++++||+++|+|| +.|||.|..+++.|.+.+++|++   .++++
T Consensus         5 vGd~aPdF~l~~~~g~~~~~~~~~~~~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~---~g~~v   81 (169)
T d2bmxa1           5 IGDQFPAYQLTALIGGDLSKVDAKQPGDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFED---RDAQI   81 (169)
T ss_dssp             TTCBCCCCEEEEECSSCGGGSCCSSGGGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHT---TTEEE
T ss_pred             CCCCCCCCEEeeccCCcccccccccccccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccc---cCcce
Confidence            5899999998 5555               678999999999999998 99999999999999999999987   88999


Q ss_pred             EEEeCCCCH--HHHHHhhhcCCccccccCchhHHHHHHHcCC-----CceeeEEEECCCCcEEecC
Q 018266          210 VLVSTDRDH--KEFDLNHSIMPWLAIPYEDRARQDLCRIFNI-----KGIPALVLIGPDGKTISTN  268 (358)
Q Consensus       210 v~v~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v-----~~~P~~~lid~~G~v~~~~  268 (358)
                      ++|+.|...  .+|.+.......+.+|+..|.+..++++||+     ...|+.+|||++|+|++..
T Consensus        82 v~is~d~~~~~~~~~~~~~~~~~~~f~ll~D~~~~v~~~ygv~~~~~~~~r~~fvID~~G~I~~~~  147 (169)
T d2bmxa1          82 LGVSIDSEFAHFQWRAQHNDLKTLPFPMLSDIKRELSQAAGVLNADGVADRVTFIVDPNNEIQFVS  147 (169)
T ss_dssp             EEEESSCHHHHHHHHHHCTTGGGCCSCEEECTTSHHHHHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred             eeccccchhhhhhhcccccccccceEEEEeccHHHHHHHcCCCccCCccceeEEEEcCCCEEEEEE
Confidence            999999743  3444444433446778888888999999998     6789999999999998873

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.76  E-value=1.9e-18  Score=141.38  Aligned_cols=119  Identities=18%  Similarity=0.268  Sum_probs=97.6

Q ss_pred             hhhhccCCce----e-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH-
Q 018266          146 LLAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH-  218 (358)
Q Consensus       146 ~~~~~~p~f~----l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~-  218 (358)
                      -+|.++|+|+    + +.+|+++++++++||+|+|+|| +.||++|..+++.|.+++++|++   .+++|++|+.|... 
T Consensus         4 kvG~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~---~~~~v~~is~d~~~~   80 (167)
T d1e2ya_           4 KLNHPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAE---INTEVISCSCDSEYS   80 (167)
T ss_dssp             CTTSBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHT---TTEEEEEEESSCHHH
T ss_pred             cCCCCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhc---CceEEEeecCCcHHh
Confidence            3689999998    3 6789999999999999999998 99999999999999999999987   89999999998643 


Q ss_pred             -HHHHHhhhcC---CccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          219 -KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 -~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                       ..+.......   .-..++...+....+.+.|++.      ..|+++|||++|+|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~  139 (167)
T d1e2ya_          81 HLQWTSVDRKKGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQI  139 (167)
T ss_dssp             HHHHHHSCGGGTCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHHHhhHHHhcccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEE
Confidence             2333322211   1245666777788999999982      46789999999999877

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.72  E-value=1.6e-17  Score=138.17  Aligned_cols=118  Identities=15%  Similarity=0.222  Sum_probs=100.0

Q ss_pred             hhhccCCce----e-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          147 LAIEGRDYV----L-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       147 ~~~~~p~f~----l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      .+.++|+|+    + +.+|+++++++++||+|||+|| +.||+.|..+++.|.+++++++.   .+++|++|+.|...  
T Consensus         5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~---~g~~VlgIS~Ds~~s~   81 (194)
T d1uula_           5 DLHPAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSD---IGCEVLACSMDSEYSH   81 (194)
T ss_dssp             TTSBCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             cCCCCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhcc---CceEEEEEecCchhhh
Confidence            367899998    4 6788899999999999999999 99999999999999999999987   89999999999643  


Q ss_pred             HHHHHhhh---cCCccccccCchhHHHHHHHcCC------CceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHS---IMPWLAIPYEDRARQDLCRIFNI------KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v------~~~P~~~lid~~G~v~~~  267 (358)
                      ..|.+...   ...-+.+|+..|....+++.||+      ...|++++||++|+|++.
T Consensus        82 ~~~~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~  139 (194)
T d1uula_          82 LAWTSIERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQI  139 (194)
T ss_dssp             HHHHHSCGGGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             hhhhhhhhhhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEE
Confidence            44444333   22346778888999999999999      347889999999999987

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.72  E-value=2.3e-17  Score=134.83  Aligned_cols=119  Identities=14%  Similarity=0.193  Sum_probs=99.0

Q ss_pred             hhhhccCCcee-cCCC-----ceeeecccCCc-EEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC
Q 018266          146 LLAIEGRDYVL-SRDH-----RKITVSELAGK-TIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD  217 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g-----~~~~l~~~~~k-~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~  217 (358)
                      ++|.++|||++ +.+|     +.++|++++|| +|+|+|| +.|||.|..+++.+++.++++++   .+++|++|+.|..
T Consensus         2 lVG~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~Vvgis~d~~   78 (170)
T d1zofa1           2 VVTKLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHE---KGFNVIGVSIDSE   78 (170)
T ss_dssp             CTTSBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHH---TTEEEEEEESSCH
T ss_pred             CCCCcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhcc---CCeeEecccccch
Confidence            57999999999 5655     47999999985 8999999 99999999999999999999987   8999999999975


Q ss_pred             H--HHHHHhhhcC---CccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEec
Q 018266          218 H--KEFDLNHSIM---PWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTIST  267 (358)
Q Consensus       218 ~--~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~  267 (358)
                      .  ..|.+.....   ..+.+|...|....+.+.||+.     ..|+.+|||++|+|++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~v~~~ygv~~~~~~~~r~tfvID~~G~I~~~  138 (170)
T d1zofa1          79 QVHFAWKNTPVEKGGIGQVSFPMVADITKSISRDYDVLFEEAIALRGAFLIDKNMKVRHA  138 (170)
T ss_dssp             HHHHHHHTSCGGGTCCCCCSSCEEECTTSHHHHHTTCEETTTEECEEEEEEETTTEEEEE
T ss_pred             hhHHHHHhhhhhcccccCcccccccccccHHHHHcCCCccccceeEEEEEEcCCCeEEEE
Confidence            4  3444444322   2456677788889999999984     57899999999999876

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6e-17  Score=130.76  Aligned_cols=116  Identities=17%  Similarity=0.251  Sum_probs=96.6

Q ss_pred             hccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHH
Q 018266          149 IEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEF  221 (358)
Q Consensus       149 ~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~  221 (358)
                      .++|+|++    +.+|+.++|++++||+|+|+|| +.|||.|..+++.++++++++.+   .+.+|++|+.|...  ..|
T Consensus         1 ~~AP~F~l~~~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~---~~~~vigIS~d~~~~~~~~   77 (158)
T d1zyea1           1 QHAPYFKGTAVVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHD---VNCEVVAVSVDSHFSHLAW   77 (158)
T ss_dssp             SBCCCCEEEEECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHHHHHH
T ss_pred             CCCCCCccceeeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhc---CCceEEeccCcCHHHHHHH
Confidence            36899986    4466789999999999999999 89999999999999999999987   89999999999643  334


Q ss_pred             HHhhh---cCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          222 DLNHS---IMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       222 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      .+...   ....+.+|...|....+.+.||+.      ..|+++|||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~  132 (158)
T d1zyea1          78 INTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHL  132 (158)
T ss_dssp             HTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HhhhHhhccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEE
Confidence            33322   123567888888889999999985      46789999999999976

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=1.7e-17  Score=133.58  Aligned_cols=117  Identities=10%  Similarity=0.189  Sum_probs=91.5

Q ss_pred             hhhccCCcee-cCCCceeeecccCCc-EEE-EEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGK-TIG-LYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k-~vl-v~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      +|.++|+|++ +.+|+++++++++|| +++ ++||++|||+|..+++.|.++++++..   .+++|++|+.|. .+...+
T Consensus         4 vG~~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~---~~~~vi~vs~d~-~~~~~~   79 (153)
T d1xvwa1           4 VGATAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFEN---DDSAALAISVGP-PPTHKI   79 (153)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSS---SSEEEEEEESCC-HHHHHH
T ss_pred             CcCCCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcc---cccccccccchh-hhHHHH
Confidence            5899999999 999999999999995 444 455699999999999999999999876   899999999885 455555


Q ss_pred             hhhcCCccccccC--chhHHHHHHHcCCC------ceeeEEEECCCCcEEecC
Q 018266          224 NHSIMPWLAIPYE--DRARQDLCRIFNIK------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       224 ~~~~~~~~~~~~~--~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~~  268 (358)
                      +....++ .+|..  .+....+++.||+.      ..|+++|||++|+|++.+
T Consensus        80 ~~~~~~~-~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~  131 (153)
T d1xvwa1          80 WATQSGF-TFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAE  131 (153)
T ss_dssp             HHHHHTC-CSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEE
T ss_pred             Hhhhhcc-ceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEE
Confidence            6554432 23322  23456789999973      245799999999998763

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.70  E-value=2.1e-17  Score=136.42  Aligned_cols=119  Identities=17%  Similarity=0.223  Sum_probs=100.1

Q ss_pred             hhhhccCCcee-c-CCC--ceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL-S-RDH--RKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~-~~g--~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      ++|+++|+|.+ . .+|  ..+++++++||+++|+|| +.||+.|..+++.|++.+++|.+   .+++|++|+.|...  
T Consensus         2 lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~---~~~~v~gIS~Ds~~sh   78 (186)
T d1n8ja_           2 LINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK---LGVDVYSVSTDTHFTH   78 (186)
T ss_dssp             CTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHH---TTEEEEEEESSCHHHH
T ss_pred             CCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccc---ccEEEEeccccCHHHH
Confidence            68999999997 2 355  468899999999999999 78888899999999999999987   89999999998643  


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ..|.+.......+.+|...|....++++||+.      ..|++++||++|+|++.
T Consensus        79 ~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~  133 (186)
T d1n8ja_          79 KAWHSSSETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAI  133 (186)
T ss_dssp             HHHHHHCTTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HHHhccccccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEE
Confidence            45555544444577888899999999999983      46889999999999876

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.69  E-value=1.4e-17  Score=134.39  Aligned_cols=116  Identities=18%  Similarity=0.190  Sum_probs=95.1

Q ss_pred             hhhccCCcee-cCCCceeeecccC--CcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELA--GKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~--~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~  222 (358)
                      +|.++|+|++ +.+|+.++++++.  +++|+++|| +.|||+|..+++.|.+.+++|+    .+..+++|+.| +.+...
T Consensus         7 vG~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~----~~~~~~~is~d-~~~~~~   81 (156)
T d2a4va1           7 IGDPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELK----EYAAVFGLSAD-SVTSQK   81 (156)
T ss_dssp             TTCBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHT----TTCEEEEEESC-CHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHh----hccceeeeccc-hhhhHH
Confidence            6999999999 9999999999984  567888877 8999999999999999999997    45678999988 556666


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCCceee-----EEEECCCCcEEecC
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIKGIPA-----LVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~-----~~lid~~G~v~~~~  268 (358)
                      ++...+. +.+|+..|....++++||+...|.     .++|+.+|+++.+.
T Consensus        82 ~f~~~~~-l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~~dg~i~~~~  131 (156)
T d2a4va1          82 KFQSKQN-LPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKR  131 (156)
T ss_dssp             HHHHHHT-CSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEEETTEEEEEE
T ss_pred             hhhcccC-ccceeccchHHHHHHHcCCCccccCCeeEEEEEEECCeEEEEE
Confidence            6666555 467888888899999999865552     44555899998873

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.69  E-value=9.4e-17  Score=136.96  Aligned_cols=118  Identities=13%  Similarity=0.214  Sum_probs=99.6

Q ss_pred             hhhhccCCcee-cCCCceeeeccc---CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--H
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSEL---AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--H  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~---~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~  218 (358)
                      ++|.++|+|++ +.+| .+.+++.   +||+++|+|| +.||+.|..+++.|.+++++|++   .+++|++|++|..  +
T Consensus         2 lIGd~aPdF~l~t~~G-~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~---~g~~vigiS~Ds~~sh   77 (237)
T d2zcta1           2 LIGERFPEMEVTTDHG-VIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQR---LGVDLIGLSVDSVFSH   77 (237)
T ss_dssp             CTTSBCCCEEEEETTE-EEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHH
T ss_pred             CCCCCCCCeEEEcCCC-CEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhcc---CCcceeeccCCcHHHH
Confidence            57999999999 7777 4666664   7899999888 99999999999999999999997   8999999999973  3


Q ss_pred             HHHHHhhhc--CCccccccCchhHHHHHHHcCC-------CceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSI--MPWLAIPYEDRARQDLCRIFNI-------KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~v-------~~~P~~~lid~~G~v~~~  267 (358)
                      ..|.+....  ...+.+|...|....+++.||+       ...|+++|||++|+|+..
T Consensus        78 ~~w~~~~~~~~~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~  135 (237)
T d2zcta1          78 IKWKEWIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTM  135 (237)
T ss_dssp             HHHHHHHHHHHCCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEE
T ss_pred             HHHhhhhhhhcccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEE
Confidence            556655442  3457788888999999999998       468999999999999876

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=6.1e-17  Score=131.67  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=92.6

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHh
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLN  224 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~  224 (358)
                      +|.++|+|++ +.+|+.++|++++||+++|.|| +.||++|..+++.|.+++.++     .++.+++|+.|. .....++
T Consensus        20 vG~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d~-~~~~~~~   93 (164)
T d1qxha_          20 AGSKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEI-----DNTVVLCISADL-PFAQSRF   93 (164)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTS-----TTEEEEEEESSC-HHHHTTC
T ss_pred             CCCCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhh-----ccceeeeEEcCC-HHHHHHH
Confidence            6999999999 9999999999999999999888 779999999999999887765     468999999984 4445555


Q ss_pred             hhcCCc-cccccCchhHHHHHHHcCCC---------ceeeEEEECCCCcEEecC
Q 018266          225 HSIMPW-LAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       225 ~~~~~~-~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~  268 (358)
                      ...+.. ..+....+....+.+.||+.         ..|+++|||++|+|++..
T Consensus        94 ~~~~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~  147 (164)
T d1qxha_          94 CGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQ  147 (164)
T ss_dssp             CSSTTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEE
T ss_pred             HHHhCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEE
Confidence            554431 22233445678899999973         247899999999999873

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=9.3e-17  Score=131.77  Aligned_cols=123  Identities=20%  Similarity=0.338  Sum_probs=91.8

Q ss_pred             hHhhhhccCCcee-cCCCceeeecccCCcEEEEEEeccCCc-ccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---CH
Q 018266          144 EQLLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFGAHWCP-PCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---DH  218 (358)
Q Consensus       144 ~~~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~-~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~~  218 (358)
                      ...++.++|+|++ +.+|+.+++++++||++||+||.+||+ .|...++.|.++++++.+ .+.++.+++|++|.   ++
T Consensus         4 ~~p~~~~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~-~~~~v~~v~isiDp~~Dtp   82 (172)
T d1xzoa1           4 KDPLNYEVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRIISFSVDPENDKP   82 (172)
T ss_dssp             CSCCCEECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHH-TTCCCEEEEEESCTTTCCH
T ss_pred             cCCCCCcCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcc-ccccccccccccccccchH
Confidence            3446778999999 999999999999999999999999997 599999999999999975 45679999999985   34


Q ss_pred             HHHHHhhhcCC-----ccccccCch-h-HHHHHHHcCCC-----------ceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMP-----WLAIPYEDR-A-RQDLCRIFNIK-----------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~-----~~~~~~~~~-~-~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~  267 (358)
                      +...++...++     |..+..... . .....+.|++.           -.|.++|||++|+|+..
T Consensus        83 ~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~  149 (172)
T d1xzoa1          83 KQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD  149 (172)
T ss_dssp             HHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred             HHHHHHHHHhccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEE
Confidence            56666665443     322222111 1 12233445432           23679999999999865

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.66  E-value=7.6e-17  Score=128.16  Aligned_cols=95  Identities=28%  Similarity=0.592  Sum_probs=78.7

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccc--
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLI--  104 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~--  104 (358)
                      +++.+|. |++++++||+|+|+|||+||+||+.++|.|.++++++++. .+++++.|+.|.+.+.+.++..+.....+  
T Consensus        13 ~l~~~~~~v~ls~l~GK~vll~FwAtWC~pC~~~~p~L~~l~~~~~~~-~~~~vi~vs~D~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1i5ga_          13 VLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK-KNFEVMLISWDESAEDFKDYYAKMPWLALPF   91 (144)
T ss_dssp             EEETTEEEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             hccCCCCEeeHHHcCCCEEEEEEEecCCchHhhhhHhHHHHHHHHHhc-cCcEEEEEeccccHHHHHHHHHhCCCCceee
Confidence            4556788 9999999999999999999999999999999999999764 25999999999999999998888665322  


Q ss_pred             ccc-c-ceeeeccccCCCCcc
Q 018266          105 EED-L-IGLIEDYGADAYPFT  123 (358)
Q Consensus       105 ~~~-~-~~l~~~~gi~~~P~~  123 (358)
                      .+. + ..+.+.|+|.++|+.
T Consensus        92 ~d~~~~~~l~~~y~v~~iPt~  112 (144)
T d1i5ga_          92 EDRKGMEFLTTGFDVKSIPTL  112 (144)
T ss_dssp             TCHHHHHHHHHHTTCCSSSEE
T ss_pred             EChHHHHHHHHHCCCCCcCEE
Confidence            222 2 347788999999964

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.64  E-value=3.9e-16  Score=127.09  Aligned_cols=116  Identities=18%  Similarity=0.139  Sum_probs=85.4

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      -+|.++|+|++ +.+|+.+++++++||++||+|| +.|||.|..+++.|++.+++      .+++|++|+.|.. ....+
T Consensus        18 ~iG~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~~------~g~~vv~Is~d~~-~~~~~   90 (166)
T d1xvqa_          18 AVGSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDLP-FAQKR   90 (166)
T ss_dssp             CTTSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSCH-HHHTT
T ss_pred             CCcCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhccc------ccccccccccchH-HHHHH
Confidence            46999999999 9999999999999999999999 55888899998887665443      5678999999853 44555


Q ss_pred             hhhcCCccccccCchhHHHHHHHcCCC---------ceeeEEEECCCCcEEecC
Q 018266          224 NHSIMPWLAIPYEDRARQDLCRIFNIK---------GIPALVLIGPDGKTISTN  268 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~l~~~~~v~---------~~P~~~lid~~G~v~~~~  268 (358)
                      +...+.........+....+.+.|++.         ..|+++|||++|+|++..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~  144 (166)
T d1xvqa_          91 FCGAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTE  144 (166)
T ss_dssp             CC------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEE
T ss_pred             HHHHhCCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEE
Confidence            555444333333344456677788763         246899999999999873

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=7.7e-16  Score=128.14  Aligned_cols=119  Identities=16%  Similarity=0.209  Sum_probs=100.3

Q ss_pred             hhhhccCCcee----cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--
Q 018266          146 LLAIEGRDYVL----SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--  218 (358)
Q Consensus       146 ~~~~~~p~f~l----~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--  218 (358)
                      -+|.++|+|++    +.+++.+++++++||+++|+|| +.||+.|..++..|.+.+++|++   .+++|++|+.|...  
T Consensus         6 ~VG~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~---~g~~vigIS~D~~~~~   82 (197)
T d1qmva_           6 RIGKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRK---LGCEVLGVSVDSQFTH   82 (197)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHH
T ss_pred             cCCCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhcc---CCcEEEEEecCCHHHH
Confidence            37999999986    4567789999999999999999 89999999999999999999987   89999999999643  


Q ss_pred             HHHHHhhhc---CCccccccCchhHHHHHHHcCCC------ceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSI---MPWLAIPYEDRARQDLCRIFNIK------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~------~~P~~~lid~~G~v~~~  267 (358)
                      ..|.+....   ...+.+|+..|....+++.||+.      ..|++++||++|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~  140 (197)
T d1qmva_          83 LAWINTPRKEGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQI  140 (197)
T ss_dssp             HHHHTSCGGGTCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred             HhhhcchhhhcCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEE
Confidence            344433322   22467888999999999999984      47899999999999876

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=99.63  E-value=4e-16  Score=124.07  Aligned_cols=95  Identities=33%  Similarity=0.632  Sum_probs=75.3

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC-cccc
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG-TLIE  105 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~-~~~~  105 (358)
                      +...+|. |+|++++||+|+|+|||+||++|+..+|.|.++++++... .+++++.|+.|.+.+.+.++...... .+..
T Consensus        13 ~~~~~~~~v~l~~~~GK~vvl~FwatwC~~C~~~~p~l~~l~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~   91 (144)
T d1o73a_          13 NLLSKSGEVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEKHHVA-KNFEVVLISWDENESDFHDYYGKMPWLALPF   91 (144)
T ss_dssp             CBBCTTSCBCSGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTT-TTEEEEEEECCSSHHHHHHHHTTCSSEECCT
T ss_pred             eeccCCCEEeHHHhCCCEEEEEeChhhCccchhhhHHHHHHHHHHhhc-cCeEEEEEecchhHHHHHHHHHhccccceee
Confidence            4455566 9999999999999999999999999999999999999543 24999999999988888888776544 2211


Q ss_pred             -cc--cceeeeccccCCCCcc
Q 018266          106 -ED--LIGLIEDYGADAYPFT  123 (358)
Q Consensus       106 -~~--~~~l~~~~gi~~~P~~  123 (358)
                       ..  ...+.+.|++.++|++
T Consensus        92 ~~~~~~~~l~~~y~v~~~Pt~  112 (144)
T d1o73a_          92 DQRSTVSELGKTFGVESIPTL  112 (144)
T ss_dssp             TCHHHHHHHHHHHTCCSSSEE
T ss_pred             eccchHHHHHHHcCCCcCCEE
Confidence             11  2347788899888864

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.63  E-value=6.5e-16  Score=125.38  Aligned_cols=115  Identities=19%  Similarity=0.163  Sum_probs=86.9

Q ss_pred             hhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HHHH
Q 018266          147 LAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KEFD  222 (358)
Q Consensus       147 ~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~~~  222 (358)
                      +|.++|+|.+ +.+|+.+++++++||+++|.|| +.|||.|..+++.|.+.++++     .++.+++|+.|...  ..|.
T Consensus        18 vG~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~-----~~~~vv~Is~d~~~~~~~~~   92 (163)
T d1psqa_          18 VGDKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGL-----DNTVVLTVSMDLPFAQKRWC   92 (163)
T ss_dssp             TTSBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTC-----TTEEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhh-----cccceEEEEeccHHHHHHHH
Confidence            6999999999 9999999999999999999998 789999999999988776666     45889999988542  2333


Q ss_pred             HhhhcCCccccccCchhHHHHHHHcCCCc------eeeEEEECCCCcEEecC
Q 018266          223 LNHSIMPWLAIPYEDRARQDLCRIFNIKG------IPALVLIGPDGKTISTN  268 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~l~~~~~v~~------~P~~~lid~~G~v~~~~  268 (358)
                      .......  .....++....+.+.||+..      .|+++|||++|+|++.+
T Consensus        93 ~~~~~~~--~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~  142 (163)
T d1psqa_          93 GAEGLDN--AIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVE  142 (163)
T ss_dssp             HHHTCTT--SEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEE
T ss_pred             HHcCCcc--eeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEE
Confidence            3332211  11223334567889998742      24689999999999874

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.61  E-value=6.5e-16  Score=121.26  Aligned_cols=96  Identities=20%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD  100 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~  100 (358)
                      +..+| +.+.+|+ +++++++||+++|.|||+||++|+..+|.+.++++++.    ++.++.|+.+.+.....++..+..
T Consensus         3 ~~~~f~~~~~~G~~~~l~~~~Gk~vll~F~a~wC~~C~~~~p~l~~~~~~~~----~v~~v~v~~~~~~~~~~~~~~~~~   78 (134)
T d1lu4a_           3 ERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQVAAANP----AVTFVGIATRADVGAMQSFVSKYN   78 (134)
T ss_dssp             GGGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT----TSEEEEEECSSCHHHHHHHHHHHT
T ss_pred             CCCcceeECCCCCEEcHHHhCCCEEEEEEeecccCCceecchhHHHHhhhhc----cccccccccccchhhhhhhhhhhc
Confidence            44567 8999999 99999999999999999999999999999999988653    378999999888877777766633


Q ss_pred             C--cccccccceeeeccccCCCCc
Q 018266          101 G--TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       101 ~--~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      .  .++.+....+++.||+.++|+
T Consensus        79 ~~~p~~~d~~~~~~~~~~v~~~P~  102 (134)
T d1lu4a_          79 LNFTNLNDADGVIWARYNVPWQPA  102 (134)
T ss_dssp             CCSEEEECTTSHHHHHTTCCSSSE
T ss_pred             cccceeeCchHHHHHHcCCCcCCE
Confidence            3  445555567888888888885

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=1.7e-15  Score=114.73  Aligned_cols=75  Identities=27%  Similarity=0.606  Sum_probs=65.4

Q ss_pred             ecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHH
Q 018266          165 VSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLC  244 (358)
Q Consensus       165 l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  244 (358)
                      +.+..||+|+|+||++||++|+.+.|.+++++++++    +.+.++.|..|..                       ..++
T Consensus        20 l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~----~~~~~~~i~~d~~-----------------------~~l~   72 (111)
T d1xwaa_          20 LTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFA----DNVVVLKVDVDEC-----------------------EDIA   72 (111)
T ss_dssp             HHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------HHHH
T ss_pred             HHhcCCCEEEEEEECCcccCccccchhHHHHhhhcc----cceEEEEEEeecC-----------------------cchh
Confidence            444568999999999999999999999999999987    5677788887764                       5789


Q ss_pred             HHcCCCceeeEEEECCCCcEEec
Q 018266          245 RIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       245 ~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++|+|.++||++++ ++|+.+.+
T Consensus        73 ~~~~V~~~Pt~~~~-~~G~~v~~   94 (111)
T d1xwaa_          73 MEYNISSMPTFVFL-KNGVKVEE   94 (111)
T ss_dssp             HHTTCCSSSEEEEE-ETTEEEEE
T ss_pred             hcCCCccccEEEEE-ECCEEEEE
Confidence            99999999999999 78988876

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.61  E-value=9e-16  Score=115.11  Aligned_cols=71  Identities=27%  Similarity=0.508  Sum_probs=63.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.+.+++.+++    +++.++.|++|..                       ..++++|+
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~vd~~~~-----------------------~~~~~~~~   68 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHA----DKVTVAKLNVDEN-----------------------PETTSQFG   68 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHT----TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcC----CceEEEEEECCCC-----------------------cccHHHCC
Confidence            35899999999999999999999999999997    5688888888865                       68899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+.+.+
T Consensus        69 V~~~Pt~~~~-~~G~~~~~   86 (105)
T d1nw2a_          69 IMSIPTLILF-KGGEPVKQ   86 (105)
T ss_dssp             CCBSSEEEEE-ETTEEEEE
T ss_pred             cceeeEEEEE-ECCEEEEE
Confidence            9999999999 78888876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.60  E-value=2.5e-15  Score=113.03  Aligned_cols=89  Identities=27%  Similarity=0.477  Sum_probs=73.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|+|||+||++|+.+.|.+.++..++.    .++.++.|++|..                       ..++++|+
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~   70 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYK----DKLKCVKLNTDES-----------------------PNVASEYG   70 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHHT
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhc----ccceEEEEecccc-----------------------hhHHHHhc
Confidence            36899999999999999999999999988887    6678888988865                       57999999


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhc
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG  299 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  299 (358)
                      |+++||++++ ++|+.+.+       ..|...       .++|.+.+++.+
T Consensus        71 V~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~~L  106 (107)
T d1dbya_          71 IRSIPTIMVF-KGGKKCET-------IIGAVP-------KATIVQTVEKYL  106 (107)
T ss_dssp             CCSSCEEEEE-SSSSEEEE-------EESCCC-------HHHHHHHHHHHC
T ss_pred             ccceEEEEEE-ECCeEEEE-------EeCCCC-------HHHHHHHHHHhh
Confidence            9999999999 68988877       455443       456666666543

>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: C1-like domain
domain: Pdi-like hypothetical protein At1g60420
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=2.8e-16  Score=111.97  Aligned_cols=79  Identities=39%  Similarity=0.812  Sum_probs=74.8

Q ss_pred             CCCCCCCchhhHHHHHHHHHHhcCCCCCccccCCC-ceeeeeecCCceeecCcCCCCcceEEEcCCCCCCCCcccccCcc
Q 018266          277 GAKAFPFTESRIAEIETALKKEGDALPREVKDVKH-EHELKLDMAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN  355 (358)
Q Consensus       277 g~~~~p~~~~~~~~L~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~C~~C~e~g~~~~~~~~~~~~~~~~~~~~~~~  355 (358)
                      |+.+||+|+.+..+++..+.++...+|..+.+..| .|.|.+.....++|+.|++.+.+|.|+|..|||+||..||+.++
T Consensus         1 ~~~~~~~t~~~~~e~~~~~he~c~~~P~~I~Hp~Hp~H~L~L~~~~~~~C~~C~~~~~g~~Y~C~~C~f~LH~~CA~~P~   80 (89)
T d1v5na_           1 GSSGSSGTEERLKEIEAKYDEIAKDWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCALNED   80 (89)
T ss_dssp             CCCCCCCCSSCCSHHHHHHHHHTSSSCSEECCSTTTTSCEEEECCSSCCCTTTSCCCCSCEEECTTTCCCCCHHHHHCSS
T ss_pred             CCccCCchHHHHHHHHhhhhHHHhcCCCeecCCCCCCCCeEEecCCCCEeCCCCCCcCCcEeEeccCCCEecHHHcCCCc
Confidence            56789999999999999999999999999999999 59999998889999999999999999999999999999999764

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.8e-15  Score=127.86  Aligned_cols=118  Identities=17%  Similarity=0.258  Sum_probs=99.0

Q ss_pred             hhhhccCCcee-cCCCceeeecccCC-cEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKE  220 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~-k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~  220 (358)
                      ++|.++|+|++ +.+|+ ++++++.| |++||+|| +.||+.|..++..|++.++++.+   .+++|++|++|..  +..
T Consensus         2 ~VGd~APdF~l~~~~G~-v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~---~g~~v~giS~Ds~~sh~~   77 (220)
T d1prxa_           2 LLGDVAPNFEANTTVGR-IRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAK---RNVKLIALSIDSVEDHLA   77 (220)
T ss_dssp             CTTCBCCCCEEEETTEE-EEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCCcEeecCCCC-EEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhc---ccceeeccccccccchhh
Confidence            47999999999 77775 99999987 78888888 68999999999999999999987   8999999999974  345


Q ss_pred             HHHhhhc------CCccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018266          221 FDLNHSI------MPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~~------~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~  267 (358)
                      |.+....      ..-+.+|+..|....+++.||+.            ..++++|||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~  142 (220)
T d1prxa_          78 WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLS  142 (220)
T ss_dssp             HHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEE
T ss_pred             hhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEE
Confidence            5554431      12367888899999999999984            46889999999999876

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=8.1e-16  Score=120.70  Aligned_cols=96  Identities=18%  Similarity=0.254  Sum_probs=76.8

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCC-
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSD-  100 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~-  100 (358)
                      .++| +.+.+|+ +++++++||+++|.|||+||++|++.+|.+.++++++++    ..++.|+.+.+.....++..... 
T Consensus         5 ~~df~~~~~~G~~~~l~~~~Gk~vll~fwa~wC~~C~~~~p~l~~l~~~~~~----~~~v~v~~~d~~~~~~~~~~~~~~   80 (134)
T d1zzoa1           5 QLQFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPE----VTFVGVAGLDQVPAMQEFVNKYPV   80 (134)
T ss_dssp             GGCCEEEBTTSCEEEGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSCHHHHHHHHHHTTC
T ss_pred             CcceeEEcCCCCEEeHHHhCCCEEEEEecccccCcccccchhhHHHHhhhcc----cccccccccccchhHHHHHHhcCC
Confidence            3566 8999999 999999999999999999999999999999999998754    55888888777777776666633 


Q ss_pred             --CcccccccceeeeccccCCCCcc
Q 018266          101 --GTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       101 --~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                        ..++.+...++.+.||+.++|++
T Consensus        81 ~~~~~l~D~~~~~~~~~~v~~~P~~  105 (134)
T d1zzoa1          81 KTFTQLADTDGSVWANFGVTQQPAY  105 (134)
T ss_dssp             TTSEEEECTTCHHHHHTTCCSSSEE
T ss_pred             cceeEEeeccchHHHhcCCCccCeE
Confidence              24444455577788888888853

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=4.2e-15  Score=111.94  Aligned_cols=88  Identities=26%  Similarity=0.483  Sum_probs=71.3

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +|+|+|+|||+||++|+.+.|.+.+++.++.    .++.++.+.+|..                       ..++++|+|
T Consensus        20 ~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~v   72 (108)
T d2trxa_          20 DGAILVDFWAEWCGPCKMIAPILDEIADEYQ----GKLTVAKLNIDQN-----------------------PGTAPKYGI   72 (108)
T ss_dssp             SSEEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTEEEEEEETTTC-----------------------TTHHHHTTC
T ss_pred             CCcEEEEEECCCCCCccccCcHHHHHHHHhh----cceeeeeccccch-----------------------hhHHHHhCC
Confidence            5899999999999999999999999988876    6788888888764                       578999999


Q ss_pred             CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhc
Q 018266          250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG  299 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  299 (358)
                      .++||++++ ++|+.+.+       ..|...       .++|.+.+++.+
T Consensus        73 ~~~PT~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~~L  107 (108)
T d2trxa_          73 RGIPTLLLF-KNGEVAAT-------KVGALS-------KGQLKEFLDANL  107 (108)
T ss_dssp             CSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHHH
T ss_pred             CcEEEEEEE-ECCEEEEE-------EeCCCC-------HHHHHHHHHHhc
Confidence            999999999 78988876       455433       455666565543

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.58  E-value=4.6e-15  Score=120.33  Aligned_cols=116  Identities=11%  Similarity=0.087  Sum_probs=91.2

Q ss_pred             hhhhccCCcee-cCCCceeeecccCCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHH
Q 018266          146 LLAIEGRDYVL-SRDHRKITVSELAGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDL  223 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g~~~~l~~~~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~  223 (358)
                      .+|.++|+|++ +.+|+.++|++++||+++|+|| +.||+.|..+++.|++.+++++     +..|++|+.|. .....+
T Consensus        17 ~vG~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~-----~~~vi~iS~d~-~~~~~~   90 (164)
T d1q98a_          17 QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS-----NTIVLCISADL-PFAQAR   90 (164)
T ss_dssp             CTTCBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST-----TEEEEEEESSC-HHHHTT
T ss_pred             CCCCCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc-----cceEEeecCCc-HHHHHH
Confidence            36999999999 8999999999999999999999 5577789999999999999884     47899999985 344455


Q ss_pred             hhhcCCcccc-ccCchhHHHHHHHcCCC-------c--eeeEEEECCCCcEEec
Q 018266          224 NHSIMPWLAI-PYEDRARQDLCRIFNIK-------G--IPALVLIGPDGKTIST  267 (358)
Q Consensus       224 ~~~~~~~~~~-~~~~~~~~~l~~~~~v~-------~--~P~~~lid~~G~v~~~  267 (358)
                      +...+....+ .+..+....+.+.|++.       +  .|+++|||++|+|++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~  144 (164)
T d1q98a_          91 FCGAEGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHS  144 (164)
T ss_dssp             CTTTTTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEE
T ss_pred             HHHHhCCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEE
Confidence            5554443222 23333456788888863       2  3889999999999987

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.57  E-value=5.1e-15  Score=110.70  Aligned_cols=70  Identities=23%  Similarity=0.492  Sum_probs=62.4

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +|+++|+||++||++|+.+.|.+.++.+++.    ..+.++.|..|..                       ..++++|+|
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~----~~~~~~~v~~d~~-----------------------~~l~~~~~V   69 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYS----GKIAVYKLNTDEA-----------------------PGIATQYNI   69 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTCEEEEEETTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhc----CccceeEEecccc-----------------------hhhhhhcce
Confidence            5789999999999999999999999999987    5667888888864                       689999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      +++||++++ ++|+.+.+
T Consensus        70 ~~~Pt~~~~-~~G~~v~~   86 (104)
T d1fb6a_          70 RSIPTVLFF-KNGERKES   86 (104)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             eeeeEEEEE-EcCeEEEE
Confidence            999999999 78988876

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.57  E-value=7.1e-15  Score=110.69  Aligned_cols=87  Identities=21%  Similarity=0.455  Sum_probs=71.1

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|.||++||++|+.+.|.|.++++++.    +.+.++.|.+|..                       ..++++|+|
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~----~~~~~~~vd~d~~-----------------------~~l~~~~~I   72 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYS----DRLKVVKLEIDPN-----------------------PTTVKKYKV   72 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTT----TTCEEEEEESTTC-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcC----Ccceeceeccccc-----------------------HHHHHHhcc
Confidence            4799999999999999999999999999887    5688888888864                       689999999


Q ss_pred             CceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          250 KGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      +++||++++ ++|+.+.+       ..|...       .++|.+.+++.
T Consensus        73 ~~~Pt~~~~-~~g~~v~~-------~~G~~~-------~~~l~~~i~~~  106 (108)
T d1thxa_          73 EGVPALRLV-KGEQILDS-------TEGVIS-------KDKLLSFLDTH  106 (108)
T ss_dssp             CSSSEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHH
T ss_pred             cCCCEEEEE-ECCEEEEE-------EeCCCC-------HHHHHHHHHHh
Confidence            999999999 58888766       345433       44565556554

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.56  E-value=2.5e-15  Score=119.36  Aligned_cols=95  Identities=32%  Similarity=0.642  Sum_probs=79.0

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCc----
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGT----  102 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~----  102 (358)
                      +++.+|. |++++++||+|+|+|||+||++|+..+|.+.++++++.... ++.+++|+.|.+.+.+..++......    
T Consensus        11 ~~~~~g~~v~l~~l~GK~vll~Fwa~wC~~C~~~~~~l~~l~~~~~~~~-~~~~v~is~d~~~~~~~~~~~~~~~~~~~~   89 (144)
T d1o8xa_          11 KLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESK-NFEVVFCTWDEEEDGFAGYFAKMPWLAVPF   89 (144)
T ss_dssp             EEEETTEEEEGGGGTTCEEEEEEECTTCHHHHHHHHHHHHHHHHHTTTT-TEEEEEEECCCSHHHHHHHHTTCSSEECCG
T ss_pred             eEcCCCCEEeHHHhCCCEEEEEeccccccccccccchhHHhhhhccccc-ccccccccccccHHHHHHHHhhccccceee
Confidence            6677788 99999999999999999999999999999999999996652 49999999999888888887764441    


Q ss_pred             ccccccceeeeccccCCCCcc
Q 018266          103 LIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       103 ~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      ...+....+.+.|++.++|++
T Consensus        90 ~~~d~~~~l~~~y~v~~~Pt~  110 (144)
T d1o8xa_          90 AQSEAVQKLSKHFNVESIPTL  110 (144)
T ss_dssp             GGHHHHHHHHHHTTCCSSSEE
T ss_pred             ecccchhhHHHHcCCCcCCEE
Confidence            222334578899999999964

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.56  E-value=1.1e-14  Score=118.67  Aligned_cols=115  Identities=17%  Similarity=0.250  Sum_probs=94.0

Q ss_pred             ccCCcee-----cCCCceeeecccCC-cEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH--HH
Q 018266          150 EGRDYVL-----SRDHRKITVSELAG-KTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH--KE  220 (358)
Q Consensus       150 ~~p~f~l-----~~~g~~~~l~~~~~-k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~--~~  220 (358)
                      ++|+|.+     +.+++++++++++| |+|||+|| +.||+.|..++..|++.+++|++   .+++|++|+.|...  ..
T Consensus         1 kAPdF~l~~~~gd~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~---~g~~vigIS~D~~~~~~~   77 (170)
T d2h01a1           1 QAPSFKAEAVFGDNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKE---RNVELLGCSVDSKFTHLA   77 (170)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHH---TTEEEEEEESSCHHHHHH
T ss_pred             CCCCeEeeeecCCCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhc---CCeeEecccCCcHHHHHh
Confidence            5899998     24556899999998 78999998 89999999999999999999997   89999999999643  34


Q ss_pred             HHHhhhc---CCccccccCchhHHHHHHHcCCC-----ceeeEEEECCCCcEEec
Q 018266          221 FDLNHSI---MPWLAIPYEDRARQDLCRIFNIK-----GIPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~~---~~~~~~~~~~~~~~~l~~~~~v~-----~~P~~~lid~~G~v~~~  267 (358)
                      |.+....   .....+|...|....+.+.||+.     ..|++++||++|+|++.
T Consensus        78 ~~~~~~~~~~~~~~~f~llsD~~~~~~~~ygv~~~~~~~~R~tfiId~~G~I~~~  132 (170)
T d2h01a1          78 WKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFNESVALRAFVLIDKQGVVQHL  132 (170)
T ss_dssp             HHTSCGGGTCCCSCSSEEEECTTSHHHHHTTCEETTTEECCEEEEECTTSBEEEE
T ss_pred             HhhhhhhhccccccCCceeEcCccHHHHHhCCccccccceeeeEEEcCCCeEEEE
Confidence            4433322   22356777888899999999983     35799999999999876

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.55  E-value=1e-14  Score=114.66  Aligned_cols=97  Identities=24%  Similarity=0.515  Sum_probs=81.4

Q ss_pred             Cccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC
Q 018266           24 GVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG  101 (358)
Q Consensus        24 ~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~  101 (358)
                      .++| +.+.+|+ +++++++||+++|+||++||++|+..+|.+.++++++.+.+  +.++.|+++.+...++++..+...
T Consensus         5 ~P~f~l~~~~G~~~~l~~~~gk~~li~f~~~~C~~C~~~~~~l~~~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~~~~~   82 (137)
T d1st9a_           5 APNFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEFPYMANQYKHFKSQG--VEIVAVNVGESKIAVHNFMKSYGV   82 (137)
T ss_dssp             CCCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHGGGT--EEEEEEEESCCHHHHHHHHHHTTC
T ss_pred             CCCeEEECCCcCEEeHHHhCCCEEEEEEeeccccceeecccccccccccccccc--cccccccccchhhhHHHHHHHcCC
Confidence            3566 8899999 99999999999999999999999999999999999998876  999999999888888888766333


Q ss_pred             --cccccccceeeeccccCCCCc
Q 018266          102 --TLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       102 --~~~~~~~~~l~~~~gi~~~P~  122 (358)
                        .++.+...++++.|++.++|+
T Consensus        83 ~~~~~~d~~~~~~~~~~v~~~P~  105 (137)
T d1st9a_          83 NFPVVLDTDRQVLDAYDVSPLPT  105 (137)
T ss_dssp             CSCEEEETTSHHHHHTTCCSSCE
T ss_pred             Cccccccccchhhhhhhccccce
Confidence              344445556778888877774

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=99.54  E-value=5.5e-15  Score=122.43  Aligned_cols=99  Identities=17%  Similarity=0.175  Sum_probs=79.7

Q ss_pred             cccCccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-------ChhH
Q 018266           21 ASEGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-------DENG   91 (358)
Q Consensus        21 ~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-------~~~~   91 (358)
                      ..+.++| |.+.+|+ ++|++++||+|+|.|||+||++|+..+|.+.++++++++.   +.++.|+...       +.+.
T Consensus         9 G~~aPdF~l~d~~G~~~~Lsd~kGk~vvl~FwatwCp~C~~~~p~l~~l~~~y~~~---v~~v~i~snd~~~~~~~~~e~   85 (187)
T d2cvba1           9 ESPLIDAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGK---VAFVGINANDYEKYPEDAPEK   85 (187)
T ss_dssp             TCBCCCCEEECTTSCEEEGGGCCSSEEEEEEECSSCHHHHTTHHHHHHHHHHTTTT---EEEEEEECCCTTTCGGGSHHH
T ss_pred             CCccCccEeecCCCCEEEHHHhCCCeEEEEEeCCCCccchhhhhhhhhhhhhcccc---ceeeeeeccccccccccchHH
Confidence            3455677 9999999 9999999999999999999999999999999999999764   7788887532       2345


Q ss_pred             HHHHHhhC--CCcccccccceeeeccccCCCCc
Q 018266           92 FEEHFKSS--DGTLIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus        92 ~~~~~~~~--~~~~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ++++....  ...++.+....+.+.|++...|.
T Consensus        86 ~~~~~~~~~~~~p~l~D~~~~~~~~~~v~~~P~  118 (187)
T d2cvba1          86 MAAFAEEHGIFFPYLLDETQEVAKAYRALRTPE  118 (187)
T ss_dssp             HHHHHHHHTCCSCEEECSSSHHHHHTTCCEESE
T ss_pred             HHHHHHHhCCcceeeechhhhhcccccccceee
Confidence            55555553  33556666778999999999995

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.54  E-value=1.4e-14  Score=109.62  Aligned_cols=88  Identities=22%  Similarity=0.389  Sum_probs=71.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|+||++||++|+.+.|.|.+++++++    .++.++.|++|..                       ..++++|+
T Consensus        23 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~   75 (112)
T d1ep7a_          23 EHKPIVVDFTATWCGPCKMIAPLFETLSNDYA----GKVIFLKVDVDAV-----------------------AAVAEAAG   75 (112)
T ss_dssp             HTCCEEEEEECTTCHHHHHHHHHHHHHHHHTT----TTSEEEEEETTTT-----------------------HHHHHHHT
T ss_pred             cCCeEEEEEEcCCcCCCcccchhhhhhhhccc----ceEEEEEeecccc-----------------------cccccccc
Confidence            46899999999999999999999999999986    5678888888764                       68999999


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhc
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEG  299 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~  299 (358)
                      |+++||++++ ++|+.+.+       +.|..        .++|.+.+++.+
T Consensus        76 v~~~Pt~~~~-~~G~~v~~-------~~G~~--------~~~l~~~i~k~~  110 (112)
T d1ep7a_          76 ITAMPTFHVY-KDGVKADD-------LVGAS--------QDKLKALVAKHA  110 (112)
T ss_dssp             CCBSSEEEEE-ETTEEEEE-------EESCC--------HHHHHHHHHHHH
T ss_pred             ccCCCEEEEE-ECCEEEEE-------EeCcC--------HHHHHHHHHHHh
Confidence            9999999999 78888876       34521        345666666554

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=9.1e-14  Score=111.81  Aligned_cols=115  Identities=18%  Similarity=0.348  Sum_probs=87.4

Q ss_pred             Ccee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcc-cCCceEEEEEeCCCC---HHHHHHhhh
Q 018266          153 DYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTT-ANHCFEVVLVSTDRD---HKEFDLNHS  226 (358)
Q Consensus       153 ~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~-~~~~~~vv~v~~d~~---~~~~~~~~~  226 (358)
                      ||++ +.+|+++++++++||++||+||++||+. |....+.+.++.+++... ....+.++.++.+..   .........
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVK   81 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCTTTCCHHHHHHHHH
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCCCcccHHHHHHHHh
Confidence            6888 9999999999999999999999999985 999999999999887642 124566667777643   333444433


Q ss_pred             --cCCccccccCchhHHHHHHHcCCCce---------------eeEEEECCCCcEEec
Q 018266          227 --IMPWLAIPYEDRARQDLCRIFNIKGI---------------PALVLIGPDGKTIST  267 (358)
Q Consensus       227 --~~~~~~~~~~~~~~~~l~~~~~v~~~---------------P~~~lid~~G~v~~~  267 (358)
                        ..+|..++........+...|++...               ++++|||++|+|+.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~  139 (160)
T d1wp0a1          82 EFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY  139 (160)
T ss_dssp             TTCTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEE
T ss_pred             hcCCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEE
Confidence              34566666665666678888886544               478999999999977

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.5e-14  Score=108.29  Aligned_cols=70  Identities=20%  Similarity=0.455  Sum_probs=60.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|+|||+||++|+.+.|.|.++.+++.+     +.++.|..|..                       ..++++|+
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~-----~~~~~vd~d~~-----------------------~~~~~~~~   70 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN-----VIFLEVDVDDC-----------------------QDVASECE   70 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT-----SEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc-----ceeeecccccC-----------------------HhHHHHcC
Confidence            458999999999999999999999999988853     45666766654                       67899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++ ++|+.+.+
T Consensus        71 V~~~Pt~~~~-~~G~~v~~   88 (105)
T d2ifqa1          71 VKCMPTFQFF-KKGQKVGE   88 (105)
T ss_dssp             CCBSSEEEEE-ETTEEEEE
T ss_pred             ceEEEEEEEE-ECCEEEEE
Confidence            9999999999 88998877

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.53  E-value=2.7e-14  Score=107.21  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=67.8

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      ...++.+++.||++||++|+.+.|.+.+++.+........+.++.|..+.                       ...++++
T Consensus        12 ~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~-----------------------~~~l~~~   68 (107)
T d1a8la2          12 NIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIE-----------------------YPEWADQ   68 (107)
T ss_dssp             TCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGG-----------------------CHHHHHH
T ss_pred             hcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccc-----------------------ccccccc
Confidence            34456777889999999999999999999876543233456666665554                       3689999


Q ss_pred             cCCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          247 FNIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      |+|.++||++++ ++|+.+.+       +.|...       .+++.+.+++.
T Consensus        69 ~~V~~vPTi~i~-~~G~~~~~-------~~G~~~-------~~~~~~~i~~a  105 (107)
T d1a8la2          69 YNVMAVPKIVIQ-VNGEDRVE-------FEGAYP-------EKMFLEKLLSA  105 (107)
T ss_dssp             TTCCSSCEEEEE-ETTEEEEE-------EESCCC-------HHHHHHHHHHH
T ss_pred             cccccceEEEEE-eCCeEEEE-------EECCCC-------HHHHHHHHHHh
Confidence            999999998766 88888776       456544       44555555443

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.53  E-value=2.5e-14  Score=108.68  Aligned_cols=70  Identities=21%  Similarity=0.502  Sum_probs=60.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++.+.++     ++.++.|..|..                       ..++++|+
T Consensus        27 ~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~-----~~~~~~vd~~~~-----------------------~~l~~~~~   78 (114)
T d1xfla_          27 SKTLVVVDFTASWCGPCRFIAPFFADLAKKLP-----NVLFLKVDTDEL-----------------------KSVASDWA   78 (114)
T ss_dssp             TTCEEEEEEECTTCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEEcCCCCCccccccchhhhccccc-----ccceeEEEeeec-----------------------eeeccccc
Confidence            46899999999999999999999999998885     356666666653                       68899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++ ++|+++.+
T Consensus        79 V~~~Pt~~~~-~~G~~v~~   96 (114)
T d1xfla_          79 IQAMPTFMFL-KEGKILDK   96 (114)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             eeeeEEEEEE-ECCEEEEE
Confidence            9999999999 89988877

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.2e-14  Score=107.54  Aligned_cols=70  Identities=16%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.+++++++     ++.++.|.+|..                       ..++++|+
T Consensus        20 ~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~-----~~~f~~vd~d~~-----------------------~~l~~~~~   71 (107)
T d1gh2a_          20 GSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYP-----QAVFLEVDVHQC-----------------------QGTAATNN   71 (107)
T ss_dssp             TTSCEEEEEECSSCHHHHHHHHHHHHHHHHCT-----TSEEEEEETTTS-----------------------HHHHHHTT
T ss_pred             CCCEEEEEEECCCCCCccccchhhhccccccc-----cccccccccccc-----------------------hhhhhhcC
Confidence            46899999999999999999999999999885     366777777754                       68899999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+.+.+
T Consensus        72 v~~~Pt~~~~-~~G~~v~~   89 (107)
T d1gh2a_          72 ISATPTFQFF-RNKVRIDQ   89 (107)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             ceeceEEEEE-ECCEEEEE
Confidence            9999999999 88888876

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.52  E-value=2.3e-14  Score=108.57  Aligned_cols=70  Identities=17%  Similarity=0.472  Sum_probs=61.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+|||+||++|+.+.|.|.++++++.     ++.++.|++|..                       ..+++.|+
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~-----~v~~~~vd~d~~-----------------------~~l~~~~~   76 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP-----TVKFAKVDADNN-----------------------SEIVSKCR   76 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT-----TSEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc-----cccccccccccc-----------------------hhhHHHcc
Confidence            35789999999999999999999999999884     478888888764                       68999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+.+.+
T Consensus        77 V~~~Pt~~~~-~~G~~v~~   94 (113)
T d1r26a_          77 VLQLPTFIIA-RSGKMLGH   94 (113)
T ss_dssp             CCSSSEEEEE-ETTEEEEE
T ss_pred             ccCCCEEEEE-ECCEEEEE
Confidence            9999999999 88988876

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.1e-14  Score=111.18  Aligned_cols=83  Identities=18%  Similarity=0.344  Sum_probs=61.1

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .+++.+||+++|+|||+||++|+.+.|.+....+....  ..++.++.+.++.+.                   +....+
T Consensus        16 ~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~-------------------~~~~~l   74 (117)
T d2fwha1          16 ALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKA--LADTVLLQANVTAND-------------------AQDVAL   74 (117)
T ss_dssp             HHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHH--TTTSEEEEEECTTCC-------------------HHHHHH
T ss_pred             HHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHh--ccceEEEecccccch-------------------hHHHHH
Confidence            34556799999999999999999999987433332221  134556666554332                   225789


Q ss_pred             HHHcCCCceeeEEEECCCCcEEec
Q 018266          244 CRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       244 ~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      +++|+|.++||++++|++|+++..
T Consensus        75 ~~~~~v~~~Pt~~~~~~~G~~~~~   98 (117)
T d2fwha1          75 LKHLNVLGLPTILFFDGQGQEHPQ   98 (117)
T ss_dssp             HHHTTCCSSSEEEEECTTSCBCGG
T ss_pred             HhhhehhhceEEEEEeCCCcEEec
Confidence            999999999999999999998753

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.51  E-value=2e-14  Score=109.08  Aligned_cols=70  Identities=24%  Similarity=0.594  Sum_probs=61.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|+||++||++|+.+.|.|.++.+++.     ++.++.|.+|..                       ..++++|+
T Consensus        25 ~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~-----~~~~~~vd~d~~-----------------------~~l~~~~~   76 (113)
T d1ti3a_          25 SQKLIVVDFTASWCPPCKMIAPIFAELAKKFP-----NVTFLKVDVDEL-----------------------KAVAEEWN   76 (113)
T ss_dssp             SSSEEEEEEECSSCHHHHHHHHHHHHHHHHCS-----SEEEEEEETTTC-----------------------HHHHHHHH
T ss_pred             CCCEEEEEEEcCccccchhhhhhhhhhhccCC-----CceEEeeeeecc-----------------------ccccccCe
Confidence            46899999999999999999999999998874     366777777754                       67999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++ ++|+.+.+
T Consensus        77 I~~~Pt~~~~-k~G~~v~~   94 (113)
T d1ti3a_          77 VEAMPTFIFL-KDGKLVDK   94 (113)
T ss_dssp             CSSTTEEEEE-ETTEEEEE
T ss_pred             ecccceEEEE-ECCEEEEE
Confidence            9999999999 69998877

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.51  E-value=2.8e-14  Score=107.94  Aligned_cols=71  Identities=14%  Similarity=0.434  Sum_probs=61.3

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+++|+||++||++|+.+.|.|.++++++.     ++.++.+.+|..                      ...++++|+
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~-----~v~~~~vd~~~~----------------------~~~l~~~~~   76 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYL-----DVIFLKLDCNQE----------------------NKTLAKELG   76 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCT-----TSEEEEEECSST----------------------THHHHHHHC
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhccccc-----cceeeccccccc----------------------chhhHhhee
Confidence            35899999999999999999999999999985     356777776643                      378999999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||++++ ++|+++.+
T Consensus        77 V~~~Pt~~~~-k~G~~v~~   94 (112)
T d1f9ma_          77 IRVVPTFKIL-KENSVVGE   94 (112)
T ss_dssp             CSSSSEEEEE-ETTEEEEE
T ss_pred             eccCCEEEEE-ECCEEEEE
Confidence            9999999999 79998877

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=99.50  E-value=1.4e-14  Score=114.80  Aligned_cols=95  Identities=13%  Similarity=0.219  Sum_probs=74.8

Q ss_pred             cccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-----ChhHHHHHHhhCC
Q 018266           27 FLLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-----DENGFEEHFKSSD  100 (358)
Q Consensus        27 ~l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-----~~~~~~~~~~~~~  100 (358)
                      .|++.+|+ ++|++++||+++|.|||+||++|+..+|.+.+++++++..+  +.++.++.+.     +.....+++....
T Consensus         7 ~l~~~~~~~~~l~~~~gk~vvl~F~a~wC~~C~~~~~~l~~l~~~~~~~~--~~~i~v~~~~~~~~~~~~~~~~~~~~~~   84 (143)
T d2fy6a1           7 TLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSS--ANLITVASPGFLHEKKDGDFQKWYAGLN   84 (143)
T ss_dssp             TCEETTSCBGGGGCCTTSCEEEEEECTTCHHHHTTHHHHHHHHHCGGGTT--SEEEEEECTTSTTCCCTTHHHHHHTTSC
T ss_pred             eeECCCCCEeeHHHhCCCEEEEEEECCCCccccccCcchhhhhhhhccCC--cEEEEEeeeecccccchhhhhhhhhhcC
Confidence            47889999 99999999999999999999999999999999999998876  8888888753     2234445544433


Q ss_pred             C---cccccccceeeeccccCCCCcc
Q 018266          101 G---TLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       101 ~---~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      +   .++.+...++++.||+.++|++
T Consensus        85 ~~~~~~~~D~~~~~~~~~~v~~~P~~  110 (143)
T d2fy6a1          85 YPKLPVVTDNGGTIAQSLNISVYPSW  110 (143)
T ss_dssp             CTTSCEEECTTCHHHHHTTCCSSSEE
T ss_pred             CcccccccccchHHHHHcCCCccCEE
Confidence            2   3445555677888888888853

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.4e-13  Score=111.43  Aligned_cols=71  Identities=13%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             Ccee-cCC-CceeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC-------CHHHHHH
Q 018266          153 DYVL-SRD-HRKITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR-------DHKEFDL  223 (358)
Q Consensus       153 ~f~l-~~~-g~~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~-------~~~~~~~  223 (358)
                      ||++ +++ |+.++|++++||+|||.+||+||++|.+..+.|++++++|++   .+++|++++++.       +.+++.+
T Consensus         5 df~~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~---~g~~Il~fP~nqF~~qE~~~~~ei~~   81 (184)
T d2f8aa1           5 AFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGP---RGLVVLGFPCNQFGHQENAKNEEILN   81 (184)
T ss_dssp             GCEECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGG---GTEEEEEEECCCSTTTTCSCHHHHHH
T ss_pred             eeEEEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcc---cceeEEEeeccccccccccchhhhhh
Confidence            5777 775 678999999999999999999999999999999999999987   899999999864       3456666


Q ss_pred             hhh
Q 018266          224 NHS  226 (358)
Q Consensus       224 ~~~  226 (358)
                      +++
T Consensus        82 f~~   84 (184)
T d2f8aa1          82 SLK   84 (184)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.49  E-value=7.5e-14  Score=103.96  Aligned_cols=69  Identities=20%  Similarity=0.432  Sum_probs=60.4

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +++++|+||++||++|+.+.|.+.++.+++++     ..++.+.+|..                       ..++++|+|
T Consensus        18 ~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~-----~~~~~vd~d~~-----------------------~~~~~~~~V   69 (103)
T d1syra_          18 NELVIVDFFAEWCGPCKRIAPFYEECSKTYTK-----MVFIKVDVDEV-----------------------SEVTEKENI   69 (103)
T ss_dssp             CSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT-----SEEEEEETTTT-----------------------HHHHHHTTC
T ss_pred             CCcEEEEEeCCcccCcccccccchhhhhcccc-----eEEEeeccccC-----------------------cceeeeeee
Confidence            58999999999999999999999999999853     56777777754                       678999999


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      .++||++++ ++|+.+.+
T Consensus        70 ~~~Pt~i~~-k~G~~v~~   86 (103)
T d1syra_          70 TSMPTFKVY-KNGSSVDT   86 (103)
T ss_dssp             CSSSEEEEE-ETTEEEEE
T ss_pred             ecceEEEEE-ECCEEEEE
Confidence            999999999 78988876

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.48  E-value=7.9e-14  Score=117.16  Aligned_cols=118  Identities=14%  Similarity=0.191  Sum_probs=96.8

Q ss_pred             hhhccCCcee-cCC-Cceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCC--HHH
Q 018266          147 LAIEGRDYVL-SRD-HRKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRD--HKE  220 (358)
Q Consensus       147 ~~~~~p~f~l-~~~-g~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~--~~~  220 (358)
                      +|.++|+|++ +.+ +..++++++ +||+++|+|| +.|||.|..++..|.+.+++|.+   .+++|++||.|..  +..
T Consensus         4 iGd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~---~~~~vigiS~Ds~~sh~~   80 (219)
T d1xcca_           4 LGATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLK---LNCKLIGFSCNSKESHDK   80 (219)
T ss_dssp             TTCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHT---TTEEEEEEESSCHHHHHH
T ss_pred             CCCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcc---cceEEEeecCccHhHHhH
Confidence            6899999999 343 336899886 7899999998 89999999999999999999987   8999999999964  345


Q ss_pred             HHHhhh---cCCccccccCchhHHHHHHHcCCC------------ceeeEEEECCCCcEEec
Q 018266          221 FDLNHS---IMPWLAIPYEDRARQDLCRIFNIK------------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~v~------------~~P~~~lid~~G~v~~~  267 (358)
                      |.+...   ...-+.+|...|....+++.||+.            ...+++|||++|+|++.
T Consensus        81 w~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~  142 (219)
T d1xcca_          81 WIEDIKYYGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKAT  142 (219)
T ss_dssp             HHHHHHHHHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEE
T ss_pred             HhhhhHhhcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEE
Confidence            555443   223467888889999999999982            23689999999999876

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.9e-14  Score=108.56  Aligned_cols=71  Identities=17%  Similarity=0.374  Sum_probs=62.2

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|+|+|.||++||++|+.+.|.|.+++++|+    +.+.++.|.+|..                       .+++++|+
T Consensus        21 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~----~~v~~~~VDvd~~-----------------------~~la~~~~   73 (137)
T d1qgva_          21 EDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK----NFAVIYLVDITEV-----------------------PDFNKMYE   73 (137)
T ss_dssp             SSSEEEEEEECTTSHHHHHHHHHHHHHHHHHT----TTEEEEEEETTTC-----------------------CTTTTSSC
T ss_pred             CCCEEEEEEECCCCccchhcChHHHHHHHHhh----ccceEEEeecccc-----------------------chhhhhcC
Confidence            46899999999999999999999999999997    5678888888764                       57889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |+++||+++| .+|+.+..
T Consensus        74 I~~~PT~~~f-~~g~~i~~   91 (137)
T d1qgva_          74 LYDPCTVMFF-FRNKHIMI   91 (137)
T ss_dssp             SCSSCEEEEE-ETTEEEEE
T ss_pred             eeeEEEEEEE-eCCcEEEE
Confidence            9999999999 77776643

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=6e-14  Score=107.04  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=63.7

Q ss_pred             cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          168 LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       168 ~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      ..+++|+|.||++|||+|+.+.|.|.++.++|.+   .++.++.|..|.                       ...++++|
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~---~~~~~~~Vd~d~-----------------------~~~l~~~~   81 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQ---FDWQVAVADLEQ-----------------------SEAIGDRF   81 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTT---SCCEEEEECHHH-----------------------HHHHHHTT
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCC---CceEEEEEECCC-----------------------CHHHHHhc
Confidence            3457999999999999999999999999999874   466666665543                       47899999


Q ss_pred             CCCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHh
Q 018266          248 NIKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKE  298 (358)
Q Consensus       248 ~v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~  298 (358)
                      +|+++||++++ ++|+.+.+       ..|...       .++|.+.++..
T Consensus        82 ~V~~~Pt~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~l  117 (119)
T d2es7a1          82 NVRRFPATLVF-TDGKLRGA-------LSGIHP-------WAELLTLMRSI  117 (119)
T ss_dssp             TCCSSSEEEEE-SCC----C-------EESCCC-------HHHHHHHHHHH
T ss_pred             CcCcceEEEEE-EcCeEEEE-------eeCCCC-------HHHHHHHHHHH
Confidence            99999999999 78888877       466554       44555555543

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=3.8e-14  Score=110.04  Aligned_cols=94  Identities=14%  Similarity=0.200  Sum_probs=73.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++|+|.||++|||+|+.+.|.|.++.++|.+   ..+.+..|.+|.                       +.+++++|+
T Consensus        35 ~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~---~~~~~a~Vd~d~-----------------------~~~la~~~~   88 (132)
T d2hfda1          35 PDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD---YTWQVAIADLEQ-----------------------SEAIGDRFG   88 (132)
T ss_dssp             SEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTT---SCEEEEEECHHH-----------------------HHHHHHHHT
T ss_pred             CCcEEEEEeeCCCChhHHHHHHHHHHHHHHccC---CcceeEEEEecC-----------------------CHHHHHhhc
Confidence            357899999999999999999999999999874   445555555443                       579999999


Q ss_pred             CCceeeEEEECCCCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHHhcCCCC
Q 018266          249 IKGIPALVLIGPDGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKKEGDALP  303 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~~~~~~~  303 (358)
                      |.++||++++ ++|+.+.+       +.|...       .++|.+.++..+..-+
T Consensus        89 V~~~PT~~~~-~~G~~v~~-------~~G~~~-------~~~l~~~i~~ll~~~~  128 (132)
T d2hfda1          89 VFRFPATLVF-TGGNYRGV-------LNGIHP-------WAELINLMRGLVEPQQ  128 (132)
T ss_dssp             CCSCCEEEEE-ETTEEEEE-------ECCCSC-------HHHHHHHHHHHHSCSS
T ss_pred             cCcceeEEEE-EcCcEeee-------ecCCCC-------HHHHHHHHHHHhCccc
Confidence            9999999999 88888877       456554       5566666776655433

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.43  E-value=3.8e-14  Score=101.68  Aligned_cols=67  Identities=24%  Similarity=0.360  Sum_probs=54.9

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      +|+.+++|||+||++|+.+.|.+.++++++.    ..+.++.+..|..                       .+++++|+|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~----~~~~~~~~~~d~~-----------------------~~la~~~~V   54 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMP----DAVEVEYINVMEN-----------------------PQKAMEYGI   54 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCS----SSEEEEEEESSSS-----------------------CCTTTSTTT
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccc----ccccccccccccc-----------------------ccccccCCc
Confidence            5788999999999999999999999998876    5566777776653                       467889999


Q ss_pred             CceeeEEEECCCCcE
Q 018266          250 KGIPALVLIGPDGKT  264 (358)
Q Consensus       250 ~~~P~~~lid~~G~v  264 (358)
                      +++||++ ++++|++
T Consensus        55 ~~~Pt~~-i~~~g~~   68 (85)
T d1fo5a_          55 MAVPTIV-INGDVEF   68 (85)
T ss_dssp             CCSSEEE-ETTEEEC
T ss_pred             eEeeEEE-EECCcEE
Confidence            9999975 5567653

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.7e-14  Score=107.76  Aligned_cols=81  Identities=20%  Similarity=0.395  Sum_probs=63.6

Q ss_pred             cccCCcEEEEEEecc-------CCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCch
Q 018266          166 SELAGKTIGLYFGAH-------WCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDR  238 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~-------wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      .+.+||+|+|+|||+       ||++|+.+.|.+.+++++++    +++.++.|+++...+                ..+
T Consensus        17 ~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~----~~~~~~~vdv~~~~~----------------~~d   76 (119)
T d1woua_          17 EQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHIS----EGCVFIYCQVGEKPY----------------WKD   76 (119)
T ss_dssp             HTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCC----TTEEEEEEECCCHHH----------------HHC
T ss_pred             HHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcC----CceEEEEEECCCCcc----------------cch
Confidence            345789999999995       99999999999999988876    568888898875321                011


Q ss_pred             hHHHHHHHcCCCceeeEEEECCCCcEEe
Q 018266          239 ARQDLCRIFNIKGIPALVLIGPDGKTIS  266 (358)
Q Consensus       239 ~~~~l~~~~~v~~~P~~~lid~~G~v~~  266 (358)
                      .+..++++|+|.++||+++++..++++.
T Consensus        77 ~~~~l~~~~~V~~iPT~i~~~~g~~l~~  104 (119)
T d1woua_          77 PNNDFRKNLKVTAVPTLLKYGTPQKLVE  104 (119)
T ss_dssp             TTCHHHHHHCCCSSSEEEETTSSCEEEG
T ss_pred             hhhhHHHhCCeEEEEEEEEEECCeEEee
Confidence            2457889999999999999965555553

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=6.6e-14  Score=109.83  Aligned_cols=87  Identities=21%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             CCCCc-eecccC-CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCC---ccc
Q 018266           30 SRQGK-VPLSSC-GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDG---TLI  104 (358)
Q Consensus        30 ~~~g~-v~l~~~-~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~---~~~  104 (358)
                      +..|+ ++.+.+ +||+|+|+|||+||++|+..+|.+.++++    .+  +.++.++.+.+......+......   .++
T Consensus         6 d~~g~~~~~~~l~~Gk~vvl~FwatWC~pC~~e~p~l~~~~~----~~--~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~   79 (136)
T d1z5ye1           6 DNPGQFYQADVLTQGKPVLLNVWATWCPTSRAEHQYLNQLSA----QG--IRVVGMNYKDDRQKAISWLKELGNPYALSL   79 (136)
T ss_dssp             SSTTCEECHHHHHSSSCEEEEEECTTCHHHHHHHHHHHHHHH----TT--CCEEEEEESCCHHHHHHHHHHHCCCCSEEE
T ss_pred             cCCCcEecHHHHcCCCEEEEEEEcCcCCCcCccccchhhhhh----hh--hhhcccccccchhhhHHHHHHcCCccceee
Confidence            56688 998887 89999999999999999999999988754    33  779999998887776666665332   334


Q ss_pred             ccccceeeeccccCCCCc
Q 018266          105 EEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       105 ~~~~~~l~~~~gi~~~P~  122 (358)
                      .+....+...|++.++|+
T Consensus        80 ~d~~~~~~~~~~v~~~P~   97 (136)
T d1z5ye1          80 FDGDGMLGLDLGVYGAPE   97 (136)
T ss_dssp             EESSCHHHHHHTCCSBSE
T ss_pred             cccchhHHHhcccCCcce
Confidence            444556778888888885

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=2e-12  Score=104.31  Aligned_cols=116  Identities=18%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             CCcee-cCCCceeeecccCCcEEEEEEeccCCcc-cHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCH---HHHHHhhh
Q 018266          152 RDYVL-SRDHRKITVSELAGKTIGLYFGAHWCPP-CRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDH---KEFDLNHS  226 (358)
Q Consensus       152 p~f~l-~~~g~~~~l~~~~~k~vlv~F~a~wC~~-C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~---~~~~~~~~  226 (358)
                      +||++ +.+|+++++++++||++||+||.+||+. |......+..+...+.......+.++.++.+...   +.......
T Consensus         7 ~dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (169)
T d2b7ka1           7 GPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS   86 (169)
T ss_dssp             CCCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCTTTCCHHHHHHHHT
T ss_pred             CCeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeeccccccCchhhhhhhhc
Confidence            68999 9999999999999999999999999987 6777777776666655433456777777765432   22233322


Q ss_pred             --cCCccccccCchhHHHHHHH----------------cCCCceeeEEEECCCCcEEec
Q 018266          227 --IMPWLAIPYEDRARQDLCRI----------------FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 --~~~~~~~~~~~~~~~~l~~~----------------~~v~~~P~~~lid~~G~v~~~  267 (358)
                        ...|................                |.+...|+++|||++|+++.+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~~~fLID~~G~vv~~  145 (169)
T d2b7ka1          87 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDA  145 (169)
T ss_dssp             TSCTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEE
T ss_pred             cccccccccccchhhhhhhhhhhheeeeecccCCcccCceeeccceEEEECCCCeEEEE
Confidence              22233333333333333333                345668999999999999977

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.39  E-value=1.8e-13  Score=108.40  Aligned_cols=89  Identities=18%  Similarity=0.266  Sum_probs=68.7

Q ss_pred             CCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh---CCCcccc
Q 018266           30 SRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS---SDGTLIE  105 (358)
Q Consensus        30 ~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~---~~~~~~~  105 (358)
                      +.++. +++++++||+++|+|||+||++|+..+|.+.++++..     +++++.|+.+.+.....++...   ....+..
T Consensus        18 ~~~~~~~~~~~~kgK~vll~fwa~wC~~C~~~~p~l~~l~~~~-----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~   92 (144)
T d1knga_          18 NVQVPGLDPAAFKGKVSLVNVWASWCVPCHDEAPLLTELGKDK-----RFQLVGINYKDAADNARRFLGRYGNPFGRVGV   92 (144)
T ss_dssp             TEECCCBCGGGGTTSCEEEEEECTTCHHHHHHHHHHHHHTTCT-----TSEEEEEEESCCHHHHHHHHHHHCCCCSEEEE
T ss_pred             CCcCCccCHHHhCCCEEEEEeeccccccccccCchhhhhhhcc-----CceeEEEEeeechHHHHHHHHHcCCccccccc
Confidence            44456 9999999999999999999999999999998775543     2778999988877766666655   2223444


Q ss_pred             cccceeeeccccCCCCcc
Q 018266          106 EDLIGLIEDYGADAYPFT  123 (358)
Q Consensus       106 ~~~~~l~~~~gi~~~P~~  123 (358)
                      +....+.+.|++.++|++
T Consensus        93 d~~~~~~~~~~v~~~P~~  110 (144)
T d1knga_          93 DANGRASIEWGVYGVPET  110 (144)
T ss_dssp             ETTSHHHHHTTCCSSCEE
T ss_pred             cccchhhhhcCccccceE
Confidence            555678888888888853

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.38  E-value=1.3e-13  Score=104.18  Aligned_cols=65  Identities=31%  Similarity=0.627  Sum_probs=53.9

Q ss_pred             ecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           36 PLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      .|++..||+|+|+|||+||+||+.+.|.|+++++++.+.   +.++.|++|...                    .++++|
T Consensus        19 ~l~~~~~k~vlv~f~a~wC~~C~~~~p~~~~l~~~~~~~---~~~~~i~~d~~~--------------------~l~~~~   75 (111)
T d1xwaa_          19 QLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADN---VVVLKVDVDECE--------------------DIAMEY   75 (111)
T ss_dssp             HHHHHTTSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCH--------------------HHHHHT
T ss_pred             HHHhcCCCEEEEEEECCcccCccccchhHHHHhhhcccc---eEEEEEEeecCc--------------------chhhcC
Confidence            455567999999999999999999999999999998765   677777777655                    467788


Q ss_pred             ccCCCCcc
Q 018266          116 GADAYPFT  123 (358)
Q Consensus       116 gi~~~P~~  123 (358)
                      +|+++|+.
T Consensus        76 ~V~~~Pt~   83 (111)
T d1xwaa_          76 NISSMPTF   83 (111)
T ss_dssp             TCCSSSEE
T ss_pred             CCccccEE
Confidence            88888863

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.37  E-value=9.2e-13  Score=100.62  Aligned_cols=69  Identities=22%  Similarity=0.487  Sum_probs=60.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .++.++|.||++||++|+.+.|.+.++++.++.   .++.|+.|+++..                       ..++++|+
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~---~~v~~~~vd~~~~-----------------------~~l~~~~~   79 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVE---KNITLAQIDCTEN-----------------------QDLCMEHN   79 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTT---TTCEEEEEETTTC-----------------------HHHHHHTT
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcc---cceeeeeeeccch-----------------------HHHHHHhc
Confidence            468999999999999999999999999999874   6688888888764                       68999999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++||++++ ++|+.
T Consensus        80 v~~~Pti~~f-~~g~~   94 (119)
T d2b5ea4          80 IPGFPSLKIF-KNSDV   94 (119)
T ss_dssp             CCSSSEEEEE-ETTCT
T ss_pred             cccCCeEEEE-ECCEE
Confidence            9999999999 66654

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=99.36  E-value=9.8e-13  Score=107.69  Aligned_cols=71  Identities=31%  Similarity=0.525  Sum_probs=61.4

Q ss_pred             ccc-ccCCCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC-ChhHHHHHHh
Q 018266           25 VEF-LLSRQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH-DENGFEEHFK   97 (358)
Q Consensus        25 ~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~-~~~~~~~~~~   97 (358)
                      ++| |++.+|+ ++|++++||+|+|+||++||++|+..++.+.++++++...+  +.++.|++|. +.+..+++..
T Consensus        37 Pdf~l~d~~G~~v~L~~~kGK~vll~F~a~wC~~C~~~~~~l~~~~~~~~~~~--~~vv~vs~d~~~~~~~~~~~~  110 (176)
T d1jfua_          37 PDLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPALDELQGKLSGPN--FEVVAINIDTRDPEKPKTFLK  110 (176)
T ss_dssp             CCCEEECTTSCEEEGGGGTTSEEEEEEECTTCHHHHHHHHHHHHHHHHHCBTT--EEEEEEECCCSCTTHHHHHHH
T ss_pred             CCeEEECCCcCEEeHHHhCCCEEEEEeccCcccchHHHHHhhhhccccccccc--cccccccccccchhhhhhhHh
Confidence            466 9999999 99999999999999999999999999999999999998877  8899999875 3444555533

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.36  E-value=6.1e-13  Score=95.19  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=51.8

Q ss_pred             EEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCce
Q 018266          173 IGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGI  252 (358)
Q Consensus       173 vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~  252 (358)
                      .+..||++||++|+.+.|.+++++++|.    +++.++.+++|..                       ..++++|+|+++
T Consensus         4 ~v~~F~a~wC~~C~~~~p~~~~l~~~~~----~~v~~~~vd~d~~-----------------------~~l~~~~~V~~~   56 (85)
T d1nhoa_           4 NIEVFTSPTCPYCPMAIEVVDEAKKEFG----DKIDVEKIDIMVD-----------------------REKAIEYGLMAV   56 (85)
T ss_dssp             CEEEESCSSSCCSTTHHHHHHHHHHHHC----SSCCEEEECTTTC-----------------------GGGGGGTCSSCS
T ss_pred             EEEEEECCCCcchHHHHHHHhhhccccc----ccccccccccccc-----------------------hhhHHhcCceEe
Confidence            3556999999999999999999999997    5688888888764                       578899999999


Q ss_pred             eeEEEECCCC
Q 018266          253 PALVLIGPDG  262 (358)
Q Consensus       253 P~~~lid~~G  262 (358)
                      ||+++ +..|
T Consensus        57 Pt~~~-~~~~   65 (85)
T d1nhoa_          57 PAIAI-NGVV   65 (85)
T ss_dssp             SEEEE-TTTE
T ss_pred             CEEEE-CCcE
Confidence            99765 4444

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=99.34  E-value=4.9e-13  Score=99.81  Aligned_cols=60  Identities=23%  Similarity=0.547  Sum_probs=51.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||++|+.+.|.|.++++++++.   +.++.|++|...                    .++++|+|.++
T Consensus        16 ~~k~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~vd~~~~~--------------------~~~~~~~V~~~   72 (105)
T d1nw2a_          16 GDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADK---VTVAKLNVDENP--------------------ETTSQFGIMSI   72 (105)
T ss_dssp             SSSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---CEEEEEETTTCH--------------------HHHHHTTCCBS
T ss_pred             CCCcEEEEEECCCCCCcccccchhhhhhhhcCCc---eEEEEEECCCCc--------------------ccHHHCCccee
Confidence            3689999999999999999999999999999765   788888888765                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (105)
T d1nw2a_          73 PTL   75 (105)
T ss_dssp             SEE
T ss_pred             eEE
Confidence            864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.33  E-value=1.4e-12  Score=98.91  Aligned_cols=75  Identities=24%  Similarity=0.459  Sum_probs=59.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++++|+||++||++|+.+.|.|.++.++++.      .+.++.++...+                 .+....++++|+
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~------~v~~v~~~~~~~-----------------~~~~~~~~~~~~   81 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKA------HIYFINSEEPSQ-----------------LNDLQAFRSRYG   81 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCC------CCEEEETTCGGG-----------------HHHHHHHHHHHT
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhh------hhhhheeecccc-----------------cccccccccccc
Confidence            467899999999999999999999999888862      355667764321                 112357889999


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      |.++||++++ ++|+++.+
T Consensus        82 V~~~PTli~~-~~gk~~~~   99 (115)
T d1zmaa1          82 IPTVPGFVHI-TDGQINVR   99 (115)
T ss_dssp             CCSSCEEEEE-ETTEEEEE
T ss_pred             cccccEEEEE-ECCEEEEE
Confidence            9999999999 68888876

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.32  E-value=5.3e-13  Score=99.98  Aligned_cols=60  Identities=20%  Similarity=0.544  Sum_probs=50.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||++|+.+.|.+.++++++...   +.++.|++|...                    .++++|+|.++
T Consensus        18 s~kpvlv~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~vd~d~~~--------------------~l~~~~~V~~~   74 (107)
T d1dbya_          18 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDK---LKCVKLNTDESP--------------------NVASEYGIRSI   74 (107)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHHTCCSS
T ss_pred             CCCcEEEEEECCCCCCccccChHHHHHHHhhccc---ceEEEEecccch--------------------hHHHHhcccce
Confidence            4789999999999999999999999999888765   788888888765                    46777788888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (107)
T d1dbya_          75 PTI   77 (107)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            863

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.32  E-value=1.2e-12  Score=103.32  Aligned_cols=89  Identities=18%  Similarity=0.297  Sum_probs=66.7

Q ss_pred             CCCc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC-----hhHHHHHHhhCCC--c
Q 018266           31 RQGK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD-----ENGFEEHFKSSDG--T  102 (358)
Q Consensus        31 ~~g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~-----~~~~~~~~~~~~~--~  102 (358)
                      .+|+ ++++.+.||+++|+||++||++|+..+|.+.++++++++.   ++++.|+.+..     .....++..+...  .
T Consensus        17 ~ng~~~~~~~~~~k~vvl~f~a~~C~~C~~~~p~l~~l~~~~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~p   93 (143)
T d2b5xa1          17 LNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKYQDQ---LNVVAVHMPRSEDDLDPGKIKETAAEHDITQP   93 (143)
T ss_dssp             ESCCCCHHHHTTTSCEEEEEECTTCHHHHHHHHHHHHHHHHHTTT---SEEEEEECCCSTTTSSHHHHHHHHHHTTCCSC
T ss_pred             cCCeEecHHHhCCCEEEEEEEcCCCcchhhhhhhhhhhhhhhhcc---ccceeEEeeccccccchhhhhhHHHhhccCcc
Confidence            3788 9999999999999999999999999999999999999764   78899987542     2334444444222  3


Q ss_pred             ccccccceeeeccccCCCCc
Q 018266          103 LIEEDLIGLIEDYGADAYPF  122 (358)
Q Consensus       103 ~~~~~~~~l~~~~gi~~~P~  122 (358)
                      ++.+....+.+.|++.++|+
T Consensus        94 ~~~D~~~~~~~~~~v~~~P~  113 (143)
T d2b5xa1          94 IFVDSDHALTDAFENEYVPA  113 (143)
T ss_dssp             EEECSSCHHHHHTCCCCSSE
T ss_pred             ccccCccchHHHcCCCcCCE
Confidence            33444456777777777774

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=7.9e-13  Score=99.18  Aligned_cols=60  Identities=30%  Similarity=0.605  Sum_probs=50.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||+||+.+.|.+.+++.++...   +.++.+++|.+.                    .++++|+|.++
T Consensus        19 ~~~~v~v~F~a~wC~~C~~~~~~~~~~a~~~~~~---~~~~~vd~d~~~--------------------~l~~~~~v~~~   75 (108)
T d2trxa_          19 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK---LTVAKLNIDQNP--------------------GTAPKYGIRGI   75 (108)
T ss_dssp             CSSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---EEEEEEETTTCT--------------------THHHHTTCCSS
T ss_pred             CCCcEEEEEECCCCCCccccCcHHHHHHHHhhcc---eeeeeccccchh--------------------hHHHHhCCCcE
Confidence            3799999999999999999999999999887654   777777777654                    57888899999


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        76 PT~   78 (108)
T d2trxa_          76 PTL   78 (108)
T ss_dssp             SEE
T ss_pred             EEE
Confidence            964

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.32  E-value=3.1e-12  Score=93.53  Aligned_cols=70  Identities=16%  Similarity=0.172  Sum_probs=58.0

Q ss_pred             ccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHH
Q 018266          167 ELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRI  246 (358)
Q Consensus       167 ~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  246 (358)
                      ++.+...++.|+++|||+|+.+.|.|++++..+     .++.+..+..+..                       .+++++
T Consensus        12 ~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~-----~~i~~~~vd~~~~-----------------------~~l~~~   63 (96)
T d1hyua4          12 DIDGDFEFETYYSLSCHNCPDVVQALNLMAVLN-----PRIKHTAIDGGTF-----------------------QNEITE   63 (96)
T ss_dssp             HCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHC-----TTEEEEEEETTTC-----------------------HHHHHH
T ss_pred             hcCCCeEEEEEECCCCcchHHHHHHHHHHHHhC-----CceEEEEEecccc-----------------------hHHHhh
Confidence            456778889999999999999999999998775     4577777777764                       689999


Q ss_pred             cCCCceeeEEEECCCCcEEec
Q 018266          247 FNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       247 ~~v~~~P~~~lid~~G~v~~~  267 (358)
                      |+|+++||+++   +|+.++.
T Consensus        64 ~~I~~vPt~~~---ng~~~~~   81 (96)
T d1hyua4          64 RNVMGVPAVFV---NGKEFGQ   81 (96)
T ss_dssp             TTCCSSSEEEE---TTEEEEE
T ss_pred             cccccccEEEE---CCEEEEe
Confidence            99999999865   7887754

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=7.2e-13  Score=94.83  Aligned_cols=59  Identities=19%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +|+.+++|||+||+||+.+.|.|+++++++...   +.++.+++|.+                    .+++++|+|.++|
T Consensus         2 ~kv~v~~F~a~wC~~C~~~~p~~~~~~~~~~~~---~~~~~~~~d~~--------------------~~la~~~~V~~~P   58 (85)
T d1fo5a_           2 SKVKIELFTSPMCPHCPAAKRVVEEVANEMPDA---VEVEYINVMEN--------------------PQKAMEYGIMAVP   58 (85)
T ss_dssp             CCEEEEEEECCCSSCCCTHHHHHHHHHHHCSSS---EEEEEEESSSS--------------------CCTTTSTTTCCSS
T ss_pred             CceEEEEEECCCCcChHhhhhhccccccccccc---ccccccccccc--------------------ccccccCCceEee
Confidence            588999999999999999999999999987654   55666666644                    3689999999999


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        59 t~   60 (85)
T d1fo5a_          59 TI   60 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.6e-13  Score=101.61  Aligned_cols=71  Identities=23%  Similarity=0.518  Sum_probs=57.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+|.++|.||++||++|+.+.|.+.++.+++.. ....+.++.|.++..                       ..++++|+
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~-~~~~v~~~~vd~~~~-----------------------~~l~~~~~   78 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKA-EGSEIRLAKVDATEE-----------------------SDLAQQYG   78 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTT-TCCCCBCEEEETTTC-----------------------CSSHHHHT
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccc-cccceeeeccccccc-----------------------hhHHHHhC
Confidence            468999999999999999999999999999874 234566666666643                       46888999


Q ss_pred             CCceeeEEEECCCCcE
Q 018266          249 IKGIPALVLIGPDGKT  264 (358)
Q Consensus       249 v~~~P~~~lid~~G~v  264 (358)
                      |.++||++++ ++|+.
T Consensus        79 i~~~Pt~~~~-~~G~~   93 (120)
T d1meka_          79 VRGYPTIKFF-RNGDT   93 (120)
T ss_dssp             CCSSSEEEEE-ESSCS
T ss_pred             CccCCeEEEE-ECCeE
Confidence            9999999999 55543

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1e-12  Score=102.44  Aligned_cols=61  Identities=8%  Similarity=0.185  Sum_probs=52.4

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      .++|+|+|+|||+||++|+++.|.|.++++++.+.   +.++.|++|...                    +++++|+|++
T Consensus        20 ~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~~---v~~~~VDvd~~~--------------------~la~~~~I~~   76 (137)
T d1qgva_          20 EEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNF---AVIYLVDITEVP--------------------DFNKMYELYD   76 (137)
T ss_dssp             CSSSEEEEEEECTTSHHHHHHHHHHHHHHHHHTTT---EEEEEEETTTCC--------------------TTTTSSCSCS
T ss_pred             CCCCEEEEEEECCCCccchhcChHHHHHHHHhhcc---ceEEEeeccccc--------------------hhhhhcCeee
Confidence            35799999999999999999999999999999765   667777776544                    6899999999


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        77 ~PT~   80 (137)
T d1qgva_          77 PCTV   80 (137)
T ss_dssp             SCEE
T ss_pred             EEEE
Confidence            9964

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=99.31  E-value=8.6e-13  Score=98.24  Aligned_cols=59  Identities=24%  Similarity=0.516  Sum_probs=51.0

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +|+|+|+|||+||+||+++.|.+.++++++...   +.++.|++|.+.                    .++++|+|+++|
T Consensus        17 ~~~vlv~F~a~wC~~C~~~~~~~~~l~~~~~~~---~~~~~v~~d~~~--------------------~l~~~~~V~~~P   73 (104)
T d1fb6a_          17 EVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGK---IAVYKLNTDEAP--------------------GIATQYNIRSIP   73 (104)
T ss_dssp             SSCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---CEEEEEETTTCH--------------------HHHHHTTCCSSS
T ss_pred             CCcEEEEEEcCccCCccccCchhHHHHHhhcCc---cceeEEecccch--------------------hhhhhcceeeee
Confidence            689999999999999999999999999998776   667778887665                    468888999999


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        74 t~   75 (104)
T d1fb6a_          74 TV   75 (104)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=99.30  E-value=9.3e-13  Score=98.77  Aligned_cols=59  Identities=24%  Similarity=0.606  Sum_probs=50.8

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +|+|+|+|||+||+||+.+.|.|+++++++.+.   +.++.|++|.+.                    .++++|+|+++|
T Consensus        20 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~---~~~~~vd~d~~~--------------------~l~~~~~I~~~P   76 (108)
T d1thxa_          20 EQPVLVYFWASWCGPCQLMSPLINLAANTYSDR---LKVVKLEIDPNP--------------------TTVKKYKVEGVP   76 (108)
T ss_dssp             SSCEEEEEECTTCTTHHHHHHHHHHHHHHTTTT---CEEEEEESTTCH--------------------HHHHHTTCCSSS
T ss_pred             CCcEEEEEECCCCCCccccchHHHHHHHhcCCc---ceeceecccccH--------------------HHHHHhcccCCC
Confidence            589999999999999999999999999988765   778888888665                    467888888888


Q ss_pred             cc
Q 018266          122 FT  123 (358)
Q Consensus       122 ~~  123 (358)
                      +.
T Consensus        77 t~   78 (108)
T d1thxa_          77 AL   78 (108)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.28  E-value=1.1e-12  Score=103.21  Aligned_cols=61  Identities=26%  Similarity=0.547  Sum_probs=51.1

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCC
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      +|.|+|+||||||+||+.+.|.|.++++.++...  ..+.++++|.+.                    .++.+|+|.+||
T Consensus        30 ~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~~~--~~v~~~~~d~~~--------------------~~~~~~~v~~~P   87 (140)
T d2b5ea1          30 KKDVLVLYYAPWCGHCKRLAPTYQELADTYANAT--SDVLIAKLDHTE--------------------NDVRGVVIEGYP   87 (140)
T ss_dssp             TCCEEEEEECTTCHHHHHHHHHHHHHHHHHHHHC--SSCEEEEEEGGG--------------------CCCSSCCCSSSS
T ss_pred             CCCEEEEEEeccCcccchhHHHHHHHHHHHhccc--cceEEEeeeccc--------------------hhccccccccCC
Confidence            6899999999999999999999999999998765  345666777544                    578999999999


Q ss_pred             cch
Q 018266          122 FTR  124 (358)
Q Consensus       122 ~~~  124 (358)
                      +..
T Consensus        88 tl~   90 (140)
T d2b5ea1          88 TIV   90 (140)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            753

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=1.8e-12  Score=98.91  Aligned_cols=62  Identities=21%  Similarity=0.451  Sum_probs=52.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      +++.++|+||+|||+||+++.|.|+++++.+....  +.++.|+++...                    +++.+|+|.++
T Consensus        26 ~~~~~lV~fya~wC~~C~~~~~~~~~la~~~~~~~--v~~~~vd~~~~~--------------------~l~~~~~v~~~   83 (119)
T d2b5ea4          26 SHDLVLAEFFAPWCGHCKNMAPEYVKAAETLVEKN--ITLAQIDCTENQ--------------------DLCMEHNIPGF   83 (119)
T ss_dssp             TCSEEEEEEECTTCHHHHHHHHHHHHHHHHTTTTT--CEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             cCCeEEEEEECCccCcccccchhhhhhhhhhcccc--eeeeeeeccchH--------------------HHHHHhccccC
Confidence            46899999999999999999999999999987544  778888887654                    57888999999


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        84 Pti~   87 (119)
T d2b5ea4          84 PSLK   87 (119)
T ss_dssp             SEEE
T ss_pred             CeEE
Confidence            9643

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=99.26  E-value=1.6e-12  Score=98.12  Aligned_cols=60  Identities=27%  Similarity=0.499  Sum_probs=50.5

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ..+|+|+|+|||+||++|+.+.|.|+++++++..+   +.++.|++|.+.                    +++++|+|++
T Consensus        22 ~~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~--------------------~l~~~~~v~~   78 (112)
T d1ep7a_          22 EEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGK---VIFLKVDVDAVA--------------------AVAEAAGITA   78 (112)
T ss_dssp             HHTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTTT---SEEEEEETTTTH--------------------HHHHHHTCCB
T ss_pred             hcCCeEEEEEEcCCcCCCcccchhhhhhhhcccce---EEEEEeeccccc--------------------cccccccccC
Confidence            35799999999999999999999999999998754   778778777655                    4677788888


Q ss_pred             CCc
Q 018266          120 YPF  122 (358)
Q Consensus       120 ~P~  122 (358)
                      +|+
T Consensus        79 ~Pt   81 (112)
T d1ep7a_          79 MPT   81 (112)
T ss_dssp             SSE
T ss_pred             CCE
Confidence            885

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.25  E-value=7.4e-12  Score=101.12  Aligned_cols=98  Identities=16%  Similarity=0.185  Sum_probs=74.6

Q ss_pred             ecccccCccc-ccC----CCCc-eecccCCCCEEEEEEeCC-CChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           18 TVLASEGVEF-LLS----RQGK-VPLSSCGGKTICLFFSAN-WCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        18 ~~l~~~~~~~-l~~----~~g~-v~l~~~~gk~vlv~F~a~-wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ||+..+.++| +++    .++. |+|++++||.++|.||+. ||++|...+|.|.++++++++.|  ++++.||.|. ..
T Consensus         1 ~lvG~~aP~F~l~~~~~g~~~~~vslsd~~GK~vvl~F~p~~~~p~C~~e~~~~~~~~~~f~~~g--~~vv~IS~D~-~~   77 (166)
T d1we0a1           1 SLIGTEVQPFRAQAFQSGKDFFEVTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELKKLG--VEVYSVSTDT-HF   77 (166)
T ss_dssp             CCTTCBCCCCEEEEECSSSCCEEEETTTTSSSEEEEEECSCTTCSSCTHHHHHHHHHHHHHHHTT--EEEEEEESSC-HH
T ss_pred             CCCCCcCCCCEEeeecCCcceeEeeHHHhCCCeEEEEEecccCCcHHHHHHHHHHHHHHhhcccc--eEEEeccccc-HH
Confidence            4566677788 553    4556 999999999999999955 99999999999999999999988  9999999985 33


Q ss_pred             HHHHHHhh------CCCcccccccceeeeccccC
Q 018266           91 GFEEHFKS------SDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        91 ~~~~~~~~------~~~~~~~~~~~~l~~~~gi~  118 (358)
                      +.+++..+      ....++.+....+++.||+.
T Consensus        78 ~~~~~~~~~~~~~~~~fpll~D~~~~v~~~ygv~  111 (166)
T d1we0a1          78 VHKAWHENSPAVGSIEYIMIGDPSQTISRQFDVL  111 (166)
T ss_dssp             HHHHHHHSCHHHHTCCSEEEECTTCHHHHHTTCE
T ss_pred             HHHHHhhhhhhhcccccccccCcccHHHHHhCCC
Confidence            33333322      22355666667788888764

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.24  E-value=3.3e-12  Score=96.67  Aligned_cols=60  Identities=22%  Similarity=0.478  Sum_probs=48.6

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ..+|+|+|+|||+||++|+.+.|.|+++++.+.+    +.++.|++|...                    .++++|+|++
T Consensus        26 ~~~~~vlv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~~~~~--------------------~l~~~~~V~~   81 (114)
T d1xfla_          26 ESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPN----VLFLKVDTDELK--------------------SVASDWAIQA   81 (114)
T ss_dssp             HTTCEEEEEEECTTCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTSH--------------------HHHHHTTCCS
T ss_pred             ccCCeEEEEEEcCCCCCccccccchhhhcccccc----cceeEEEeeece--------------------eeccccceee
Confidence            3589999999999999999999999999887743    556666666544                    5788889999


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        82 ~Pt~   85 (114)
T d1xfla_          82 MPTF   85 (114)
T ss_dssp             SSEE
T ss_pred             eEEE
Confidence            9963

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.23  E-value=1.4e-12  Score=102.56  Aligned_cols=82  Identities=21%  Similarity=0.357  Sum_probs=59.7

Q ss_pred             cCCCceeeecc-cCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCcccccc
Q 018266          157 SRDHRKITVSE-LAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPY  235 (358)
Q Consensus       157 ~~~g~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~  235 (358)
                      .++++.+.-.- -.+++|+|.||++||++|+.+.|.|.++++.|+.   ....|.++.+|.+                  
T Consensus        16 ~l~~~nf~~~v~~~~k~vlV~F~a~wC~~C~~~~p~~~~la~~~~~---~~~~v~~~~~d~~------------------   74 (140)
T d2b5ea1          16 QLVGKNHDEIVNDPKKDVLVLYYAPWCGHCKRLAPTYQELADTYAN---ATSDVLIAKLDHT------------------   74 (140)
T ss_dssp             EECTTTHHHHHHCTTCCEEEEEECTTCHHHHHHHHHHHHHHHHHHH---HCSSCEEEEEEGG------------------
T ss_pred             EecCcCHHHHHhcCCCCEEEEEEeccCcccchhHHHHHHHHHHHhc---cccceEEEeeecc------------------
Confidence            44555443211 1368999999999999999999999999999875   3334455555543                  


Q ss_pred             CchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          236 EDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       236 ~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                           ..++..|+|.++||++++ ++|+.+
T Consensus        75 -----~~~~~~~~v~~~Ptl~~f-~~g~~~   98 (140)
T d2b5ea1          75 -----ENDVRGVVIEGYPTIVLY-PGGKKS   98 (140)
T ss_dssp             -----GCCCSSCCCSSSSEEEEE-CCTTSC
T ss_pred             -----chhccccccccCCeEEEE-ECCEEc
Confidence                 245678999999999999 566543

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-12  Score=99.14  Aligned_cols=64  Identities=25%  Similarity=0.606  Sum_probs=52.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+++|.|||+||+||+.+.|.|.++++.+...+..+.++.|+++...                    .++.+|+|.+|
T Consensus        23 ~~k~vlV~Fya~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~--------------------~l~~~~~i~~~   82 (120)
T d1meka_          23 AHKYLLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEES--------------------DLAQQYGVRGY   82 (120)
T ss_dssp             HCSEEEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCC--------------------SSHHHHTCCSS
T ss_pred             cCCcEEEEEECCCcCCccccchhhhhhcccccccccceeeeccccccch--------------------hHHHHhCCccC
Confidence            3799999999999999999999999999999776645556666655433                    67889999999


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        83 Pt~~   86 (120)
T d1meka_          83 PTIK   86 (120)
T ss_dssp             SEEE
T ss_pred             CeEE
Confidence            9743

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.7e-12  Score=95.61  Aligned_cols=59  Identities=24%  Similarity=0.516  Sum_probs=47.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+|||+||+||+.+.|.|.++++++.+    ..++.+++|...                    .++++|+|+++
T Consensus        19 ~~k~vvv~F~a~wC~~C~~~~p~~~~l~~~~~~----~~~~~vd~d~~~--------------------~~~~~~~V~~~   74 (105)
T d2ifqa1          19 GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSN----VIFLEVDVDDCQ--------------------DVASECEVKCM   74 (105)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTCH--------------------HHHHHTTCCBS
T ss_pred             CCCEEEEEEEcCCccchhhhhhhhhhhcccccc----ceeeecccccCH--------------------hHHHHcCceEE
Confidence            468999999999999999999999999887754    456667666554                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        75 Pt~   77 (105)
T d2ifqa1          75 PTF   77 (105)
T ss_dssp             SEE
T ss_pred             EEE
Confidence            863

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.4e-12  Score=95.32  Aligned_cols=62  Identities=16%  Similarity=0.322  Sum_probs=50.2

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+..+|+++|+|||+||++|+++.|.|.++++++.+    +.++.+++|...                    .++++|+|
T Consensus        17 ~~~~~klvvv~F~a~wC~~Ck~~~p~~~~la~~~~~----~~f~~vd~d~~~--------------------~l~~~~~v   72 (107)
T d1gh2a_          17 SGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQ----AVFLEVDVHQCQ--------------------GTAATNNI   72 (107)
T ss_dssp             HHTTTSCEEEEEECSSCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTSH--------------------HHHHHTTC
T ss_pred             HhCCCCEEEEEEECCCCCCccccchhhhcccccccc----ccccccccccch--------------------hhhhhcCc
Confidence            334578999999999999999999999999998753    567777776554                    46788888


Q ss_pred             CCCCcc
Q 018266          118 DAYPFT  123 (358)
Q Consensus       118 ~~~P~~  123 (358)
                      .++|+.
T Consensus        73 ~~~Pt~   78 (107)
T d1gh2a_          73 SATPTF   78 (107)
T ss_dssp             CSSSEE
T ss_pred             eeceEE
Confidence            888863

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.21  E-value=4.4e-12  Score=95.65  Aligned_cols=59  Identities=17%  Similarity=0.390  Sum_probs=49.6

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|+|||+||+||+.+.|.|+++++++.    ++.++.|++|...                    +++++|||.++
T Consensus        25 ~~~~vvv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~vd~d~~~--------------------~l~~~~~V~~~   80 (113)
T d1r26a_          25 EDILTVAWFTAVWCGPCKTIERPMEKIAYEFP----TVKFAKVDADNNS--------------------EIVSKCRVLQL   80 (113)
T ss_dssp             SSSCEEEEEECTTCHHHHHTHHHHHHHHHHCT----TSEEEEEETTTCH--------------------HHHHHTTCCSS
T ss_pred             CCCeEEEEEECCCCccchhhceeccccccccc----cccccccccccch--------------------hhHHHccccCC
Confidence            46899999999999999999999999999874    2778888887655                    46788888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        81 Pt~   83 (113)
T d1r26a_          81 PTF   83 (113)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            863

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.3e-12  Score=99.54  Aligned_cols=73  Identities=16%  Similarity=0.332  Sum_probs=55.2

Q ss_pred             ecccCCCCEEEEEEeC-------CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccc
Q 018266           36 PLSSCGGKTICLFFSA-------NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDL  108 (358)
Q Consensus        36 ~l~~~~gk~vlv~F~a-------~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~  108 (358)
                      .+++.+||+|+|+|||       |||+||++++|.+.++++.++++   +.++.|+++....             +.+..
T Consensus        15 ~l~~~~gk~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~---~~~~~vdv~~~~~-------------~~d~~   78 (119)
T d1woua_          15 AVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEG---CVFIYCQVGEKPY-------------WKDPN   78 (119)
T ss_dssp             HHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTT---EEEEEEECCCHHH-------------HHCTT
T ss_pred             HHHHcCCCEEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCc---eEEEEEECCCCcc-------------cchhh
Confidence            3455679999999999       49999999999999998877654   7888888864211             01112


Q ss_pred             ceeeeccccCCCCcch
Q 018266          109 IGLIEDYGADAYPFTR  124 (358)
Q Consensus       109 ~~l~~~~gi~~~P~~~  124 (358)
                      ..++++|+|.++|+..
T Consensus        79 ~~l~~~~~V~~iPT~i   94 (119)
T d1woua_          79 NDFRKNLKVTAVPTLL   94 (119)
T ss_dssp             CHHHHHHCCCSSSEEE
T ss_pred             hhHHHhCCeEEEEEEE
Confidence            4578889999999743

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=5.3e-12  Score=98.55  Aligned_cols=77  Identities=17%  Similarity=0.362  Sum_probs=52.6

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      +.-.||+++|+||++||++|+.+.|.+.+..+..+.  ..+  +|.|.+|.+.                     ......
T Consensus        21 A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~--~~~--fv~v~vd~~~---------------------~~~~~~   75 (135)
T d1sena_          21 AAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL--SHN--FVMVNLEDEE---------------------EPKDED   75 (135)
T ss_dssp             HHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH--HTT--SEEEEEEGGG---------------------SCSCGG
T ss_pred             HHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHh--cCC--cEEEeCCCCc---------------------CHHHHH
Confidence            344689999999999999999999998776544331  134  4555555332                     011111


Q ss_pred             -HcCCCceeeEEEECCCCcEEec
Q 018266          246 -IFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       246 -~~~v~~~P~~~lid~~G~v~~~  267 (358)
                       .+...++|+++++|++|+++..
T Consensus        76 ~~~~~~~~Pt~~~~d~~G~~~~~   98 (135)
T d1sena_          76 FSPDGGYIPRILFLDPSGKVHPE   98 (135)
T ss_dssp             GCTTCSCSSEEEEECTTSCBCTT
T ss_pred             HHhhcccceeEEEECCCCeEEEE
Confidence             2244568999999999998865

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=99.19  E-value=5.7e-12  Score=94.89  Aligned_cols=60  Identities=22%  Similarity=0.518  Sum_probs=48.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+||++||+||+.+.|.|+++++++.+    +.++.+++|...                   ..++++|+|+++
T Consensus        24 ~~k~vvv~f~a~wC~~C~~~~p~~~~l~~~~~~----v~~~~vd~~~~~-------------------~~l~~~~~V~~~   80 (112)
T d1f9ma_          24 GDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLD----VIFLKLDCNQEN-------------------KTLAKELGIRVV   80 (112)
T ss_dssp             TTSCEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEECSSTT-------------------HHHHHHHCCSSS
T ss_pred             CCCEEEEEEEcCCCcchHHHHHHHhhhcccccc----ceeecccccccc-------------------hhhHhheeeccC
Confidence            358999999999999999999999999998753    557777765422                   256788888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        81 Pt~   83 (112)
T d1f9ma_          81 PTF   83 (112)
T ss_dssp             SEE
T ss_pred             CEE
Confidence            864

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.19  E-value=5.7e-12  Score=89.97  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=46.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCCCcc
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAYPFT  123 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~P~~  123 (358)
                      ++.||||||+||+++.|.|+++++++.++   +.++.+++|.+.                    +++++|||.++|+.
T Consensus         5 v~~F~a~wC~~C~~~~p~~~~l~~~~~~~---v~~~~vd~d~~~--------------------~l~~~~~V~~~Pt~   59 (85)
T d1nhoa_           5 IEVFTSPTCPYCPMAIEVVDEAKKEFGDK---IDVEKIDIMVDR--------------------EKAIEYGLMAVPAI   59 (85)
T ss_dssp             EEEESCSSSCCSTTHHHHHHHHHHHHCSS---CCEEEECTTTCG--------------------GGGGGTCSSCSSEE
T ss_pred             EEEEECCCCcchHHHHHHHhhhccccccc---ccccccccccch--------------------hhHHhcCceEeCEE
Confidence            45599999999999999999999999764   777777777654                    68999999999974

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.18  E-value=1.6e-11  Score=99.32  Aligned_cols=65  Identities=31%  Similarity=0.324  Sum_probs=59.0

Q ss_pred             ccCccc-----ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-----l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      .+.++|     |.+.+|+ |+|++++||+|+|.|| +.||++|...+|.|.++++++++.+  ++++.|+.|..
T Consensus         7 ~~APdF~~~~~l~d~~g~~vsLsd~~GK~vVl~F~p~~~c~~C~~e~~~l~~~~~~~~~~~--~~v~~is~d~~   78 (167)
T d1e2ya_           7 HPAPEFDDMALMPNGTFKKVSLSSYKGKYVVLFFYPMDFTFVCPTEIIQFSDDAKRFAEIN--TEVISCSCDSE   78 (167)
T ss_dssp             SBCCCCEEEEECSSSCEEEEEGGGGTTSEEEEEECSCSSCSSCCHHHHHHHHTHHHHHTTT--EEEEEEESSCH
T ss_pred             CCCCCCcccccccCCCCcEEeHHHHCCCeEEEEEcccccccccchhhHHHHHHHHHhhcCc--eEEEeecCCcH
Confidence            345666     6788999 9999999999999999 9999999999999999999999988  89999999864

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=99.17  E-value=4.7e-11  Score=89.94  Aligned_cols=48  Identities=25%  Similarity=0.540  Sum_probs=39.7

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ..+|+|+|+|||+||+||+.+.|.|+++++++.+    +.++.+++|.....
T Consensus        24 ~~~k~vvv~F~a~wC~~C~~~~p~~~~~~~~~~~----~~~~~vd~d~~~~l   71 (113)
T d1ti3a_          24 GSQKLIVVDFTASWCPPCKMIAPIFAELAKKFPN----VTFLKVDVDELKAV   71 (113)
T ss_dssp             TSSSEEEEEEECSSCHHHHHHHHHHHHHHHHCSS----EEEEEEETTTCHHH
T ss_pred             cCCCEEEEEEEcCccccchhhhhhhhhhhccCCC----ceEEeeeeeccccc
Confidence            3579999999999999999999999999987643    66777777766543

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.16  E-value=1.3e-11  Score=91.47  Aligned_cols=59  Identities=22%  Similarity=0.408  Sum_probs=48.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++++++|+||++||++|+.+.|.|.++++++.+    ..++.+++|...                    +++++|+|+++
T Consensus        17 ~~~~vvv~F~a~wC~~C~~~~~~~~~l~~~~~~----~~~~~vd~d~~~--------------------~~~~~~~V~~~   72 (103)
T d1syra_          17 QNELVIVDFFAEWCGPCKRIAPFYEECSKTYTK----MVFIKVDVDEVS--------------------EVTEKENITSM   72 (103)
T ss_dssp             HCSEEEEEEECTTCHHHHHHHHHHHHHHHHCTT----SEEEEEETTTTH--------------------HHHHHTTCCSS
T ss_pred             CCCcEEEEEeCCcccCcccccccchhhhhcccc----eEEEeeccccCc--------------------ceeeeeeeecc
Confidence            468999999999999999999999999998753    557777777654                    46778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        73 Pt~   75 (103)
T d1syra_          73 PTF   75 (103)
T ss_dssp             SEE
T ss_pred             eEE
Confidence            863

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.15  E-value=2.2e-11  Score=90.92  Aligned_cols=67  Identities=10%  Similarity=0.038  Sum_probs=49.4

Q ss_pred             cccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhc-CCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecc
Q 018266           37 LSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRT-RGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDY  115 (358)
Q Consensus        37 l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~-~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (358)
                      +.+.+++++++.||++||+||++++|.+.+++.+... .+..+.++.++++...                    +++++|
T Consensus        10 ~~~~~~~v~i~~F~a~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~--------------------~l~~~~   69 (107)
T d1a8la2          10 IRNIDQDVRILVFVTPTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYP--------------------EWADQY   69 (107)
T ss_dssp             HTTCCSCEEEEEEECSSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCH--------------------HHHHHT
T ss_pred             HHhcCCCeEEEEEEcCccccchhhChhHHhhhhhhhhccCCcEEEEEecccccc--------------------cccccc
Confidence            4455667788889999999999999999999876543 3323556566655443                    567888


Q ss_pred             ccCCCCcc
Q 018266          116 GADAYPFT  123 (358)
Q Consensus       116 gi~~~P~~  123 (358)
                      +|.++|+.
T Consensus        70 ~V~~vPTi   77 (107)
T d1a8la2          70 NVMAVPKI   77 (107)
T ss_dssp             TCCSSCEE
T ss_pred             ccccceEE
Confidence            88888863

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.15  E-value=2.2e-11  Score=92.21  Aligned_cols=63  Identities=17%  Similarity=0.311  Sum_probs=46.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+|+|+|+||||||+||+++.|.|+++++.+...... ..+.+..+..                    ..++.+++|.+|
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~-~~~~~~~~~~--------------------~~~~~~~~v~~~   77 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFK-DRVVIAKVDA--------------------TANDVPDEIQGF   77 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCT-TSSEEEEEET--------------------TTSCCSSCCSSS
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhccccc-ceeEEEeccc--------------------chhhhcccccCC
Confidence            3689999999999999999999999999999765321 1122222211                    134678899999


Q ss_pred             Ccch
Q 018266          121 PFTR  124 (358)
Q Consensus       121 P~~~  124 (358)
                      |+..
T Consensus        78 Pti~   81 (116)
T d2djja1          78 PTIK   81 (116)
T ss_dssp             SEEE
T ss_pred             CEEE
Confidence            9753

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=2.3e-10  Score=87.30  Aligned_cols=74  Identities=9%  Similarity=0.063  Sum_probs=56.4

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      +.+.+||.|||+||++|+.  |.+.++++++.. ...++.+.-|.++...                  ...+..++++|+
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~-~~~~v~ia~Vd~~~~~------------------~~~n~~l~~~~~   76 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHK-ATKDLLIATVGVKDYG------------------ELENKALGDRYK   76 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHH-HCSSEEEEEEEECSST------------------TCTTHHHHHHTT
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHH-hCCCeEEEeccccccc------------------cccCHHHHHHhh
Confidence            4589999999999999994  899999998864 4466777777765310                  011578999998


Q ss_pred             C--CceeeEEEECCCCc
Q 018266          249 I--KGIPALVLIGPDGK  263 (358)
Q Consensus       249 v--~~~P~~~lid~~G~  263 (358)
                      |  +++||++++.+++.
T Consensus        77 i~~~~~PTi~~f~~g~~   93 (122)
T d2c0ga2          77 VDDKNFPSIFLFKGNAD   93 (122)
T ss_dssp             CCTTSCCEEEEESSSSS
T ss_pred             cccCCCCcEEEEeCCcc
Confidence            8  57999999955443

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=2.3e-11  Score=88.83  Aligned_cols=62  Identities=11%  Similarity=0.049  Sum_probs=51.0

Q ss_pred             ccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc
Q 018266           38 SSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        38 ~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi  117 (358)
                      ..++|.+.++.|+++|||||+.+.|.|++++....    ++.+..++++.+.                    +++.+|||
T Consensus        11 k~l~~~~~i~~F~s~~C~~C~~~~p~~~~~a~~~~----~i~~~~vd~~~~~--------------------~l~~~~~I   66 (96)
T d1hyua4          11 RDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNP----RIKHTAIDGGTFQ--------------------NEITERNV   66 (96)
T ss_dssp             HHCCSCEEEEEEECTTCSSHHHHHHHHHHHHHHCT----TEEEEEEETTTCH--------------------HHHHHTTC
T ss_pred             HhcCCCeEEEEEECCCCcchHHHHHHHHHHHHhCC----ceEEEEEecccch--------------------HHHhhccc
Confidence            34678899999999999999999999999987532    3778888777665                    57888999


Q ss_pred             CCCCcc
Q 018266          118 DAYPFT  123 (358)
Q Consensus       118 ~~~P~~  123 (358)
                      +++|+.
T Consensus        67 ~~vPt~   72 (96)
T d1hyua4          67 MGVPAV   72 (96)
T ss_dssp             CSSSEE
T ss_pred             ccccEE
Confidence            999974

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.1e-11  Score=92.50  Aligned_cols=72  Identities=17%  Similarity=0.317  Sum_probs=50.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      ..+++.+||+|+|+|||+||++|+.+.|.+.+..+..+.. .++.++.++++.+...                ...++++
T Consensus        15 ~~l~~~~gK~vlv~F~a~wC~~C~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~~----------------~~~l~~~   77 (117)
T d2fwha1          15 QALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKAL-ADTVLLQANVTANDAQ----------------DVALLKH   77 (117)
T ss_dssp             HHHHHHTTSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHT-TTSEEEEEECTTCCHH----------------HHHHHHH
T ss_pred             HHHHHcCCCeEEEEEecccCCcccccchhHHhHHHHHHhc-cceEEEecccccchhH----------------HHHHHhh
Confidence            4566678999999999999999999999984443332221 1255666666543321                1357889


Q ss_pred             cccCCCCcc
Q 018266          115 YGADAYPFT  123 (358)
Q Consensus       115 ~gi~~~P~~  123 (358)
                      |+|.++|+.
T Consensus        78 ~~v~~~Pt~   86 (117)
T d2fwha1          78 LNVLGLPTI   86 (117)
T ss_dssp             TTCCSSSEE
T ss_pred             hehhhceEE
Confidence            999999964

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.10  E-value=1.3e-11  Score=94.48  Aligned_cols=67  Identities=9%  Similarity=0.011  Sum_probs=51.5

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeecccc--C
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGA--D  118 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi--~  118 (358)
                      ++|++||+||||||+||+.  |.|.++++.+.....++.++.|+++....               ....+++.+|+|  +
T Consensus        18 ~~~~~lV~Fya~wC~~ck~--p~f~kla~~~~~~~~~v~ia~Vd~~~~~~---------------~~n~~l~~~~~i~~~   80 (122)
T d2c0ga2          18 RFPYSVVKFDIASPYGEKH--EAFTAFSKSAHKATKDLLIATVGVKDYGE---------------LENKALGDRYKVDDK   80 (122)
T ss_dssp             TSSEEEEEEEESSCCSHHH--HHHHHHHHHHHHHCSSEEEEEEEECSSTT---------------CTTHHHHHHTTCCTT
T ss_pred             cCCcEEEEEECCCCCcccC--HHHHHHHHHHHHhCCCeEEEecccccccc---------------ccCHHHHHHhhcccC
Confidence            4699999999999999994  99999999998776678888888863110               001368888988  4


Q ss_pred             CCCcch
Q 018266          119 AYPFTR  124 (358)
Q Consensus       119 ~~P~~~  124 (358)
                      +||+..
T Consensus        81 ~~PTi~   86 (122)
T d2c0ga2          81 NFPSIF   86 (122)
T ss_dssp             SCCEEE
T ss_pred             CCCcEE
Confidence            699754

>d2djja1 c.47.1.2 (A:6-121) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=99.09  E-value=4.2e-11  Score=90.63  Aligned_cols=67  Identities=21%  Similarity=0.342  Sum_probs=48.9

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCC-ceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHc
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANH-CFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIF  247 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~-~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  247 (358)
                      .+|+++|.||++||++|+.+.|.+.++++.+...... .+.+.....+                          .....+
T Consensus        19 ~~k~vlV~fya~wC~~Ck~~~p~~~~la~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~   72 (116)
T d2djja1          19 DTKDVLIEFYAPWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDAT--------------------------ANDVPD   72 (116)
T ss_dssp             TTSCEEEEEECSSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETT--------------------------TSCCSS
T ss_pred             CCCCEEEEEEecccccccccchHHHHHHHHHhcccccceeEEEecccc--------------------------hhhhcc
Confidence            4689999999999999999999999999999751111 1222223222                          223468


Q ss_pred             CCCceeeEEEECCCC
Q 018266          248 NIKGIPALVLIGPDG  262 (358)
Q Consensus       248 ~v~~~P~~~lid~~G  262 (358)
                      +|+++||++++ ++|
T Consensus        73 ~v~~~Pti~~f-~~g   86 (116)
T d2djja1          73 EIQGFPTIKLY-PAG   86 (116)
T ss_dssp             CCSSSSEEEEE-CSS
T ss_pred             cccCCCEEEEE-ECC
Confidence            99999999999 444

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.09  E-value=9.5e-11  Score=93.72  Aligned_cols=88  Identities=20%  Similarity=0.268  Sum_probs=66.9

Q ss_pred             ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh-------
Q 018266           28 LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS-------   98 (358)
Q Consensus        28 l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~-------   98 (358)
                      +.+.+|+ ++|++++||+|+|+|| +.||++|...++.|.+.++++.+.|  .+++.|+.|.. .+.+++...       
T Consensus        11 ~~~~~~~~vsL~d~~Gk~vVL~Fyp~~~tp~C~~e~~~~~~~~~~~~~~~--~~vigIS~d~~-~~~~~~~~~~~~~~~~   87 (158)
T d1zyea1          11 VVSGEFKEISLDDFKGKYLVLFFYPLDFTFVCPTEIIAFSDKASEFHDVN--CEVVAVSVDSH-FSHLAWINTPRKNGGL   87 (158)
T ss_dssp             ECSSSEEEEEGGGGTTSEEEEEECSCTTCSSSHHHHHHHHHHHHHHHHTT--EEEEEEESSCH-HHHHHHHTSCGGGTCC
T ss_pred             eeCCCccEEeHHHhCCCeEEEEEeehhcCCccccchhhHHHhHHHhhcCC--ceEEeccCcCH-HHHHHHHhhhHhhccc
Confidence            4466778 9999999999999999 8999999999999999999999988  89999999964 333333332       


Q ss_pred             --CCCcccccccceeeeccccC
Q 018266           99 --SDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        99 --~~~~~~~~~~~~l~~~~gi~  118 (358)
                        ....++.+....+++.||+.
T Consensus        88 ~~~~f~llsD~~~~~~~~ygv~  109 (158)
T d1zyea1          88 GHMNIALLSDLTKQISRDYGVL  109 (158)
T ss_dssp             CSCSSEEEECTTSHHHHHTTCE
T ss_pred             cccccccccccccHHHHHHHhc
Confidence              12244445455566666653

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.09  E-value=2.4e-11  Score=97.53  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             cCccc-ccCCCCc-eecccC--CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHh
Q 018266           23 EGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFK   97 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~   97 (358)
                      ..++| |.+.+|+ ++|+++  +||+++|.|| +.||++|...+|.+.++++++++.+  +.++.++.|. .....++..
T Consensus         7 ~aPdF~L~~~~G~~~~Lsd~~~~gk~vvl~f~~~~~cp~C~~~~~~l~~~~~~~~~~~--~~vv~is~d~-~~~~~~~~~   83 (160)
T d2cx4a1           7 KAPDFTLPNQDFEPVNLYEVLKRGRPAVLIFFPAAFSPVCTKELCTFRDKMAQLEKAN--AEVLAISVDS-PWCLKKFKD   83 (160)
T ss_dssp             BCCCCEECCTTSCCEEHHHHHTTSSCEEEEECSCTTCHHHHHHHHHHHHTCTTTSTTC--CEEEEEESSC-HHHHHHHHH
T ss_pred             CCcCeEeECCCCCEEehHHHhhCCCEEEEEecccccCCchhhhhhhhhcccccccccc--cccccccccc-hhhhhhhcc
Confidence            44567 8999999 999997  7999999999 9999999999999999999998887  8899999874 444444433


Q ss_pred             hC--CCcccccccceeeecccc
Q 018266           98 SS--DGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        98 ~~--~~~~~~~~~~~l~~~~gi  117 (358)
                      ..  ...++.+....+++.||+
T Consensus        84 ~~~~~~~~l~D~~~~~~~~~gv  105 (160)
T d2cx4a1          84 ENRLAFNLLSDYNREVIKLYNV  105 (160)
T ss_dssp             HHTCSSEEEECTTSHHHHHTTC
T ss_pred             cceeeEEEeecCCcchHHHcCc
Confidence            32  223444444455566655

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.3e-10  Score=94.38  Aligned_cols=65  Identities=26%  Similarity=0.415  Sum_probs=59.7

Q ss_pred             cCccc-ccCCCCc-eecccCCCCEEEEEEeCCCCh-hhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +.++| |++.+|+ +++++++||+|+|.||++||+ .|...++.|.++++.+.+.+.++.+++|++|.
T Consensus        10 ~~p~F~l~d~~G~~vsl~d~~Gk~vvl~F~~t~Cp~~C~~~~~~l~~~~~~~~~~~~~v~~v~isiDp   77 (172)
T d1xzoa1          10 EVEPFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAENIDVRIISFSVDP   77 (172)
T ss_dssp             ECCCCEEECTTSCEEETGGGTTCCEEEEEECSCCSSCCCSHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             cCCCeEEEcCCCCEEcHHHhCCCEEEEEEecccccccccccchhhhhhhhhhcccccccccccccccc
Confidence            34577 9999999 999999999999999999997 69999999999999998878789999999985

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=8e-11  Score=93.98  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=73.0

Q ss_pred             ccCccc-ccCCCCc-eecccC--CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHH
Q 018266           22 SEGVEF-LLSRQGK-VPLSSC--GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHF   96 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~--~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~   96 (358)
                      .+.++| |.+.+|+ ++|+++  +|++|+++|| +.||++|...++.|.+.+.++++.   ..++.|+.| +..+.+++.
T Consensus         9 ~~aP~f~L~~~~g~~~~l~~~~~k~~~vvlff~p~~~cp~C~~~~~~~~~~~~~~~~~---~~~~~is~d-~~~~~~~f~   84 (156)
T d2a4va1           9 DPIPDLSLLNEDNDSISLKKITENNRVVVFFVYPRASTPGSTRQASGFRDNYQELKEY---AAVFGLSAD-SVTSQKKFQ   84 (156)
T ss_dssp             CBCCSCEEECTTSCEEEHHHHHHHCSEEEEEECSSSSSHHHHHHHHHHHHHHHHHTTT---CEEEEEESC-CHHHHHHHH
T ss_pred             CCCCCeEEECCCCCEEeeHHHcCCccEEEEEecccccCcchhhhhHHHHHHHHHHhhc---cceeeeccc-hhhhHHhhh
Confidence            345567 9999999 999998  5778888888 899999999999999999999765   568889887 444555554


Q ss_pred             hhC--CCcccccccceeeeccccCCCC
Q 018266           97 KSS--DGTLIEEDLIGLIEDYGADAYP  121 (358)
Q Consensus        97 ~~~--~~~~~~~~~~~l~~~~gi~~~P  121 (358)
                      ...  ...++.+...++++.||+...|
T Consensus        85 ~~~~l~f~~L~D~~~~v~~~ygv~~~~  111 (156)
T d2a4va1          85 SKQNLPYHLLSDPKREFIGLLGAKKTP  111 (156)
T ss_dssp             HHHTCSSEEEECTTCHHHHHHTCBSSS
T ss_pred             cccCccceeccchHHHHHHHcCCCccc
Confidence            442  2255556566777778775554

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.08  E-value=1e-10  Score=96.52  Aligned_cols=92  Identities=22%  Similarity=0.298  Sum_probs=70.1

Q ss_pred             cCccc-----ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           23 EGVEF-----LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        23 ~~~~~-----l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +.++|     +.+.+|+ ++|++++||.|+|+|| +.||+.|...++.|.++++++++.+  ++|+.|+.|... +..++
T Consensus         8 PAPdFtl~a~l~d~~g~~vsLsd~~GK~vVL~FyP~~~t~~C~~E~~~f~~~~~~f~~~g--~~VlgIS~Ds~~-s~~~~   84 (194)
T d1uula_           8 PAPDFNETALMPNGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFSDRVKEFSDIG--CEVLACSMDSEY-SHLAW   84 (194)
T ss_dssp             BCCCCEEEEECTTSCEEEEEGGGGTTSEEEEEECSCTTCSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HHHHH
T ss_pred             CCCCCcccccccCCCCcEEehHHhCCCeEEEEEEeCCccccchhhhhHHHhhhhhhccCc--eEEEEEecCchh-hhhhh
Confidence            45666     5678888 9999999999999999 9999999999999999999999888  999999999532 22222


Q ss_pred             Hhh---------CCCcccccccceeeecccc
Q 018266           96 FKS---------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        96 ~~~---------~~~~~~~~~~~~l~~~~gi  117 (358)
                      ...         ....++.+...++++.||+
T Consensus        85 ~~~~~~~~~~~~l~fpllsD~~~~v~~~ygv  115 (194)
T d1uula_          85 TSIERKRGGLGQMNIPILADKTKCIMKSYGV  115 (194)
T ss_dssp             HHSCGGGTCCCSCSSCEEECTTCHHHHHHTC
T ss_pred             hhhhhhhccccCCCcceeeCCcchHHHHcCC
Confidence            221         1224445555566666665

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.06  E-value=1.2e-11  Score=94.86  Aligned_cols=62  Identities=10%  Similarity=0.051  Sum_probs=44.8

Q ss_pred             CCCEEEEEEeCCCChhh------hhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeec
Q 018266           41 GGKTICLFFSANWCRPC------KTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIED  114 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C------~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~  114 (358)
                      +++.++|+||||||+||      ..+.+.++.+++.+...+  +.++.|+++.+.                    .++.+
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~--v~~a~Vd~~~~~--------------------~l~~~   84 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKG--VGFGLVDSEKDA--------------------AVAKK   84 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGT--EEEEEEETTTSH--------------------HHHHT
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCC--eEEEEEEeeccc--------------------chhhc
Confidence            36889999999999975      344445555555555544  777777776554                    57999


Q ss_pred             cccCCCCcch
Q 018266          115 YGADAYPFTR  124 (358)
Q Consensus       115 ~gi~~~P~~~  124 (358)
                      |+|++||+..
T Consensus        85 ~~I~~yPTi~   94 (124)
T d1a8ya1          85 LGLTEEDSIY   94 (124)
T ss_dssp             TTCCSTTCEE
T ss_pred             cccccCCcEE
Confidence            9999999754

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.06  E-value=4.6e-10  Score=85.82  Aligned_cols=72  Identities=10%  Similarity=0.071  Sum_probs=51.9

Q ss_pred             CCcEEEEEEeccCCccc------HhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018266          169 AGKTIGLYFGAHWCPPC------RSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  242 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C------~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +.+.++|.||++||++|      ..+.+.+..+++.+..   .++.+..|+++..                       ..
T Consensus        27 ~~~~~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~---~~v~~a~Vd~~~~-----------------------~~   80 (124)
T d1a8ya1          27 KYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLED---KGVGFGLVDSEKD-----------------------AA   80 (124)
T ss_dssp             HCSEEEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGG---GTEEEEEEETTTS-----------------------HH
T ss_pred             hCCeEEEEEECCCccchhhhhHHHHHHHHHHHHHHHhcc---CCeEEEEEEeecc-----------------------cc
Confidence            45789999999999964      2333334444444433   5677777877764                       68


Q ss_pred             HHHHcCCCceeeEEEECCCCcEEec
Q 018266          243 LCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       243 l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ++++|+|+++||++++ ++|+++..
T Consensus        81 l~~~~~I~~yPTi~~f-~~g~~~~y  104 (124)
T d1a8ya1          81 VAKKLGLTEEDSIYVF-KEDEVIEY  104 (124)
T ss_dssp             HHHTTTCCSTTCEEEE-ESSSEEEC
T ss_pred             hhhccccccCCcEEEe-ccCccEEe
Confidence            9999999999999999 56776543

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.04  E-value=1.1e-10  Score=94.18  Aligned_cols=76  Identities=18%  Similarity=0.296  Sum_probs=59.8

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHH
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDL  243 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l  243 (358)
                      .+.+++++.+++.||++|||+|+.++|.|.+++++++     ++.+..|+.|.+                       ...
T Consensus        48 ~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~-----~~~~~~i~~d~~-----------------------~~~   99 (166)
T d1z6na1          48 RLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQP-----NIELAIISKGRA-----------------------EDD   99 (166)
T ss_dssp             HHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCT-----TEEEEEECHHHH-----------------------HHH
T ss_pred             HHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCC-----CCcEEEEECccC-----------------------HHH
Confidence            4567788999999999999999999999999998875     466777766643                       344


Q ss_pred             HHHc---CCCceeeEEEECCCCcEEec
Q 018266          244 CRIF---NIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       244 ~~~~---~v~~~P~~~lid~~G~v~~~  267 (358)
                      .+.|   +...+|.++++|.++....+
T Consensus       100 ~~~~~~~~~~~~p~~~~~d~~~~~~~~  126 (166)
T d1z6na1         100 LRQRLALERIAIPLVLVLDEEFNLLGR  126 (166)
T ss_dssp             TTTTTTCSSCCSSEEEEECTTCCEEEE
T ss_pred             HHHHHHhccccccceeecCccchhccc
Confidence            5555   44578889999999887755

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4e-10  Score=90.32  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=84.4

Q ss_pred             hhhccCCcee-c-CCCceeeeccc-CCcEEEEEEe-ccCCcccH-hhHHHHHHHHHHhhcccCCce-EEEEEeCCCCHHH
Q 018266          147 LAIEGRDYVL-S-RDHRKITVSEL-AGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCF-EVVLVSTDRDHKE  220 (358)
Q Consensus       147 ~~~~~p~f~l-~-~~g~~~~l~~~-~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~-~vv~v~~d~~~~~  220 (358)
                      +|.++|+|++ + .+|+.++++++ +||.|||+|| +.|+|.|. .+.+.+.+.++.+.+   .+. .|+.+++|.....
T Consensus         5 VGd~aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~---~g~~~i~~~s~~~~~~~   81 (161)
T d1hd2a_           5 VGDAIPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKA---KGVQVVACLSVNDAFVT   81 (161)
T ss_dssp             TTCBCCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHT---TTCCEEEEEESSCHHHH
T ss_pred             CCCcCCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHH---cCCeEEEEEecCchhhh
Confidence            5899999998 4 55789999986 7898888887 68999995 578888888888875   555 4556777754432


Q ss_pred             HHHhhhcCC-ccccccCchhHHHHHHHcCCC----c--------eeeEEEECCCCcEEec
Q 018266          221 FDLNHSIMP-WLAIPYEDRARQDLCRIFNIK----G--------IPALVLIGPDGKTIST  267 (358)
Q Consensus       221 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~----~--------~P~~~lid~~G~v~~~  267 (358)
                       ..+..... -..+++..|....+++.||+.    .        ....++|+.+|+|++.
T Consensus        82 -~~~~~~~~~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~  140 (161)
T d1hd2a_          82 -GEWGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKAL  140 (161)
T ss_dssp             -HHHHHHTTCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEE
T ss_pred             -hhhhhhcccccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEE
Confidence             23333222 246778888899999999873    1        2335566679999876

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.04  E-value=1.6e-10  Score=93.51  Aligned_cols=86  Identities=15%  Similarity=0.195  Sum_probs=64.7

Q ss_pred             CCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHHHHHhh---CCCc
Q 018266           30 SRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFEEHFKS---SDGT  102 (358)
Q Consensus        30 ~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~~~~~~---~~~~  102 (358)
                      +..|+ +++++++||.++|.|| +.|||+|...++.|.+.++++++.|  ++++.|+.|....  .+.+....   ....
T Consensus        31 ~~~~~~~~l~d~~GK~vvl~f~p~~~~p~C~~~~~~~~~~~~~~~~~g--~~vv~is~d~~~~~~~~~~~~~~~~~~~f~  108 (169)
T d2bmxa1          31 GDYFTTITSDEHPGKWRVVFFWPKDFTFVCPTEIAAFSKLNDEFEDRD--AQILGVSIDSEFAHFQWRAQHNDLKTLPFP  108 (169)
T ss_dssp             GGGEEEEETTSSTTCEEEEEECSCTTSCCCHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHHHHCTTGGGCCSC
T ss_pred             cccccEeeHHHHCCCeEEEEEecCCCCccccccccccccccccccccC--cceeeccccchhhhhhhcccccccccceEE
Confidence            34447 9999999999999999 9999999999999999999999988  8999999986332  22222211   2224


Q ss_pred             ccccccceeeecccc
Q 018266          103 LIEEDLIGLIEDYGA  117 (358)
Q Consensus       103 ~~~~~~~~l~~~~gi  117 (358)
                      ++.+...++++.||+
T Consensus       109 ll~D~~~~v~~~ygv  123 (169)
T d2bmxa1         109 MLSDIKRELSQAAGV  123 (169)
T ss_dssp             EEECTTSHHHHHHTC
T ss_pred             EEeccHHHHHHHcCC
Confidence            455555566777775

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.03  E-value=1.6e-11  Score=93.24  Aligned_cols=62  Identities=13%  Similarity=0.200  Sum_probs=46.8

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ...++|+|.|||+|||+|+.+.|.|.++++++.+..  +.++.|++|.+.                    +++++|||++
T Consensus        28 ~~~~~vll~f~a~wCp~C~~~~pvl~eL~~~~~~~~--~~~~~Vd~d~~~--------------------~l~~~~~V~~   85 (119)
T d2es7a1          28 VGDGVILLSSDPRRTPEVSDNPVMIAELLREFPQFD--WQVAVADLEQSE--------------------AIGDRFNVRR   85 (119)
T ss_dssp             CCSEEEEECCCSCC----CCHHHHHHHHHHTCTTSC--CEEEEECHHHHH--------------------HHHHTTTCCS
T ss_pred             CCCcEEEEeecCCCCccHHHHHHHHHHHHHhcCCCc--eEEEEEECCCCH--------------------HHHHhcCcCc
Confidence            346799999999999999999999999999986533  666666665433                    6899999999


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        86 ~Pt~   89 (119)
T d2es7a1          86 FPAT   89 (119)
T ss_dssp             SSEE
T ss_pred             ceEE
Confidence            9964

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=99.02  E-value=6.4e-12  Score=97.22  Aligned_cols=62  Identities=11%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCC
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADA  119 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~  119 (358)
                      ..+++|+|.|||+|||+|+.+.|.|.++++++.+..  +.++.|++|.+.                    +++++|+|.+
T Consensus        34 ~~~~vVll~f~a~wCp~C~~~~pvl~ela~~~~~~~--~~~a~Vd~d~~~--------------------~la~~~~V~~   91 (132)
T d2hfda1          34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYT--WQVAIADLEQSE--------------------AIGDRFGVFR   91 (132)
T ss_dssp             CSEEEEEECSCCSCCSSSSCCTHHHHHHHTTCTTSC--EEEEEECHHHHH--------------------HHHHHHTCCS
T ss_pred             CCCcEEEEEeeCCCChhHHHHHHHHHHHHHHccCCc--ceeEEEEecCCH--------------------HHHHhhccCc
Confidence            346899999999999999999999999999987754  666667666444                    5778888888


Q ss_pred             CCcc
Q 018266          120 YPFT  123 (358)
Q Consensus       120 ~P~~  123 (358)
                      +|+.
T Consensus        92 ~PT~   95 (132)
T d2hfda1          92 FPAT   95 (132)
T ss_dssp             CCEE
T ss_pred             ceeE
Confidence            8864

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.01  E-value=1.2e-10  Score=87.85  Aligned_cols=64  Identities=20%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      .+++++|+||++||+||+.+.|.|.+++++++..     +.+++++...+.              .....++++|+|.++
T Consensus        25 ~~~~~~v~f~~~~C~~C~~~~p~l~~~~~~~~~~-----v~~v~~~~~~~~--------------~~~~~~~~~~~V~~~   85 (115)
T d1zmaa1          25 KKETATFFIGRKTCPYCRKFAGTLSGVVAETKAH-----IYFINSEEPSQL--------------NDLQAFRSRYGIPTV   85 (115)
T ss_dssp             TTCCEEEEEECTTCHHHHHHHHHHHHHHHHHCCC-----CEEEETTCGGGH--------------HHHHHHHHHHTCCSS
T ss_pred             cCCCEEEEEcCCCCccHHHHHHHHHHHHHHhhhh-----hhhheeeccccc--------------ccccccccccccccc
Confidence            4789999999999999999999999999887543     566777643221              001245778888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus        86 PTl   88 (115)
T d1zmaa1          86 PGF   88 (115)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            864

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=6.4e-10  Score=87.44  Aligned_cols=96  Identities=14%  Similarity=0.242  Sum_probs=64.2

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHH---HHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHH
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQL---IEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQD  242 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +.-++|+++|+|+++||++|+.+....   .++.+.+.    .++.++.++.+...                     ...
T Consensus        38 Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~----~~fV~~~v~~~~~e---------------------~~~   92 (147)
T d2dlxa1          38 GQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIR----EHFIFWQVYHDSEE---------------------GQR   92 (147)
T ss_dssp             HHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHH----HTEEEEEEESSSHH---------------------HHH
T ss_pred             HHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHh----hheeEeeecccchh---------------------hhh
Confidence            344589999999999999999886533   33333333    44555556655432                     578


Q ss_pred             HHHHcCCCceeeEEEECC-CCcEEecCcchhhhhcCCCCCCCchhhHHHHHHHHHH
Q 018266          243 LCRIFNIKGIPALVLIGP-DGKTISTNGKEMISLYGAKAFPFTESRIAEIETALKK  297 (358)
Q Consensus       243 l~~~~~v~~~P~~~lid~-~G~v~~~~g~~~~~~~g~~~~p~~~~~~~~L~~~l~~  297 (358)
                      +++.|++.++|++++||+ +|+++..        +|..   ..++-+..|.+.+.+
T Consensus        93 ~~~~y~v~~~Pti~~idp~~ge~v~~--------~~~~---~~~~fl~~L~~fl~~  137 (147)
T d2dlxa1          93 YIQFYKLGDFPYVSILDPRTGQKLVE--------WHQL---DVSSFLDQVTGFLGE  137 (147)
T ss_dssp             HHHHHTCCSSSEEEEECTTTCCCCEE--------ESSC---CHHHHHHHHHHHHHH
T ss_pred             hhhheecCceeEEEEEeCCCCeEecc--------cCCC---CHHHHHHHHHHHHhh
Confidence            899999999999999997 5776533        3322   234445555555553

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=98.99  E-value=3.3e-10  Score=91.57  Aligned_cols=65  Identities=25%  Similarity=0.344  Sum_probs=57.2

Q ss_pred             ccCccc-ccCCCC-----c-eecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LLSRQG-----K-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~~~~g-----~-v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...++| |.+.+|     + ++|+++.|| +|+|+|| +.|||.|...++.|.+.++++++.+  ++++.|+.|..
T Consensus         5 ~~APdF~l~~~~g~~~~~~~~~Lsd~~gk~~vvl~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~Vvgis~d~~   78 (170)
T d1zofa1           5 KLAPDFKAPAVLGNNEVDEHFELSKNLGKNGVILFFWPKDFTFVCPTEIIAFDKRVKDFHEKG--FNVIGVSIDSE   78 (170)
T ss_dssp             SBCCCCEEEEECTTSCEEEEEETTTSCCSSEEEEEECSCTTCSSCCTHHHHHHHTHHHHHHTT--EEEEEEESSCH
T ss_pred             CcCCCcCcccccCCCccceEEEeHHHcCCCEEEEEEEccccCCcCHHHHHHHHHhHHhhccCC--eeEecccccch
Confidence            455677 777766     5 999999986 8999999 9999999999999999999999988  99999999864

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5e-10  Score=91.30  Aligned_cols=58  Identities=24%  Similarity=0.206  Sum_probs=53.3

Q ss_pred             ccCCC-Cc-eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           28 LLSRQ-GK-VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        28 l~~~~-g~-v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +.+.+ |+ ++|++++||+|||.|+|+||++|++..|.|++++++++++|  ++|+.+.++.
T Consensus         8 ~~~l~~g~~vsL~~ykGKvvLivN~AS~Cg~t~~~y~~L~~L~~ky~~~g--~~Il~fP~nq   67 (184)
T d2f8aa1           8 ARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRG--LVVLGFPCNQ   67 (184)
T ss_dssp             ECBTTCSSCEEGGGGTTSEEEEEEECSSSTTHHHHHHHHHHHHHHHGGGT--EEEEEEECCC
T ss_pred             EEECCCCCEecHHHcCCCEEEEEEecccCCcchhhhHHHHHhhhhhcccc--eeEEEeeccc
Confidence            66765 78 99999999999999999999999999999999999999998  9999998763

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.96  E-value=4e-10  Score=92.08  Aligned_cols=97  Identities=18%  Similarity=0.245  Sum_probs=73.2

Q ss_pred             ecccccCccc-ccC-CCC--c-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           18 TVLASEGVEF-LLS-RQG--K-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        18 ~~l~~~~~~~-l~~-~~g--~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ||+..+.++| +.+ .+|  . |++++++||.|+|+|| +.||+.|...++.|.+.++++.+.+  ++++.||.|. ..+
T Consensus         1 ~lIg~~aP~F~~~a~~~g~~~~vsLsd~kGk~vVL~FyP~~~tp~C~~e~~~f~~~~~~f~~~~--~~v~gIS~Ds-~~s   77 (186)
T d1n8ja_           1 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQKLG--VDVYSVSTDT-HFT   77 (186)
T ss_dssp             CCTTCBCCCCEEEEEETTEEEEEEHHHHTTSEEEEEECSCTTCSHHHHHHHHHHHHHHHHHHTT--EEEEEEESSC-HHH
T ss_pred             CCCCCcCCCCEeeeeeCCeeEEEeHHHhCCCeEEEEEEeccCCCccHHHHHHHHHhhhhccccc--EEEEeccccC-HHH
Confidence            4666677788 433 355  3 8999999999999999 8889999999999999999999887  8999999985 333


Q ss_pred             HHHHHhh------CCCcccccccceeeecccc
Q 018266           92 FEEHFKS------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        92 ~~~~~~~------~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+++...      ....++.+....+++.||+
T Consensus        78 h~~f~~~~~~~~~~~fpllsD~~~~v~~~yGv  109 (186)
T d1n8ja_          78 HKAWHSSSETIAKIKYAMIGDPTGALTRNFDN  109 (186)
T ss_dssp             HHHHHHHCTTGGGCCSEEEECTTSHHHHHTTC
T ss_pred             HHHHhccccccccccccccccHHHHHHHHhCC
Confidence            3333322      2234566666677777776

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.96  E-value=3e-10  Score=90.30  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=58.4

Q ss_pred             cCccc-ccCCCCc-eecccCCCC-EEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           23 EGVEF-LLSRQGK-VPLSSCGGK-TICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        23 ~~~~~-l~~~~g~-v~l~~~~gk-~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      +.++| |.+.+|+ ++|+++.|| ++++.|| +.|||+|...++.+.++++++...+  ++++.++.|. .....++...
T Consensus         7 ~aPdF~l~d~~G~~~slsd~~g~~~vvl~~~~~~~cp~C~~e~~~l~~~~~~~~~~~--~~vi~vs~d~-~~~~~~~~~~   83 (153)
T d1xvwa1           7 TAPDFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFENDD--SAALAISVGP-PPTHKIWATQ   83 (153)
T ss_dssp             BCCCCEEECTTSCEEEGGGGTTTCEEEEEECSCTTSSHHHHHHHHHHHTGGGTSSSS--EEEEEEESCC-HHHHHHHHHH
T ss_pred             CCcCeEEECCCCCEEeHHHHcCCCcEEEEecccccccchhhhhhhhhhhhhhhcccc--cccccccchh-hhHHHHHhhh
Confidence            45677 8999999 999999995 5555554 9999999999999999999998877  8999999875 4444455444

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=98.88  E-value=1.5e-09  Score=87.56  Aligned_cols=57  Identities=25%  Similarity=0.328  Sum_probs=52.2

Q ss_pred             CCCCc-eecccCCC-CEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           30 SRQGK-VPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        30 ~~~g~-v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      +.+|. |+|+++.| |+|+|+|| +.||+.|...++.|.+.++++++.|  ++++.|+.|..
T Consensus        13 d~~~~~vsL~d~~g~k~vVl~FyP~~~tp~Ct~e~~~f~~~~~~f~~~g--~~vigIS~D~~   72 (170)
T d2h01a1          13 DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALDSFKERN--VELLGCSVDSK   72 (170)
T ss_dssp             TSCEEEEEGGGGTTTCEEEEEECSCSSCSSCCHHHHHHHHTHHHHHHTT--EEEEEEESSCH
T ss_pred             CCCccEEehHHHCCCCeEEEEEECCCCCCccchhhHHHhhhhhhhhcCC--eeEecccCCcH
Confidence            56677 99999998 89999999 8999999999999999999999988  99999999953

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.6e-09  Score=86.95  Aligned_cols=63  Identities=24%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...++| |++.+|+ ++|++++||+++|.|| +.||++|...+|.|.+++.++.    +++++.|+.|..
T Consensus        22 ~~APdF~L~~~~g~~vsLsd~~GK~vvl~f~~~~~~p~C~~~~~~l~~~~~~~~----~~~vv~Is~d~~   87 (164)
T d1qxha_          22 SKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEID----NTVVLCISADLP   87 (164)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHTST----TEEEEEEESSCH
T ss_pred             CCCCCeEEECCCCCEEeHHHhCCCeEEEEEecchhcccchHHHHHHHHHHHhhc----cceeeeEEcCCH
Confidence            344577 9999999 9999999999999998 7799999999999998877653    388999999853

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=1e-09  Score=92.18  Aligned_cols=69  Identities=17%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      ++.+|+|.||++||++|+.+.|.|.+++.+|..     +.++-|..+.                        ..+...|+
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~-----vkF~ki~~~~------------------------~~~~~~~~  169 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM-----VKFCKIRASN------------------------TGAGDRFS  169 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT-----SEEEEEEHHH------------------------HTCSTTSC
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc-----ceEEEEcccc------------------------chhHHhCC
Confidence            356899999999999999999999999999864     5555554431                        22446799


Q ss_pred             CCceeeEEEECCCCcEEec
Q 018266          249 IKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~~P~~~lid~~G~v~~~  267 (358)
                      +.++||++++ ++|+++.+
T Consensus       170 i~~lPtl~~y-k~G~~v~~  187 (217)
T d2trcp_         170 SDVLPTLLVY-KGGELISN  187 (217)
T ss_dssp             GGGCSEEEEE-ETTEEEEE
T ss_pred             CCCCCeEEEE-ECCEEEEE
Confidence            9999999999 99998876

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.82  E-value=3.2e-09  Score=89.66  Aligned_cols=96  Identities=19%  Similarity=0.263  Sum_probs=72.8

Q ss_pred             ccccCccc-ccCCCCceecccC---CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHH
Q 018266           20 LASEGVEF-LLSRQGKVPLSSC---GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGF   92 (358)
Q Consensus        20 l~~~~~~~-l~~~~g~v~l~~~---~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~   92 (358)
                      +....++| +.+.+|++++++.   +||.++|+|| +.||+.|...++.|.++++++++.|  ++++.||+|...  ..+
T Consensus         3 IGd~aPdF~l~t~~G~i~~~d~~~~kGk~vVLff~P~dftpvCttEl~~~~~~~~ef~~~g--~~vigiS~Ds~~sh~~w   80 (237)
T d2zcta1           3 IGERFPEMEVTTDHGVIKLPDHYVSQGKWFVLFSHPADFTPVCTTEFVSFARRYEDFQRLG--VDLIGLSVDSVFSHIKW   80 (237)
T ss_dssp             TTSBCCCEEEEETTEEEEETHHHHTTTCEEEEEEESCSSCHHHHHHHHHHHHTHHHHHHTT--EEEEEEESSCHHHHHHH
T ss_pred             CCCCCCCeEEEcCCCCEEechHhhcCCCEEEEEEECCCCCccCHHHHHHHHhhhhhhccCC--cceeeccCCcHHHHHHH
Confidence            45566777 8888898666664   7999999999 9999999999999999999999998  999999999632  233


Q ss_pred             HHHHhh-----CCCcccccccceeeecccc
Q 018266           93 EEHFKS-----SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        93 ~~~~~~-----~~~~~~~~~~~~l~~~~gi  117 (358)
                      .+....     ....++.+....+++.||+
T Consensus        81 ~~~~~~~~~~~l~fpllsD~~~~vak~yGv  110 (237)
T d2zcta1          81 KEWIERHIGVRIPFPIIADPQGTVARRLGL  110 (237)
T ss_dssp             HHHHHHHHCCCCCSCEEECGGGHHHHHTTC
T ss_pred             hhhhhhhcccccccccccCcchHHHHHcCC
Confidence            332221     2224556666677777776

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.3e-09  Score=88.82  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=73.6

Q ss_pred             cccCccc-ccCCCCceecccCCC-CEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh--hHHHHH
Q 018266           21 ASEGVEF-LLSRQGKVPLSSCGG-KTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE--NGFEEH   95 (358)
Q Consensus        21 ~~~~~~~-l~~~~g~v~l~~~~g-k~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~--~~~~~~   95 (358)
                      ....++| |.+.+|+++|+++.| |+++|+|| +.||+.|...++.|.+.++++.+.+  ++++.||+|...  ..+.+.
T Consensus         4 Gd~APdF~l~~~~G~v~Lsd~~g~k~vVLfFyP~dftpvC~~El~~~~~~~~~f~~~g--~~v~giS~Ds~~sh~~~~~~   81 (220)
T d1prxa_           4 GDVAPNFEANTTVGRIRFHDFLGDSWGILFSHPRDFTPVCTTELGRAAKLAPEFAKRN--VKLIALSIDSVEDHLAWSKD   81 (220)
T ss_dssp             TCBCCCCEEEETTEEEEHHHHHTTSEEEEEEESCSSCHHHHHHHHHHHHHHHHHHTTT--EEEEEEESSCHHHHHHHHHH
T ss_pred             CCCCCCcEeecCCCCEEeHHHcCCCeEEEEEECCCCCCcchhhHHHHHHHHHHhhccc--ceeeccccccccchhhhhhh
Confidence            3556777 888888899999987 79999999 7899999999999999999999988  999999999632  223222


Q ss_pred             Hhh---------CCCcccccccceeeeccccC
Q 018266           96 FKS---------SDGTLIEEDLIGLIEDYGAD  118 (358)
Q Consensus        96 ~~~---------~~~~~~~~~~~~l~~~~gi~  118 (358)
                      ...         ....++.+...++++.||+.
T Consensus        82 ~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~  113 (220)
T d1prxa_          82 INAYNSEEPTEKLPFPIIDDRNRELAILLGML  113 (220)
T ss_dssp             HHHHTTSCCCSCCSSCEEECTTCHHHHHTTSS
T ss_pred             hhhccccccccCcccccccCcccHHHHHhCCc
Confidence            211         22355666666777777763

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=4.7e-09  Score=86.42  Aligned_cols=94  Identities=26%  Similarity=0.317  Sum_probs=70.2

Q ss_pred             cccCccc-c---cCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHH
Q 018266           21 ASEGVEF-L---LSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEE   94 (358)
Q Consensus        21 ~~~~~~~-l---~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~   94 (358)
                      ..+.++| |   .+.+|. ++|++++||.++|+|| +.||+.|...+..|.+.++++++.|  .+++.||.|... +..+
T Consensus         8 G~~AP~F~l~~~~d~~~~~v~L~d~~Gk~~vL~FyP~~~tp~C~~e~~~~~~~~~~f~~~g--~~vigIS~D~~~-~~~~   84 (197)
T d1qmva_           8 GKPAPDFKATAVVDGAFKEVKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSNRAEDFRKLG--CEVLGVSVDSQF-THLA   84 (197)
T ss_dssp             TSBCCCCEEEEEETTEEEEEEGGGGTTSEEEEEECSCTTSSHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHH-HHHH
T ss_pred             CCcCCCCCCcceeCCCCcEEeHHHhCCCeEEEEEecccccccchhhhHHHHHHHHHhccCC--cEEEEEecCCHH-HHHh
Confidence            3455666 3   466778 9999999999999999 9999999999999999999999988  999999999533 3333


Q ss_pred             HHhh---------CCCcccccccceeeecccc
Q 018266           95 HFKS---------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        95 ~~~~---------~~~~~~~~~~~~l~~~~gi  117 (358)
                      +...         ....++.+...++++.||+
T Consensus        85 ~~~~~~~~~~~~~~~fpll~D~~~~va~~ygv  116 (197)
T d1qmva_          85 WINTPRKEGGLGPLNIPLLADVTRRLSEDYGV  116 (197)
T ss_dssp             HHTSCGGGTCCCSCSSCEEECTTCHHHHHTTC
T ss_pred             hhcchhhhcCcCCCccceEeccchHHHHHhCC
Confidence            3222         1224455555555666654

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.78  E-value=3.4e-09  Score=84.95  Aligned_cols=63  Identities=21%  Similarity=0.218  Sum_probs=53.6

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ...++| |.+.+|+ ++|++++||+++|.|| +.|||.|...++.|.+.+.++.  +  ..++.|+.|..
T Consensus        20 ~~aPdF~L~~~~g~~vsLsd~~gk~~vl~f~~~~~~p~C~~~~~~l~~~~~~~~--~--~~vv~Is~d~~   85 (163)
T d1psqa_          20 DKALDFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQTRRFNEELAGLD--N--TVVLTVSMDLP   85 (163)
T ss_dssp             SBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCTTSHHHHHHHHHHHHHTTTCT--T--EEEEEEESSCH
T ss_pred             CCCCCeEEECCCCCEEehHHhCCcEEEEEeccccccccchhhHHHHHHHHHhhc--c--cceEEEEeccH
Confidence            445577 9999999 9999999999999999 7799999999999988777664  2  78999998853

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.77  E-value=1.2e-09  Score=87.93  Aligned_cols=60  Identities=17%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhh
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKS   98 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~   98 (358)
                      -.++.++++++++.||++|||||+..+|.+.++++++.+    +.+..|+.|.+++...++...
T Consensus        47 ~~l~~~~~~~~~l~~~~tWC~~C~~~~P~l~~l~~~~~~----~~~~~i~~d~~~~~~~~~~~~  106 (166)
T d1z6na1          47 ERLQRIERRYRLLVAGEMWCPDCQINLAALDFAQRLQPN----IELAIISKGRAEDDLRQRLAL  106 (166)
T ss_dssp             HHHHTCCSCEEEEEECCTTCHHHHHHHHHHHHHHHHCTT----EEEEEECHHHHHHHTTTTTTC
T ss_pred             HHHHHhcCCeEEEEEEeCcCccHHHHHHHHHHHHHHCCC----CcEEEEECccCHHHHHHHHHh
Confidence            557778899999999999999999999999999887643    778888888766665555444

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=98.70  E-value=1.7e-08  Score=80.61  Aligned_cols=117  Identities=18%  Similarity=0.218  Sum_probs=83.2

Q ss_pred             hhhccCCcee-----cCCCceeeeccc-CCcEEEEEEe-ccCCcccH-hhHHHHHHHHHHhhcccCCceEEEEEeCCCCH
Q 018266          147 LAIEGRDYVL-----SRDHRKITVSEL-AGKTIGLYFG-AHWCPPCR-SFTSQLIEVYNELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       147 ~~~~~p~f~l-----~~~g~~~~l~~~-~~k~vlv~F~-a~wC~~C~-~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      +|.++|+|++     +..+++++++++ +||.|+|+|| ..|++.|. +..+......+.+..  ....+|+.|++|.. 
T Consensus         6 vGd~~Pdf~l~~~~~~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~--~g~~~v~~isvd~~-   82 (162)
T d1tp9a1           6 VGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKS--KGVTEILCISVNDP-   82 (162)
T ss_dssp             TTCBCCCCEEEEECTTSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHH--TTCCCEEEEESSCH-
T ss_pred             CCCCCCCeEEEeecCCCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHH--cCCcceeeeeccch-
Confidence            6899999997     233467889874 8998888877 78999995 566777777777664  13356888888754 


Q ss_pred             HHHHHhhhcCC-ccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMP-WLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~  267 (358)
                      .....+....+ ...++...|....+++.||+.           .....++|| +|+|++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~  142 (162)
T d1tp9a1          83 FVMKAWAKSYPENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAA  142 (162)
T ss_dssp             HHHHHHHHTCTTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEE
T ss_pred             hhhhhhhhhcccccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEE
Confidence            33333333333 245777788888999999863           125678888 8999876

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.2e-08  Score=81.06  Aligned_cols=62  Identities=24%  Similarity=0.461  Sum_probs=51.4

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCCh-hhhhhhHHHHHHHHHHhcCCC--ceEEEEEEecC
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCR-PCKTFTPQLVQLYDTLRTRGT--ELEVIFISFDH   87 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~-~C~~~~p~~~~~~~~l~~~~~--~~~iv~i~~d~   87 (358)
                      || |++.+|+ |++++++||++||.||++||+ .|....+.+.++.+++...+.  .+.+..++.+.
T Consensus         2 dF~L~d~~G~~vsl~d~~GK~vll~F~~t~C~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   68 (160)
T d1wp0a1           2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDP   68 (160)
T ss_dssp             CCEEEETTSCEEEGGGGTTSEEEEEEECTTCSSHHHHHHHHHHHHHHHHHHCTTSCCEEEEEEESCT
T ss_pred             CeEEEcCCCCEEcHHHhCCCEEEEEEECCCCccccccchHHHHHHHHHhhcccccccccccccccCC
Confidence            34 8999999 999999999999999999997 599999999999999876553  34555555543

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=9.3e-09  Score=75.06  Aligned_cols=65  Identities=15%  Similarity=0.252  Sum_probs=47.6

Q ss_pred             CcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCC
Q 018266          170 GKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNI  249 (358)
Q Consensus       170 ~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v  249 (358)
                      .-++|+.||++||++|....+.|.++..+|.        +..+.+|.+.                     +..+.++|++
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~~~--------~~~v~vd~~~---------------------~~~l~~~y~~   65 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDRFI--------LQEVDITLPE---------------------NSTWYERYKF   65 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSSSE--------EEEEETTSST---------------------THHHHHHSSS
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhhcc--------eEEEeccccc---------------------CHHHHHHhcc
Confidence            3578889999999999999998877754443        4445555443                     4789999998


Q ss_pred             CceeeEEEECCCCcEEec
Q 018266          250 KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       250 ~~~P~~~lid~~G~v~~~  267 (358)
                      + +|++++   +|+.+..
T Consensus        66 ~-VPvl~i---dg~~~~~   79 (100)
T d1wjka_          66 D-IPVFHL---NGQFLMM   79 (100)
T ss_dssp             S-CSEEEE---SSSEEEE
T ss_pred             c-CCceee---cCceEEe
Confidence            7 997654   5666543

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.66  E-value=2.3e-08  Score=80.22  Aligned_cols=63  Identities=19%  Similarity=0.158  Sum_probs=51.7

Q ss_pred             cccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           21 ASEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        21 ~~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ....++| |.+.+|+ ++|++++||+++|.|| +.|||.|...+|.|.+.++   +.|  .+++.|+.|..
T Consensus        20 G~~aP~F~L~~~~g~~v~L~d~~Gk~vvl~f~~~~~~p~C~~e~~~l~~~~~---~~g--~~vv~Is~d~~   85 (166)
T d1xvqa_          20 GSPAPAFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATSVRTFDERAA---ASG--ATVLCVSKDLP   85 (166)
T ss_dssp             TSBCCCCEEECTTSCEEEGGGGTTSCEEEEECSCCCSSCCCHHHHHHHHHHH---HTT--CEEEEEESSCH
T ss_pred             cCCCCCeEEECCCCCEEehHHhCCcEEEEEeeecccccccHHHHHHHhhhcc---ccc--ccccccccchH
Confidence            3556677 9999999 9999999999999999 5588889999888866554   445  78999998853

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=98.66  E-value=2.9e-08  Score=79.32  Aligned_cols=118  Identities=14%  Similarity=0.138  Sum_probs=79.1

Q ss_pred             hhhhccCCcee-cCCC---ceeeeccc-CCcEEEEEEe-ccCCcccHhhHHHHHHHHH-HhhcccCCceEEEEEeCCCCH
Q 018266          146 LLAIEGRDYVL-SRDH---RKITVSEL-AGKTIGLYFG-AHWCPPCRSFTSQLIEVYN-ELKTTANHCFEVVLVSTDRDH  218 (358)
Q Consensus       146 ~~~~~~p~f~l-~~~g---~~~~l~~~-~~k~vlv~F~-a~wC~~C~~~~~~l~~l~~-~~~~~~~~~~~vv~v~~d~~~  218 (358)
                      +.|.++|+|++ ...|   +.++++++ +||.|||+|+ +.+.|.|..+...+..... .+.. ...+ .++.++++ +.
T Consensus         2 ~~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~-~~~~-~vv~~~s~-d~   78 (163)
T d1nm3a2           2 MEGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKK-YGVD-DILVVSVN-DT   78 (163)
T ss_dssp             CTTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHH-TTCC-EEEEEESS-CH
T ss_pred             CCCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhh-hccc-ceeeeecC-CH
Confidence            56899999998 4444   46889996 8888877775 6888999988765544433 3322 1122 34455444 33


Q ss_pred             HHHHHhhhcCCccccccCchhHHHHHHHcCCC-----------ceeeEEEECCCCcEEec
Q 018266          219 KEFDLNHSIMPWLAIPYEDRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~  267 (358)
                      .....+...+....+++..|....+++.|++.           .....+|+| +|+|++.
T Consensus        79 ~~~~a~~~~~~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~  137 (163)
T d1nm3a2          79 FVMNAWKEDEKSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKM  137 (163)
T ss_dssp             HHHHHHHHHTTCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEE
T ss_pred             HHHHHHhhhhccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEE
Confidence            33444444444456788888888999998762           445689998 9999876

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.3e-09  Score=84.50  Aligned_cols=50  Identities=12%  Similarity=0.506  Sum_probs=36.4

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +..+..+||+|+|+|||+||++|+.++|.+.+..+..+. ..++  |.|++|.
T Consensus        18 l~~A~~~~Kpvlv~F~a~wC~~C~~~~~~~~~~~~~~~~-~~~f--v~v~vd~   67 (135)
T d1sena_          18 KKEAAASGLPLMVIIHKSWCGACKALKPKFAESTEISEL-SHNF--VMVNLED   67 (135)
T ss_dssp             HHHHHHHTCCEEEEEECTTCHHHHHHHHHHHTCHHHHHH-HTTS--EEEEEEG
T ss_pred             HHHHHHcCCcEEEEEEecCCCCceecchhhhhhHHHHHh-cCCc--EEEeCCC
Confidence            555666799999999999999999999999776554332 2234  4555543

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=98.62  E-value=2.8e-08  Score=79.49  Aligned_cols=64  Identities=22%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             ccCccc-ccCCCCc-eecccCCCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           22 SEGVEF-LLSRQGK-VPLSSCGGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        22 ~~~~~~-l~~~~g~-v~l~~~~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ...++| |.+.+|+ ++|++++||.++|.|| +.||+.|...++.|.+.+++++  +  ..++.|++|...
T Consensus        20 ~~APdF~L~d~~g~~v~Lsd~~Gk~vVL~f~p~~~tp~C~~e~~~~~~~~~~~~--~--~~vi~iS~d~~~   86 (164)
T d1q98a_          20 EIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAAKLS--N--TIVLCISADLPF   86 (164)
T ss_dssp             CBCCCCEEECTTSCEEEGGGGTTSEEEEEECSCSCSSCCCHHHHHHHHHHHHST--T--EEEEEEESSCHH
T ss_pred             CCCCCcEEECCCCCEEeehhhCCcEEEEEecCccccCcccHHHHHHHHHHHHhc--c--ceEEeecCCcHH
Confidence            445577 9999999 9999999999999999 5588889999999999999885  3  789999998643

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.7e-08  Score=75.98  Aligned_cols=68  Identities=12%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHH---HHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCccccccccee
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQL---VQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGL  111 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~---~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l  111 (358)
                      ...+..++|+|||+|+++||++|+.|....   .++.+.++++   +-++.++.+.++.                  ..+
T Consensus        35 ~~~Ak~~~K~llV~~~~~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~------------------~~~   93 (147)
T d2dlxa1          35 KECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEG------------------QRY   93 (147)
T ss_dssp             HHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHH------------------HHH
T ss_pred             HHHHHHcCCcEEEEEecCCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhh------------------hhh
Confidence            666667899999999999999999998855   5566656555   5555555554332                  356


Q ss_pred             eeccccCCCCcc
Q 018266          112 IEDYGADAYPFT  123 (358)
Q Consensus       112 ~~~~gi~~~P~~  123 (358)
                      +++|++.++|+.
T Consensus        94 ~~~y~v~~~Pti  105 (147)
T d2dlxa1          94 IQFYKLGDFPYV  105 (147)
T ss_dssp             HHHHTCCSSSEE
T ss_pred             hhheecCceeEE
Confidence            788888888853

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.48  E-value=1.6e-07  Score=71.02  Aligned_cols=69  Identities=13%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEe---CCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVS---TDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~---~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      +++.++|.|+++||..|..  |.+.++++++.+  ..+.-+--|.   +|.+.                     +..++.
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~--~~~~~~~~V~~~~vd~~~---------------------n~~l~~   74 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSAS--SDDLLVAEVGISDYGDKL---------------------NMELSE   74 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGG--CSSEEEEEEESCCTTSCH---------------------HHHHHH
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHH--HHHHhhhccceeeccccc---------------------cHHHHH
Confidence            4689999999999988764  789999999975  1232222243   34443                     577888


Q ss_pred             HcC--CCceeeEEEECCCCc
Q 018266          246 IFN--IKGIPALVLIGPDGK  263 (358)
Q Consensus       246 ~~~--v~~~P~~~lid~~G~  263 (358)
                      +|+  |.++||++++ ++|+
T Consensus        75 ~~~~~I~~yPTi~~f-~~G~   93 (122)
T d1g7ea_          75 KYKLDKESYPVFYLF-RDGD   93 (122)
T ss_dssp             HHTCSSSSCEEEEEE-ESSC
T ss_pred             hhcccccCCCeEEEE-ecCc
Confidence            765  7799999999 5553

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=98.47  E-value=1.1e-07  Score=79.02  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=69.4

Q ss_pred             cccCccc-ccCC--CCceecccC-CCCEEEEEEe-CCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh--HHH
Q 018266           21 ASEGVEF-LLSR--QGKVPLSSC-GGKTICLFFS-ANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN--GFE   93 (358)
Q Consensus        21 ~~~~~~~-l~~~--~g~v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~--~~~   93 (358)
                      ....++| +.++  +|+++++++ +||+++|+|| +.||+.|...+..|.+.++++++.|  .+++.||+|....  .|.
T Consensus         5 Gd~aPdF~l~~~~~~g~i~l~d~~~gk~vVLfFyP~dfTpvCttEl~~f~~~~~eF~~~~--~~vigiS~Ds~~sh~~w~   82 (219)
T d1xcca_           5 GATFPNFTAKASGIDGDFELYKYIENSWAILFSHPNDFTPVCTTELAELGKMHEDFLKLN--CKLIGFSCNSKESHDKWI   82 (219)
T ss_dssp             TCBCCCCEECBTTCSSCEEHHHHTTTSEEEEECCSCTTCHHHHHHHHHHHHTHHHHHTTT--EEEEEEESSCHHHHHHHH
T ss_pred             CCCCCCcEeeccCCCCcEEeHHHcCCCeEEEEEEcCCCCcccchhHHHHHHhhhhhcccc--eEEEeecCccHhHHhHHh
Confidence            3455677 5555  345999995 8999999999 9999999999999999999999988  9999999996321  222


Q ss_pred             HHHhh------CCCcccccccceeeecccc
Q 018266           94 EHFKS------SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        94 ~~~~~------~~~~~~~~~~~~l~~~~gi  117 (358)
                      +....      ....++.+...++++.||+
T Consensus        83 ~~~~~~~~~~~l~fpllsD~~~~va~~ygv  112 (219)
T d1xcca_          83 EDIKYYGKLNKWEIPIVCDESRELANKLKI  112 (219)
T ss_dssp             HHHHHHHTCSCCCCCEEECTTSHHHHHHTC
T ss_pred             hhhHhhcccCCCCcccccccccHHHHHhCC
Confidence            22211      2335556666666666665

>d1g7ea_ c.47.1.7 (A:) Endoplasmic reticulum protein ERP29, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Endoplasmic reticulum protein ERP29, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.46  E-value=3.7e-08  Score=74.65  Aligned_cols=63  Identities=19%  Similarity=0.286  Sum_probs=45.1

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEE---EecCChhHHHHHHhhCCCcccccccceeeeccc-
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFI---SFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYG-  116 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i---~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-  116 (358)
                      ++|++||+||+|||.+|..  |.+.++++.+.+... .-+..|   ++|++++                  ..++.+|+ 
T Consensus        20 ~~~~~lV~F~~~wc~~~~~--~~~~~la~~~~~~~~-~~~~~V~~~~vd~~~n------------------~~l~~~~~~   78 (122)
T d1g7ea_          20 KSKFVLVKFDTQYPYGEKQ--DEFKRLAENSASSDD-LLVAEVGISDYGDKLN------------------MELSEKYKL   78 (122)
T ss_dssp             GSSEEEEEEECSSCCTTTT--HHHHHHHHHGGGCSS-EEEEEEESCCTTSCHH------------------HHHHHHHTC
T ss_pred             hCCeEEEEEecCCcCcccC--HHHHHHHHHHHHHHH-Hhhhccceeecccccc------------------HHHHHhhcc
Confidence            4799999999999998864  899999999987643 222223   3455544                  35676654 


Q ss_pred             -cCCCCcch
Q 018266          117 -ADAYPFTR  124 (358)
Q Consensus       117 -i~~~P~~~  124 (358)
                       |.+||+..
T Consensus        79 ~I~~yPTi~   87 (122)
T d1g7ea_          79 DKESYPVFY   87 (122)
T ss_dssp             SSSSCEEEE
T ss_pred             cccCCCeEE
Confidence             77899754

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.18  E-value=2.8e-07  Score=76.89  Aligned_cols=58  Identities=17%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHHHhhCCCcccccccceeeeccccCCC
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEHFKSSDGTLIEEDLIGLIEDYGADAY  120 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~~~  120 (358)
                      ++.+|+|.||++||++|+.+.|.|.+++.++..    +.++.|+.+  ..                   .++.+|++.+.
T Consensus       119 ~~~~Vvvhfy~~~~~~C~~~~~~l~~lA~~~~~----vkF~ki~~~--~~-------------------~~~~~~~i~~l  173 (217)
T d2trcp_         119 KVTTIVVNIYEDGVRGCDALNSSLECLAAEYPM----VKFCKIRAS--NT-------------------GAGDRFSSDVL  173 (217)
T ss_dssp             TTCEEEEEEECTTSTTHHHHHHHHHHHHTTCTT----SEEEEEEHH--HH-------------------TCSTTSCGGGC
T ss_pred             CCCeEEEEEEcCCCCChhhhhhhHHHHhhhccc----ceEEEEccc--cc-------------------hhHHhCCCCCC
Confidence            456899999999999999999999999887743    556666554  21                   24677888888


Q ss_pred             Ccc
Q 018266          121 PFT  123 (358)
Q Consensus       121 P~~  123 (358)
                      |+.
T Consensus       174 Ptl  176 (217)
T d2trcp_         174 PTL  176 (217)
T ss_dssp             SEE
T ss_pred             CeE
Confidence            863

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=9e-07  Score=70.00  Aligned_cols=62  Identities=24%  Similarity=0.348  Sum_probs=47.2

Q ss_pred             cc-ccCCCCc-eecccCCCCEEEEEEeCCCChh-hhhhhHHHHHHHHHHhcCC-CceEEEEEEecC
Q 018266           26 EF-LLSRQGK-VPLSSCGGKTICLFFSANWCRP-CKTFTPQLVQLYDTLRTRG-TELEVIFISFDH   87 (358)
Q Consensus        26 ~~-l~~~~g~-v~l~~~~gk~vlv~F~a~wC~~-C~~~~p~~~~~~~~l~~~~-~~~~iv~i~~d~   87 (358)
                      || |++.+|+ |++++++||+++|.||.+||+. |......+..+.+.+...+ ..+.+..+..+.
T Consensus         8 dF~l~d~~G~~vsl~~~~GK~vli~f~~t~c~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (169)
T d2b7ka1           8 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDP   73 (169)
T ss_dssp             CCEEEETTSCEEEGGGGTTSCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEEESCT
T ss_pred             CeEEEeCCCCEECHHHHCCCEEEEEEeccccCCcccchhhhhhhhhhhccccccccceeeeecccc
Confidence            66 9999999 9999999999999999999986 7777777766666664432 225566665553

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.09  E-value=1.4e-05  Score=62.75  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             eecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC--C-CH----------------HHHHHh
Q 018266          164 TVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--R-DH----------------KEFDLN  224 (358)
Q Consensus       164 ~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~-~~----------------~~~~~~  224 (358)
                      .+..-.+|.+++.|+.+.||+|+++.|.+.++.+       .++.++++..-  . ..                ..+...
T Consensus        20 v~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~-------~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~   92 (156)
T d1eeja1          20 VYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA-------LGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDV   92 (156)
T ss_dssp             EECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH-------TTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             eecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc-------cCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHH
Confidence            3333456899999999999999999999888743       33455555432  1 11                111111


Q ss_pred             hhcCC--ccccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          225 HSIMP--WLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       225 ~~~~~--~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                      .....  .....-....+..+++.+||+++|++++  .+|+++
T Consensus        93 ~~~~~~~~~~~~~~i~~~~~la~~lgv~GTPt~~~--~nG~~v  133 (156)
T d1eeja1          93 MAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVL--SNGTLV  133 (156)
T ss_dssp             HTTCCCCCCCCSCCHHHHHHHHHHHTCCSSSEEEC--TTSCEE
T ss_pred             HhccccchhhhcchHHHHHHHHHHcCCcCCCEEEE--eCCeEe
Confidence            11111  1111223345678999999999999765  467765

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=2.4e-05  Score=62.09  Aligned_cols=99  Identities=12%  Similarity=0.132  Sum_probs=63.4

Q ss_pred             eeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCC---C-------------HHHHHHhhh
Q 018266          163 ITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDR---D-------------HKEFDLNHS  226 (358)
Q Consensus       163 ~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~---~-------------~~~~~~~~~  226 (358)
                      +....-..+.+|+.|+.+.||+|+++.+.+.++.++      .++.|+++.+.-   +             ...+.....
T Consensus        29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~------~~v~v~~~~~~~~~~~s~~~a~a~~~a~~~~~~~~~~~  102 (169)
T d1v58a1          29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS------GKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYE  102 (169)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT------TSEEEEEEECCCSSTTHHHHHHHHHHSSSHHHHHHHHH
T ss_pred             ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc------cceeEEEEecccCCcchHHHHHHHHhhhCHHHHHHHHH
Confidence            333333457889999999999999999998887654      447788876631   1             112222221


Q ss_pred             cCC---ccccc-cC-------chhHHHHHHHcCCCceeeEEEECCCCcEEec
Q 018266          227 IMP---WLAIP-YE-------DRARQDLCRIFNIKGIPALVLIGPDGKTIST  267 (358)
Q Consensus       227 ~~~---~~~~~-~~-------~~~~~~l~~~~~v~~~P~~~lid~~G~v~~~  267 (358)
                      ...   -...+ ..       .+.+..+++.+|++++|++++.|++|++...
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~i~~n~~~a~~~gi~gTPt~i~~~~~g~~~~~  154 (169)
T d1v58a1         103 ASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQA  154 (169)
T ss_dssp             HTTTCCCCCCCSSCCHHHHHHHHHHHHHHHHHTCCSSCEEEEEETTTEEEEE
T ss_pred             HhhhcccccccchhhHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEEe
Confidence            110   00111 11       1234578889999999999999999987654

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=4.1e-06  Score=66.19  Aligned_cols=91  Identities=21%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             Cccc-ccC-CCCc-eecccC-CCCEEEEEEe-CCCChhh-hhhhHHHHHHHHHHhcCCCceEEE-EEEecCChhHHHHHH
Q 018266           24 GVEF-LLS-RQGK-VPLSSC-GGKTICLFFS-ANWCRPC-KTFTPQLVQLYDTLRTRGTELEVI-FISFDHDENGFEEHF   96 (358)
Q Consensus        24 ~~~~-l~~-~~g~-v~l~~~-~gk~vlv~F~-a~wC~~C-~~~~p~~~~~~~~l~~~~~~~~iv-~i~~d~~~~~~~~~~   96 (358)
                      -++| |.+ .+|+ ++++++ +||.|+|+|| +.|++.| .+..+.+.+.++.+.+.|  .+.+ .++.+ +.....++.
T Consensus         9 aP~f~l~~~~~~~~v~l~d~~~gk~vvL~fyP~afTp~Ct~~~~~~~~~~~~~~~~~g--~~~i~~~s~~-~~~~~~~~~   85 (161)
T d1hd2a_           9 IPAVEVFEGEPGNKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAEALKAKG--VQVVACLSVN-DAFVTGEWG   85 (161)
T ss_dssp             CCCCEEECSSTTCEEEHHHHTTTSEEEEEEESCTTCHHHHHTHHHHHHHTHHHHHTTT--CCEEEEEESS-CHHHHHHHH
T ss_pred             CCCeEEEecCCCcEEEhHHHhCCCeEEEEEEeccccccchhhhhhHHHhhhHHHHHcC--CeEEEEEecC-chhhhhhhh
Confidence            3456 654 4577 999995 8999999999 8899999 568999999999998887  5444 45555 444444443


Q ss_pred             hhCC----Ccccccccceeeecccc
Q 018266           97 KSSD----GTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        97 ~~~~----~~~~~~~~~~l~~~~gi  117 (358)
                      ....    ..++.+...++++.||+
T Consensus        86 ~~~~~~~~~~llsD~~~~~a~~~g~  110 (161)
T d1hd2a_          86 RAHKAEGKVRLLADPTGAFGKETDL  110 (161)
T ss_dssp             HHTTCTTTCEEEECTTCHHHHHHTC
T ss_pred             hhcccccccccccCCcceeeeeeee
Confidence            3322    24566666677777775

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=2.4e-05  Score=60.85  Aligned_cols=91  Identities=18%  Similarity=0.223  Sum_probs=54.0

Q ss_pred             cccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC--C-CHHH---HHHhh------------hc
Q 018266          166 SELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD--R-DHKE---FDLNH------------SI  227 (358)
Q Consensus       166 ~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d--~-~~~~---~~~~~------------~~  227 (358)
                      ..-.+|.+++.|+-+.||+|+++.+.+.++.+.       +..|+.+...  . ....   .....            ..
T Consensus        22 g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~   94 (150)
T d1t3ba1          22 PAKNEKHVVTVFMDITCHYCHLLHQQLKEYNDL-------GITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEK   94 (150)
T ss_dssp             CCTTCSEEEEEEECTTCHHHHHHHTTHHHHHHT-------TEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEECCCCHHHHHHhHHHHHHhcc-------CceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhh
Confidence            333468899999999999999999999888643       2345554432  1 1110   00000            00


Q ss_pred             ---CCccccccCchhHHHHHHHcCCCceeeEEEECCCCcEE
Q 018266          228 ---MPWLAIPYEDRARQDLCRIFNIKGIPALVLIGPDGKTI  265 (358)
Q Consensus       228 ---~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid~~G~v~  265 (358)
                         .......-....+..+++.+||+++|++++  .||+++
T Consensus        95 ~~~~~~~~~~~~i~~~~~la~~lGv~GTPt~~~--~nG~~i  133 (150)
T d1t3ba1          95 GNLPKEVKTPNIVKKHYELGIQFGVRGTPSIVT--STGELI  133 (150)
T ss_dssp             TCCCSSCCCSSHHHHHHHHHHHHTCCSSCEEEC--TTSCCC
T ss_pred             hccccchhhhhHHHHHHHHHHhcCcCCCCEEEE--cCCcEe
Confidence               001111112334668899999999999886  456643

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=8.5e-07  Score=64.26  Aligned_cols=29  Identities=17%  Similarity=0.281  Sum_probs=24.5

Q ss_pred             CCEEEEEEeCCCChhhhhhhHHHHHHHHH
Q 018266           42 GKTICLFFSANWCRPCKTFTPQLVQLYDT   70 (358)
Q Consensus        42 gk~vlv~F~a~wC~~C~~~~p~~~~~~~~   70 (358)
                      ..++++.|+++||++|+++.|.|+++...
T Consensus        15 ~~p~i~lft~~~C~~C~~a~~~L~~~~~~   43 (100)
T d1wjka_          15 ALPVLTLFTKAPCPLCDEAKEVLQPYKDR   43 (100)
T ss_dssp             CCCEEEEEECSSCHHHHHHHHHTSTTSSS
T ss_pred             CCCEEEEEECCCCCChHHHHHHHHHhhhh
Confidence            46788999999999999999988876443

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.45  E-value=0.00058  Score=53.57  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=40.7

Q ss_pred             eeeecccCCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          162 KITVSELAGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       162 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      .+.+.+-..++.++.|+...||+|.++.+.+.++.+++.+  ...+.++.+..
T Consensus        16 ~~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~--~~~~~~~~~~~   66 (172)
T d1z6ma1          16 GLHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVK--SGKVERIIKLF   66 (172)
T ss_dssp             SEEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHH--TTSEEEEEEEC
T ss_pred             CCeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcc--ccceeeeeccc
Confidence            3456666678899999999999999999999999998874  34566766655

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.32  E-value=0.00067  Score=53.51  Aligned_cols=101  Identities=16%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             eeeeccc-CCcEEEEE-EeccCCcccHh-hHHHHHHHHHHh-hcccCCce-EEEEEeCCCCHHHHHHhhhcCCccccccC
Q 018266          162 KITVSEL-AGKTIGLY-FGAHWCPPCRS-FTSQLIEVYNEL-KTTANHCF-EVVLVSTDRDHKEFDLNHSIMPWLAIPYE  236 (358)
Q Consensus       162 ~~~l~~~-~~k~vlv~-F~a~wC~~C~~-~~~~l~~l~~~~-~~~~~~~~-~vv~v~~d~~~~~~~~~~~~~~~~~~~~~  236 (358)
                      .++++++ +||.|+|. +.+...|.|.. .+|.+.+.++++ +.   .++ +|+.++++. .-....|.+.+....+.+.
T Consensus        33 ~~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~---~gvd~I~~iSvnD-~fv~~aW~~~~~~~~I~~l  108 (179)
T d1xiya1          33 SIDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKE---NNFDDIYCITNND-IYVLKSWFKSMDIKKIKYI  108 (179)
T ss_dssp             EEEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTT---SCCSEEEEEESSC-HHHHHHHHHHTTCCSSEEE
T ss_pred             EeeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHh---cCCceEEEEecCC-HHHHHHHHhhcCcceEEEe
Confidence            4555555 67655554 55678889955 699999999998 43   444 788899975 3333344444444457778


Q ss_pred             chhHHHHHHHcCCC-----------ceeeEEEECCCCcEEec
Q 018266          237 DRARQDLCRIFNIK-----------GIPALVLIGPDGKTIST  267 (358)
Q Consensus       237 ~~~~~~l~~~~~v~-----------~~P~~~lid~~G~v~~~  267 (358)
                      .|.+.++.+.||+.           +....++++ +|+|.+.
T Consensus       109 sD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~  149 (179)
T d1xiya1         109 SDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKM  149 (179)
T ss_dssp             ECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEE
T ss_pred             eCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEE
Confidence            88889999998862           334578886 8998876

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=97.16  E-value=0.0012  Score=51.99  Aligned_cols=42  Identities=14%  Similarity=0.326  Sum_probs=33.6

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVST  214 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~  214 (358)
                      .++++++.|+...||+|+.+.+.+.++.+++.    .+..++...+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~----~~~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLP----EGAKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSC----TTCEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcc----cccceeEEec
Confidence            45788899999999999999999999988886    3455555443

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0012  Score=52.46  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=33.0

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .++++++.|+.-.||+|+.+.+.+..+.+.... ....+.++...+.
T Consensus        17 ~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKK-LPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTT-SCTTCCEEEEECS
T ss_pred             CCCCEEEEEECCCChhhHHHHHHHHHHHHHhhc-cCCceEEEEEecC
Confidence            467888999999999999999887666554332 2345666666653

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=96.97  E-value=0.0015  Score=43.52  Aligned_cols=59  Identities=15%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+||++|......|.+          .++.+..+.++.+.+                    .....+.+|.+++|
T Consensus         3 v~iYt~~~C~~C~~ak~~L~~----------~~i~~~~~~i~~~~~--------------------~~~~~~~~g~~tvP   52 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALDR----------AGLAYNTVDISLDDE--------------------ARDYVMALGYVQAP   52 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCBCCC
T ss_pred             EEEEeCCCChhHHHHHHHHHH----------cCCceEEEEccCCHH--------------------HHHHHHHhCCCCcC
Confidence            456889999999987766643          345566677776542                    23455677899999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .+++   +|+.+
T Consensus        53 ~i~i---~g~~i   61 (74)
T d1r7ha_          53 VVEV---DGEHW   61 (74)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            8764   45543

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=96.91  E-value=0.00048  Score=53.92  Aligned_cols=96  Identities=17%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             ccccCccc-ccCCCC---c-eecccC-CCCEEEEEEe-CCCChhhhhhhHHH-HHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           20 LASEGVEF-LLSRQG---K-VPLSSC-GGKTICLFFS-ANWCRPCKTFTPQL-VQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        20 l~~~~~~~-l~~~~g---~-v~l~~~-~gk~vlv~F~-a~wC~~C~~~~p~~-~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ...+-++| +....|   + ++++++ +||.|+|+|| +.+.+.|......+ .+.++.+...+. -.++.++.+ +...
T Consensus         3 ~Gd~~Pdftl~~~~~~~~~~~slsd~~~gk~VVL~f~P~afTp~Ct~e~~~~~~~~~~~~~~~~~-~~vv~~~s~-d~~~   80 (163)
T d1nm3a2           3 EGKKVPQVTFRTRQGDKWVDVTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGV-DDILVVSVN-DTFV   80 (163)
T ss_dssp             TTSBCCCCEEEEEETTEEEEEEHHHHHTTSEEEEEEESCSSCHHHHHTHHHHHHHHHHHHHHTTC-CEEEEEESS-CHHH
T ss_pred             CCCCCCCeEEEEEcCCCceEEEHHHHhCCCeEEEEEEeccccccchhhhhhhhhhcchhhhhhcc-cceeeeecC-CHHH
Confidence            33444555 443333   4 999996 9999999999 89999998866554 444444444442 234444444 3333


Q ss_pred             HHHHHhh---CCCcccccccceeeecccc
Q 018266           92 FEEHFKS---SDGTLIEEDLIGLIEDYGA  117 (358)
Q Consensus        92 ~~~~~~~---~~~~~~~~~~~~l~~~~gi  117 (358)
                      ..+....   ....++.+....+++.||.
T Consensus        81 ~~a~~~~~~~~~~~llsD~~~~~~~~~g~  109 (163)
T d1nm3a2          81 MNAWKEDEKSENISFIPDGNGEFTEGMGM  109 (163)
T ss_dssp             HHHHHHHTTCTTSEEEECTTSHHHHHTTC
T ss_pred             HHHHhhhhccCceeeeccCChHHHHHhhh
Confidence            3333322   2223444444444555543

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=96.72  E-value=0.0014  Score=51.07  Aligned_cols=57  Identities=25%  Similarity=0.456  Sum_probs=45.6

Q ss_pred             CCCCc-eecccC-CCCEEEEEEe-CCCChhh-hhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           30 SRQGK-VPLSSC-GGKTICLFFS-ANWCRPC-KTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        30 ~~~g~-v~l~~~-~gk~vlv~F~-a~wC~~C-~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +..++ ++++++ +||.|+|+|| +.|++.| .+..|.+....+.+++.|. .+++.+++|.
T Consensus        21 ~~~~~~~~l~d~~~gk~vVl~f~P~afT~~Ct~e~~~~~~~~~d~~~~~g~-~~v~~isvd~   81 (162)
T d1tp9a1          21 QDQLQEVSVHSLVAGKKVILFGVPGAFTPTCSLKHVPGFIEKAGELKSKGV-TEILCISVND   81 (162)
T ss_dssp             TSCEEEEESHHHHTTSEEEEEEESCTTCHHHHHTHHHHHHHHHHHHHHTTC-CCEEEEESSC
T ss_pred             CCCceEEEHHHHhCCCeEEEEEEecccchhhhhhcchHHHHhhhHHHHcCC-cceeeeeccc
Confidence            33455 999885 9999999999 8999999 5788888888888877662 3577888874

>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 3, ZZZ3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00022  Score=47.02  Aligned_cols=33  Identities=21%  Similarity=0.605  Sum_probs=28.6

Q ss_pred             CceeecCcCCC-CcceEEEcCCC----CCCCCcccccC
Q 018266          321 KAYVCDCCKMR-GRFWAFSCDVC----NYDLHPKCVEG  353 (358)
Q Consensus       321 ~~~~C~~C~e~-g~~~~~~~~~~----~~~~~~~~~~~  353 (358)
                      ..+.|++|.+. ..|.||+|..|    ||||+..|-..
T Consensus        13 ~~~~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~   50 (69)
T d2fc7a1          13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDC   50 (69)
T ss_dssp             SSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTC
T ss_pred             CCeEcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcC
Confidence            35789999996 79999999999    79999999543

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.44  E-value=0.0038  Score=48.61  Aligned_cols=51  Identities=18%  Similarity=0.307  Sum_probs=41.6

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +.+-+-..+..++.|+-..||||+++.|.+.++.+++.+.+ .+.++.+...
T Consensus        17 ~~~G~~~a~v~I~ef~d~~Cp~C~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   67 (172)
T d1z6ma1          17 LHIGESNAPVKMIEFINVRCPYCRKWFEESEELLAQSVKSG-KVERIIKLFD   67 (172)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHHHHHTT-SEEEEEEECC
T ss_pred             CeecCCCCCEEEEEEECCCCHhHHHHHHHHhhhhhhhcccc-ceeeeecccc
Confidence            67777778899999999999999999999999988887654 2566666554

>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: CREB-binding protein, CBP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.00033  Score=43.00  Aligned_cols=28  Identities=39%  Similarity=0.901  Sum_probs=24.4

Q ss_pred             eeecCcCCCCcceEEEcCCCC-CCCCcccc
Q 018266          323 YVCDCCKMRGRFWAFSCDVCN-YDLHPKCV  351 (358)
Q Consensus       323 ~~C~~C~e~g~~~~~~~~~~~-~~~~~~~~  351 (358)
                      |.|+.|.... +-+|+|..|+ |||+..|-
T Consensus         7 ~tCd~C~~~i-~~Ry~C~~C~DfDLC~~C~   35 (52)
T d1tota1           7 YTCNECKHHV-ETRWHCTVCEDYDLCINCY   35 (52)
T ss_dssp             EEETTTTEEE-SSEEEESSSSSCEECHHHH
T ss_pred             EECcCCCCcC-CCceECCCCCCcccHHHHh
Confidence            6799998764 6799999999 99999993

>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: ZZ domain
domain: Zinc finger ZZ-type-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00062  Score=46.60  Aligned_cols=30  Identities=27%  Similarity=0.613  Sum_probs=26.3

Q ss_pred             ceeecCcCCC-CcceEEEcCCCC-CCCCcccc
Q 018266          322 AYVCDCCKMR-GRFWAFSCDVCN-YDLHPKCV  351 (358)
Q Consensus       322 ~~~C~~C~e~-g~~~~~~~~~~~-~~~~~~~~  351 (358)
                      ...|++|... ..|-+|+|..|. |||+..|-
T Consensus        24 ~v~Cd~C~~~~i~G~Ry~C~~C~dyDLC~~C~   55 (85)
T d2dipa1          24 GIPCNNCKQFPIEGKCYKCTECIEYHLCQECF   55 (85)
T ss_dssp             CCCCSSSCCSSCCSCEEEESSSSSCEEEHHHH
T ss_pred             CeECCCCCCCCcCcceEEcCCCCCccchHHHH
Confidence            3579999875 899999999997 99999993

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0068  Score=40.39  Aligned_cols=54  Identities=13%  Similarity=0.321  Sum_probs=36.7

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|..+||++|......|.+          .++.+..+.++.+.+                    ..+..+..|.+.+|
T Consensus         3 i~iYs~~~C~~C~~ak~~L~~----------~~i~y~~~~i~~~~~--------------------~~~~~~~~g~~tvP   52 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAMEN----------RGFDFEMINVDRVPE--------------------AAEALRAQGFRQLP   52 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHHH----------TTCCCEEEETTTCHH--------------------HHHHHHHTTCCSSC
T ss_pred             EEEEeCCCCccHHHHHHHHHh----------cCceeEEEeecCCHH--------------------HHHHHHhcCCCCCC
Confidence            456889999999987766643          334555667776542                    12334557899999


Q ss_pred             eEEE
Q 018266          254 ALVL  257 (358)
Q Consensus       254 ~~~l  257 (358)
                      .+++
T Consensus        53 ~i~i   56 (76)
T d1h75a_          53 VVIA   56 (76)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9765

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.06  E-value=0.014  Score=42.48  Aligned_cols=68  Identities=15%  Similarity=0.271  Sum_probs=47.9

Q ss_pred             ccCCcEEEEEEec-cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHH
Q 018266          167 ELAGKTIGLYFGA-HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCR  245 (358)
Q Consensus       167 ~~~~k~vlv~F~a-~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  245 (358)
                      .+++.+.++.|.+ ..|+.|..+...|++++.-     .+++.+.....+...                     ..++++
T Consensus        19 ~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~l-----Sdki~~~~~~~~~~e---------------------~~~~~~   72 (119)
T d1a8la1          19 KMVNPVKLIVFVRKDHCQYCDQLKQLVQELSEL-----TDKLSYEIVDFDTPE---------------------GKELAK   72 (119)
T ss_dssp             GCCSCEEEEEEECSSSCTTHHHHHHHHHHHHTT-----CTTEEEEEEETTSHH---------------------HHHHHH
T ss_pred             hCCCCEEEEEEecCCCchhHHHHHHHHHHHHhh-----CCCeEEEEeccCcch---------------------hhhHHH
Confidence            3444555566654 5799999877766666432     366777777766543                     578999


Q ss_pred             HcCCCceeeEEEECC
Q 018266          246 IFNIKGIPALVLIGP  260 (358)
Q Consensus       246 ~~~v~~~P~~~lid~  260 (358)
                      .|++...|++.+.+.
T Consensus        73 ~~~ver~Ps~~i~~~   87 (119)
T d1a8la1          73 RYRIDRAPATTITQD   87 (119)
T ss_dssp             HTTCCSSSEEEEEET
T ss_pred             hhccccCceEEEecC
Confidence            999999999998854

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=95.93  E-value=0.025  Score=37.34  Aligned_cols=58  Identities=19%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|..++|+.|......|.+    .     .++.+.-+.++.+                       .++.++|+.+ +|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~----~-----~~~~~~~vdI~~d-----------------------~~l~~~y~~~-IP   48 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ----A-----RAGAFFSVFIDDD-----------------------AALESAYGLR-VP   48 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----T-----TCCCEEEEECTTC-----------------------HHHHHHHTTT-CS
T ss_pred             EEEECCCCccHHHHHHHHHHh----c-----cCCcEEEEEccCC-----------------------HHHHHHhCCe-ee
Confidence            456789999999865543322    1     3356777777765                       5788899866 79


Q ss_pred             eEEEECCCCcEEe
Q 018266          254 ALVLIGPDGKTIS  266 (358)
Q Consensus       254 ~~~lid~~G~v~~  266 (358)
                      .+. + .+|....
T Consensus        49 Vl~-~-~~~~~l~   59 (75)
T d1ttza_          49 VLR-D-PMGRELD   59 (75)
T ss_dssp             EEE-C-TTCCEEE
T ss_pred             EEE-E-CCeeEEc
Confidence            653 4 3455543

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.74  E-value=0.03  Score=37.07  Aligned_cols=59  Identities=17%  Similarity=0.265  Sum_probs=45.2

Q ss_pred             EeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEE
Q 018266          177 FGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALV  256 (358)
Q Consensus       177 F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~  256 (358)
                      ..++.|+.|.+.....++..++..    -+.+|.-|.   +                      ..++. +|||.++|.++
T Consensus         6 Vlg~gC~~C~~~~~~v~~a~~e~g----i~a~v~kv~---d----------------------~~ei~-~ygVmstPalv   55 (77)
T d1iloa_           6 IYGTGCANCQMLEKNAREAVKELG----IDAEFEKIK---E----------------------MDQIL-EAGLTALPGLA   55 (77)
T ss_dssp             EECSSSSTTHHHHHHHHHHHHHTT----CCEEEEEEC---S----------------------HHHHH-HHTCSSSSCEE
T ss_pred             EeCCCCccHHHHHHHHHHHHHHcC----CceEEEEeC---C----------------------HHHHH-HcCCcCCCEEE
Confidence            348999999999998888877764    566666662   2                      35666 59999999988


Q ss_pred             EECCCCcEEecC
Q 018266          257 LIGPDGKTISTN  268 (358)
Q Consensus       257 lid~~G~v~~~~  268 (358)
                      +   ||+++..+
T Consensus        56 I---dg~vv~~G   64 (77)
T d1iloa_          56 V---DGELKIMG   64 (77)
T ss_dssp             E---TTEEEECS
T ss_pred             E---CCEEEEEe
Confidence            6   88888664

>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Kinase suppressor of Ras, Ksr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.52  E-value=0.0052  Score=37.09  Aligned_cols=31  Identities=26%  Similarity=0.724  Sum_probs=26.5

Q ss_pred             ceeecCcCCCCcceEEEcCCCCCCCCcccccC
Q 018266          322 AYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEG  353 (358)
Q Consensus       322 ~~~C~~C~e~g~~~~~~~~~~~~~~~~~~~~~  353 (358)
                      +..|..|++... +.|+|.+|+|-.|.+|+..
T Consensus        14 ~~tC~~C~~~l~-qg~~C~~C~~~~Hk~C~~~   44 (49)
T d1kbea_          14 SQVCNVCQKSMI-FGVKCKHCRLKCHNKCTKE   44 (49)
T ss_dssp             SCCCSSSCCSSC-CEEEETTTTEEESSSCTTT
T ss_pred             CCCchhhchhhh-CcCCcCCCCChHhHhhccc
Confidence            334999999875 7899999999999999754

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=95.30  E-value=0.012  Score=39.77  Aligned_cols=60  Identities=17%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      +..|..+|||+|.+....|.+.          ++.+..+.++.+.+.                   ...+.+..|.+.+|
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~~----------~i~y~~~di~~~~~~-------------------~~~~~~~~g~~tvP   53 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSSK----------GVSFQELPIDGNAAK-------------------REEMIKRSGRTTVP   53 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----------TCCCEEEECTTCSHH-------------------HHHHHHHHSSCCSC
T ss_pred             EEEEeCCCCHhHHHHHHHHHHc----------CCCeEEEeccchHHH-------------------HHHHHHHhCCCCCC
Confidence            3468889999999876665432          234445566654311                   34566677889999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .++ +  +|+.+
T Consensus        54 ~i~-i--~~~~I   62 (82)
T d1fova_          54 QIF-I--DAQHI   62 (82)
T ss_dssp             EEE-E--TTEEE
T ss_pred             eEE-E--CCEEE
Confidence            876 4  55544

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.15  E-value=0.0078  Score=42.92  Aligned_cols=66  Identities=20%  Similarity=0.306  Sum_probs=39.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|..+|||+|......|.++.-++     ..+.+.-+..+.+...+.                  ..+.+..+.+.+|
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~~~~~~-----~~~~~~e~d~~~d~~~~~------------------~~l~~~~g~~tvP   70 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQLPFKE-----GLLEFVDITATSDTNEIQ------------------DYLQQLTGARTVP   70 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHSCBCT-----TSEEEEEGGGSTTHHHHH------------------HHHHHHHSCCCSC
T ss_pred             EEEEECCCCchHHHHHHHHHHhCCcc-----ceeeeeecccccccHHHH------------------HHHhhccCCCcCc
Confidence            45688999999998777665432222     334444444444432221                  2344556788999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .+++   +|+.+
T Consensus        71 qIfi---~g~~I   79 (105)
T d1ktea_          71 RVFI---GKECI   79 (105)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            8865   56654

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=95.04  E-value=0.03  Score=36.80  Aligned_cols=59  Identities=17%  Similarity=0.236  Sum_probs=36.7

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCcee
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIP  253 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P  253 (358)
                      ++.|+.++||+|.+....|.+.    .      +.+..+.++.+..                    ...+.+..+...+|
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~~----~------i~~~~~~v~~~~~--------------------~~~~~~~~~~~tvP   56 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHDK----G------LSFEEIILGHDAT--------------------IVSVRAVSGRTTVP   56 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHHH----T------CCCEEEETTTTCC--------------------HHHHHHHTCCSSSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHc----C------CCeEEEEccCcHH--------------------HHHHHHHhCCccCC
Confidence            3568899999999877766543    2      2333445543320                    24455667888999


Q ss_pred             eEEEECCCCcEE
Q 018266          254 ALVLIGPDGKTI  265 (358)
Q Consensus       254 ~~~lid~~G~v~  265 (358)
                      .+++   +|+.+
T Consensus        57 ~i~i---~g~~I   65 (74)
T d1nm3a1          57 QVFI---GGKHI   65 (74)
T ss_dssp             EEEE---TTEEE
T ss_pred             EEEE---CCEEE
Confidence            8754   55544

>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: RAF-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.015  Score=35.42  Aligned_cols=36  Identities=28%  Similarity=0.677  Sum_probs=29.4

Q ss_pred             cCCceeecCcCCCCcceEEEcCCCCCCCCcccccCcc
Q 018266          319 MAKAYVCDCCKMRGRFWAFSCDVCNYDLHPKCVEGIN  355 (358)
Q Consensus       319 ~~~~~~C~~C~e~g~~~~~~~~~~~~~~~~~~~~~~~  355 (358)
                      ...+..|..|++..- ..|+|..|++..|.+|.....
T Consensus        11 f~~~~~C~~C~~~i~-~g~~C~~C~~~~H~~C~~~v~   46 (52)
T d1faqa_          11 FLKLAFCDICQKFLL-NGFRCQTCGYKFHEHCSTKVP   46 (52)
T ss_dssp             CSSCEECTTSSSEEC-SEEECTTTTCCBCSTTSSSSS
T ss_pred             CCCCcCCccCCCccc-cCCCcCCCCChhhhhhhcccc
Confidence            346788999999653 569999999999999987643

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=94.89  E-value=0.0095  Score=39.33  Aligned_cols=36  Identities=17%  Similarity=0.337  Sum_probs=26.2

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|..+||++|.+....|.       +.|  +.+..++++.+.+
T Consensus         3 v~iYt~~~C~~C~~ak~~L~-------~~~--i~~~~~~i~~~~~   38 (74)
T d1r7ha_           3 ITLYTKPACVQCTATKKALD-------RAG--LAYNTVDISLDDE   38 (74)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTT--CCCEEEETTTCHH
T ss_pred             EEEEeCCCChhHHHHHHHHH-------HcC--CceEEEEccCCHH
Confidence            46788999999999776554       345  5677778887654

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.012  Score=46.30  Aligned_cols=47  Identities=15%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             CCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           40 CGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        40 ~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      ..+++++|+|+.-.||||+++.|.+..+.+........+.++.....
T Consensus        16 ~~~~~~VvEffdy~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          16 VAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             CTTCCSEEEEECTTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCCEEEEEECCCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            45788999999999999999999886666654443333556555544

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=94.63  E-value=0.015  Score=37.45  Aligned_cols=43  Identities=23%  Similarity=0.648  Sum_probs=32.7

Q ss_pred             ceeeeee-cCCceeecCcCCCCcce---EEEcCCCCCCCCcccccCc
Q 018266          312 EHELKLD-MAKAYVCDCCKMRGRFW---AFSCDVCNYDLHPKCVEGI  354 (358)
Q Consensus       312 ~~~~~~~-~~~~~~C~~C~e~g~~~---~~~~~~~~~~~~~~~~~~~  354 (358)
                      +|.+... ...+-.|..|.+...|+   .|+|..|++-.|.+|+...
T Consensus         8 ~H~F~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   54 (66)
T d1tbna_           8 KHKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSV   54 (66)
T ss_dssp             SCCEEECCSSSCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTS
T ss_pred             CCceEEEeCCCCcCCcCCCCcccCcccCccccCcccCeEChHHhccc
Confidence            4555443 34567899999976553   5999999999999997654

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.49  E-value=0.023  Score=44.33  Aligned_cols=81  Identities=16%  Similarity=0.264  Sum_probs=53.1

Q ss_pred             eecccC-CCCEEEEEEe-CCCChhhhh-hhHHHHHHHHHH-hcCCCceEEEEEEecCChhHHHHHHhh---CCCcccccc
Q 018266           35 VPLSSC-GGKTICLFFS-ANWCRPCKT-FTPQLVQLYDTL-RTRGTELEVIFISFDHDENGFEEHFKS---SDGTLIEED  107 (358)
Q Consensus        35 v~l~~~-~gk~vlv~F~-a~wC~~C~~-~~p~~~~~~~~l-~~~~~~~~iv~i~~d~~~~~~~~~~~~---~~~~~~~~~  107 (358)
                      ++++++ +||-|+|.++ +.+-|.|.. +.|.|.+-++++ ++.|.+ +|+.++++. .-.+.++...   .....+.+.
T Consensus        34 ~~~~d~f~~KkVvl~~vPgAFTp~Cs~~hlp~y~~~~d~f~k~~gvd-~I~~iSvnD-~fv~~aW~~~~~~~~I~~lsD~  111 (179)
T d1xiya1          34 IDTHELFNNKKILLISLPGAFTPTCSTKMIPGYEEEYDYFIKENNFD-DIYCITNND-IYVLKSWFKSMDIKKIKYISDG  111 (179)
T ss_dssp             EEHHHHSTTCEEEEEECSCTTCHHHHHTHHHHHHHTHHHHHTTSCCS-EEEEEESSC-HHHHHHHHHHTTCCSSEEEECT
T ss_pred             eeHHHHhCCCeEEEEEcccccCCccchhhCcchhhhHHHHHHhcCCc-eEEEEecCC-HHHHHHHHhhcCcceEEEeeCC
Confidence            566675 8998888877 678999954 799999999998 566622 688888874 4444444333   222334444


Q ss_pred             cceeeecccc
Q 018266          108 LIGLIEDYGA  117 (358)
Q Consensus       108 ~~~l~~~~gi  117 (358)
                      ..++++.+|.
T Consensus       112 ~g~f~k~lg~  121 (179)
T d1xiya1         112 NSSFTDSMNM  121 (179)
T ss_dssp             TSHHHHHTTC
T ss_pred             chHHHHhhhc
Confidence            4455555553

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.36  E-value=0.031  Score=43.34  Aligned_cols=42  Identities=21%  Similarity=0.348  Sum_probs=33.3

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~   85 (358)
                      .+|+.+|+|+..-||||+.+.|.+.++.+++.+.   ..++...+
T Consensus        17 ~~~~~Ivef~d~~Cp~C~~~~~~~~~l~~~~~~~---~~~~~~~~   58 (181)
T d1beda_          17 SSSPVVSEFFSFYCPHCNTFEPIIAQLKQQLPEG---AKFQKNHV   58 (181)
T ss_dssp             CSSCEEEEEECTTCHHHHHHHHHHHHHHHTSCTT---CEEEEEEC
T ss_pred             CCCCEEEEEECCCCccchhhhhhhhhHhhhcccc---cceeEEec
Confidence            5788999999999999999999999888877544   44544443

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.18  E-value=0.018  Score=43.72  Aligned_cols=45  Identities=22%  Similarity=0.437  Sum_probs=33.4

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEe
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISF   85 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~   85 (358)
                      +..-.-..|.+++.|+=+-||+|+++.|.+.++.+    .+  ..++++..
T Consensus        19 ~i~g~~~ak~~I~~FsD~~CPyC~~~~~~l~~l~~----~~--~~v~~~~~   63 (150)
T d1t3ba1          19 IVYPAKNEKHVVTVFMDITCHYCHLLHQQLKEYND----LG--ITVRYLAF   63 (150)
T ss_dssp             EEECCTTCSEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEEC
T ss_pred             eEECCCCCCEEEEEEECCCCHHHHHHhHHHHHHhc----cC--ceEEEEEe
Confidence            44444567999999999999999999999987654    23  44555543

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.018  Score=38.14  Aligned_cols=36  Identities=19%  Similarity=0.429  Sum_probs=25.7

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      ++.|..+||++|.+....|.       +.|  +.+..++++.+.+
T Consensus         3 i~iYs~~~C~~C~~ak~~L~-------~~~--i~y~~~~i~~~~~   38 (76)
T d1h75a_           3 ITIYTRNDCVQCHATKRAME-------NRG--FDFEMINVDRVPE   38 (76)
T ss_dssp             EEEEECTTCHHHHHHHHHHH-------HTT--CCCEEEETTTCHH
T ss_pred             EEEEeCCCCccHHHHHHHHH-------hcC--ceeEEEeecCCHH
Confidence            45678999999999776553       344  5566777877654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.046  Score=41.63  Aligned_cols=46  Identities=17%  Similarity=0.379  Sum_probs=34.7

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +..-.-.+|.+++.|+-+-||+|+++.|.+.++.+    .+  +.++++...
T Consensus        19 iv~g~~~ak~tIv~FsD~~CpyC~~~~~~l~~~~~----~~--~~~~~~~~p   64 (156)
T d1eeja1          19 IVYKAPQEKHVITVFTDITCGYCHKLHEQMADYNA----LG--ITVRYLAFP   64 (156)
T ss_dssp             EEECCTTCCEEEEEEECTTCHHHHHHHTTHHHHHH----TT--EEEEEEECC
T ss_pred             eeecCCCCCEEEEEEeCCCCHHHHHHHHHHHHhhc----cC--ceEEEEecc
Confidence            44444568999999999999999999999988643    23  556666543

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.46  E-value=0.017  Score=46.12  Aligned_cols=46  Identities=15%  Similarity=0.220  Sum_probs=32.7

Q ss_pred             CCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           41 GGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        41 ~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      .+++.+++|+.-+||||..+.|.+..+.+-.+..+.++.++...+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcCCCcEEEEEecC
Confidence            4788999999999999999999886544433333333566665554

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.0028  Score=50.90  Aligned_cols=43  Identities=26%  Similarity=0.421  Sum_probs=31.7

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHH---HHHHHhhcccCCceEEEEEeCC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLI---EVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~---~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      .+++.++.|+.-+||+|..+.|.|.   ++.+.++    +++.++.+.+.
T Consensus       112 ~~~~~VvEffsy~Cp~C~~~e~~l~~~~~~~~~~~----~~v~~~~~~~~  157 (195)
T d1un2a_         112 AGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLP----EGVKMTKYHVN  157 (195)
T ss_dssp             TTCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSC----TTCCEEEEECS
T ss_pred             CCCceEEEEEecCCccccccchhhhHHHHHHhhcC----CCcEEEEEecC
Confidence            4678899999999999999999775   4444444    56667666554

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.037  Score=37.40  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=28.2

Q ss_pred             EEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCC
Q 018266          174 GLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTD  215 (358)
Q Consensus       174 lv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d  215 (358)
                      ++.|..++||+|.+....|.++..+++     ++.+.-+.++
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~-----~i~~~~~~~~   39 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERD-----DFQYQYVDIR   39 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHS-----SCEEEEECHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCC-----CceEEEEecC
Confidence            457899999999999988888877775     3566555543

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.11  Score=40.05  Aligned_cols=47  Identities=19%  Similarity=0.331  Sum_probs=35.1

Q ss_pred             eecccCCCCEEEEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEec
Q 018266           35 VPLSSCGGKTICLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFD   86 (358)
Q Consensus        35 v~l~~~~gk~vlv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d   86 (358)
                      +..-.-..+.+++.|+-+-||+|+.+.+.++++.+.    + .+.++++...
T Consensus        29 i~~G~~~a~~tv~vF~D~~CP~C~~~~~~l~~l~~~----~-~v~v~~~~~~   75 (169)
T d1v58a1          29 LLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDS----G-KVQLRTLLVG   75 (169)
T ss_dssp             EEESCTTCSEEEEEEECTTCHHHHHHHHHHHHHHHT----T-SEEEEEEECC
T ss_pred             ceeCCCCCCEEEEEEECCCCcchHHHHHHHHHHHhc----c-ceeEEEEecc
Confidence            444444567899999999999999999998776543    2 2777777664

>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Beta-chimaerin, middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.49  E-value=0.066  Score=33.74  Aligned_cols=35  Identities=17%  Similarity=0.466  Sum_probs=28.4

Q ss_pred             CCceeecCcCCCCc---ceEEEcCCCCCCCCcccccCc
Q 018266          320 AKAYVCDCCKMRGR---FWAFSCDVCNYDLHPKCVEGI  354 (358)
Q Consensus       320 ~~~~~C~~C~e~g~---~~~~~~~~~~~~~~~~~~~~~  354 (358)
                      ..+-.|..|.+...   ...|+|..|++-.|.+|....
T Consensus        13 ~~pt~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v   50 (62)
T d1xa6a3          13 RGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHV   50 (62)
T ss_dssp             SSCCBCTTTCCBCCTTTTCEECCSSSCCCBCTGGGTTS
T ss_pred             CCCCCCcccCccccccccCeEEcCCCCchhhHHHHhhC
Confidence            45667999999653   357999999999999997653

>d2axoa1 c.47.1.19 (A:38-262) Hypothetical protein Atu2684 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Atu2684-like
domain: Hypothetical protein Atu2684
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.05  E-value=0.63  Score=37.33  Aligned_cols=70  Identities=16%  Similarity=0.235  Sum_probs=46.3

Q ss_pred             cEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCc---cccccCchhHHHHHHHc
Q 018266          171 KTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPW---LAIPYEDRARQDLCRIF  247 (358)
Q Consensus       171 k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~  247 (358)
                      +.|+=.|.+.||..|......|.+|.+.      .++-.+.+.+|-        ....+|   +..|......+.....+
T Consensus         6 ~aVVElFTSqgCssCPpAd~~L~~L~~~------~~Vi~La~HVdY--------Wd~lGw~D~fa~~~~t~RQ~~Y~~~~   71 (225)
T d2axoa1           6 KGVVELFTSQGCASCPPADEALRKMIQK------GDVVGLSYHVDY--------WNYLGWTDSLASKENTERQYGYMRAL   71 (225)
T ss_dssp             CCEEEEEECTTCTTCHHHHHHHHHHHHH------TSSEEEEEECST--------TCSSSSCCTTCCHHHHHHHHHHHHHT
T ss_pred             CcEEEEeeCCCCCCCHHHHHHHHHhhCC------CCEEEEEecccc--------ccccCCCCCCCCchhhHHHHHHHHhc
Confidence            5678889999999999999888888653      567788888772        111111   12222222334567778


Q ss_pred             CCCceee
Q 018266          248 NIKGIPA  254 (358)
Q Consensus       248 ~v~~~P~  254 (358)
                      +.+.+||
T Consensus        72 g~~~vyT   78 (225)
T d2axoa1          72 GRNGVYT   78 (225)
T ss_dssp             TCSCCCS
T ss_pred             CCCCCCc
Confidence            8888765

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=91.36  E-value=0.088  Score=35.12  Aligned_cols=36  Identities=14%  Similarity=0.334  Sum_probs=24.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChh
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDEN   90 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~   90 (358)
                      +..|..+|||+|.+....|.+       .+  +.+..++++.+..
T Consensus         3 I~iys~~~Cp~C~~ak~~L~~-------~~--i~y~~~di~~~~~   38 (82)
T d1fova_           3 VEIYTKETCPYCHRAKALLSS-------KG--VSFQELPIDGNAA   38 (82)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEECTTCSH
T ss_pred             EEEEeCCCCHhHHHHHHHHHH-------cC--CCeEEEeccchHH
Confidence            356789999999987665543       34  5566777776543

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.72  E-value=0.16  Score=36.63  Aligned_cols=49  Identities=20%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             cccCCCCEEEEEEeC-CCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCCh
Q 018266           37 LSSCGGKTICLFFSA-NWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDE   89 (358)
Q Consensus        37 l~~~~gk~vlv~F~a-~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~   89 (358)
                      ++.+++.+.++.|.. +.|+.|..+...+.++++ +.++   +.+...+.+..+
T Consensus        17 ~~~l~~pV~l~~~~~~~~~~~~~e~~~ll~ela~-lSdk---i~~~~~~~~~~e   66 (119)
T d1a8la1          17 FSKMVNPVKLIVFVRKDHCQYCDQLKQLVQELSE-LTDK---LSYEIVDFDTPE   66 (119)
T ss_dssp             GGGCCSCEEEEEEECSSSCTTHHHHHHHHHHHHT-TCTT---EEEEEEETTSHH
T ss_pred             HHhCCCCEEEEEEecCCCchhHHHHHHHHHHHHh-hCCC---eEEEEeccCcch
Confidence            345666777777764 579999998887777765 3333   777777776544

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=90.44  E-value=0.068  Score=34.92  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=23.0

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHD   88 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~   88 (358)
                      ++.|+.++||+|++....|.+       .+  +.+..++++.+
T Consensus         7 I~iYs~~~C~~C~~ak~lL~~-------~~--i~~~~~~v~~~   40 (74)
T d1nm3a1           7 ISIFTKPGCPFCAKAKQLLHD-------KG--LSFEEIILGHD   40 (74)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH-------HT--CCCEEEETTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHH-------cC--CCeEEEEccCc
Confidence            367889999999997765544       34  44555566543

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.38  E-value=0.066  Score=37.76  Aligned_cols=42  Identities=26%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhH
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENG   91 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~   91 (358)
                      ++.|..+|||+|.+....|.+    +.-....+.+.-++.+.+...
T Consensus        14 Vviysk~~Cp~C~~ak~ll~~----~~~~~~~~~~~e~d~~~d~~~   55 (105)
T d1ktea_          14 VVVFIKPTCPFCRKTQELLSQ----LPFKEGLLEFVDITATSDTNE   55 (105)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH----SCBCTTSEEEEEGGGSTTHHH
T ss_pred             EEEEECCCCchHHHHHHHHHH----hCCccceeeeeecccccccHH
Confidence            568999999999997776654    332222345555555544443

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=90.38  E-value=0.37  Score=31.37  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=28.8

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecCChhHHHHH
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDHDENGFEEH   95 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~~~~~~~~~   95 (358)
                      +..|..++|+.|.+....+.+      ..+  +++..++++.+.+...+|
T Consensus         2 ltLyt~~~C~LCe~A~~~l~~------~~~--~~~~~vdI~~d~~l~~~y   43 (75)
T d1ttza_           2 LTLYQRDDCHLCDQAVEALAQ------ARA--GAFFSVFIDDDAALESAY   43 (75)
T ss_dssp             EEEEECSSCHHHHHHHHHHHH------TTC--CCEEEEECTTCHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHh------ccC--CcEEEEEccCCHHHHHHh
Confidence            467889999999875544332      223  678888999877655555

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=90.16  E-value=0.083  Score=35.56  Aligned_cols=38  Identities=11%  Similarity=0.247  Sum_probs=29.6

Q ss_pred             EEEEeCCCChhhhhhhHHHHHHHHHHhcCCCceEEEEEEecC
Q 018266           46 CLFFSANWCRPCKTFTPQLVQLYDTLRTRGTELEVIFISFDH   87 (358)
Q Consensus        46 lv~F~a~wC~~C~~~~p~~~~~~~~l~~~~~~~~iv~i~~d~   87 (358)
                      +|-|..+|||+|.+....|.++..++..    +++..++++.
T Consensus         3 vviysk~~Cp~C~~aK~ll~~~~~~~~~----i~~~~~~~~~   40 (85)
T d1egoa_           3 TVIFGRSGCPYCVRAKDLAEKLSNERDD----FQYQYVDIRA   40 (85)
T ss_dssp             EEEECCTTSTHHHHHHHHHHHHHHHHSS----CEEEEECHHH
T ss_pred             EEEEeCCCCHhHHHHHHHHHHcCCCCCC----ceEEEEecCC
Confidence            4678999999999999888887776654    6677776653

>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase C-delta (PKCdelta)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.10  E-value=0.088  Score=31.51  Aligned_cols=36  Identities=25%  Similarity=0.559  Sum_probs=28.8

Q ss_pred             cCCceeecCcCCCCcce---EEEcCCCCCCCCcccccCc
Q 018266          319 MAKAYVCDCCKMRGRFW---AFSCDVCNYDLHPKCVEGI  354 (358)
Q Consensus       319 ~~~~~~C~~C~e~g~~~---~~~~~~~~~~~~~~~~~~~  354 (358)
                      ...+-.|..|.+...|.   .|+|.+|++-.|.+|....
T Consensus         8 ~~~~~~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v   46 (50)
T d1ptqa_           8 YMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKV   46 (50)
T ss_dssp             CSSCCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTTS
T ss_pred             CCCCcCCcccCCcccCcccCcEECCCCCCeeChhHcccc
Confidence            34567899999976543   6999999999999997653

>d2djka1 c.47.1.2 (A:1-133) Protein disulfide isomerase, PDI {Fungi (Humicola insolens) [TaxId: 34413]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Fungi (Humicola insolens) [TaxId: 34413]

Probab=89.46  E-value=0.66  Score=33.61  Aligned_cols=71  Identities=10%  Similarity=0.129  Sum_probs=47.8

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .+++.++.|+... .........+.+++++|+    .++.++++..+.                       .....+.||
T Consensus        22 ~~~pl~~lf~~~~-~~~~~~~~~~~~vA~~~~----~ki~Fv~vd~~~-----------------------~~~~l~~~g   73 (133)
T d2djka1          22 AGIPLAYIFAETA-EERKELSDKLKPIAEAQR----GVINFGTIDAKA-----------------------FGAHAGNLN   73 (133)
T ss_dssp             TTSCEEEEECSCS-SSHHHHHHHHHHHHHSST----TTSEEEEECTTT-----------------------TGGGTTTTT
T ss_pred             CCCCEEEEEeCCc-hHHHHHHHHHHHHHHHhc----CceEEEEEeHHH-----------------------hHHHHHHhc
Confidence            3577777787654 345677788888888887    556666664432                       234456677


Q ss_pred             C--CceeeEEEECCCCcEEec
Q 018266          249 I--KGIPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v--~~~P~~~lid~~G~v~~~  267 (358)
                      +  ...|.+++++.++...+.
T Consensus        74 l~~~~~P~~~i~~~~~~~~~~   94 (133)
T d2djka1          74 LKTDKFPAFAIQEVAKNQKFP   94 (133)
T ss_dssp             CCSSSSSEEEEECTTTCCBCC
T ss_pred             CCcccCCcEEEEEcCCCceec
Confidence            7  468999999877665443

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.42  E-value=0.13  Score=34.50  Aligned_cols=34  Identities=21%  Similarity=0.453  Sum_probs=27.3

Q ss_pred             CCceeecCcCCCCcc----eEEEcCCCCCCCCcccccC
Q 018266          320 AKAYVCDCCKMRGRF----WAFSCDVCNYDLHPKCVEG  353 (358)
Q Consensus       320 ~~~~~C~~C~e~g~~----~~~~~~~~~~~~~~~~~~~  353 (358)
                      ..+-.|..|.+...+    ..|+|..|++-.|.+|...
T Consensus        36 ~~~~~C~~C~~~i~~~~~~qg~~C~~C~~~~H~~C~~~   73 (84)
T d1r79a_          36 PVSAKCTVCDKTCGSVLRLQDWRCLWCKAMVHTSCKES   73 (84)
T ss_dssp             CTTCBCSSSCCBCCCTTTCCCEEESSSCCEECHHHHHH
T ss_pred             CCCCCCcccCcccCCccccCcEecCcCCchhhhhhcCC
Confidence            356679999997543    3599999999999999654

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.22  E-value=0.74  Score=32.26  Aligned_cols=54  Identities=20%  Similarity=0.182  Sum_probs=34.7

Q ss_pred             cCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcCCCceeeEEEEC
Q 018266          180 HWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFNIKGIPALVLIG  259 (358)
Q Consensus       180 ~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~P~~~lid  259 (358)
                      |.||+|.+....|.+          .++.+..+.++.+.+.                   ...+.+..+...+|.+++  
T Consensus        28 p~Cp~c~~ak~lL~~----------~~i~~~~~~v~~~~~~-------------------~~~l~~~t~~~TvPqIFi--   76 (109)
T d1wika_          28 AKCGFSKQILEILNS----------TGVEYETFDILEDEEV-------------------RQGLKTFSNWPTYPQLYV--   76 (109)
T ss_dssp             CCSSTHHHHHHHHHH----------TCSCEEEEESSSCHHH-------------------HHHHHHHHSCCSSCEEEC--
T ss_pred             CCChHHHHHHHHHHh----------cCCCceEEEecccHHH-------------------HHHHHHhcCCCCCCeEEE--
Confidence            789999987766643          2234555677765421                   244555667788999885  


Q ss_pred             CCCcEE
Q 018266          260 PDGKTI  265 (358)
Q Consensus       260 ~~G~v~  265 (358)
                       +|+.+
T Consensus        77 -~g~~I   81 (109)
T d1wika_          77 -RGDLV   81 (109)
T ss_dssp             -SSSEE
T ss_pred             -CCEEE
Confidence             56654

>d2b5ea3 c.47.1.2 (A:240-364) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.35  E-value=2.6  Score=29.99  Aligned_cols=71  Identities=11%  Similarity=0.141  Sum_probs=48.1

Q ss_pred             CCcEEEEEEeccCCcccHhhHHHHHHHHHHhhcccCCceEEEEEeCCCCHHHHHHhhhcCCccccccCchhHHHHHHHcC
Q 018266          169 AGKTIGLYFGAHWCPPCRSFTSQLIEVYNELKTTANHCFEVVLVSTDRDHKEFDLNHSIMPWLAIPYEDRARQDLCRIFN  248 (358)
Q Consensus       169 ~~k~vlv~F~a~wC~~C~~~~~~l~~l~~~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  248 (358)
                      .|+++++.|+.+-- .-......+.+++++|+    .++.++.++.+.                       .....+.||
T Consensus        16 ~~~Pl~~~f~~~~~-~~~~~~~~~~~vAk~fk----gki~Fv~~D~~~-----------------------~~~~l~~fg   67 (125)
T d2b5ea3          16 SGLPLGYLFYNDEE-ELEEYKPLFTELAKKNR----GLMNFVSIDARK-----------------------FGRHAGNLN   67 (125)
T ss_dssp             TTSCEEEEEESSHH-HHHHHHHHHHHHHHHTT----TTCEEEEEEHHH-----------------------HTTHHHHTT
T ss_pred             cCCCEEEEEeCChH-HHHHHHHHHHHHHHHhc----CeeEEEEEchHH-----------------------hHHHHHHcC
Confidence            46788888887531 23466778888888887    556666665431                       345678888


Q ss_pred             CCc-eeeEEEECCCCcEEec
Q 018266          249 IKG-IPALVLIGPDGKTIST  267 (358)
Q Consensus       249 v~~-~P~~~lid~~G~v~~~  267 (358)
                      +.. .|.+++++......+.
T Consensus        68 l~e~~P~~~i~~~~~~~ky~   87 (125)
T d2b5ea3          68 MKEQFPLFAIHDMTEDLKYG   87 (125)
T ss_dssp             CCSCSSEEEEEETTTTEEEE
T ss_pred             CCccCCcEEEEecccCcccc
Confidence            854 8999998766554443