Citrus Sinensis ID: 018314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccccccccccccccEEEEcccccccHHHHHHHHHcccccEEEEEEccccccHHHHcccccccccEEEEEccccHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccEEEEEEEEcccccEEEcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccccEEEEEEEEEccEEEEEcccccccHHHHHHHHHHHHHccHHHHHccHHHHccccHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MRSSVLRSVKTLakpagargyssesvpdrKVAVLGaaggigqpLALLMKLNPLVSRLALydiantpgvaadvgHINTRSevagymgndqlgqaledsdvviipagvprkpgmtrddlfniNAGIVKDLCSAIAKYCPNAIVNmisnpvnstvPIAAEVFKkagtynekklfgvTTLDVVRAKtfyagkanvnvaevnvpvvgghagitilplfsqatpkanlaDEDIKALTKRTQDGGTEVVeakagkgsatLSMAYAGAIFADACLkglngvpdvvECSFVQStvtelpffaskvrlgkngveevlglgplsdfeqegleklnptfHIRKLFQILQFFRKCctccswhqlfgcfsle
Flexible Loop (DISEMBL)
mrssvlrsvktlakpagargyssesvpdRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKagtynekklfgvttLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTkrtqdggtevveakagkgsATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Low Complexity Region (SEG)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYagkanvnvaevnvpvvggHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Disordered region (IsUnstruct)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT*********************************ATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFS**
Disordered Region (DISOPRED)
*****************************KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Disordered Region (DISEMBL)
********VKTLA************VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Disordered Region (DISPRO)
****VLRSV*T*AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWHQLFGCFSLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
P17783	347	Malate dehydrogenase, mit	N/A	no	0.860	0.887	0.889	1e-159
Q9LKA3	341	Malate dehydrogenase 2, m	yes	no	0.902	0.947	0.842	1e-158
Q9ZP06	341	Malate dehydrogenase 1, m	no	no	0.913	0.958	0.822	1e-157
P83373	339	Malate dehydrogenase, mit	N/A	no	0.893	0.943	0.848	1e-157
P46487	347	Malate dehydrogenase, mit	N/A	no	0.913	0.942	0.850	1e-155
Q43744	341	Malate dehydrogenase, mit	N/A	no	0.907	0.953	0.809	1e-151
Q42686	373	Malate dehydrogenase, mit	N/A	no	0.863	0.828	0.673	1e-119
Q42972	356	Malate dehydrogenase, gly	no	no	0.854	0.859	0.689	1e-118
P46488	356	Malate dehydrogenase, gly	N/A	no	0.868	0.873	0.665	1e-115
P19446	356	Malate dehydrogenase, gly	N/A	no	0.868	0.873	0.659	1e-115

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  561 bits (1446), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 274/308 (88%), Positives = 294/308 (95%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+EGL
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGL 326

Query: 321 EKLNPTFH 328
           EKL P   
Sbjct: 327 EKLKPELK 334

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LKA3|MDHM2_ARATH Malate dehydrogenase 2, mitochondrial OS=Arabidopsis thaliana GN=At3g15020 PE=1 SV=1

 Score =  559 bits (1440), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 272/323 (84%), Positives = 303/323 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKL 323
           NGVEEVL LGPLSDFE+EGLE L
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEAL 324

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP06|MDHM1_ARATH Malate dehydrogenase 1, mitochondrial OS=Arabidopsis thaliana GN=At1g53240 PE=1 SV=1

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 269/327 (82%), Positives = 300/327 (91%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGKANV VAEVNVPV+GGHAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           NGVEEVL LGPLSDFE+EGLE L P  
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALKPEL 328

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P83373|MDHM_FRAAN Malate dehydrogenase, mitochondrial OS=Fragaria ananassa GN=MMDHI PE=1 SV=1

 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 275/324 (84%), Positives = 298/324 (91%), Gaps = 4/324 (1%)

Query: 4   SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
           S++RSV  +A+    RGYSSESVP RKVAVLGAAGGIGQPLALLMKLNPLVS+L+LYDIA
Sbjct: 6   SLIRSVSRVAR----RGYSSESVPQRKVAVLGAAGGIGQPLALLMKLNPLVSQLSLYDIA 61

Query: 64  NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
            TPGVAADV HINTRSEV GY G +QLG+ALE  DVVIIPAGVPRKPGMTRDDLFNINAG
Sbjct: 62  GTPGVAADVSHINTRSEVKGYAGEEQLGEALEGCDVVIIPAGVPRKPGMTRDDLFNINAG 121

Query: 124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
           IV+ L +AIAKYCP+AI+NMISNPVNSTVPIA+EV KKAG Y+EKKLFGVTTLDVVRAKT
Sbjct: 122 IVRSLTAAIAKYCPHAIINMISNPVNSTVPIASEVLKKAGVYDEKKLFGVTTLDVVRAKT 181

Query: 184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
           FYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D+ IKALTKRTQDGGTEVVE
Sbjct: 182 FYAGKAGVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDDYIKALTKRTQDGGTEVVE 241

Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
           AKAGKGSATLSMAYAGA+FADACL GLNGVPDVVECS+VQS++TELPFFASKVRLGKNGV
Sbjct: 242 AKAGKGSATLSMAYAGALFADACLXGLNGVPDVVECSYVQSSITELPFFASKVRLGKNGV 301

Query: 304 EEVLGLGPLSDFEQEGLEKLNPTF 327
           EEVL LGPLSDFE+EGL++L P  
Sbjct: 302 EEVLDLGPLSDFEKEGLKQLKPEL 325

Fragaria ananassa (taxid: 3747)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46487|MDHM_EUCGU Malate dehydrogenase, mitochondrial OS=Eucalyptus gunnii GN=MDH PE=2 SV=1

 Score =  549 bits (1414), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/334 (85%), Positives = 305/334 (91%), Gaps = 7/334 (2%)

Query: 1   MRSSVLRSVKTLAKPAGAR------GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLV 54
           MR+S+LR +++ +  A  R       Y SESVP+RKVAVLGAAGGIGQPLALLMKLNPLV
Sbjct: 1   MRASMLRLIRSRSSSAAPRPHLLRRAYGSESVPERKVAVLGAAGGIGQPLALLMKLNPLV 60

Query: 55  SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTR 114
           S+LALYDIA TPGVAADVGHINTRSEVAGY+G +QLGQALE SDVVIIPAGVPRKPGMTR
Sbjct: 61  SQLALYDIAGTPGVAADVGHINTRSEVAGYVGEEQLGQALEGSDVVIIPAGVPRKPGMTR 120

Query: 115 DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT 174
           DDLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAE+FKKAGTYNEKKL GVT
Sbjct: 121 DDLFNINAGIVKSLCTAIAKYCPNAVVNMISNPVNSTVPIAAEIFKKAGTYNEKKLLGVT 180

Query: 175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRT 234
           TLDVVRAKTFYAGKA V V EVNVPVVGGHAGITILPLFSQA PKANLADEDIKALTKRT
Sbjct: 181 TLDVVRAKTFYAGKAKVPVEEVNVPVVGGHAGITILPLFSQAVPKANLADEDIKALTKRT 240

Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST-VTELPFFA 293
           QDGGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQS+ +TELPFFA
Sbjct: 241 QDGGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSSIITELPFFA 300

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           SKV+LGKNGVEEVL LGP+SD+E++GLE L P  
Sbjct: 301 SKVKLGKNGVEEVLELGPMSDYEKQGLEILIPEL 334

Eucalyptus gunnii (taxid: 3933)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43744|MDHM_BRANA Malate dehydrogenase, mitochondrial OS=Brassica napus GN=MDH PE=2 SV=1

 Score =  533 bits (1374), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 263/325 (80%), Positives = 292/325 (89%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS+++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LY
Sbjct: 2   FRSALVRSSASAKQSLLRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L SAIAKYCP+A+VNMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLWSAIAKYCPHALVNMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            KT YAGKANV VAEVNVP + GHAG+TILPLFSQATP+A L+ + +   TKRTQDGGTE
Sbjct: 182 VKTSYAGKANVPVAEVNVPAIVGHAGVTILPLFSQATPQAILSGDALTVTTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           V EAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VEEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLNP 325
           NGVEEVL LGPLSDFE+EGLE L P
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEALRP 326

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42686|MDHM_CHLRE Malate dehydrogenase, mitochondrial OS=Chlamydomonas reinhardtii PE=3 SV=1

 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/312 (67%), Positives = 261/312 (83%), Gaps = 3/312 (0%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKVAVLGAAGGIGQPL++LMK+N  VS L+LYDIA TPGVAADV HINT+++V G+   D
Sbjct: 63  RKVAVLGAAGGIGQPLSMLMKMNSQVSSLSLYDIAGTPGVAADVSHINTKAQVKGF-DKD 121

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
            L +AL   D+VIIPAGVPRKPGMTRDDLF INAGIV+DL +A+ ++CP A++N+ISNPV
Sbjct: 122 GLAEALRGCDLVIIPAGVPRKPGMTRDDLFKINAGIVRDLVTAVGQHCPGAVLNIISNPV 181

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGIT 208
           NSTVPIAAE  KK G Y+++K+ GVTTLDVVRAKTFYA K  ++VA V+VPVVGGHAG+T
Sbjct: 182 NSTVPIAAEQLKKMGVYDKRKVMGVTTLDVVRAKTFYAEKNGLDVASVDVPVVGGHAGVT 241

Query: 209 ILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK 268
           ILPLFSQATPKA ++ E + ALTKRTQDGGTEVV+AKAGKGSATLSMAYA A+FAD+CL+
Sbjct: 242 ILPLFSQATPKATMSAEVLDALTKRTQDGGTEVVQAKAGKGSATLSMAYAAALFADSCLR 301

Query: 269 GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH 328
           GLNG P VVEC++V+STVT+ P+FASKV+L   GV+++  LGPLSD+E+ GL+ + P   
Sbjct: 302 GLNGAP-VVECTYVESTVTDAPYFASKVKLSTEGVDKIHDLGPLSDYEKAGLKAMMPEL- 359

Query: 329 IRKLFQILQFFR 340
           +  + + +QF +
Sbjct: 360 LASIEKGVQFVK 371

Chlamydomonas reinhardtii (taxid: 3055)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/306 (68%), Positives = 245/306 (80%)

Query: 17  GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN 76
           G+   +  + P  KVA+LGA+GGIGQPLALLMK+NPLVS L LYD+ NTPGV AD+ H+N
Sbjct: 33  GSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMN 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           T + V G++G  QL  AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ LC  IAK C
Sbjct: 93  TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 152

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV 196
           PNAIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVTTLDVVRA TF A    ++  +V
Sbjct: 153 PNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDV 212

Query: 197 NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           NVPV+GGHAG+TILPL SQ  P  +   E+I  LT R Q+GGTEVVEAKAG GSATLSMA
Sbjct: 213 NVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMA 272

Query: 257 YAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
           YA + FADACL+GL G   +VECSFV S VTELPFFASKVRLG+ G+EE+L LGPL++FE
Sbjct: 273 YAASKFADACLRGLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFE 332

Query: 317 QEGLEK 322
           + GLEK
Sbjct: 333 RAGLEK 338

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  416 bits (1068), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/320 (66%), Positives = 248/320 (77%), Gaps = 9/320 (2%)

Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SSVLR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSVLRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78

Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL +AL   D+V+IPAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINA 138

Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198

Query: 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF A    ++  +VNVPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVV 258

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   VVEC+FV S VTELPFFA+KVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECAFVSSQVTELPFFATKVRLGRNG 318

Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           ++EV  LGPL+++E+ GLEK
Sbjct: 319 IDEVYSLGPLNEYERIGLEK 338

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  414 bits (1063), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 211/320 (65%), Positives = 246/320 (76%), Gaps = 9/320 (2%)

Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78

Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINA 138

Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198

Query: 183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF A    ++  +V+VPVVGGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVV 258

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNG 318

Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           +EEV  LGPL+++E+ GLEK
Sbjct: 319 IEEVYSLGPLNEYERIGLEK 338

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
255566555	345	malate dehydrogenase, putative [Ricinus	0.913	0.947	0.879	1e-164
224114557	341	predicted protein [Populus trichocarpa]	0.905	0.950	0.859	1e-159
449438883	347	PREDICTED: malate dehydrogenase, mitocho	0.857	0.884	0.905	1e-158
126896	347	RecName: Full=Malate dehydrogenase, mito	0.860	0.887	0.889	1e-157
224061310	340	predicted protein [Populus trichocarpa]	0.902	0.95	0.859	1e-157
356517066	345	PREDICTED: malate dehydrogenase, mitocho	0.913	0.947	0.845	1e-157
350536645	346	mitochondrial malate dehydrogenase [Sola	0.913	0.945	0.837	1e-157
255634854	345	unknown [Glycine max]	0.913	0.947	0.842	1e-157
15232468	341	malate dehydrogenase 2 [Arabidopsis thal	0.902	0.947	0.842	1e-157
21388544	346	putative mitochondrial NAD-dependent mal	0.913	0.945	0.828	1e-156

>gi|255566555|ref|XP_002524262.1| malate dehydrogenase, putative [Ricinus communis] gi|223536453|gb|EEF38101.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 292/332 (87%), Positives = 306/332 (92%), Gaps = 5/332 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MRSS+ RSVK L   + +     RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS
Sbjct: 1   MRSSLFRSVKALGSTSSSSHLLRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            LALYDIANTPGVAADV HINTRS+V GY+G DQLG+ALE SDVVIIPAGVPRKPGMTRD
Sbjct: 61  NLALYDIANTPGVAADVSHINTRSDVKGYVGEDQLGKALEGSDVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTT
Sbjct: 121 DLFNINAGIVKGLCEAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTT 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA V VAEVNVPVVGGHAGITILPL SQATPKANL DE+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVPVAEVNVPVVGGHAGITILPLLSQATPKANLPDEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 300

Query: 296 VRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           VRLGKNGVEEVLGLGPLSD+E+EGLEKL P  
Sbjct: 301 VRLGKNGVEEVLGLGPLSDYEKEGLEKLKPEL 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114557|ref|XP_002316794.1| predicted protein [Populus trichocarpa] gi|118484579|gb|ABK94163.1| unknown [Populus trichocarpa] gi|222859859|gb|EEE97406.1| predicted protein [Populus trichocarpa]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 282/328 (85%), Positives = 302/328 (92%), Gaps = 4/328 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+LA    +    RGY+SE+VPDRKVAVLGAAGGIGQPLALLMKLNPLVS LALY
Sbjct: 2   MLRSIKSLATSPSSHILRRGYASEAVPDRKVAVLGAAGGIGQPLALLMKLNPLVSSLALY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV+GY G  +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVSHINTRSEVSGYSGEAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 122 NAGIVKGLCQAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+D +I ALTKRTQDGGTE
Sbjct: 182 AKTFYAGKAKVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDAEITALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGAIFADACLKGLNG PDVVECS+VQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGAPDVVECSYVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLNPTFH 328
           NGVEEVLGLGPLSD+E+EGLEKL P   
Sbjct: 302 NGVEEVLGLGPLSDYEKEGLEKLKPELQ 329

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438883|ref|XP_004137217.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus] gi|449483204|ref|XP_004156521.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 278/307 (90%), Positives = 293/307 (95%)

Query: 19  RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR 78
           R +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDI  TPGVAADVGH+NTR
Sbjct: 25  RTFATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIGATPGVAADVGHVNTR 84

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           SEV GYMG +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPN
Sbjct: 85  SEVTGYMGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPN 144

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV 198
           A+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNV
Sbjct: 145 ALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNV 204

Query: 199 PVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           PVVGGHAGITILPLFSQATPKANL D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYA
Sbjct: 205 PVVGGHAGITILPLFSQATPKANLTDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYA 264

Query: 259 GAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQE 318
           GA+FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+E
Sbjct: 265 GALFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKE 324

Query: 319 GLEKLNP 325
           GLEKL P
Sbjct: 325 GLEKLMP 331

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126896|sp|P17783.1|MDHM_CITLA RecName: Full=Malate dehydrogenase, mitochondrial; Flags: Precursor gi|18297|emb|CAA35239.1| unnamed protein product [Citrullus lanatus subsp. vulgaris]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/308 (88%), Positives = 294/308 (95%)

Query: 21  YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE 80
           +++ESVP+RKVAVLGAAGGIGQPLALLMKLNPLVS+LALYDIA TPGVAADVGH+NTRSE
Sbjct: 27  FATESVPERKVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSE 86

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V GY+G +QLG+ALE SDVVIIPAGVPRKPGMTRDDLFNINAGIVK LC+AIAKYCPNA+
Sbjct: 87  VTGYVGEEQLGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNAL 146

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           +NMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVTTLDVVRAKTFYAGKANV VAEVNVPV
Sbjct: 147 INMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPV 206

Query: 201 VGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 260
           +GGHAGITILPLFSQATP+ANL+D+ I ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA
Sbjct: 207 IGGHAGITILPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSMAYAGA 266

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL 320
           +FADACLKGLNGVPDVVECSFVQSTVTELPFFASKV+LGKNGVE VL LGPLSDFE+EGL
Sbjct: 267 LFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVESVLDLGPLSDFEKEGL 326

Query: 321 EKLNPTFH 328
           EKL P   
Sbjct: 327 EKLKPELK 334

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061310|ref|XP_002300420.1| predicted protein [Populus trichocarpa] gi|222847678|gb|EEE85225.1| predicted protein [Populus trichocarpa]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 281/327 (85%), Positives = 300/327 (91%), Gaps = 4/327 (1%)

Query: 5   VLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
           +LRS+K+L     +    RGY+SE+VP+RKVAVLGAAGGIGQ L+LLMKLNPLVS LALY
Sbjct: 1   MLRSIKSLTTSPSSHVLRRGYASEAVPERKVAVLGAAGGIGQSLSLLMKLNPLVSNLALY 60

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADV HINTRSEV GY  + +LG+ALE +DVVIIPAGVPRKPGMTRDDLFNI
Sbjct: 61  DIANTPGVAADVSHINTRSEVVGYASDAELGKALEGADVVIIPAGVPRKPGMTRDDLFNI 120

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK LC AIAK+CPNA+VNMISNPVNSTVPIAAEVFKKAGTY+ K+LFGVTTLDVVR
Sbjct: 121 NAGIVKGLCEAIAKHCPNALVNMISNPVNSTVPIAAEVFKKAGTYDPKRLFGVTTLDVVR 180

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           AKTFYAGKA V VAEVNVPVVGGHAGITILPLFSQATPKANL+DE I ALTKRTQDGGTE
Sbjct: 181 AKTFYAGKAMVPVAEVNVPVVGGHAGITILPLFSQATPKANLSDEVITALTKRTQDGGTE 240

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDV+ECSFVQSTVTELPFFASKVRLGK
Sbjct: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVIECSFVQSTVTELPFFASKVRLGK 300

Query: 301 NGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           NGVEEVLGLGPLSDFE+EGLEKL P  
Sbjct: 301 NGVEEVLGLGPLSDFEKEGLEKLKPEL 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517066|ref|XP_003527211.1| PREDICTED: malate dehydrogenase, mitochondrial-like [Glycine max]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 280/331 (84%), Positives = 303/331 (91%), Gaps = 4/331 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLSRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAADV HINT SEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIVK LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVKTLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQD 236
           DVVRAKTFYAGKANV VA VNVPVVGGHAGITILPLFSQATPKANL D+ IKALTKRTQD
Sbjct: 182 DVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQD 241

Query: 237 GGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           GGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQSTVTELP+FASKV
Sbjct: 242 GGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPYFASKV 301

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           RLGKNGVEEVLGLGPLSDFEQ+GLE L P  
Sbjct: 302 RLGKNGVEEVLGLGPLSDFEQQGLESLKPEL 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536645|ref|NP_001234001.1| mitochondrial malate dehydrogenase [Solanum lycopersicum] gi|52139816|gb|AAU29198.1| mitochondrial malate dehydrogenase [Solanum lycopersicum]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 278/332 (83%), Positives = 303/332 (91%), Gaps = 5/332 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AGA     RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGASYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEVAG+ G +QLGQALE +DVVIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVAGFAGEEQLGQALEGADVVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL+ E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSYEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGS TLS+AYAGAIFADACLKGLNGVPDVVEC+FVQS VTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSXTLSIAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASK 300

Query: 296 VRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           VRLGKNGVEEVLGLGPL+D+E++GLE L P  
Sbjct: 301 VRLGKNGVEEVLGLGPLNDYEKQGLEALKPEL 332

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634854|gb|ACU17786.1| unknown [Glycine max]

 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 279/331 (84%), Positives = 303/331 (91%), Gaps = 4/331 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSR 56
           M+ S+LRS+ + A    +    RGY+SE VP+RKVAVLGAAGGIGQPL+LLMKLNPLVS 
Sbjct: 2   MKPSMLRSLHSAATRGASHLSRRGYASEPVPERKVAVLGAAGGIGQPLSLLMKLNPLVSS 61

Query: 57  LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDD 116
           L+LYDIA TPGVAADV HINT SEV GY G+++LG+ALE +DVVIIPAGVPRKPGMTRDD
Sbjct: 62  LSLYDIAGTPGVAADVSHINTGSEVVGYQGDEELGKALEGADVVIIPAGVPRKPGMTRDD 121

Query: 117 LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
           LFNINAGIV+ LC+AIAKYCP+A+VNMISNPVNSTVPIAAEVFKKAGTY+EK+LFGVTTL
Sbjct: 122 LFNINAGIVETLCTAIAKYCPHALVNMISNPVNSTVPIAAEVFKKAGTYDEKRLFGVTTL 181

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQD 236
           DVVRAKTFYAGKANV VA VNVPVVGGHAGITILPLFSQATPKANL D+ IKALTKRTQD
Sbjct: 182 DVVRAKTFYAGKANVPVAGVNVPVVGGHAGITILPLFSQATPKANLDDDVIKALTKRTQD 241

Query: 237 GGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           GGTEVVEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDVVECSFVQSTVTELP+FASKV
Sbjct: 242 GGTEVVEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVVECSFVQSTVTELPYFASKV 301

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           RLGKNGVEEVLGLGPLSDFEQ+GLE L P  
Sbjct: 302 RLGKNGVEEVLGLGPLSDFEQQGLESLKPEL 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232468|ref|NP_188120.1| malate dehydrogenase 2 [Arabidopsis thaliana] gi|75311246|sp|Q9LKA3.1|MDHM2_ARATH RecName: Full=Malate dehydrogenase 2, mitochondrial; AltName: Full=mNAD-MDH 2; Flags: Precursor gi|8777485|dbj|BAA97065.1| NAD-dependent malate dehydrogenase [Arabidopsis thaliana] gi|15010582|gb|AAK73950.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|20147389|gb|AAM10404.1| AT3g15020/K15M2_16 [Arabidopsis thaliana] gi|332642083|gb|AEE75604.1| malate dehydrogenase 2 [Arabidopsis thaliana]

 Score =  559 bits (1440), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/323 (84%), Positives = 303/323 (93%)

Query: 1   MRSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY 60
            RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LY
Sbjct: 2   FRSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLY 61

Query: 61  DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI 120
           DIANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNI
Sbjct: 62  DIANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNI 121

Query: 121 NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVR 180
           NAGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVR
Sbjct: 122 NAGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVR 181

Query: 181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
           A+TFYAGK++VNVAEVNVPVVGGHAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTE
Sbjct: 182 ARTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTE 241

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           VVEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGK
Sbjct: 242 VVEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGK 301

Query: 301 NGVEEVLGLGPLSDFEQEGLEKL 323
           NGVEEVL LGPLSDFE+EGLE L
Sbjct: 302 NGVEEVLDLGPLSDFEKEGLEAL 324

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21388544|emb|CAD33240.1| putative mitochondrial NAD-dependent malate dehydrogenase [Solanum tuberosum]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 275/332 (82%), Positives = 303/332 (91%), Gaps = 5/332 (1%)

Query: 1   MRSSVLRSVKTLAKPAGA-----RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS 55
           MR+S+L+S+   +  AG      RG++S S P+RKVAVLGAAGGIGQPL+LLMKLNPLVS
Sbjct: 1   MRTSMLKSIVRRSSTAGESYVSRRGFASGSAPERKVAVLGAAGGIGQPLSLLMKLNPLVS 60

Query: 56  RLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRD 115
            L+LYDIA TPGVAADV HINTRSEV G+ G +QLG+ALE +D+VIIPAGVPRKPGMTRD
Sbjct: 61  SLSLYDIAGTPGVAADVSHINTRSEVVGFAGEEQLGKALEGADIVIIPAGVPRKPGMTRD 120

Query: 116 DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT 175
           DLFNINAGIVK LC+AIAKYCPNA+VNMISNPVNSTVPIAAEVFKKAGTY+EKKLFGVT 
Sbjct: 121 DLFNINAGIVKSLCTAIAKYCPNALVNMISNPVNSTVPIAAEVFKKAGTYDEKKLFGVTM 180

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQ 235
           LDVVRAKTFYAGKA VNVAEVN+PVVGGHAGITILPLFSQATPKANL++E+I ALTKRTQ
Sbjct: 181 LDVVRAKTFYAGKAKVNVAEVNLPVVGGHAGITILPLFSQATPKANLSNEEIVALTKRTQ 240

Query: 236 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASK 295
           DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVEC+FVQS VTELPFFASK
Sbjct: 241 DGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECAFVQSNVTELPFFASK 300

Query: 296 VRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           VRLGKNGVEEVLGLGPL+++E++GLE L P  
Sbjct: 301 VRLGKNGVEEVLGLGPLNEYEKQGLEALKPEL 332

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.899	0.944	0.795	1.6e-132
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.905	0.950	0.780	9.1e-132
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.826	0.836	0.658	1.7e-98
FB|FBgn0262559	336	Mdh2 "Malate dehydrogenase 2"	0.893	0.952	0.586	3e-92
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.896	0.796	0.585	8.1e-92
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.885	0.937	0.559	2.8e-89
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.885	0.937	0.559	3.6e-89
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.857	0.910	0.566	9.6e-89
UNIPROTKB|Q32LG3	338	MDH2 "Malate dehydrogenase, mi	0.885	0.937	0.559	9.6e-89
MGI|MGI:97050	338	Mdh2 "malate dehydrogenase 2,	0.885	0.937	0.562	9.6e-89

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1299 (462.3 bits), Expect = 1.6e-132, P = 1.6e-132
 Identities = 256/322 (79%), Positives = 285/322 (88%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS   + +    RG++SESVPDRKV +LGAAGGIGQPL+LLMKLNPLVS L+LYD
Sbjct:     3 RSMIVRSASPVKQGLLRRGFASESVPDRKVVILGAAGGIGQPLSLLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRS+V+GYMG+D LG+ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSQVSGYMGDDDLGKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+L  AIAKYCP A+VNMISNPVNSTVPIAAE+FKKAGTY+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLSIAIAKYCPQALVNMISNPVNSTVPIAAEIFKKAGTYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAGITILPLFSQA+P+ANL+D+ I+ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKSDVNVAEVNVPVVGGHAGITILPLFSQASPQANLSDDLIRALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 301
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVP+VVECSFVQST+TELPFFASKVRLGKN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPNVVECSFVQSTITELPFFASKVRLGKN 302

Query:   302 GVEEVLGLGPLSDFEQEGLEKL 323
             GVEEVL LGPLSDFE+EGLE L
Sbjct:   303 GVEEVLDLGPLSDFEKEGLEAL 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1292 (459.9 bits), Expect = 9.1e-132, P = 9.1e-132
 Identities = 253/324 (78%), Positives = 283/324 (87%)

Query:     2 RSSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD 61
             RS ++RS  +  +    R +SS SVP+RKVA+LGAAGGIGQPLALLMKLNPLVS L+LYD
Sbjct:     3 RSMLVRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYD 62

Query:    62 IANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNIN 121
             IANTPGVAADVGHINTRSEV GYMG+D L +ALE +D+VIIPAGVPRKPGMTRDDLFNIN
Sbjct:    63 IANTPGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNIN 122

Query:   122 AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
             AGIVK+LC+AIAKYCP+A++NMISNPVNSTVPIAAE+FKKAG Y+EKKLFGVTTLDVVRA
Sbjct:   123 AGIVKNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRA 182

Query:   182 KTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEV 241
             +TFY                  HAG+TILPLFSQATP+ANL+ + + ALTKRTQDGGTEV
Sbjct:   183 RTFYAGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEV 242

Query:   242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKN 301
             VEAKAGKGSATLSMAYAGA+FADACLKGLNGVPDV+ECS+VQST+TELPFFASKVRLGKN
Sbjct:   243 VEAKAGKGSATLSMAYAGALFADACLKGLNGVPDVIECSYVQSTITELPFFASKVRLGKN 302

Query:   302 GVEEVLGLGPLSDFEQEGLEKLNP 325
             GVEEVL LGPLSDFE+EGLE L P
Sbjct:   303 GVEEVLDLGPLSDFEKEGLEALKP 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
 Identities = 195/296 (65%), Positives = 229/296 (77%)

Query:    27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
             P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+AN PGV AD+ H++T + V G++G
Sbjct:    41 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLG 100

Query:    87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
               QL +AL   D+VIIPAGVPRKPGMTRDDLFNINAGIV+ L  AIAK CP AIVN+ISN
Sbjct:   101 QPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISN 160

Query:   147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
             PVNSTVPIAAEVFKKAGT++ KKL GVT LDVVRA TF                   HAG
Sbjct:   161 PVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDPREVEVPVVGGHAG 220

Query:   207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
             +TILPL SQ  P  +   ++I+ LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct:   221 VTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADAC 280

Query:   267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             L+GL G  ++VEC++V S VTELPFFASKVRLG+ G++EV GLGPL+++E+ GLEK
Sbjct:   281 LRGLRGDANIVECAYVASHVTELPFFASKVRLGRCGIDEVYGLGPLNEYERMGLEK 336

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

FB|FBgn0262559 Mdh2 "Malate dehydrogenase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 189/322 (58%), Positives = 240/322 (74%)

Query:     5 VLRSV-KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA 63
             +L+ V K LA   G R +S     + KV V GAAGGIGQPL+LL+K NPLV+ LALYDI 
Sbjct:     1 MLKQVTKQLALQ-GVRTFSVGQQNNYKVTVCGAAGGIGQPLSLLLKQNPLVTDLALYDIV 59

Query:    64 NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAG 123
             +TPGVAAD+ HI+T+S+ AG++G DQLG +L+ SDVV+IPAGVPRKPGMTRDDLFN+NAG
Sbjct:    60 HTPGVAADLSHIDTKSKTAGFIGADQLGDSLKGSDVVVIPAGVPRKPGMTRDDLFNVNAG 119

Query:   124 IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT 183
             I+KD+ ++IAK CP A+V +I+NPVN+ VPIAAE+ KKAG Y+ K+LFGV+TLDVVRA+ 
Sbjct:   120 IIKDISNSIAKNCPKALVAIITNPVNTCVPIAAEILKKAGVYDPKRLFGVSTLDVVRARA 179

Query:   184 FYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVE 243
             F                   H+G+TILP+ SQ+ P      + I+ LT R Q+ GTEVV+
Sbjct:   180 FIGHALGVDPQTVQIPVIGGHSGVTILPVLSQSQPLFKGNQDTIEKLTVRIQEAGTEVVK 239

Query:   244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
             AKAG GSATLSMAYAGA FA + LKGLNG  +V+ECS+VQSTVTE  FF++ + LGKNGV
Sbjct:   240 AKAGAGSATLSMAYAGARFAGSLLKGLNGEKNVIECSYVQSTVTEATFFSTPLVLGKNGV 299

Query:   304 EEVLGLGPLSDFEQEGLEKLNP 325
             +E LGL  L+D+E++ LE   P
Sbjct:   300 QENLGLPKLNDYEKKLLEAAIP 321

GO:0005739 "mitochondrion" evidence=IDA;TAS

GO:0030060 "L-malate dehydrogenase activity" evidence=ISS;TAS

GO:0005759 "mitochondrial matrix" evidence=ISS

GO:0006099 "tricarboxylic acid cycle" evidence=ISS;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0043067 "regulation of programmed cell death" evidence=IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0016615 "malate dehydrogenase activity" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0006919 "activation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0035209 "pupal development" evidence=IMP

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
 Identities = 189/323 (58%), Positives = 232/323 (71%)

Query:     3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
             +  LR   T A+ +  + Y  +     KVAVLGAAGGIGQPL+LL+K++PLVS L LYDI
Sbjct:    57 AKTLRGSVTKAQTSDKKPYGFKINASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDI 116

Query:    63 ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
             AN  GVAAD+ H NT S+V  + G  +L   L+D +VV+IPAGVPRKPGMTRDDLFNINA
Sbjct:   117 ANVKGVAADLSHCNTPSQVRDFTGPSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINA 176

Query:   123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              IVK L  A+A+ CPNA +++ISNPVNSTVPIAAEV KK G Y+ KKLFGVTTLDVVRA 
Sbjct:   177 NIVKTLVEAVAENCPNAFIHIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRAN 236

Query:   183 TFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
             TF                   HAGITILPL S+  P  N  DE+I+ LT R Q+ GTEVV
Sbjct:   237 TFVSQKKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVV 296

Query:   243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
             +AKAG GSATLSMAYA A F ++ L+ L+G  DV ECSFV+ST+T+LPFFAS+V++GKNG
Sbjct:   297 DAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSFVESTLTDLPFFASRVKIGKNG 356

Query:   303 VEEVL--GLGPLSDFEQEGLEKL 323
             +E V+   L  L+++EQ+ LE L
Sbjct:   357 LEAVIESDLQGLTEYEQKALEAL 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
 Identities = 179/320 (55%), Positives = 229/320 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLNP 325
              LG+G +S FE++ + +  P
Sbjct:   302 NLGIGKISPFEEKMIAEAIP 321

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 890 (318.4 bits), Expect = 3.6e-89, P = 3.6e-89
 Identities = 179/320 (55%), Positives = 228/320 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+    + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP+A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLNP 325
              LG+G +S FE++ + +  P
Sbjct:   302 NLGIGKISPFEEKMIAEAIP 321

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 175/309 (56%), Positives = 226/309 (73%)

Query:    12 LAKPAGA--RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA 69
             LA+PA    RG ++ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVA
Sbjct:     5 LARPAAVLCRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA 64

Query:    70 ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC 129
             AD+ HI TR+ V G++G +QL + L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L 
Sbjct:    65 ADLSHIETRANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLT 124

Query:   130 SAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXX 189
             +A AK+CP A++ +ISNPVNST+PI +EVFKK G YN  ++FGVTTLD+VRA TF     
Sbjct:   125 TACAKHCPEAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELK 184

Query:   190 XXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
                           HAG TI+PL SQ TPK +   + ++ LT R Q+ GTEVV+AKAG G
Sbjct:   185 GLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAG 244

Query:   250 SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
             SATLSMAYAGA F  + +  +NG   V+ECSFV+S  TE P+F++ + LGKNG+E+ LG+
Sbjct:   245 SATLSMAYAGARFVFSLVDAMNGKEGVIECSFVRSEETESPYFSTPLLLGKNGIEKNLGI 304

Query:   310 GPLSDFEQE 318
             G ++ FE++
Sbjct:   305 GKITPFEEK 313

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|Q32LG3 MDH2 "Malate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 179/320 (55%), Positives = 227/320 (70%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A++ +ISNPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA  F 
Sbjct:   122 ATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK     + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKDLDPARVNVPVIGGHAGKTIIPLISQCTPKVEFPQDQLTTLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEK 301

Query:   306 VLGLGPLSDFEQEGLEKLNP 325
              LG+G +S FE++ + +  P
Sbjct:   302 NLGIGKVSPFEEKMIAEAIP 321

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97050 Mdh2 "malate dehydrogenase 2, NAD (mitochondrial)" [Mus musculus (taxid:10090)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 180/320 (56%), Positives = 228/320 (71%)

Query:     9 VKTLAKPAGA---RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT 65
             +  LA+PAGA   R +S+ +  + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+T
Sbjct:     2 LSALARPAGAALRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT 61

Query:    66 PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV 125
             PGVAAD+ HI TR+ V GY+G +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV
Sbjct:    62 PGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIV 121

Query:   126 KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY 185
               L +A A++CP A+V +I+NPVNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF 
Sbjct:   122 ATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFV 181

Query:   186 XXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                               HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+AK
Sbjct:   182 AELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAK 241

Query:   246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             AG GSATLSMAYAGA F  + +  +NG   VVECSFVQS  TE  +F++ + LGK G+E+
Sbjct:   242 AGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVQSKETECTYFSTPLLLGKKGLEK 301

Query:   306 VLGLGPLSDFEQEGLEKLNP 325
              LG+G ++ FE++ + +  P
Sbjct:   302 NLGIGKITPFEEKMIAEAIP 321

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;ISA;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=ISO

GO:0006107 "oxaloacetate metabolic process" evidence=ISO

GO:0006108 "malate metabolic process" evidence=ISO;ISA

GO:0006475 "internal protein amino acid acetylation" evidence=ISO

GO:0006734 "NADH metabolic process" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=ISO;ISA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=ISO;IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0046554 "malate dehydrogenase (NADP+) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISA;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q43744	MDHM_BRANA	1, ., 1, ., 1, ., 3, 7	0.8092	0.9078	0.9530	N/A	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.6858	0.8268	0.8268	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.5930	0.8770	0.9289	yes	no
Q9KUT3	MDH_VIBCH	1, ., 1, ., 1, ., 3, 7	0.5780	0.8296	0.9549	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.5962	0.8770	0.9289	yes	no
B5XSQ7	MDH_KLEP3	1, ., 1, ., 1, ., 3, 7	0.5633	0.8268	0.9487	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.8502	0.9134	0.9423	N/A	no
P83373	MDHM_FRAAN	1, ., 1, ., 1, ., 3, 7	0.8487	0.8938	0.9439	N/A	no
Q9LKA3	MDHM2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8421	0.9022	0.9472	yes	no
Q0I491	MDH_HAES1	1, ., 1, ., 1, ., 3, 7	0.6013	0.8268	0.9517	yes	no
A3QB91	MDH_SHELP	1, ., 1, ., 1, ., 3, 7	0.56	0.8268	0.9517	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.6656	0.8687	0.8735	N/A	no
P17783	MDHM_CITLA	1, ., 1, ., 1, ., 3, 7	0.8896	0.8603	0.8876	N/A	no
B4F2A1	MDH_PROMH	1, ., 1, ., 1, ., 3, 7	0.5870	0.8072	0.9262	yes	no
Q9ZP06	MDHM1_ARATH	1, ., 1, ., 1, ., 3, 7	0.8226	0.9134	0.9589	no	no
Q8DEC2	MDH_VIBVU	1, ., 1, ., 1, ., 3, 7	0.5847	0.8268	0.9548	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.5930	0.8770	0.9289	yes	no
Q7MP97	MDH_VIBVY	1, ., 1, ., 1, ., 3, 7	0.5847	0.8268	0.9548	yes	no
Q5E875	MDH_VIBF1	1, ., 1, ., 1, ., 3, 7	0.5747	0.8296	0.9549	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.6891	0.8268	0.8268	N/A	no
A1S3C4	MDH_SHEAM	1, ., 1, ., 1, ., 3, 7	0.58	0.8268	0.9517	yes	no
A5UCQ1	MDH_HAEIE	1, ., 1, ., 1, ., 3, 7	0.6013	0.8268	0.9517	yes	no
A8H0U0	MDH_SHEPA	1, ., 1, ., 1, ., 3, 7	0.5647	0.8296	0.9549	yes	no
B0TUH8	MDH_SHEHH	1, ., 1, ., 1, ., 3, 7	0.5633	0.8268	0.9517	yes	no
A6TEQ3	MDH_KLEP7	1, ., 1, ., 1, ., 3, 7	0.5666	0.8268	0.9487	yes	no
P48364	MDH_MORS5	1, ., 1, ., 1, ., 3, 7	0.5483	0.8435	0.9679	N/A	no
A5UIX3	MDH_HAEIG	1, ., 1, ., 1, ., 3, 7	0.6013	0.8268	0.9517	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.5493	0.8882	0.9325	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.5899	0.8770	0.9289	yes	no
B1KGG7	MDH_SHEWM	1, ., 1, ., 1, ., 3, 7	0.5614	0.8296	0.9549	yes	no
A0KG16	MDH_AERHH	1, ., 1, ., 1, ., 3, 7	0.5733	0.8268	0.9517	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.5899	0.8770	0.9289	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.6593	0.8687	0.8735	N/A	no
B7VID0	MDH_VIBSL	1, ., 1, ., 1, ., 3, 7	0.5681	0.8296	0.9549	yes	no
Q42686	MDHM_CHLRE	1, ., 1, ., 1, ., 3, 7	0.6730	0.8631	0.8284	N/A	no
A0L113	MDH_SHESA	1, ., 1, ., 1, ., 3, 7	0.56	0.8268	0.9517	yes	no
Q12R11	MDH_SHEDO	1, ., 1, ., 1, ., 3, 7	0.5614	0.8296	0.9549	yes	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.5899	0.8770	0.9289	yes	no
Q6AW21	MDH_MORJA	1, ., 1, ., 1, ., 3, 7	0.5483	0.8435	0.9679	N/A	no
A7MWD3	MDH_VIBHB	1, ., 1, ., 1, ., 3, 7	0.5747	0.8296	0.9549	yes	no
A4SIV0	MDH_AERS4	1, ., 1, ., 1, ., 3, 7	0.57	0.8268	0.9517	yes	no
Q7MYW9	MDH_PHOLL	1, ., 1, ., 1, ., 3, 7	0.5844	0.8156	0.9358	yes	no
B0UUR6	MDH_HAES2	1, ., 1, ., 1, ., 3, 7	0.5980	0.8268	0.9517	yes	no
Q87SU7	MDH_VIBPA	1, ., 1, ., 1, ., 3, 7	0.5714	0.8296	0.9549	yes	no
Q4R568	MDHM_MACFA	1, ., 1, ., 1, ., 3, 7	0.5835	0.8770	0.9289	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
3rd Layer	1.1.1.37	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	0.0
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-147
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-146
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-133
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	2e-85
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	2e-59
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	3e-55
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	1e-52
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	3e-52
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	2e-39
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	1e-36
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	4e-34
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	1e-33
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	8e-33
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	2e-30
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	3e-27
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	4e-26
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	2e-25
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	3e-19
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	5e-19
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	2e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	6e-18
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	7e-17
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	5e-16
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	6e-16
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	3e-14
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	2e-13
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	8e-13
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	7e-12
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	6e-11
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	1e-06
TIGR01757	387	TIGR01757, Malate-DH_plant, malate dehydrogenase,	2e-06

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  631 bits (1629), Expect = 0.0
 Identities = 237/308 (76%), Positives = 267/308 (86%)

Query: 18  ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT 77
               +    P  KVAVLGAAGGIGQPL+LLMK+NPLVS L LYDIANTPGVAADV HINT
Sbjct: 8   RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT 67

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
            ++V G++G+DQLG AL+ +D+VIIPAGVPRKPGMTRDDLFNINAGIVK LC A+AK+CP
Sbjct: 68  PAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCP 127

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN 197
           NA+VN+ISNPVNSTVPIAAEV KKAG Y+ KKLFGVTTLDVVRA TF A K  ++ A+V+
Sbjct: 128 NALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVD 187

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           VPVVGGHAGITILPL SQATPK +  DE+I+ALTKR Q+GGTEVVEAKAG GSATLSMAY
Sbjct: 188 VPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY 247

Query: 258 AGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQ 317
           A A FADACL+GLNG  DVVECS+VQS VTELPFFASKVRLG+NGVEEVLGLGPLS++EQ
Sbjct: 248 AAARFADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQ 307

Query: 318 EGLEKLNP 325
           +GLE L P
Sbjct: 308 KGLEALKP 315

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  546 bits (1409), Expect = 0.0
 Identities = 202/296 (68%), Positives = 244/296 (82%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KLNPLVS LALYDI NTPGVAAD+ HINT ++V GY+G ++
Sbjct: 2   KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEE 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L +AL+ +DVV+IPAGVPRKPGMTRDDLFNINAGIV+DL +A+AK CP A++ +ISNPVN
Sbjct: 62  LKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KKAG Y+ K+LFGVTTLDVVRA TF A    ++ A+VNVPV+GGH+G+TI
Sbjct: 122 STVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           LPL SQ  P      E+I+ALT R Q GG EVV+AKAG GSATLSMAYAGA FA++ L+G
Sbjct: 182 LPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSLLRG 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP 325
           L G   V+EC++V+S VTE PFFA+ V LGKNGVE+ LGLG L+D+E++ LE   P
Sbjct: 242 LKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALP 297

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  417 bits (1073), Expect = e-147
 Identities = 172/301 (57%), Positives = 209/301 (69%), Gaps = 4/301 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  D-PTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLDV+R++TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           + L G   VVEC++V+       FFA  V LGKNGVEE L +G LS FEQ  LE +  T 
Sbjct: 240 RALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTL 299

Query: 328 H 328
            
Sbjct: 300 K 300

Length = 312

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  416 bits (1071), Expect = e-146
 Identities = 182/298 (61%), Positives = 225/298 (75%), Gaps = 1/298 (0%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+KL P VS L+LYDIA   GVAAD+ HI T + V G+ G + 
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L  AL+ +DVV+IPAGVPRKPGMTRDDLFN+NAGIVKDL +A+A+ CP A++ +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAEV KK G Y+  KLFGVTTLD+VRA TF A     +  EVNVPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ   K    ++ ++AL  R Q+ GTEVV+AKAG GSATLSMA+AGA F  + ++G
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVRG 240

Query: 270 LNGVPDVVECSFVQS-TVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPT 326
           L G   VVEC++V+S  VTE  FFA+ + LGKNGVE+ LG+G LS FE++ L    P 
Sbjct: 241 LKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPE 298

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  382 bits (983), Expect = e-133
 Identities = 178/294 (60%), Positives = 221/294 (75%), Gaps = 3/294 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGAAGGIGQPL+LL+K NP VS L+LYDI   PGVAAD+ HI+T ++V GY   + 
Sbjct: 10  KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGEL 69

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
             +AL  +D+V+I AGVPRKPGMTRDDLFN NA IV+DL +A+A   P AIV ++SNPVN
Sbjct: 70  WEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           STVPIAAE  KKAG Y+ +KLFGVTTLDVVRA+ F A    +N  +VNVPVVGGH+G+TI
Sbjct: 130 STVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVTI 189

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ T  + L +E ++ +T R Q GG EVV+AK G GSATLSMAYA A ++ + LK 
Sbjct: 190 VPLLSQ-TGLS-LPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTSVLKA 247

Query: 270 LNGVPDVVECSFVQSTVT-ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           L G   +VEC+FV+S +  E PFF+S V LGK GVE VL +GPL+ +E+E LE 
Sbjct: 248 LRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIGPLNAYEEELLEA 301

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  260 bits (667), Expect = 2e-85
 Identities = 118/305 (38%), Positives = 162/305 (53%), Gaps = 21/305 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA G +G  LA L+ L  L S L L DI      GVA D+ H          + 
Sbjct: 1   MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT 59

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   + L+ +D+V+I AGVPRKPGMTR DL   NA IVKD+  AIAKY P+AIV +++N
Sbjct: 60  GDGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           PV+    IA +    +G    + +   T LD  R +TF A K  V+  +V+  V+G H G
Sbjct: 120 PVDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-G 175

Query: 207 ITILPLFSQAT----PKANLA----DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
            T++PL+SQAT    P   L     +ED++ L +R ++ G E++EAK          A A
Sbjct: 176 DTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK--GAGTYYGPAAA 233

Query: 259 GAIFADACLKGLNGVPDVVECSFVQ-STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQ 317
            A   +A L+    V  +    ++      E  +F     LGKNGVEE+L L    D EQ
Sbjct: 234 LARMVEAILRDEKRV--LPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILELLLSDD-EQ 290

Query: 318 EGLEK 322
           E L+K
Sbjct: 291 EKLDK 295

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  188 bits (479), Expect = 2e-59
 Identities = 71/146 (48%), Positives = 90/146 (61%), Gaps = 6/146 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHINTRSEVAGYMG 86
            KVAV+GA GG+G  LA  + L  L   L L DI      GVA D+ H +T   V G +G
Sbjct: 1   VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVG 60

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
            D   +AL+D+DVV+I AGVPRKPGMTR DL N NAGI KD+  AIAK  P+AIV ++SN
Sbjct: 61  GDD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSN 119

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    IA +V   +G   E+ +  
Sbjct: 120 PVDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  182 bits (465), Expect = 3e-55
 Identities = 109/318 (34%), Positives = 166/318 (52%), Gaps = 52/318 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAG 83
           K++++GA G +G  LA L+ L  L   + L+DI    P G A D+          +++ G
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGD-VVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND   + +  SDVV+I AGVPRKPGM+RDDL  INA I+KD+   I KY P+AIV +
Sbjct: 62  --TNDY--EDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIV 117

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV++   +A     K   + + ++ G+   LD  R +TF A + NV+V +V   V+G
Sbjct: 118 VTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLG 173

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G +++PL   +T    P  +L + E +  + +RT+ GG E+V      GSA  + A 
Sbjct: 174 GH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231

Query: 258 AGAIFADA-------------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           + A   +A              L+G  GV DV              +    V+LGKNGVE
Sbjct: 232 SIAEMVEAILKDKKRVLPCSAYLEGEYGVKDV--------------YVGVPVKLGKNGVE 277

Query: 305 EVLGLGPLSDFEQEGLEK 322
           +++ L  L D E+   +K
Sbjct: 278 KIIEL-ELDDEEKAAFDK 294

Length = 307

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  171 bits (436), Expect = 1e-52
 Identities = 69/161 (42%), Positives = 92/161 (57%), Gaps = 16/161 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQATPKANLA 223
           TTLD  RA+TF A K  V+   VNV V+G H+G          +TI+PL SQ        
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 224 DEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV--PDVVECSF 281
           D +++ L +R Q+ G EV+EAKA  GS T SMAYA A  A A L+G  GV    V    +
Sbjct: 61  DWELEELIERVQNAGYEVIEAKA--GSTTYSMAYAAARIAKAILRGTGGVLSVGVYLDGY 118

Query: 282 VQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                 +  +F+  V LGK+GVE+V+ + PL+DFE+E LEK
Sbjct: 119 YG--SPDDIYFSVPVVLGKDGVEKVVEILPLNDFEREKLEK 157

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  174 bits (444), Expect = 3e-52
 Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 52/317 (16%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGH----INTRSEVAGY 84
           ++++GA G +G  LA L+ L  L   + L DI    P G A D+      + + ++V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGD-VVLLDIVEGLPQGKALDISQAAPILGSDTKVTG- 57

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             ND   + +  SDVV+I AG+PRKPGM+RDDL   NA IVK++   I KY PNAIV ++
Sbjct: 58  -TNDY--EDIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NP++        V  KA  +   ++ G+   LD  R + F A +  V+V +V   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 204 HAGITILPLFSQAT-----PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA 258
           H G T++PL   +T         +  E+I  + +RT++GG E+V      GSA  + A A
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA 228

Query: 259 GAIFADACLK-------------GLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            A   +A LK             G  G+ D+              F    V LGKNGVE+
Sbjct: 229 IAEMVEAILKDKKRVLPCSAYLEGEYGIKDI--------------FVGVPVVLGKNGVEK 274

Query: 306 VLGLGPLSDFEQEGLEK 322
           ++ L  L+D E+E  +K
Sbjct: 275 IIEL-DLTDEEKEAFDK 290

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  140 bits (355), Expect = 2e-39
 Identities = 96/298 (32%), Positives = 139/298 (46%), Gaps = 51/298 (17%)

Query: 31  VAVLGAAGGIGQPLALLM--KLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYM- 85
           +AV+GA G +G  LA  +      L   L LYDI      GVA D+        +A    
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAV--EPLADIKV 58

Query: 86  -GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
              D   +A +D+DVVII AGV RKPGM R DL   N  IVK++   I KY P+A + ++
Sbjct: 59  SITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVV 118

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGH 204
           SNPV+    I   +  +     ++K+ G+ TLD +R +   A K  V+  +V V ++G H
Sbjct: 119 SNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEH 174

Query: 205 AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFAD 264
            G + +P +S      ++AD  I++L     D G  +                 G     
Sbjct: 175 GG-SQVPDWSTVRIATSIADL-IRSLLN---DEGEILP---------------VGVR--- 211

Query: 265 ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               G  G+PD V        V  +P       +GKNGVEE + +  L+DFE E L+K
Sbjct: 212 --NNGQIGIPDDV--------VVSVP-----CIVGKNGVEEPIEV-GLTDFELEKLQK 253

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  134 bits (339), Expect = 1e-36
 Identities = 102/321 (31%), Positives = 160/321 (49%), Gaps = 31/321 (9%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTP-GVAADVGHINTRSEVAGYMGN 87
           K++++GA G IG  +ALL+    L   + LYD+    P G A D+ H +T       +  
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
               + ++DSDVV+I AGV RK  MTR+DL  IN  I+K +  ++ KYCPNA V  ++NP
Sbjct: 65  TNNYEDIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNP 124

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG 206
           ++       +VF++       K+ G+   LD  R +   A K  V+  +V+  V+GGH G
Sbjct: 125 LD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH-G 179

Query: 207 ITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             ++PL           S    K  + +++I  + K+T++ G E+V+    KGSA  + A
Sbjct: 180 DLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFAPA 238

Query: 257 YAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLGKNGVEEVLGLGPLS 313
            A     +A LK       V+ CS     Q     L F    V +G  G+E+V+ L  L+
Sbjct: 239 AAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNL-FVGVPVVIGGKGIEKVIEL-ELN 293

Query: 314 DFEQEGLEKLNPTFHIRKLFQ 334
             E+E  +K      I++L Q
Sbjct: 294 AEEKELFDK--SIESIQELTQ 312

Length = 319

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  127 bits (321), Expect = 4e-34
 Identities = 87/310 (28%), Positives = 141/310 (45%), Gaps = 38/310 (12%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGND 88
           + ++GA G +G  +A  +    L S L L D+      G A D+ H       A      
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSH-------ASAFLAT 52

Query: 89  Q---LGQALED---SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                G    D   +D+V+I AG PRKPG TR DL N NA I++ + + + KY P+AI+ 
Sbjct: 53  GTIVRGGDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIIL 112

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           ++SNPV+    I   V +K     + ++ G  T LD  R ++  A K +V+   V+  V+
Sbjct: 113 VVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVL 168

Query: 202 GGHAGITILPLFSQAT-------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
           G H G + +  +S AT         A     D++A+ +  +  G E++     KG+    
Sbjct: 169 GEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYG 224

Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELP--FFASKVRLGKNGVEEVLGLGPL 312
           +A A A    + L        V+  S VQ     +     +    +G+ GV  +L   PL
Sbjct: 225 IATAIADIVKSILLDERR---VLPVSAVQEGQYGIEDVALSVPAVVGREGVVRIL-EIPL 280

Query: 313 SDFEQEGLEK 322
           ++ E+  L+K
Sbjct: 281 TEDEEAKLQK 290

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score =  125 bits (316), Expect = 1e-33
 Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 28/307 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD------VGHINTRSE 80
           +K++V+GA G +G   A  +    L + L L D+      G A D      VG  +T+  
Sbjct: 2   KKISVIGA-GFVGATTAFRLAEKEL-ADLVLLDVVEGIPQGKALDMYEASPVGGFDTK-- 57

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
           V G   N+    A  +SD+V+I AG+PRKPGM+R+DL ++NAGIV+++   I ++ PN I
Sbjct: 58  VTG--TNNYADTA--NSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPI 113

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPV 200
           + ++SNP+++   +A +   K+G   E+ +     LD  R +TF A +  V+V +V   V
Sbjct: 114 IVVVSNPLDAMTYVAWQ---KSGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACV 170

Query: 201 VGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           +GGH G  ++PL   +T    P A+L + E I  + +RT+ GG E+V     +GSA  + 
Sbjct: 171 LGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNL-LKQGSAYYAP 228

Query: 256 AYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDF 315
           A +     +A LK    V         Q  +  + +    V LGKNGVE +  L  L   
Sbjct: 229 AASVVEMVEAILKDRKRVLPCAAYLDGQYGIDGI-YVGVPVILGKNGVEHIYEL-KLDQS 286

Query: 316 EQEGLEK 322
           E   L K
Sbjct: 287 ELALLNK 293

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  124 bits (312), Expect = 8e-33
 Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 42/323 (13%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHIN----TR 78
            +  RK++++G+ G IG  +A L+ L  L   + L+DI  N P G A D+ H N    + 
Sbjct: 3   MIKRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSN 60

Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIA 133
           S+V G   N+   + +  SDVVI+ AG+ ++PG +     RDDL  +NA I+ ++   I 
Sbjct: 61  SKVIG--TNNY--EDIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIK 116

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYAGKANVN 192
           KYCPNA V +I+NP++  V    ++ ++     + K+ G+   LD  R +T+ A K  VN
Sbjct: 117 KYCPNAFVIVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVN 172

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVV 242
             +V+  V+G H G  ++PL    T           K  +  E+I  + +RT++ G E+V
Sbjct: 173 PRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIV 231

Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLG 299
           +   G GSA  + A A    A+A LK       V+ CS     Q    ++ +  +   +G
Sbjct: 232 DL-LGTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDI-YMGTPAVIG 286

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
            NGVE+++ L  L+  EQ+  ++
Sbjct: 287 ANGVEKIIEL-DLTPEEQKKFDE 308

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score =  117 bits (295), Expect = 2e-30
 Identities = 98/340 (28%), Positives = 157/340 (46%), Gaps = 91/340 (26%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNP------LVSR-----------LALYDIANTPGVAADV 72
           KV+++GA+G +G   ALL+          L+SR           L +YD     G+ A++
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 73  GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI 132
              +  S+VAG             SD+VII AGVPRK GM+R DL   NA IVK     I
Sbjct: 62  KISSDLSDVAG-------------SDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 133 AKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT-LDVVRAKTFYAGKANV 191
           A++ P+  + +++NPV+     A    K++G +++ ++FG+ T LD +R K   A   NV
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 192 NVAEVNVPVVGGHAGITILPLFSQAT----PKANLA---DEDIKALTKRTQDGGTEVVEA 244
           +++EV+  ++G H G +++PL S  +    P        D D++ + +  ++ G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 245 KAGK--GSA------------------TLSMAYAGAI--FADACLKGLNGVPDVVECSFV 282
           K G   G A                  T+S    G I    D C+    GVP        
Sbjct: 224 KGGSEYGPASAISNLVRTIANDERRILTVSTYLEGEIDGIRDVCI----GVP-------- 271

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                        V+LGKNG+EE++ +  + D E+E   K
Sbjct: 272 -------------VKLGKNGIEEIVPI-EMDDDEREAFRK 297

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score =  109 bits (274), Expect = 3e-27
 Identities = 88/320 (27%), Positives = 140/320 (43%), Gaps = 50/320 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH----INTRSEVA 82
            KVA++GA G +G   A  + L  L S + L DI  A   G A D+ H    +      A
Sbjct: 1   MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 83  G-YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           G Y          + +DVV+I AG  +KPG TR DL   N  I K++   I KY P+AI+
Sbjct: 60  GDY-------ADCKGADVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAIL 112

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +++NPV+    +   V  K       ++ G  T LD  R +        V+   V+  +
Sbjct: 113 LVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYI 168

Query: 201 VGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
           +G H G + + ++S A                   +E  + + +  ++   E++E    K
Sbjct: 169 IGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RK 224

Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL------GKNG 302
           G+   ++  A A   +A L+  N V  V       S++ +  +    V L      G++G
Sbjct: 225 GATYYAIGLALARIVEAILRDENSVLTV-------SSLLDGQYGIKDVALSLPCIVGRSG 277

Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           VE VL   PLS+ E+E L  
Sbjct: 278 VERVLPP-PLSEEEEEALRA 296

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score =  105 bits (265), Expect = 4e-26
 Identities = 84/309 (27%), Positives = 136/309 (44%), Gaps = 43/309 (13%)

Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEV--AGYMGND 88
           AG +G   A  +    +   + L DI      G A D+ H    + T  ++    Y    
Sbjct: 4   AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY---- 59

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV 148
                 +D+D+V+I AG P+KPG TR +L   N  I+K +   + K   + I  + +NPV
Sbjct: 60  ---SDCKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPV 116

Query: 149 NSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           +    I   V  K   + + ++ G  T LD  R +   A K  V+   V+  ++G H G 
Sbjct: 117 D----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEH-GD 171

Query: 208 TILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           + +P++S AT            K    D D++ + K  +D   E++     KG+    + 
Sbjct: 172 SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG 228

Query: 257 YAGAIFADACLKGLNGVPDV---VECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLS 313
            A A   +A L   N V  V   ++  +    V    +      LG+NGVEE++ L PLS
Sbjct: 229 MAVARIVEAILHDENRVLPVSAYLDGEYGIKDV----YIGVPAVLGRNGVEEIIEL-PLS 283

Query: 314 DFEQEGLEK 322
           D E+E  +K
Sbjct: 284 DEEKEAFQK 292

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score =  103 bits (260), Expect = 2e-25
 Identities = 88/320 (27%), Positives = 134/320 (41%), Gaps = 51/320 (15%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           RKV ++GA G +G   A  +    +   L L DI N      +   +             
Sbjct: 1   RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDI-NEEKAEGEALDLEDALAFLPSPVKI 58

Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           + G     +D+D+V+I AG P+KPG TR DL   NA I+K +   I     + I  + SN
Sbjct: 59  KAGDYSDCKDADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHA 205
           PV+    +   V +K     + ++ G  T+LD  R +   A K NV+   V+  V+G H 
Sbjct: 119 PVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEH- 173

Query: 206 GITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS----- 250
           G +    +S  T           +  L++ D+  + +  +  G E++    GKG+     
Sbjct: 174 GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYYGI 230

Query: 251 ATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           AT       AI  D        A L G  G  DV              +      +G+NG
Sbjct: 231 ATALARIVKAILNDENAILPVSAYLDGEYGEKDV--------------YIGVPAIIGRNG 276

Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           VEEV+ L  L++ EQE  EK
Sbjct: 277 VEEVIEL-DLTEEEQEKFEK 295

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 86.6 bits (215), Expect = 3e-19
 Identities = 91/329 (27%), Positives = 131/329 (39%), Gaps = 68/329 (20%)

Query: 30  KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH-------INT 77
           K+ V+GA G +G   L   + L  L S + L D+    GVA     D  H        NT
Sbjct: 1   KLVVIGA-GHVGSAVLNYALALG-LFSEIVLIDV--NEGVAEGEALDFHHATALTYSTNT 56

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT--RDDLFNINAGIVKDLCSAIAKY 135
           +     Y           D+D+++I AG    PG T  R DL   NA I++++   I K 
Sbjct: 57  KIRAGDY-------DDCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKV 109

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
              A++ +I+NP++  V IAA  F     Y   K+ G  T LD  R +   A K  V+  
Sbjct: 110 TKEAVIILITNPLDIAVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPK 165

Query: 195 EVNVPVVGGHAGITILPLFSQATPKANLADE----------DIKALTKRTQDGGTEVVEA 244
            V   V+G H G    P++S         DE          D   L +       +V   
Sbjct: 166 NVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR 224

Query: 245 KAGKGSATLSMA---YAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFA 293
           K G  +A ++ +      AI  D          L G  G+ DV   +    TV       
Sbjct: 225 K-GWTNAGIAKSASRLIKAILLDERSILPVCTLLSGEYGLSDV---ALSLPTV------- 273

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               +G  G+E VL + PL ++E E L K
Sbjct: 274 ----IGAKGIERVLEI-PLDEWELEKLHK 297

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 86.1 bits (214), Expect = 5e-19
 Identities = 83/332 (25%), Positives = 131/332 (39%), Gaps = 75/332 (22%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGHI-----NTRSEV 81
            KV ++G  G +G   A  +    +   L + DI      G A D+ H       T+   
Sbjct: 7   NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
             Y          +D+D+V+I AG P+KPG TR DL   N  I K +   +     + I 
Sbjct: 66  GDY-------SDCKDADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIF 118

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV---------TTLDVVRAKTFYAGKANVN 192
            + SNPV+    I         TY   KL G          T+LD  R +   + K +V+
Sbjct: 119 LVASNPVD----IL--------TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVD 166

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEV 241
              V+  ++G H G T  P++S A                  +ED+  + +  +D   E+
Sbjct: 167 PRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEI 225

Query: 242 VEAKAGKGSATLSMAYA---GAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELP 290
           +E K G     ++MA A    AI  +        A L+G  G  DV              
Sbjct: 226 IEKK-GATYYGIAMALARITKAILNNENAVLPVSAYLEGQYGEEDV-------------- 270

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           +      + +NG+ E++ L PL+D E++    
Sbjct: 271 YIGVPAVVNRNGIREIVEL-PLNDDEKQKFAH 301

Length = 315

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 84.7 bits (210), Expect = 2e-18
 Identities = 103/325 (31%), Positives = 134/325 (41%), Gaps = 50/325 (15%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        L  K  P+V  L L DI         V       E  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGV-----AMELE 57

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +      +A +D D  ++    PRKPGM R DL + N  I K+   A+ K
Sbjct: 58  DCAFPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNK 117

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA+   K A     K    +T LD  RAK   A KA V V
Sbjct: 118 VAKKDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPV 174

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAK 245
           ++V NV + G H+  T +P F+ AT       E IK             Q  G  V+EA+
Sbjct: 175 SDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233

Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVP--DVVECSFVQST-----VTELPFFASKVRL 298
            G  SA  S A A     D     + G P  D V    V S      + E   F+  V  
Sbjct: 234 -GASSA-ASAANAA---IDHVRDWVTGTPEGDWVSMG-VYSDGNPYGIPEGIIFSFPVTC 287

Query: 299 GKNG-VEEVLGLGPLSDFEQEGLEK 322
             +G  E V GL PL DF +  L+ 
Sbjct: 288 KGDGEWEIVEGL-PLDDFVRGKLDA 311

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 83.1 bits (206), Expect = 6e-18
 Identities = 68/205 (33%), Positives = 88/205 (42%), Gaps = 28/205 (13%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
            V + GAAG IG  L        L     P++  L L DI   P + A  G      E  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI--PPAMKALEG---VVMELQ 54

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 + G +      +A +D DV I+    PRKPGM R DL   NA I K+   A+ K
Sbjct: 55  DCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNK 114

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
              P   V ++ NP N+   IA    K A     K    +T LD  RAK   A K  V V
Sbjct: 115 VAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVRV 171

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT 217
           ++V NV + G H+  T +P  S A 
Sbjct: 172 SDVKNVIIWGNHSN-TQVPDLSNAV 195

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 87/328 (26%), Positives = 136/328 (41%), Gaps = 66/328 (20%)

Query: 30  KVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           KV V+G    G+   +++L K   L   L L D+      G A D+ H       + ++ 
Sbjct: 5   KVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH------GSAFLK 56

Query: 87  N-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           N     D+      +S VVI+ AG  +  G +R DL   N  I K +   + KY PNAI+
Sbjct: 57  NPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAIL 116

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            ++SNPV+    I   V  K     + ++ G    LD  R +   A +  V  + V+  +
Sbjct: 117 LVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHGWI 172

Query: 201 VGGH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +G H             AG+ +  L        +   E  K + K+  D   EV+     
Sbjct: 173 IGEHGDSSVPVWSGVNVAGVRLQDLNPDIGTDKD--PEKWKEVHKQVVDSAYEVI---KL 227

Query: 248 KGSATLSMAYAGAIFADA-------------CLKGLNGVPDVVECSFVQSTVTELPFFAS 294
           KG  + ++  + A   DA              +KGL+G+ D V  S        LP    
Sbjct: 228 KGYTSWAIGLSVADLVDAILRNTGRVHSVSTLVKGLHGIEDEVFLS--------LP---- 275

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
              LG+NG+  V+   PL++ EQE L+K
Sbjct: 276 -CILGENGITHVIKQ-PLTEEEQEKLQK 301

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 73/261 (27%), Positives = 108/261 (41%), Gaps = 49/261 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSR-----------LALYDIANTPGVAADVGHINTR 78
           +V V GAAG I    +LL    P++++           L L DI         V      
Sbjct: 4   RVLVTGAAGQIA--YSLL----PMIAKGDVFGPDQPVILHLLDIPPALKALEGV-----V 52

Query: 79  SE--------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS 130
            E        +   +      +A +D DV I+   +PRK GM R DL   N  I K+   
Sbjct: 53  MELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGE 112

Query: 131 AIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA 189
           A+ KY   N  V ++ NP N+   I     K A +  ++    +T LD  RAK+  A K 
Sbjct: 113 ALDKYAKKNVKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKL 169

Query: 190 NVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTK-----------RTQDG 237
            V V++V NV + G H+  T  P  + AT + N   +  +   K             Q  
Sbjct: 170 GVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKR 228

Query: 238 GTEVVEAKAGKGSATLSMAYA 258
           G  V++A+  K S+ +S A A
Sbjct: 229 GAAVIKAR--KLSSAMSAAKA 247

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 93/333 (27%), Positives = 129/333 (38%), Gaps = 68/333 (20%)

Query: 30  KVAVLGAAGGIGQPLALLMKL---------NPLVSRLALYDIANT----PGVA---ADVG 73
           +VAV GAAG IG   +LL ++          P++  L L ++        GVA    D  
Sbjct: 4   RVAVTGAAGQIGY--SLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMELEDCA 59

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                  V      D    A +D+D  ++    PR PGM R DL   N  I      A+ 
Sbjct: 60  FPLLAEIVIT----DDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALN 115

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                +  V ++ NP N+   IA    K A          +T LD  RAK+  A KA V 
Sbjct: 116 DVASRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVP 172

Query: 193 VAEV-NVPVVGGHAGITILPLFSQATPKANLADEDI-------KALTKRTQDGGTEVVEA 244
           V +V N+ + G H+  T  P F+ AT     A E I              Q  G  +++A
Sbjct: 173 VTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA 231

Query: 245 KAGKGSATLSMAYA--------------GAIFADA-CLKGLNGVPDVVECSFVQSTVTEL 289
           + G  SA  S A A              G  F+ A    G  G+P+ +  SF        
Sbjct: 232 R-GASSAA-SAANAAIDHMRDWVLGTPEGDWFSMAVPSDGSYGIPEGLIFSF-------- 281

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           P     VR    G E V GL  + DF +E ++ 
Sbjct: 282 P-----VRSKGGGYEIVEGL-EIDDFAREKIDA 308

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 72.2 bits (177), Expect = 3e-14
 Identities = 72/257 (28%), Positives = 103/257 (40%), Gaps = 41/257 (15%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV- 81
           +V V GAAG IG  L        +L K  P++  L L DI     V   V       E+ 
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGV-----VMELM 53

Query: 82  -------AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                   G +       A  D DV I+    PRK GM R DL + N  I K+   A+ K
Sbjct: 54  DCAFPLLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDK 113

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   + +     A +   K    +T LD  RA    A +A V V
Sbjct: 114 LAKKDCKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPV 170

Query: 194 AEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR-----------TQDGGTEV 241
           ++V NV + G H+  T  P  + AT       + ++   K             Q  G  +
Sbjct: 171 SDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAI 229

Query: 242 VEAKAGKGSATLSMAYA 258
           + A+  K S+ LS A A
Sbjct: 230 IRAR--KLSSALSAAKA 244

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 69.8 bits (172), Expect = 2e-13
 Identities = 77/250 (30%), Positives = 107/250 (42%), Gaps = 44/250 (17%)

Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P+   L L +I   P + A  G      E  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPV--ILQLLEI--PPALKALEG---VVMELD 58

Query: 81  ------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                 +AG +  D    A +D+DV ++    PR PGM R DL   N  I      A+ +
Sbjct: 59  DCAFPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNE 118

Query: 135 YC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
               +  V ++ NP N+   IA    K A     +    +T LD  RA +  A KA V V
Sbjct: 119 VAARDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPV 175

Query: 194 AEV-NVPVVGGHAGITILPLFSQAT----PKANL-ADED------IKALTKRTQDGGTEV 241
           A++  + V G H+  T  P F  AT    P A +  D+       I  + KR    G  +
Sbjct: 176 ADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKR----GAAI 230

Query: 242 VEAKAGKGSA 251
           +EA+ G  SA
Sbjct: 231 IEAR-GASSA 239

Length = 326

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 68.0 bits (166), Expect = 8e-13
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNA 139
           +AG +   +L +A +D D   + A VP KPG  R DL   N  I K    A+++Y  P  
Sbjct: 45  LAGTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTV 104

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP 199
            V +I NPVN+   +A      A   + +    +  LD  RA +  A K  V V  +   
Sbjct: 105 KVLVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHV 161

Query: 200 VVGGHAGITILPLFSQAT 217
           VV G+   +++   + A 
Sbjct: 162 VVWGNHAESMVADLTHAE 179

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 80/323 (24%), Positives = 137/323 (42%), Gaps = 36/323 (11%)

Query: 22  SSESVPDR---KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--NTPGVAADVGH-- 74
           SS   P R   KV+V+G  G +G  +A  +    L   LAL D+      G   D+ H  
Sbjct: 28  SSPPSPTRRHTKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAA 86

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
               R+++               SD+ I+ AG  + PG +R +L   N  + + +   +A
Sbjct: 87  AFLPRTKILA----STDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELA 142

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
           KY P+ I+ ++SNPV+    +A   +K +G    + +   T LD  R +   A   +VN 
Sbjct: 143 KYSPDTILLIVSNPVDVLTYVA---WKLSGFPANRVIGSGTNLDSSRFRFLIADHLDVNA 199

Query: 194 AEVNVPVVGGH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTE 240
            +V   +VG H              G+ +L    +   +     E ++ + +   D   E
Sbjct: 200 QDVQAYIVGEHGDSSVALWSSVSVGGVPVLSFLEKQ--QIAYEKETLEEIHRAVVDSAYE 257

Query: 241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFAS-KVRLG 299
           V++    KG  + ++ Y+ A    + L+    +  V   +     + E   F S   +LG
Sbjct: 258 VIKL---KGYTSWAIGYSVASLVRSLLRDQRRIHPVSVLAKGFHGIDEGDVFLSLPAQLG 314

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
           +NGV  V+ +  L+D E E L K
Sbjct: 315 RNGVLGVVNV-HLTDEEAERLRK 336

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 62.5 bits (152), Expect = 6e-11
 Identities = 51/180 (28%), Positives = 86/180 (47%), Gaps = 19/180 (10%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS 150
           +A +  ++ ++  G PRK GM R D+ + N  I K   SA+ K+  P+  V +++NP N+
Sbjct: 54  EACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANT 113

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              I  E    A +  EK +  +T LD  RA    + +  V V++V NV + G H+  T 
Sbjct: 114 NALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS-TQ 169

Query: 210 LPLFSQATPKANLADEDIKALT-----------KRTQDGGTEVVEAKAGKGSATLSMAYA 258
            P  + AT K    ++ ++ L               Q  G  +++A+  K S+ LS A +
Sbjct: 170 YPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASS 227

Length = 309

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 49.8 bits (119), Expect = 1e-06
 Identities = 47/155 (30%), Positives = 67/155 (43%), Gaps = 7/155 (4%)

Query: 95  EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNSTVP 153
           +D++  ++    PR PGM R DL +IN  I  +   A+      N  V ++ NP N+   
Sbjct: 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNAL 234

Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPL 212
           I     K A     K    +T LD  RAK   A KA V   +V NV + G H+  T +P 
Sbjct: 235 IC---LKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHS-TTQVPD 290

Query: 213 FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           F  A        E I    K  ++  T  V+ + G
Sbjct: 291 FLNAKINGLPVKEVITD-HKWLEEEFTPKVQKRGG 324

Length = 444

>gnl|CDD|130818 TIGR01757, Malate-DH_plant, malate dehydrogenase, NADP-dependent

 Score = 48.8 bits (116), Expect = 2e-06
 Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS 150
           +  ED+D  ++    PR PGM R DL +IN  I  D   A+      N  V ++ NP N+
Sbjct: 116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNT 175

Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITI 209
              IA    K A     K    +T LD  RAK   A K+      V NV + G H+  T 
Sbjct: 176 NALIA---MKNAPNIPRKNFHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHS-TTQ 231

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
           +P F  A      A E IK  TK  ++  T  V+ + G
Sbjct: 232 VPDFVNAKIGGRPAKEVIKD-TKWLEEEFTPTVQKRGG 268

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
PLN00106	323	malate dehydrogenase	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
PLN02602	350	lactate dehydrogenase	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
PLN00135	309	malate dehydrogenase	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.97
PRK15076	431	alpha-galactosidase; Provisional	99.97
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.97
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.97
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.96
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.95
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.95
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.84
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.87
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	98.79
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.73
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.72
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.68
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.57
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.55
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.54
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.53
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.51
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.5
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.46
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.4
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.39
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.36
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.35
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.31
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.31
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.31
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.26
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.25
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.21
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.21
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.13
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.13
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.09
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.06
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.06
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.0
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	97.99
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.98
PLN02427	386	UDP-apiose/xylose synthase	97.98
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.88
PLN00198	338	anthocyanidin reductase; Provisional	97.88
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	97.87
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	97.86
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.86
PLN02206	442	UDP-glucuronate decarboxylase	97.85
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.82
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.78
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.78
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.76
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	97.76
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	97.73
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.73
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.72
PLN02650	351	dihydroflavonol-4-reductase	97.71
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.71
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	97.7
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	97.69
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.69
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	97.68
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.67
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.66
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.65
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	97.59
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	97.57
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	97.54
CHL00194	317	ycf39 Ycf39; Provisional	97.53
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.52
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.51
PLN02214	342	cinnamoyl-CoA reductase	97.5
PLN02778	298	3,5-epimerase/4-reductase	97.5
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.49
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	97.47
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	97.46
PLN02695	370	GDP-D-mannose-3',5'-epimerase	97.45
PLN03209	576	translocon at the inner envelope of chloroplast su	97.41
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.39
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	97.39
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	97.38
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	97.37
PRK06194	287	hypothetical protein; Provisional	97.37
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.32
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.29
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
PRK10675	338	UDP-galactose-4-epimerase; Provisional	97.27
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.26
PLN02572	442	UDP-sulfoquinovose synthase	97.24
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.21
PLN02583	297	cinnamoyl-CoA reductase	97.2
PRK07680	273	late competence protein ComER; Validated	97.19
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.19
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.19
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.17
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	97.17
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.17
PLN02260	668	probable rhamnose biosynthetic enzyme	97.13
PLN02240	352	UDP-glucose 4-epimerase	97.13
PF11975	232	Glyco_hydro_4C: Family 4 glycosyl hydrolase C-term	97.12
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.11
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.11
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.09
PRK07417	279	arogenate dehydrogenase; Reviewed	97.09
PLN02688	266	pyrroline-5-carboxylate reductase	97.07
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	97.01
PRK07201	657	short chain dehydrogenase; Provisional	96.98
PLN02253	280	xanthoxin dehydrogenase	96.97
PRK06545	359	prephenate dehydrogenase; Validated	96.96
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.96
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	96.95
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.94
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	96.94
PRK08655	437	prephenate dehydrogenase; Provisional	96.93
PRK08643	256	acetoin reductase; Validated	96.9
PRK14982	340	acyl-ACP reductase; Provisional	96.9
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.9
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	96.9
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	96.89
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.88
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.85
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	96.84
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	96.83
PLN02653	340	GDP-mannose 4,6-dehydratase	96.83
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	96.83
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.82
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.82
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.82
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.81
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	96.81
PRK08267	260	short chain dehydrogenase; Provisional	96.79
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	96.79
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.78
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	96.77
PRK06924	251	short chain dehydrogenase; Provisional	96.76
PRK07069	251	short chain dehydrogenase; Validated	96.75
PRK06407	301	ornithine cyclodeaminase; Provisional	96.72
PRK05876	275	short chain dehydrogenase; Provisional	96.71
PRK07102	243	short chain dehydrogenase; Provisional	96.71
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	96.7
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	96.7
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.7
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.69
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.68
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	96.68
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	96.68
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.67
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.67
PRK05875	276	short chain dehydrogenase; Provisional	96.67
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.67
PRK07326	237	short chain dehydrogenase; Provisional	96.66
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.66
PRK12480	330	D-lactate dehydrogenase; Provisional	96.66
PRK06172	253	short chain dehydrogenase; Provisional	96.65
PRK08278	273	short chain dehydrogenase; Provisional	96.65
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.65
PRK10538	248	malonic semialdehyde reductase; Provisional	96.63
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.63
PRK07067	257	sorbitol dehydrogenase; Provisional	96.63
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.63
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	96.62
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.61
PRK12367	245	short chain dehydrogenase; Provisional	96.6
PRK07832	272	short chain dehydrogenase; Provisional	96.6
PRK07806	248	short chain dehydrogenase; Provisional	96.6
PRK05717	255	oxidoreductase; Validated	96.58
PRK08507	275	prephenate dehydrogenase; Validated	96.58
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	96.56
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.56
PRK06141	314	ornithine cyclodeaminase; Validated	96.54
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.54
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.54
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.54
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	96.51
PLN02256	304	arogenate dehydrogenase	96.5
PRK07340	304	ornithine cyclodeaminase; Validated	96.5
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.49
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	96.49
COG2910	211	Putative NADH-flavin reductase [General function p	96.48
PLN02686	367	cinnamoyl-CoA reductase	96.48
PRK12828	239	short chain dehydrogenase; Provisional	96.46
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.46
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.44
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.43
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	96.42
PRK08618	325	ornithine cyclodeaminase; Validated	96.42
PRK05865	854	hypothetical protein; Provisional	96.42
PRK12937	245	short chain dehydrogenase; Provisional	96.41
PRK08265	261	short chain dehydrogenase; Provisional	96.4
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.4
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.4
PRK07576	264	short chain dehydrogenase; Provisional	96.39
PRK12829	264	short chain dehydrogenase; Provisional	96.39
PRK05854	313	short chain dehydrogenase; Provisional	96.38
PRK12320	699	hypothetical protein; Provisional	96.38
PRK08291	330	ectoine utilization protein EutC; Validated	96.38
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.37
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.37
PRK07063	260	short chain dehydrogenase; Provisional	96.35
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.35
PRK12939	250	short chain dehydrogenase; Provisional	96.34
PRK07856	252	short chain dehydrogenase; Provisional	96.33
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.32
PRK06482	276	short chain dehydrogenase; Provisional	96.32
PRK06823	315	ornithine cyclodeaminase; Validated	96.32
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.32
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.31
PRK07589	346	ornithine cyclodeaminase; Validated	96.3
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.3
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.3
PRK06180	277	short chain dehydrogenase; Provisional	96.28
PRK07831	262	short chain dehydrogenase; Provisional	96.28
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.28
PRK06914	280	short chain dehydrogenase; Provisional	96.27
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.27
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.26
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.25
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.25
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.25
PLN02712	667	arogenate dehydrogenase	96.25
PRK07024	257	short chain dehydrogenase; Provisional	96.24
PRK08251	248	short chain dehydrogenase; Provisional	96.24
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.23
PRK06182	273	short chain dehydrogenase; Validated	96.23
PRK05866	293	short chain dehydrogenase; Provisional	96.23
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.22
PRK09291	257	short chain dehydrogenase; Provisional	96.21
TIGR01746	367	Thioester-redct thioester reductase domain. It has	96.21
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.21
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.21
PLN02780	320	ketoreductase/ oxidoreductase	96.2
PRK07814	263	short chain dehydrogenase; Provisional	96.2
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.2
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.19
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.19
PRK13243	333	glyoxylate reductase; Reviewed	96.19
PRK05867	253	short chain dehydrogenase; Provisional	96.18
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.17
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.16
PLN02712	667	arogenate dehydrogenase	96.16
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.16
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	96.16
PRK08589	272	short chain dehydrogenase; Validated	96.16
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.15
PRK05650	270	short chain dehydrogenase; Provisional	96.15
PRK09135	249	pteridine reductase; Provisional	96.13
PRK07060	245	short chain dehydrogenase; Provisional	96.13
PRK08223	287	hypothetical protein; Validated	96.12
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.12
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.12
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.12
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.12
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.12
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.1
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.1
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.1
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.09
PRK06181	263	short chain dehydrogenase; Provisional	96.08
PRK08605	332	D-lactate dehydrogenase; Validated	96.08
PRK05479	330	ketol-acid reductoisomerase; Provisional	96.07
PRK06101	240	short chain dehydrogenase; Provisional	96.07
PRK05855	582	short chain dehydrogenase; Validated	96.06
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.06
PRK06199	379	ornithine cyclodeaminase; Validated	96.06
PRK07109	334	short chain dehydrogenase; Provisional	96.06
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.05
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	96.05
PRK07478	254	short chain dehydrogenase; Provisional	96.05
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.04
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.03
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.02
PRK06197	306	short chain dehydrogenase; Provisional	96.02
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.02
PRK08339	263	short chain dehydrogenase; Provisional	96.01
PRK06057	255	short chain dehydrogenase; Provisional	96.01
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.99
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	95.99
PRK08818	370	prephenate dehydrogenase; Provisional	95.98
PRK06138	252	short chain dehydrogenase; Provisional	95.97
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.96
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.94
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.94
PRK07774	250	short chain dehydrogenase; Provisional	95.93
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	95.93
PRK07574	385	formate dehydrogenase; Provisional	95.92
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	95.92
PRK06398	258	aldose dehydrogenase; Validated	95.89
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.88
PRK06198	260	short chain dehydrogenase; Provisional	95.87
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	95.87
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.87
PRK12742	237	oxidoreductase; Provisional	95.87
PRK13304	265	L-aspartate dehydrogenase; Reviewed	95.86
PRK12827	249	short chain dehydrogenase; Provisional	95.85
PRK06841	255	short chain dehydrogenase; Provisional	95.84
PRK06701	290	short chain dehydrogenase; Provisional	95.83
PRK07677	252	short chain dehydrogenase; Provisional	95.8
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.78
PRK07454	241	short chain dehydrogenase; Provisional	95.78
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.77
PRK09134	258	short chain dehydrogenase; Provisional	95.77
PRK09186	256	flagellin modification protein A; Provisional	95.77
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.76
PRK06139	330	short chain dehydrogenase; Provisional	95.76
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	95.75
PRK05993	277	short chain dehydrogenase; Provisional	95.75
PRK07074	257	short chain dehydrogenase; Provisional	95.74
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.74
PRK07890	258	short chain dehydrogenase; Provisional	95.73
PRK06196	315	oxidoreductase; Provisional	95.73
PRK07825	273	short chain dehydrogenase; Provisional	95.73
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.73
PRK05884	223	short chain dehydrogenase; Provisional	95.72
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.72
PRK06046	326	alanine dehydrogenase; Validated	95.72
PRK12744	257	short chain dehydrogenase; Provisional	95.71
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	95.7
PRK09072	263	short chain dehydrogenase; Provisional	95.7
PLN02260	668	probable rhamnose biosynthetic enzyme	95.69
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.69
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.69
PRK06128	300	oxidoreductase; Provisional	95.68
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	95.67
PRK08263	275	short chain dehydrogenase; Provisional	95.66
PLN02928	347	oxidoreductase family protein	95.66
PRK12746	254	short chain dehydrogenase; Provisional	95.65
PRK12935	247	acetoacetyl-CoA reductase; Provisional	95.65
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.65
PRK08219	227	short chain dehydrogenase; Provisional	95.64
PRK05599	246	hypothetical protein; Provisional	95.64
PRK07904	253	short chain dehydrogenase; Provisional	95.64
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	95.63
PRK08703	239	short chain dehydrogenase; Provisional	95.62
PRK12747	252	short chain dehydrogenase; Provisional	95.62
PRK12743	256	oxidoreductase; Provisional	95.61
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	95.61
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.6
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.59
PRK08324	681	short chain dehydrogenase; Validated	95.59
PRK09242	257	tropinone reductase; Provisional	95.59
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.59
PRK06179	270	short chain dehydrogenase; Provisional	95.59
PRK00048	257	dihydrodipicolinate reductase; Provisional	95.58
PLN02996	491	fatty acyl-CoA reductase	95.57
PRK07062	265	short chain dehydrogenase; Provisional	95.57
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.56
PLN00016	378	RNA-binding protein; Provisional	95.55
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	95.55
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.54
PRK06949	258	short chain dehydrogenase; Provisional	95.53
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.52
PLN03139	386	formate dehydrogenase; Provisional	95.5
PRK08226	263	short chain dehydrogenase; Provisional	95.49
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.47
PRK08277	278	D-mannonate oxidoreductase; Provisional	95.46
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.44
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	95.44
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.43
PRK09009	235	C factor cell-cell signaling protein; Provisional	95.42
PRK08264	238	short chain dehydrogenase; Validated	95.42
PRK06484	520	short chain dehydrogenase; Validated	95.42
PRK08862	227	short chain dehydrogenase; Provisional	95.41
PRK08628	258	short chain dehydrogenase; Provisional	95.4
KOG0409	327	consensus Predicted dehydrogenase [General functio	95.39
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	95.38
PRK06500	249	short chain dehydrogenase; Provisional	95.37
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	95.36
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.36
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.35
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.33
PRK06523	260	short chain dehydrogenase; Provisional	95.32
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	95.31
PRK05872	296	short chain dehydrogenase; Provisional	95.3
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.29
PRK07985	294	oxidoreductase; Provisional	95.29
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	95.29
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.26
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	95.25
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	95.24
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	95.19
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.18
PRK06114	254	short chain dehydrogenase; Provisional	95.17
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.17
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.17
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	95.16
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	95.15
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	95.14
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.12
PRK07035	252	short chain dehydrogenase; Provisional	95.05
PRK06953	222	short chain dehydrogenase; Provisional	95.05
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.05
PRK06484	520	short chain dehydrogenase; Validated	95.04
PRK06940	275	short chain dehydrogenase; Provisional	95.03
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	95.01
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	95.01
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	94.99
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.99
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.99
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.98
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	94.97
PRK05693	274	short chain dehydrogenase; Provisional	94.95
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.94
PRK12824	245	acetoacetyl-CoA reductase; Provisional	94.93
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.91
PRK06125	259	short chain dehydrogenase; Provisional	94.9
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.89
PLN02383	344	aspartate semialdehyde dehydrogenase	94.88
PRK08177	225	short chain dehydrogenase; Provisional	94.88
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	94.86
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	94.86
PRK07201	657	short chain dehydrogenase; Provisional	94.85
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	94.85
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.85
PRK07578	199	short chain dehydrogenase; Provisional	94.83
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	94.82
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.82
PRK09496	453	trkA potassium transporter peripheral membrane com	94.79
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	94.78
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.77
PRK07877	722	hypothetical protein; Provisional	94.77
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.74
PRK03562	621	glutathione-regulated potassium-efflux system prot	94.74
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	94.73
PRK14851	679	hypothetical protein; Provisional	94.71
PRK07411	390	hypothetical protein; Validated	94.68
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.61
PLN00203	519	glutamyl-tRNA reductase	94.57
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	94.56
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	94.55
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	94.55
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	94.55
PRK06947	248	glucose-1-dehydrogenase; Provisional	94.51
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	94.49
PRK06719	157	precorrin-2 dehydrogenase; Validated	94.48
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.47
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	94.39
PRK13940	414	glutamyl-tRNA reductase; Provisional	94.38
TIGR00036	266	dapB dihydrodipicolinate reductase.	94.38
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.37
PTZ00075	476	Adenosylhomocysteinase; Provisional	94.37
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	94.36
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.36
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	94.33
PRK07577	234	short chain dehydrogenase; Provisional	94.33
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.28
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.27
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	94.18
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.14
PRK14852	989	hypothetical protein; Provisional	94.13
PRK06436	303	glycerate dehydrogenase; Provisional	94.11
PLN02494	477	adenosylhomocysteinase	94.09
PLN02306	386	hydroxypyruvate reductase	94.04
PRK13529	563	malate dehydrogenase; Provisional	94.04
PRK12938	246	acetyacetyl-CoA reductase; Provisional	94.02
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	94.02
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	93.99
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.99
PRK06123	248	short chain dehydrogenase; Provisional	93.97
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.97
PRK07775	274	short chain dehydrogenase; Provisional	93.95
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.94
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	93.92
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	93.9
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.9
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	93.89

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.7e-66  Score=496.96  Aligned_cols=306  Identities=59%  Similarity=0.911  Sum_probs=270.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~  109 (358)
                      ||+||||+|+||+++++.|+.+++++||+|+|++++.|+++||+|...+.++..+++.+|++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999988889999999987544566433223567899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-HHHHhCCCCCCceEeeccccHHHHHHHHHHH
Q 018314          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (358)
Q Consensus       110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~t~lds~R~~~~la~~  188 (358)
                      +|++|+|++..|++|++++++.|.+++|++++|++|||+|++++++.+ +++.+| +|++||||+|.|||+||++++|++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg-~p~~rViG~g~LDsaR~r~~la~~  159 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGV-YDPNKLFGVTTLDIVRANTFVAEL  159 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcC-CChHHEEeeecchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999995553333 466777 999999999889999999999999


Q ss_pred             cCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHc
Q 018314          189 ANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLK  268 (358)
Q Consensus       189 l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~  268 (358)
                      +|+++++|+++||||||++++||+||++++...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|++
T Consensus       160 l~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ail~  239 (312)
T TIGR01772       160 KGKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLSLVR  239 (312)
T ss_pred             hCCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHHHHH
Confidence            99999999999999998768999999998644466667899999999999999997668899999999999999999997


Q ss_pred             cCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhhhhHH
Q 018314          269 GLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKLFQIL  336 (358)
Q Consensus       269 ~~~~~~~v~~~s~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~~~~~  336 (358)
                      +..+++.++|+++++|+| .+|+|+|+||++|++||++++++++|+++|+++|++|++.|+  .++++.++
T Consensus       240 ~~~d~~~v~~~s~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~~~~g~~~~  310 (312)
T TIGR01772       240 GLKGEEGVVECAYVESDGVTEATFFATPLLLGKNGVEKRLGIGKLSSFEEKMLNGALPELKKNIKKGEEFV  310 (312)
T ss_pred             hhCCCccEEEEEEEccCCCcCceEEEEEEEEcCCeeEEEEccCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            544445688988889888 789999999999999999999886799999999999999998  44444443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=8e-66  Score=492.91  Aligned_cols=298  Identities=66%  Similarity=1.013  Sum_probs=267.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+||||+|+||+++++.|+.+++.+||+|+|++.++|+++||+|+..+.+++...+++|++++++|||+||++||.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999998678999999999754566653233566799999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-HHHHhCCCCCCceEeeccccHHHHHHHHHH
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-VFKKAGTYNEKKLFGVTTLDVVRAKTFYAG  187 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~~~~sg~~~~~kviG~t~lds~R~~~~la~  187 (358)
                      ++|++|+|++..|+++++++++.|.+++|++|+|++|||+|+|++++.+ +++.+| +|++||||+|.|||+|+++++|+
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~-~p~~rviG~~~LDs~R~~~~la~  159 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGV-YDPKRLFGVTTLDVVRANTFVAE  159 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcC-CCHHHEEeeechHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999665443 367777 99999999988999999999999


Q ss_pred             HcCCCCCCCceEEEeec-CCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHH
Q 018314          188 KANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (358)
Q Consensus       188 ~l~v~~~~v~~~v~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ai  266 (358)
                      ++|+++++|+++||||| |+ ++||+||++.+...+++++++++.++++++|++|++.|.|||+|+||+|.++++++++|
T Consensus       160 ~l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~aI  238 (310)
T cd01337         160 LLGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANSL  238 (310)
T ss_pred             HhCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHHH
Confidence            99999999999999999 77 89999999987555666678999999999999999986678999999999999999999


Q ss_pred             HccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314          267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH  328 (358)
Q Consensus       267 l~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~  328 (358)
                      ++++++++.++++++++++-.+|+|+|+||++|++||++++++++|+++|+++|++|++.|+
T Consensus       239 l~~~~~~~~~~~~s~~~~~g~~~v~~s~P~~ig~~Gv~~i~~l~~L~~~E~~~l~~S~~~i~  300 (310)
T cd01337         239 LRGLKGEKGVIECAYVESDVTEAPFFATPVELGKNGVEKNLGLGKLNDYEKKLLEAALPELK  300 (310)
T ss_pred             HHhcCCCcceEEEEEEeccCCCceEEEEEEEEeCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            98866655677888766543578999999999999999999883499999999999999998

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=9.7e-66  Score=487.78  Aligned_cols=288  Identities=43%  Similarity=0.614  Sum_probs=262.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC--ccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||| |+||+++++.|+.+++.+|++|||+++  ++|.++||.|+.+.  ..++... +.| +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence            59999998 999999999998788878999999996  79999999999742  3344432 234 68999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~  183 (358)
                      |.||||||+|+|++..|++|+++++++|.+++||++++++|||+|+|||++   |+.+| +|++||||+ |.||++||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~---~k~sg-~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA---MKFSG-FPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH---HHhcC-CCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987   89999 999999999 8999999999


Q ss_pred             HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-------CCHHHHHHHHHHHhcCcceEEeeccCCCCccchH
Q 018314          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (358)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~  255 (358)
                      ++|+++++++++|+++|+|+||+ ++||+||++++++ |       .++++++++.++|+++|++|+++| |.| ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            99999999999999999999998 8999999999975 2       233568899999999999999987 444 99999


Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       256 A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      |.|+++++++|++|++   +++|++ +++|+| ++|+|||+|+++|++|+++++++ +|+++|+++|++|++.|+.+
T Consensus       231 A~a~a~~~~ail~d~~---~vl~~s~~l~G~yg~~dv~~gvP~~lg~~Gv~~iie~-~l~~~E~~~l~~s~~~lk~~  303 (313)
T COG0039         231 AAALARMVEAILRDEK---RVLPVSVYLDGEYGVEDVYFGVPAVLGKNGVEEILEL-LLSDDEQEKLDKSAEELKKN  303 (313)
T ss_pred             HHHHHHHHHHHHcCCC---ceEEEEEeecCccCcCCeEEEeeEEEcCCCcEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999973   588886 689999 88999999999999999999999 99999999999999999843

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=3.6e-63  Score=477.09  Aligned_cols=300  Identities=75%  Similarity=1.146  Sum_probs=272.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ++.||+||||+|+||+++++.|++++..+||+|+|++++.++++||.|+.....+..+++++|++++++|||+||++||.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            45699999988999999999999999999999999988889999999998655666544567788999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC----cchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN----STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d----~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      |+++|++|.+++..|+++++++++.+++++|+++++++|||+|    ++++.+   ++.+| +||+|+||+|.||++||+
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~---~~~s~-~p~~~viG~~~LDs~Rl~  172 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVL---KKAGV-YDPKKLFGVTTLDVVRAN  172 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH---HHcCC-CCcceEEEEecchHHHHH
Confidence            9999999999999999999999999999999999999999999    666544   67777 999999999889999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHH
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIF  262 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~l  262 (358)
                      +++|+++|+++.+|+++|+||||++++||+||++.+...+++++++++.++++++|++|+++|.|||+|+||+|.+++++
T Consensus       173 ~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a~~~i  252 (323)
T PLN00106        173 TFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYAAARF  252 (323)
T ss_pred             HHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHHHHHH
Confidence            99999999999999999999997668999999997654566777899999999999999997657899999999999999


Q ss_pred             HHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          263 ADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       263 i~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      +++|++++++++.++|+++++++|.+++|||+||+||++|+++++++++|+++|+++|++|++.|++.
T Consensus       253 i~ail~~~~~~~~v~~~s~~~~~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~S~~~i~~~  320 (323)
T PLN00106        253 ADACLRGLNGEADVVECSYVQSEVTELPFFASKVRLGRNGVEEVLGLGPLSEYEQKGLEALKPELKAS  320 (323)
T ss_pred             HHHHHhccCCCceEEEEEEECcccCCceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            99999987766678999988777643499999999999999999988689999999999999999854

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.8e-63  Score=477.28  Aligned_cols=284  Identities=26%  Similarity=0.373  Sum_probs=258.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-C--ccEEEEecCCccccccCCCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ||+|||| |+||+++|+.|+.+++++||+|+|+++  ++|+++||+|+.. .  ..++.+.  +| +++++|||+||++|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            8999998 999999999999999999999999987  7899999999753 2  2455543  34 68999999999999


Q ss_pred             CCCCCCCCC--HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          105 GVPRKPGMT--RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       105 g~~~~~g~~--r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      |.|+++|++  |+|++..|++|++++++.|.+++|++++|++|||+|+||+++   ++.+| +|++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA---ATEFD-YPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH---HHHhC-cChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999999987   78998 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC---------CHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL---------ADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~---------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      ++++|+++|+++++|+++||||||+ +++|+||++++++ ++         ++++++++.++++++|++|++   +||+|
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~KG~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFN---RKGWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHH---ccCee
Confidence            9999999999999999999999998 8999999999864 21         223478999999999999998   57899


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|++|.++++++++|+++.+   .++|++ +++|+| ++|+|+|+||+||++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~ia~a~~~ii~ail~d~~---~v~~vsv~~~G~yg~~~v~~svP~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~i~~  304 (307)
T cd05290         229 NAGIAKSASRLIKAILLDER---SILPVCTLLSGEYGLSDVALSLPTVIGAKGIERVLEI-PLDEWELEKLHKSAKAIRE  304 (307)
T ss_pred             hHHHHHHHHHHHHHHHhCCC---eEEEEEEeeCCccCCCCEEEEEEEEEeCCCceEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998863   578876 568888 68999999999999999999998 9999999999999999984

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-62  Score=470.12  Aligned_cols=299  Identities=58%  Similarity=0.879  Sum_probs=269.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +|.||+||||+|+||+++++.|+..+..+||+|+|++.+.++++||+|+.....+...++..+.+++++|||+||+++|.
T Consensus         7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~   86 (321)
T PTZ00325          7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV   86 (321)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence            45699999988999999999999999999999999955899999999987644555433223436899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH-HHHHHhCCCCCCceEeeccccHHHHHHHH
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-EVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~-~~~~~sg~~~~~kviG~t~lds~R~~~~l  185 (358)
                      |++++++|.+++..|+++++++++.|++++|+++++++|||+|+++++++ .+++.+| +||+||||++.|||+||++++
T Consensus        87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg-~p~~~viG~g~LDs~R~r~~l  165 (321)
T PTZ00325         87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGV-YDPRKLFGVTTLDVVRARKFV  165 (321)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccC-CChhheeechhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999874 2346677 999999999779999999999


Q ss_pred             HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (358)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a  265 (358)
                      |+++|++|++|+++||||||++++||+||++  +.++++++++++.++++++|++|++.|.|||+|+||+|.++++++++
T Consensus       166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~--g~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~a  243 (321)
T PTZ00325        166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWSTS  243 (321)
T ss_pred             HHHhCcChhheEEEEEeecCCcccccchhcc--CCCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHH
Confidence            9999999999999999999984699999999  45787778999999999999999998767799999999999999999


Q ss_pred             HHccCCCCCcEEEeeeecCCC-CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHH
Q 018314          266 CLKGLNGVPDVVECSFVQSTV-TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       266 il~~~~~~~~v~~~s~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      |+++..+++.++++++++++| .+|+|+|+||++|++|++++++ + +|+++|+++|++|++.|++
T Consensus       244 il~~~~~~~~v~~~~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~~-~L~~~E~~~l~~S~~~i~~  308 (321)
T PTZ00325        244 VLKALRGDKGIVECAFVESDMRPECPFFSSPVELGKEGVERVLPIG-PLNAYEEELLEAAVPDLKK  308 (321)
T ss_pred             HHhhcCCCCCeEEEEEEecCCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHHHHHHHHHHHHH
Confidence            998755455688888889988 6799999999999999999999 6 9999999999999999983

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.2e-62  Score=474.14  Aligned_cols=296  Identities=30%  Similarity=0.384  Sum_probs=263.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCcccccc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQAL   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al   94 (358)
                      ++|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+..+  ..++..   .+.++++
T Consensus         1 ~~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~---~~~~~~~   77 (323)
T TIGR01759         1 KKPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT---TDPEEAF   77 (323)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe---cChHHHh
Confidence            368899999988999999999999999999     999999954    69999999998732  223332   2337899


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHh-CCCCCCceEe
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFG  172 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~s-g~~~~~kviG  172 (358)
                      +|||+||++||.|+++||+|.|++..|+++++++++.|.+++| ++++|++|||+|+||+++   ++.+ | ||++||||
T Consensus        78 ~daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g-~p~~rViG  153 (323)
T TIGR01759        78 KDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA---SKNAPD-IPPKNFSA  153 (323)
T ss_pred             CCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcCC-CCHHHEEE
Confidence            9999999999999999999999999999999999999999998 999999999999999987   7889 7 99999999


Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEee
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~  244 (358)
                      +|.||++||++++|+++|+++++|+ .+||||||+ +++|+||++++++ +    ++++.  +++|.+++++++++|++ 
T Consensus       154 ~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~-  231 (323)
T TIGR01759       154 MTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIE-  231 (323)
T ss_pred             eeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHh-
Confidence            9999999999999999999999995 569999998 8999999999864 3    23332  68999999999999998 


Q ss_pred             ccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHH
Q 018314          245 KAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE  318 (358)
Q Consensus       245 ~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~  318 (358)
                        +||+++| ++|.++++++++|+++++. +.++|++ +++| +|  |+|+|||+||++|++|++++++ + +|+++|++
T Consensus       232 --~kG~t~~~~~a~a~~~iv~ail~~~~~-~~v~~~s~~~~g~~Yg~~~~v~~s~P~~lg~~Gv~~iv~~l-~L~~~E~~  307 (323)
T TIGR01759       232 --ARGASSAASAANAAIDHVRDWVTGTPE-GDWVSMGVYSDGNPYGIPEGIIFSFPVTCKGDGEWEIVEGL-PLDDFVRG  307 (323)
T ss_pred             --ccCCcchHHHHHHHHHHHHHHHcCCCC-CcEEEEEEEeCCcccCCCCCeEEEEEEEEcCCeeEEEcCCC-CCCHHHHH
Confidence              5688999 4779999999999999732 2588987 6788 88  4899999999999999999999 7 99999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018314          319 GLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       319 ~L~~s~~~L~~~~~~~  334 (358)
                      +|++|++.|++++.+|
T Consensus       308 ~l~~sa~~lk~~~~~~  323 (323)
T TIGR01759       308 KLDATEDELLEEKEEA  323 (323)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999888664

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=6e-62  Score=467.95  Aligned_cols=285  Identities=29%  Similarity=0.435  Sum_probs=258.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-C--ccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-R--SEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~--~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.+||+|||| |.||+++++.|+..++.+||+|||+++  +.|+++||+|+.. .  ..+..   ++| +++++|||+||
T Consensus         2 ~~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~---~~d-y~~~~~adivv   76 (312)
T cd05293           2 PRNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEA---DKD-YSVTANSKVVI   76 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEE---CCC-HHHhCCCCEEE
Confidence            3469999997 999999999999999999999999987  7899999999872 2  23432   345 46799999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R  180 (358)
                      +++|.|+++||+|.|++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|
T Consensus        77 itaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~k~sg-~p~~~viG~gt~Ld~~R  152 (312)
T cd05293          77 VTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA---WKLSG-LPKHRVIGSGCNLDSAR  152 (312)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH---HHHhC-CCHHHEEecCchHHHHH
Confidence            999999999999999999999999999999999999999999999999999887   78888 999999999 8999999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceEEeeccCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGK  248 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gk  248 (358)
                      +++++|+++++++++|+++||||||+ ++||+||++++++ +           .++++++++.++++++|++|++   +|
T Consensus       153 ~~~~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~k  228 (312)
T cd05293         153 FRYLIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIK---LK  228 (312)
T ss_pred             HHHHHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHH---hc
Confidence            99999999999999999999999998 8999999999864 2           1234588999999999999998   56


Q ss_pred             CCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 018314          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP  325 (358)
Q Consensus       249 g~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~  325 (358)
                      |+|+|++|.++++++++|+++.+   .++|++ +++|.|  ++|++||+||++|++|+++++++ +|+++|+++|++|++
T Consensus       229 g~t~~~~a~a~~~ii~ail~d~~---~~~~vsv~~~g~yg~~~d~~~svP~~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~  304 (312)
T cd05293         229 GYTSWAIGLSVADLVDAILRNTG---RVHSVSTLVKGLHGIEDEVFLSLPCILGENGITHVIKQ-PLTEEEQEKLQKSAD  304 (312)
T ss_pred             CCchHHHHHHHHHHHHHHHcCCC---eEEEEEEEeCCccCCCCCeEEEEeEEEeCCceEEEecC-CCCHHHHHHHHHHHH
Confidence            89999999999999999998864   577776 568877  58999999999999999999998 999999999999999


Q ss_pred             HHH
Q 018314          326 TFH  328 (358)
Q Consensus       326 ~L~  328 (358)
                      .|+
T Consensus       305 ~i~  307 (312)
T cd05293         305 TLW  307 (312)
T ss_pred             HHH
Confidence            998

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=9.2e-62  Score=441.45  Aligned_cols=290  Identities=26%  Similarity=0.409  Sum_probs=264.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC---CccEEEEecCCccccccCCCCE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      +.+..||+|+|+ |+||.+.++.+.++++.+|++|+|.++  ++|++|||+|...   .+++..   ..| +.+.+++++
T Consensus        17 ~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~D-y~~sa~S~l   91 (332)
T KOG1495|consen   17 EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKD-YSVSANSKL   91 (332)
T ss_pred             cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCc-ccccCCCcE
Confidence            344679999998 999999999999999999999999988  7999999999863   345554   346 578899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccH
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds  178 (358)
                      ||+|||..+++|++|++++++|+.|++.+.+.+.+|.||+++|++|||+|+|||++   ||.+| ||++||||. |+|||
T Consensus        92 vIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~---wKLSg-fP~nRViGsGcnLDs  167 (332)
T KOG1495|consen   92 VIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT---WKLSG-FPKNRVIGSGCNLDS  167 (332)
T ss_pred             EEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH---HHHcC-CcccceeccCcCccH
Confidence            99999999999999999999999999999999999999999999999999999986   89999 999999999 89999


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC------------CCCHHHHHHHHHHHhcCcceEEeecc
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      +|||++++++||++|.++++|++||||+ +.||+||...+.+            ..+++.|+++.++|.+.+|+|+++  
T Consensus       168 aRFryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayevikl--  244 (332)
T KOG1495|consen  168 ARFRYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKL--  244 (332)
T ss_pred             HHHHHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence            9999999999999999999999999999 8999999998742            256678999999999999999995  


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s  323 (358)
                       ||+|.|++|.++++++++|+.|.+   .+.|++ .+.|.|  .+|+|+|+||++|++|+..++.. +|+++|.++|++|
T Consensus       245 -KGyTswaIglsva~l~~ail~n~~---~i~~Vst~~kg~~gI~~dVflSlPc~l~~~Gi~~vv~~-~Lt~~E~akL~kS  319 (332)
T KOG1495|consen  245 -KGYTSWAIGLSVADLAQAILRNLR---RIHPVSTMVKGLYGIDDDVFLSLPCLLGANGITHVVKQ-KLTDEEVAKLKKS  319 (332)
T ss_pred             -cCchHHHHHHHHHHHHHHHHhCcC---ceeeeeeccccccCCCCceEEecceeecCCchhhhhcc-cCCHHHHHHHHHH
Confidence             599999999999999999999986   477777 467877  67999999999999999999999 9999999999999


Q ss_pred             HHHHHHHhh
Q 018314          324 NPTFHIRKL  332 (358)
Q Consensus       324 ~~~L~~~~~  332 (358)
                      ++.|. +.|
T Consensus       320 a~tl~-~~q  327 (332)
T KOG1495|consen  320 AKTLL-EAQ  327 (332)
T ss_pred             HHHHH-HHH
Confidence            99998 444

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=3.4e-61  Score=468.06  Aligned_cols=285  Identities=26%  Similarity=0.419  Sum_probs=258.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|||| |+||+++++.|+..++.+||+|+|+++  +.|+++||+|+.. ........ ++| +++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~-~~d-y~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILA-STD-YAVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEe-CCC-HHHhCCCCEEEECCC
Confidence            79999997 999999999999999999999999987  6899999999863 22233322 245 577999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~  184 (358)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++++| +|++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~---~k~sg-~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHHhC-CCHHHEEeecchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987   78898 999999999 69999999999


Q ss_pred             HHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|+++|+++++|+++||||||+ ++||+||++++++ +           +++++++++.+++++++++|++   +||+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~KG~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIK---LKGYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHh---cCCccH
Confidence            9999999999999999999998 8999999998853 2           3345578999999999999998   578999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC-C--CccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV-T--ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH  328 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~-~--~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~  328 (358)
                      |++|.++++++++|+++.+   .++|++. ++|+| .  +++|+|+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       267 ~gia~a~a~ii~ail~d~~---~v~~vsv~~~g~Yg~~~~~v~~s~P~~ig~~Gi~~i~~l-~L~~~E~~~l~~sa~~l~  342 (350)
T PLN02602        267 WAIGYSVASLVRSLLRDQR---RIHPVSVLAKGFHGIDEGDVFLSLPAQLGRNGVLGVVNV-HLTDEEAERLRKSAKTLW  342 (350)
T ss_pred             HHHHHHHHHHHHHHHhcCC---CeEEEEEecccccCCCCCCcEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            9999999999999999874   5888875 67888 3  7899999999999999999998 999999999999999998

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-60  Score=459.59  Aligned_cols=290  Identities=27%  Similarity=0.424  Sum_probs=262.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      .++++||+|||| |.||+++++.|+..++++||+|+|+++  ++|+++||.|+.. ..++...+  ++ +++++|||+||
T Consensus         3 ~~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~--~~-~~~~~~adivI   78 (315)
T PRK00066          3 KKQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYA--GD-YSDCKDADLVV   78 (315)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEe--CC-HHHhCCCCEEE
Confidence            345679999998 999999999999999999999999987  6899999999863 22445442  34 68899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R  180 (358)
                      ++||.|+++|++|.|++..|+++++++++.+++++|++|+|++|||+|++|+++   ++++| +|++||||+ |.||+.|
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~---~k~sg-~p~~~viG~gt~LDs~R  154 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT---WKLSG-FPKERVIGSGTSLDSAR  154 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH---HHHhC-CCHHHEeecCchHHHHH
Confidence            999999999999999999999999999999999999999999999999999876   78888 999999999 7999999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----------CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      +++.+|+++|+++++|+++|||+||+ +++|+||++++++ +          +++++++++.+++++++++|++   +||
T Consensus       155 ~~~~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kg  230 (315)
T PRK00066        155 FRYMLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIE---KKG  230 (315)
T ss_pred             HHHHHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHh---cCC
Confidence            99999999999999999999999998 8999999999863 1          3446688999999999999998   568


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      +++|++|.++++++++|+++.+   .++|++ +++|+| ++++|||+||++|++||++++++ +|+++|+++|++|++.|
T Consensus       231 ~t~~~~a~~~~~i~~ail~~~~---~v~~~sv~~~g~yg~~~v~~S~Pv~ig~~Gv~~i~~l-~L~~~E~~~L~~s~~~l  306 (315)
T PRK00066        231 ATYYGIAMALARITKAILNNEN---AVLPVSAYLEGQYGEEDVYIGVPAVVNRNGIREIVEL-PLNDDEKQKFAHSADVL  306 (315)
T ss_pred             eehHHHHHHHHHHHHHHHcCCC---eEEEEEEEeccccCCCCEEEEeEEEEeCCcEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999754   588887 468888 68999999999999999999998 99999999999999999


Q ss_pred             HHH
Q 018314          328 HIR  330 (358)
Q Consensus       328 ~~~  330 (358)
                      +..
T Consensus       307 ~~~  309 (315)
T PRK00066        307 KEI  309 (315)
T ss_pred             HHH
Confidence            844

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.5e-60  Score=433.97  Aligned_cols=322  Identities=69%  Similarity=1.035  Sum_probs=303.2

Q ss_pred             cccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC
Q 018314           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~   95 (358)
                      .-.+.|++.++++.||+|+||+|++|+.+.++|.+++.++++.|||+....|.+.||+|...+..+.+|++.+.++++++
T Consensus        16 ~~~~~~~~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~   95 (345)
T KOG1494|consen   16 GPKRVFSSGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALK   95 (345)
T ss_pred             CCcccccccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhc
Confidence            44566888888999999999999999999999999999999999999989999999999998889999988888999999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeecc
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~  175 (358)
                      +||+|||.||+||||||+|.|++..|+.|+++++..+.++||++.+.++|||++.+.+++++++|..|.|+|+|++|+|.
T Consensus        96 ~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTt  175 (345)
T KOG1494|consen   96 GADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTT  175 (345)
T ss_pred             CCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceeh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHcCCCC-CCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccch
Q 018314          176 LDVVRAKTFYAGKANVNV-AEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (358)
Q Consensus       176 lds~R~~~~la~~l~v~~-~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s  254 (358)
                      ||..|.++++++.++++| .+++++|+|+|.+.+++|++|+..+-..+++++++.|+.+++.+|.|+++.|.|+|++.+|
T Consensus       176 LDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLS  255 (345)
T KOG1494|consen  176 LDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLS  255 (345)
T ss_pred             hhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhh
Confidence            999999999999999999 5699999999988899999999988667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhh
Q 018314          255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKL  332 (358)
Q Consensus       255 ~A~a~~~li~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~  332 (358)
                      +|+|.++++.+++++.+++..++.|+|+....-+-.||+.|+++|++||+++..+++||++|++.|+.+..+|+  .+|+
T Consensus       256 MAyAga~fa~s~lrgl~G~~~v~ecafV~s~~~~~~fFaspv~Lg~~Gv~~v~~l~~lsd~E~~~l~~~~~eLk~sI~KG  335 (345)
T KOG1494|consen  256 MAYAGAKFADSLLRGLNGDEDVVECAFVASPVTELPFFATPVTLGKKGVEEVLGLGKLSDYEEKALEAAKPELKKSIEKG  335 (345)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEeEEeccccCccceeceEEecCCceeeecCCCccCHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999877788899987764356799999999999999999999999999999999999999  6677


Q ss_pred             hhHHH
Q 018314          333 FQILQ  337 (358)
Q Consensus       333 ~~~~~  337 (358)
                      +++++
T Consensus       336 v~F~~  340 (345)
T KOG1494|consen  336 VTFVK  340 (345)
T ss_pred             HHHHh
Confidence            66544

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=3.3e-61  Score=460.47  Aligned_cols=280  Identities=29%  Similarity=0.467  Sum_probs=254.5

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||| |+||+++++.|+..++++||+|+|+++  ++|+++||+|+..  ...++...  +| +++++|||+||++||.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~--~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS--GD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec--CC-HHHHCCCCEEEECCCCCC
Confidence            6898 999999999999999999999999987  7999999999863  22344432  34 689999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHH
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAG  187 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~  187 (358)
                      ++||+|.|++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA---WKLSG-FPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH---HHHhC-CCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887   78888 999999999 79999999999999


Q ss_pred             HcCCCCCCCceEEEeecCCcccccccccccCCC-C---C-------CHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314          188 KANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L-------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (358)
Q Consensus       188 ~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---~-------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A  256 (358)
                      ++++++++|+++|||+||+ +++|+||++++++ |   +       ++++++++.++++++|++|++   +||+|+|++|
T Consensus       153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~---~kG~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIIN---RKGATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh---cCCeeeHHHH
Confidence            9999999999999999998 8999999999864 2   2       133477999999999999999   5789999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH  328 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~  328 (358)
                      .++++++++|+++++   .++|++ +++|+| .+|+|||+||+||++|+++++++ +|+++|+++|++|++.|+
T Consensus       229 ~a~~~~i~ail~d~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~s~~~ik  298 (299)
T TIGR01771       229 MAVARIVEAILHDEN---RVLPVSAYLDGEYGIKDVYIGVPAVLGRNGVEEIIEL-PLSDEEKEAFQKSAETLK  298 (299)
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCEEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHHh
Confidence            999999999999864   588886 678888 56899999999999999999998 999999999999999987

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.5e-61  Score=462.60  Aligned_cols=295  Identities=26%  Similarity=0.354  Sum_probs=261.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~   95 (358)
                      +|+||+||||+|.||+++++.|+..++++     ||+|+|+++    ++|+++||+|+..  ...++.+  +++ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            57899999988999999999999999888     999999954    6899999999862  1234443  233 78999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      |||+||++||.|+++|++|.|++..|+++++++++.|.+++ |++++|++|||+|+||+++   ++.+|+||++||||+|
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~k~s~g~p~~rViG~t  156 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA---MKNAPDLPAENFTAMT  156 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH---HHHcCCCCHHHEEeee
Confidence            99999999999999999999999999999999999999988 7999999999999999987   7899449999999999


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceE-EEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEeecc
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~~  246 (358)
                      .||++||++++|+++++++++|+++ ||||||+ ++||+||++++++ +    +++++  ++++.+++++++++|++   
T Consensus       157 ~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---  232 (326)
T PRK05442        157 RLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIE---  232 (326)
T ss_pred             HHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHh---
Confidence            9999999999999999999999996 5899998 8999999999964 2    33433  67999999999999998   


Q ss_pred             CCCCccchHHHH-HHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHH
Q 018314          247 GKGSATLSMAYA-GAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLE  321 (358)
Q Consensus       247 gkg~t~~s~A~a-~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~  321 (358)
                      +||+++|++|.+ +++++++|+++.+ ++.++|++. ++|+|  ++++|||+||++| +|+++++. + +|+++|+++|+
T Consensus       233 ~kG~t~~~~a~~~~~~iv~ail~~~~-~~~i~~~sv~~~g~ygi~~~v~~s~P~~ig-~Gv~~iv~~l-~L~~~E~~~l~  309 (326)
T PRK05442        233 ARGASSAASAANAAIDHVRDWVLGTP-EGDWVSMGVPSDGSYGIPEGLIFGFPVTCE-NGEYEIVQGL-EIDDFSREKID  309 (326)
T ss_pred             CcCCccHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEEecCccCCcCCeEEEEEEEEc-CcEEEEeCCC-CCCHHHHHHHH
Confidence            568999999999 5999999999852 135888875 68888  5899999999999 99999976 6 99999999999


Q ss_pred             HHHHHHHHHhhhh
Q 018314          322 KLNPTFHIRKLFQ  334 (358)
Q Consensus       322 ~s~~~L~~~~~~~  334 (358)
                      +|++.|++++.+.
T Consensus       310 ~s~~~l~~~~~~~  322 (326)
T PRK05442        310 ATLAELEEERDAV  322 (326)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999777654

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-60  Score=455.60  Aligned_cols=304  Identities=55%  Similarity=0.827  Sum_probs=267.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+||||+|.||+++++.+.. .+...+++|+|+++ ..++++|+.|......+.++ ..+|++++++|+|+||+++|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999989999999999866 56778999999876 67788999986422345542 235667899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHH-HHhCCCCCCceEeeccccHHHHHHHH
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGVTTLDVVRAKTFY  185 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~-~~sg~~~~~kviG~t~lds~R~~~~l  185 (358)
                      +++++++|.+++..|+++++++++.|++++|+++++++|||+|+||+++++.. +.+| +|++||||+|.|||+|+++++
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg-~p~~rvig~~~Lds~R~~~~i  158 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGV-YDKNKLFGVTTLDVIRSETFV  158 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcC-CCHHHEEeeecHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999875433 6677 999999999889999999999


Q ss_pred             HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (358)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a  265 (358)
                      |+++|+++++|+++||||||++++||+||++ -+.++++++++++.+++++++++|++.|.|+|+|+||+|.++++++++
T Consensus       159 a~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~a  237 (312)
T PRK05086        159 AELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_pred             HHHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999776899999999 444787777999999999999999997667799999999999999999


Q ss_pred             HHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH--HHhhhhH
Q 018314          266 CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH--IRKLFQI  335 (358)
Q Consensus       266 il~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~--~~~~~~~  335 (358)
                      |+++..+++.++|+++++++-..++|||+||++|++|+++++++++|+++|+++|++|++.|+  .++++.+
T Consensus       238 i~~~~~~~~~v~~~~~~~~~g~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~~l~~s~~~i~~~~~~g~~~  309 (312)
T PRK05086        238 LVRALQGEQGVVECAYVEGDGKYARFFAQPVLLGKNGVEERLPIGTLSAFEQNALEGMLDTLKKDIALGEEF  309 (312)
T ss_pred             HHhcCCCCCcEEEEEEEeccCCcceEEEEEEEEcCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998866556688888776653468999999999999999999987899999999999999998  3444443

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=1.7e-60  Score=459.62  Aligned_cols=295  Identities=29%  Similarity=0.360  Sum_probs=261.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~a   97 (358)
                      .||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++++++||.|+..  .......   ++.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~---~~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT---TDPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe---cChHHHhCCC
Confidence            389999988999999999999999888     499999985    6899999999852  1223332   2347899999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccc
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~l  176 (358)
                      |+||++||.|+++|++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++   ++.+|.+|++||||+|.|
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~vig~t~L  154 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA---LKNAPNLPPKNFTALTRL  154 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEEeeHH
Confidence            999999999999999999999999999999999999996 9999999999999999986   788984599999999999


Q ss_pred             cHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-C--------CCHH-HHHHHHHHHhcCcceEEeec
Q 018314          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N--------LADE-DIKALTKRTQDGGTEVVEAK  245 (358)
Q Consensus       177 ds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~--------~~~~-~~~~l~~~v~~~~~~i~~~~  245 (358)
                      |++||++++|++++++|++| +++||||||+ +++|+||++++++ +        ++++ ..++|.+++++++++|++  
T Consensus       155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~--  231 (323)
T cd00704         155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIK--  231 (323)
T ss_pred             HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHh--
Confidence            99999999999999999999 5689999999 8999999999864 2        3333 267899999999999998  


Q ss_pred             cCCCCccch-HHHHHHHHHHHHHccCCCCCcEEEee-eecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (358)
Q Consensus       246 ~gkg~t~~s-~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L  320 (358)
                       +||+++|+ +|.++++++++|+++.+++ .++|++ +++|+|   |+|+|||+||++|++||++++++ +|+++|+++|
T Consensus       232 -~kg~t~~~~~a~a~~~iv~ail~~~~~~-~v~~~s~~~~g~y~gi~~~v~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l  308 (323)
T cd00704         232 -KRGASSAASAAKAIADHVKDWLFGTPPG-EIVSMGVYSPGNPYGIPPGIVFSFPCTCKGGGWHVVEDL-KLNDWLREKL  308 (323)
T ss_pred             -ccCcchhHHHHHHHHHHHHHHHhCCCCC-cEEEEEEEeCCccCCCCCceEEEEEEEEcCCEEEEecCC-CCCHHHHHHH
Confidence             46889896 6999999999999998644 589997 678887   47999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHhhhhH
Q 018314          321 EKLNPTFHIRKLFQI  335 (358)
Q Consensus       321 ~~s~~~L~~~~~~~~  335 (358)
                      ++|++.|+.|+.+++
T Consensus       309 ~~s~~~l~~~~~~~~  323 (323)
T cd00704         309 KATEEELIEEKEIAL  323 (323)
T ss_pred             HHHHHHHHHHHHhhC
Confidence            999999999998863

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=5.9e-60  Score=462.45  Aligned_cols=313  Identities=26%  Similarity=0.279  Sum_probs=268.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEE--ecCC--cHHHHHHhhcCCC--CccEEEEecCCccc
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALY--DIAN--TPGVAADVGHINT--RSEVAGYMGNDQLG   91 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~--D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~   91 (358)
                      ++++++.||+||||+|+||+++++.|+.+++++     +|+|+  |+++  ++|+++||.|+.+  ..++...  ++| +
T Consensus        39 ~~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y  115 (387)
T TIGR01757        39 KSWKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-Y  115 (387)
T ss_pred             hcCCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-H
Confidence            344568999999988999999999999999988     57777  6555  7899999999872  2244433  233 7


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      ++++|||+||++||.|+++|++|.|++..|++|++++++.|.+++ |++++|++|||+|+||+++   ++.+| ++|+|+
T Consensus       116 ~~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~---~k~sg-~~~~rv  191 (387)
T TIGR01757       116 EVFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA---MKNAP-NIPRKN  191 (387)
T ss_pred             HHhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH---HHHcC-CCcccE
Confidence            899999999999999999999999999999999999999999987 9999999999999999987   78898 899999


Q ss_pred             Eee-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-CC----CHHH--HHHHHHHHhcCcceE
Q 018314          171 FGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-NL----ADED--IKALTKRTQDGGTEV  241 (358)
Q Consensus       171 iG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~~----~~~~--~~~l~~~v~~~~~~i  241 (358)
                      ||+ |.||++||+++||+++++++++| +++||||||+ ++||+||++++++ ++    ++.+  ++++.++++++|++|
T Consensus       192 iG~gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eI  270 (387)
T TIGR01757       192 FHALTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGAL  270 (387)
T ss_pred             EEecchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHH
Confidence            999 89999999999999999999999 4999999998 8999999999864 33    2222  689999999999999


Q ss_pred             EeeccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEeee-ecCC-C--CCccEEEEeEEEcCCcEEEEe-cCCCCCHH
Q 018314          242 VEAKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECSF-VQST-V--TELPFFASKVRLGKNGVEEVL-GLGPLSDF  315 (358)
Q Consensus       242 ~~~~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~-~--~~d~~~s~Pv~vg~~Gv~~i~-~l~~L~~~  315 (358)
                      ++   +||++.| ++|.++++++++|+++.+ ++.++|++. ++|+ |  ++|+|||+||++|++|+++++ ++ +|+++
T Consensus       271 i~---~KG~t~~~s~a~ai~~~i~ai~~g~d-~~~il~vsv~~~Ge~YGi~~gv~~S~Pvvig~~Gv~~Iv~~l-~L~~~  345 (387)
T TIGR01757       271 IK---KWGRSSAASTAVSIADAIKSLVVPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYELATDV-SMDDF  345 (387)
T ss_pred             Hh---ccCchhHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCcccCCCCCEEEEEEEEEeCCEEEEECCCC-CCCHH
Confidence            98   5676666 999999999999995443 235888875 5885 8  589999999999999999996 77 99999


Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHhccccccccccc
Q 018314          316 EQEGLEKLNPTFHIRKLFQILQFFRKCCTCCSWH  349 (358)
Q Consensus       316 E~~~L~~s~~~L~~~~~~~~~~~~~~~~~~~~~~  349 (358)
                      |+++|++|++.|+.|+.++ ++.|.++-.-|-.+
T Consensus       346 E~~~l~~Sa~~L~~e~~~~-~~~~~~~~~~~~~~  378 (387)
T TIGR01757       346 LRERIRKSEDELLKEKECV-AHLIGEGNAYCAVP  378 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhcccccccCCC
Confidence            9999999999999888666 55565555555443

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=5.8e-60  Score=468.75  Aligned_cols=297  Identities=26%  Similarity=0.289  Sum_probs=262.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhC-------CCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccc
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLN-------PLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQA   93 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~-------~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~a   93 (358)
                      .+++.||+||||+|+||+++++.|+.+       ++..||+|+|+++  ++|+++||+|+.+  ..++...+  +| +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~--~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGI--DP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEec--CC-HHH
Confidence            356899999998899999999999998       7777999999988  7999999999873  22454332  34 789


Q ss_pred             cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      ++|||+||++||.|+++||+|.|++..|++|++++++.|.+ ++|++++|++|||+|+||+++   ++.+| ++++|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~---~k~sg-~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC---LKNAP-NIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH---HHHcC-CCCcceEE
Confidence            99999999999999999999999999999999999999999 589999999999999999987   78898 89999999


Q ss_pred             e-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEe
Q 018314          173 V-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVE  243 (358)
Q Consensus       173 ~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~  243 (358)
                      + |.||++||+++||+++|+++++| +++||||||+ ++||+||++++++ +    +++++  ++++.++++++|++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 89999999999999999999999 5699999999 8999999999964 3    22323  68999999999999998


Q ss_pred             eccCCCCccc-hHHHHHHHHHHHHHccCCCCCcEEEeee-ecC-CC--CCccEEEEeEEEcCCcEEEEe-cCCCCCHHHH
Q 018314          244 AKAGKGSATL-SMAYAGAIFADACLKGLNGVPDVVECSF-VQS-TV--TELPFFASKVRLGKNGVEEVL-GLGPLSDFEQ  317 (358)
Q Consensus       244 ~~~gkg~t~~-s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~-~l~~L~~~E~  317 (358)
                         +||+++| ++|.++++++++|+++.+ ++.++|++. ++| +|  ++|+|||+||++|++|+++++ ++ +|+++|+
T Consensus       329 ---~kG~t~~~s~a~ai~~~I~ail~~~d-~~~vlpvsv~l~G~~YGi~~dv~~SvPvvig~~Gv~~Iv~el-~L~~~E~  403 (444)
T PLN00112        329 ---KWGRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTDGNPYGIAEGLVFSMPCRSKGDGDYEIVKDV-EIDDYLR  403 (444)
T ss_pred             ---ccCchhHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEeCCcccCCCCCeEEEeEEEEeCCeeEEECCCC-CCCHHHH
Confidence               5676776 999999999999995433 236899974 688 48  589999999999999999999 57 9999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 018314          318 EGLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       318 ~~L~~s~~~L~~~~~~~  334 (358)
                      ++|++|++.|..|+.++
T Consensus       404 ~~l~~Sa~~L~~e~~~~  420 (444)
T PLN00112        404 ERIKKSEAELLAEKRCV  420 (444)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999888766

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=8.2e-60  Score=454.76  Aligned_cols=295  Identities=26%  Similarity=0.344  Sum_probs=263.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~   95 (358)
                      +|+||+||||+|+||+++++.|+.+++++     ||+|+|+++    ++|+++||+|+..+  ..++..  ++| +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    68999999998732  244543  233 78999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      |||+||++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||+++   ++.+|++|++||||+|
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~sg~~p~~~ViG~t  154 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA---MKNAPDIPPDNFTAMT  154 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH---HHHcCCCChHheEEeh
Confidence            99999999999999999999999999999999999999999 5999999999999999987   7888559999999999


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C----CCHH--HHHHHHHHHhcCcceEEeecc
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADE--DIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~----~~~~--~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      .||++||++.+|+++|+++++|++ +|||+||+ +++|+||++++++ +    +.+.  ++++|.+++++++++|++   
T Consensus       155 ~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~---  230 (322)
T cd01338         155 RLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIK---  230 (322)
T ss_pred             HHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHh---
Confidence            999999999999999999999998 56999998 8999999998864 2    3443  367999999999999998   


Q ss_pred             CCCCccchHH-HHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314          247 GKGSATLSMA-YAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (358)
Q Consensus       247 gkg~t~~s~A-~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~  322 (358)
                      +||+++|++| .++++++++|+++.+. +.++|++. ++|+|  |+++|||+||++|++||++++++ +|+++|+++|++
T Consensus       231 ~kG~t~~~~~a~a~~~iv~ail~~~~~-~~i~~~sv~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~l-~L~~~E~~~l~~  308 (322)
T cd01338         231 ARGASSAASAANAAIDHMRDWVLGTPE-GDWFSMAVPSDGSYGIPEGLIFSFPVRSKGGGYEIVEGL-EIDDFAREKIDA  308 (322)
T ss_pred             CcCCccHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEEccCccCCCCCeEEEEEEEEeCCEEEEEeCC-CCCHHHHHHHHH
Confidence            5689999999 5999999999998751 25888875 68888  58999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhhh
Q 018314          323 LNPTFHIRKLF  333 (358)
Q Consensus       323 s~~~L~~~~~~  333 (358)
                      |++.|+.|+.+
T Consensus       309 s~~~l~~~~~~  319 (322)
T cd01338         309 TLAELLEEREA  319 (322)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.1e-58  Score=445.30  Aligned_cols=285  Identities=30%  Similarity=0.434  Sum_probs=256.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||+ |.||+++++.|+..++..+|+|+|+++  ++++++||.|...  ...+....  .+ ++++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~--~~-~~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA--GD-YSDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc--CC-HHHhCCCCEEEEcc
Confidence            38999998 999999999999999888999999987  6889999998753  22333332  33 56799999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~  183 (358)
                      |.|+++|++|.|++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~---~~~~g-~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV---QKLSG-LPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH---HHHhC-cCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999987   67887 999999999 7999999999


Q ss_pred             HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCccc
Q 018314          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSATL  253 (358)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~  253 (358)
                      ++|+++++++++|+++|||+||+ +++|+||++++++ +         +.+++++++.++++++|++|++   +||+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~---~kg~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIIN---GKGATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHH---ccCccHH
Confidence            99999999999999999999998 8999999999864 2         2345688999999999999998   5689999


Q ss_pred             hHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          254 SMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       254 s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      ++|.++++++++|+++.+   .++|++ +++|+| ++|+|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~l~~  302 (306)
T cd05291         229 GIATALARIVKAILNDEN---AILPVSAYLDGEYGEKDVYIGVPAIIGRNGVEEVIEL-DLTEEEQEKFEKSADIIKE  302 (306)
T ss_pred             HHHHHHHHHHHHHHcCCC---EEEEEEEEeccccCCCCEEEEEEEEEeCCCEEEEECC-CCCHHHHHHHHHHHHHHHH
Confidence            999999999999999754   588887 468888 77999999999999999999998 9999999999999999984

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=8.4e-59  Score=444.83  Aligned_cols=285  Identities=29%  Similarity=0.430  Sum_probs=257.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC-ccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |+|||+ |.||+++++.|+..+++.||+|+|+++  +.++++||+|.... ...+.+. ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            689998 999999999999999999999999987  78999999998743 2233332 244 57999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHH
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYA  186 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la  186 (358)
                      +++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++++| +|++||||+ |.||+.|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~---~~~sg-~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA---QKLSG-LPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH---HHHhC-cCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987   78898 999999999 7999999999999


Q ss_pred             HHcCCCCCCCceEEEeecCCcccccccccccCCC-CC------CHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHH
Q 018314          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL------ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (358)
Q Consensus       187 ~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~------~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~  259 (358)
                      +++++++++|+++|+|+||+ ++||+||++++++ ++      +++.++++.+++++++++|++   +||+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~---~kg~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIR---LKGATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHH---ccCcchHHHHHHH
Confidence            99999999999999999998 8999999999864 32      335588999999999999998   5689999999999


Q ss_pred             HHHHHHHHccCCCCCcEEEeee-ecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          260 AIFADACLKGLNGVPDVVECSF-VQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       260 ~~li~ail~~~~~~~~v~~~s~-~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      ++++++|+++.+   .++|+++ ++|+| ++++|||+||++|++|+++++++ +|+++|+++|++|++.|++.
T Consensus       230 ~~~~~ai~~~~~---~v~~~s~~~~g~yg~~~~~~s~Pv~ig~~Gi~~i~~l-~L~~~E~~~l~~s~~~l~~~  298 (300)
T cd00300         230 ADIVKSILLDER---RVLPVSAVQEGQYGIEDVALSVPAVVGREGVVRILEI-PLTEDEEAKLQKSAEALKEV  298 (300)
T ss_pred             HHHHHHHHcCCC---eEEEEEEEecCccCCCCEEEEEEEEEeCCCeEEEecC-CCCHHHHHHHHHHHHHHHHH
Confidence            999999999854   5888875 68888 68999999999999999999998 99999999999999999843

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-58  Score=442.18  Aligned_cols=290  Identities=33%  Similarity=0.541  Sum_probs=259.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +.+||+|||| |+||+++++.++..++ .+|+|||+++  +.++++|+.|...  ....+.. .++|+ ++++|||+||+
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~-~~~d~-~~l~~ADiVVi   79 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINIL-GTNNY-EDIKDSDVVVI   79 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEEE-eCCCH-HHhCCCCEEEE
Confidence            4569999998 9999999999999886 6899999987  6789999999753  1122322 23565 59999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R~  181 (358)
                      ++|.|+++|++|.|++..|.++++++++.|+++||++|+|++|||+|++|+++   ++.++ +|++|++|+| .||++|+
T Consensus        80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~---~~~s~-~p~~rviG~gt~lds~R~  155 (319)
T PTZ00117         80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF---QEKSG-IPSNKICGMAGVLDSSRF  155 (319)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHhhC-CCcccEEEecchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876   67787 9999999995 8999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      ++++|+++|+++++|+++|+||||+ +++|+||++++++ |         +++++++++.+++++++++|++.+ |||++
T Consensus       156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t  233 (319)
T PTZ00117        156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA  233 (319)
T ss_pred             HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence            9999999999999999999999998 8999999998853 1         455668899999999999999975 78999


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +||+|.++++++++|++|.+   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       234 ~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~l~~  309 (319)
T PTZ00117        234 FFAPAAAIVAMIEAYLKDEK---RVLVCSVYLNGQYNCKNLFVGVPVVIGGKGIEKVIEL-ELNAEEKELFDKSIESIQE  309 (319)
T ss_pred             HHHHHHHHHHHHHHHhcCCC---eEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999863   588997 578888 46899999999999999999998 9999999999999999984


Q ss_pred             H
Q 018314          330 R  330 (358)
Q Consensus       330 ~  330 (358)
                      .
T Consensus       310 ~  310 (319)
T PTZ00117        310 L  310 (319)
T ss_pred             H
Confidence            3

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=7.9e-58  Score=441.23  Aligned_cols=286  Identities=34%  Similarity=0.595  Sum_probs=258.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +.+||+|||| |+||+++++.++..++ .+|+|+|+++  +.++++|+.|...    ..+++.   ++|+ ++++|||+|
T Consensus         5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~---~~d~-~~l~~aDiV   78 (321)
T PTZ00082          5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIG---TNNY-EDIAGSDVV   78 (321)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEE---CCCH-HHhCCCCEE
Confidence            4479999997 9999999999999887 4699999988  5788999998742    234443   3564 789999999


Q ss_pred             EEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-
Q 018314          101 IIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-  174 (358)
Q Consensus       101 Ii~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-  174 (358)
                      |+++|.|+++|+     +|.+++..|+++++++++.|++++|++|+|++|||+|++++.+   ++.+| +|++||||+| 
T Consensus        79 I~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~---~~~sg-~p~~rviGlgt  154 (321)
T PTZ00082         79 IVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL---QEHSG-LPKNKVCGMAG  154 (321)
T ss_pred             EECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHhcC-CChhhEEEecC
Confidence            999999999999     9999999999999999999999999999999999999999876   67887 9999999995 


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEee
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~  244 (358)
                      .||+.|+++.+|+++++++++|+++|+||||+ ++||+||++++++ +         +++++++++.++++++|++|++.
T Consensus       155 ~lds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~  233 (321)
T PTZ00082        155 VLDSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL  233 (321)
T ss_pred             cccHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999999999999998 8999999999864 1         45566899999999999999997


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~  322 (358)
                      + |||+|+||+|.++++++++|++|.+   .++|++ +++|+| .+|+|+|+||+||++|+++++++ +|+++|+++|++
T Consensus       234 ~-gkg~t~~~ia~a~~~i~~ail~d~~---~v~~vs~~~~g~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~  308 (321)
T PTZ00082        234 L-GTGSAYFAPAAAAIEMAEAYLKDKK---RVLPCSAYLEGQYGHKDIYMGTPAVIGANGVEKIIEL-DLTPEEQKKFDE  308 (321)
T ss_pred             c-CCCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecccCCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHH
Confidence            5 7899999999999999999999864   588887 578888 57899999999999999999998 999999999999


Q ss_pred             HHHHHH
Q 018314          323 LNPTFH  328 (358)
Q Consensus       323 s~~~L~  328 (358)
                      |++.|+
T Consensus       309 sa~~i~  314 (321)
T PTZ00082        309 SIKEVK  314 (321)
T ss_pred             HHHHHH
Confidence            999998

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=7e-58  Score=439.06  Aligned_cols=285  Identities=33%  Similarity=0.551  Sum_probs=257.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +||+|||+ |.||+++|+.++..++. +|+|+|+++  ..+++.|+.|...    ..+++.   ++|+ +++++||+||+
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi   75 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI   75 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence            69999998 99999999999998876 899999987  5677888877542    234543   3554 56999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++|++|.|++..|.+++++++++|.+++|++++|++|||+|++|+++   ++++| +|++||||+ |.|||+|+
T Consensus        76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~---~~~sg-~~~~rviG~g~~lds~R~  151 (305)
T TIGR01763        76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA---WQKSG-FPKERVIGQAGVLDSARF  151 (305)
T ss_pred             cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHEEEeccchHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   78898 999999999 58999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A  256 (358)
                      ++++|+++++++++|+++||||||+ +++|+||++++++ +    +++++++++.++++++|++|++.+ |||+|+|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a  229 (305)
T TIGR01763       152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA  229 (305)
T ss_pred             HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence            9999999999999999999999998 8999999999865 3    344558999999999999999975 7899999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      .++++++++|++|.+   .++|++ +++|+| .+|+|+|+||++|++||++++++ +|+++|+++|++|++.|++
T Consensus       230 ~~~~~i~~ai~~~~~---~v~~~s~~~~~~yg~~~v~~s~P~~ig~~Gv~~i~~~-~l~~~E~~~l~~s~~~i~~  300 (305)
T TIGR01763       230 ASVVEMVEAILKDRK---RVLPCAAYLDGQYGIDGIYVGVPVILGKNGVEHIYEL-KLDQSELALLNKSAKIVDE  300 (305)
T ss_pred             HHHHHHHHHHhCCCC---eEEEEEEEecccCCCCceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            999999999999864   588887 568888 67999999999999999999998 9999999999999999984

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.1e-57  Score=436.36  Aligned_cols=293  Identities=26%  Similarity=0.292  Sum_probs=253.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCccccccCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~~aD   98 (358)
                      ||+||||+|+||+++++.|+.+++++     +|+|+|+++    ++++++||.|+...  ..+.   .+++.+++++|||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~---~~~~~~~~~~~aD   77 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVV---PTHDPAVAFTDVD   77 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCcee---ccCChHHHhCCCC
Confidence            69999988999999999999988875     799999954    57999999998732  2222   1234478999999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccc
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~l  176 (358)
                      +||++||.|+++|++|.+++..|+++++++++.|.+++ |++++|++|||+|+||+++   ++.+| ++|+++||+ |.|
T Consensus        78 iVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~---~~~sg-~~~~~vig~gt~L  153 (324)
T TIGR01758        78 VAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL---SNYAP-SIPPKNFSALTRL  153 (324)
T ss_pred             EEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCcceEEEeeeh
Confidence            99999999999999999999999999999999999996 9999999999999999987   78898 666679999 899


Q ss_pred             cHHHHHHHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCC-C----CC----CHHH--HHHHHHHHhcCcceEEee
Q 018314          177 DVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPK-A----NL----ADED--IKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       177 ds~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~-~----~~----~~~~--~~~l~~~v~~~~~~i~~~  244 (358)
                      |++||++++|+++++++++|+ ++||||||+ ++||+||+++++ +    ++    ++++  ++++.+++++++++|++.
T Consensus       154 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~  232 (324)
T TIGR01758       154 DHNRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRA  232 (324)
T ss_pred             HHHHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhc
Confidence            999999999999999999996 699999999 899999999997 4    32    2222  578999999999999986


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCC-C--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQST-V--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~-~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L  320 (358)
                      +  +|++.|++|.++++++++|+++.. ++.++|++. .+|+ |  ++|+|||+||++|++|++.+.++ +|+++|+++|
T Consensus       233 k--~~~t~~~ia~~~~~i~~ai~~~~~-~~~i~~vs~~~~g~~yg~~~~v~~s~P~~ig~g~~~~i~el-~L~~~E~~~l  308 (324)
T TIGR01758       233 R--KLSSALSAAKAAVDQMHDWVLGTP-EGTFVSMGVYSDGSPYGVPKGLIFSFPVTCKNGEWKIVEGL-CVDDSSRKKL  308 (324)
T ss_pred             c--CCCHHHHHHHHHHHHHHHHhcCCC-CCeEEEEEeecCCcccCCCCceEEEEEEEEcCCeEEEecCC-CCCHHHHHHH
Confidence            3  358999999999999999995432 235889874 6888 8  48999999999997777666667 9999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 018314          321 EKLNPTFHIRKLFQ  334 (358)
Q Consensus       321 ~~s~~~L~~~~~~~  334 (358)
                      ++|++.|+.++.++
T Consensus       309 ~~s~~~lk~~~~~~  322 (324)
T TIGR01758       309 ALTAKELEEERDEA  322 (324)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999888765

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=8.3e-57  Score=432.52  Aligned_cols=285  Identities=29%  Similarity=0.435  Sum_probs=257.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |||+|||+ |.||+++++.|+..++..+|+|+|+++  ..++++|+.|... ......++  +| ++++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~--~d-~~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA--GD-YADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee--CC-HHHhCCCCEEEEccC
Confidence            69999998 999999999999999888999999987  5789999998852 12233332  45 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~  184 (358)
                      .|++++++|.+++..|+++++++++.|++++|+++++++|||+|++++++   ++.+| +|++||||+ |.||+.|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~---~~~sg-~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA---YKLSG-LPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHHC-cCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987   78888 999999999 89999999999


Q ss_pred             HHHHcCCCCCCCceEEEeecCCcccccccccccCCC------------CCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|+++++++++|+++|+|+||+ +++|+||++++++            .+++++++++.+++++++++|++   +||+|+
T Consensus       153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~---~kg~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIE---RKGATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHH---cCCccH
Confidence            9999999999999999999998 8999999998864            13345688999999999999998   568999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      |++|.++++++++|+++.+   .++|++ +++|+| .+++|+|+||+||++|+++++++ +||++|+++|++|++.|++
T Consensus       229 ~~~a~a~~~i~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~ig~~Gv~~i~~~-~L~~~E~~~l~~s~~~i~~  303 (308)
T cd05292         229 YAIGLALARIVEAILRDEN---SVLTVSSLLDGQYGIKDVALSLPCIVGRSGVERVLPP-PLSEEEEEALRASAEVLKE  303 (308)
T ss_pred             HHHHHHHHHHHHHHHcCCC---cEEEEEEEEcccCCCCCEEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   588887 568888 57899999999999999999998 9999999999999999983

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=4.5e-57  Score=436.65  Aligned_cols=296  Identities=28%  Similarity=0.322  Sum_probs=259.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~   95 (358)
                      +|.||+||||+|+||+++++.|+.+++++     ||+|+|+++    +.++++|+.|+..  ..++..   +++++++++
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~   77 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK   77 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence            46899999998999999999999988764     999999954    5788899999752  224432   356679999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-  173 (358)
                      |||+||++||.|++++++|.+++..|++|++++++.|++++ |++++|++|||+|+||+++   ++.++++|+++ ||+ 
T Consensus        78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~---~k~~~~~~~~~-ig~g  153 (325)
T cd01336          78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL---LKYAPSIPKEN-FTAL  153 (325)
T ss_pred             CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH---HHHcCCCCHHH-EEee
Confidence            99999999999999999999999999999999999999997 7999999999999999987   77865588877 888 


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCC----C-CC----CHH--HHHHHHHHHhcCcceE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPK----A-NL----ADE--DIKALTKRTQDGGTEV  241 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~----~-~~----~~~--~~~~l~~~v~~~~~~i  241 (358)
                      |.||++|+++++|+++++++++|+. +||||||+ ++||+||+++++    + ++    +++  .+++|.+++++++++|
T Consensus       154 t~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~I  232 (325)
T cd01336         154 TRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAV  232 (325)
T ss_pred             ehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHH
Confidence            8999999999999999999999975 59999999 899999999986    4 32    222  2689999999999999


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~  318 (358)
                      ++.  ++|+++|++|.++++++++|+++.+ ++.++|++. ++|+|  ++|+|||+||++|++||++++++ +|+++|++
T Consensus       233 i~~--~~g~t~~~~a~~~~~i~~ail~~~~-~~~v~~vs~~~~g~yg~~~~v~~s~P~~ig~~Gv~~i~~~-~L~~~E~~  308 (325)
T cd01336         233 IKA--RKLSSAMSAAKAICDHVHDWWFGTP-EGEFVSMGVYSDGSYGVPEGLIFSFPVTCKNGKWKIVQGL-SIDDFSRE  308 (325)
T ss_pred             HHc--cccchHHHHHHHHHHHHHHHHcCCC-CCeEEEEEEecCCCcCCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHH
Confidence            986  3579999999999999999999852 135888875 68888  58999999999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q 018314          319 GLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       319 ~L~~s~~~L~~~~~~~  334 (358)
                      +|++|++.|++|+.++
T Consensus       309 ~l~~s~~~l~~e~~~~  324 (325)
T cd01336         309 KIDATAKELVEEKETA  324 (325)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999888765

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=8.9e-55  Score=417.23  Aligned_cols=283  Identities=37%  Similarity=0.615  Sum_probs=254.6

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEEcC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+|||| |.||+++++.++..++. +|+|+|+++  +.++++|+.|...    ..+++.   ++| +++++|||+||+++
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~---t~d-~~~l~dADiVIit~   74 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTG---TND-YEDIAGSDVVVITA   74 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEE---cCC-HHHhCCCCEEEEec
Confidence            689998 99999999999999877 999999987  5677888887641    224443   345 57899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKT  183 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R~~~  183 (358)
                      |.|+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++   ++++| +||+||||+| .||++|+++
T Consensus        75 g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~---~~~s~-~~~~rviGlgt~lds~r~~~  150 (300)
T cd01339          75 GIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA---YKASG-FPRNRVIGMAGVLDSARFRY  150 (300)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCHHHEEEecchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887   67887 9999999995 899999999


Q ss_pred             HHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHH
Q 018314          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYA  258 (358)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a  258 (358)
                      ++|+++++++++|+++++|+||+ +++|+||++++++ +    +++++++++.+++++++++|++.+ |||+++|++|.+
T Consensus       151 ~la~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~  228 (300)
T cd01339         151 FIAEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAA  228 (300)
T ss_pred             HHHHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHH
Confidence            99999999999999999999998 8999999999864 3    345568999999999999999976 779999999999


Q ss_pred             HHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          259 GAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       259 ~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +++++++|+.+.+   .++|++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       229 ~~~i~~ail~~~~---~i~~~s~~~~g~yg~~~~~~s~P~~ig~~G~~~~~~l-~l~~~E~~~l~~s~~~l~~  297 (300)
T cd01339         229 IAEMVEAILKDKK---RVLPCSAYLEGEYGIKDIFVGVPVVLGKNGVEKIIEL-DLTDEEKEAFDKSVESVKE  297 (300)
T ss_pred             HHHHHHHHHcCCC---cEEEEEEEeccccCCCCeEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999864   588887 568888 56999999999999999999998 9999999999999999984

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=1.6e-54  Score=416.57  Aligned_cols=287  Identities=28%  Similarity=0.453  Sum_probs=254.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|+||+|.+|++++..|+..++..+|+|+|+++    +++.++|+.|...  +...+.. .++| ++++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence            699999988999999999999999988999999954    5788899988632  2122222 1345 577999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++|++|.+++..|+++++++++.|.+++|++++|+++||+|++|+++   ++.+| +|++|+||+ |.||++|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~---~~~~g-~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CCHHHEeeccchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999876   78899 999999999 68999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C------CCHHHHHHHHHHHhcCcceEEeeccCCCCccch
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s  254 (358)
                      +++||+++++++++|+++|+||||+ +++|+||++++++ +      +.+.+++++.++++++|++|++.   ||+++||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~---kg~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL---KGGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHh---cCCchhh
Confidence            9999999999999999999999998 8999999999864 2      22445789999999999999984   5789999


Q ss_pred             HHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          255 MAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       255 ~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|.++++++++|+++++   .++|++. ++|+|  .+|+++|+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       231 ~a~~~~~ii~ail~~~~---~v~~vsv~~~g~~~~~~~~~~svP~~ig~~Gv~~i~~l-~l~~~E~~~l~~s~~~i~~  304 (309)
T cd05294         231 PASAISNLVRTIANDER---RILTVSTYLEGEIDGIRDVCIGVPVKLGKNGIEEIVPI-EMDDDEREAFRKSAEIVKK  304 (309)
T ss_pred             HHHHHHHHHHHHHCCCC---eEEEEEEEECCccCCCCCeEEEeEEEEcCCccEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999875   5788764 67776  34899999999999999999998 9999999999999999983

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1.7e-54  Score=416.34  Aligned_cols=286  Identities=36%  Similarity=0.633  Sum_probs=256.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      |+||+|||| |.||+++++.++..++. ||+|+|+++  .+++++|+.|...    ..+++.   ++|+ ++++|||+||
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~---~~d~-~~~~~aDiVi   75 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITG---TNDY-EDIAGSDVVV   75 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEe---CCCH-HHHCCCCEEE
Confidence            579999998 99999999999998877 999999987  5788888887642    223442   3554 7899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R  180 (358)
                      +++|.|+++|++|.+++.+|+++++++++.|++++|++++|++|||+|++|+++   ++++| +|++||||+ |.||++|
T Consensus        76 i~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~---~~~s~-~~~~~viG~gt~lds~r  151 (307)
T PRK06223         76 ITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA---LKESG-FPKNRVIGMAGVLDSAR  151 (307)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCcccEEEeCCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999987   67887 999999999 5899999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchH
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM  255 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~  255 (358)
                      ++++||+++++++++|+++++|+||+ +++|+||++++++ +    ++++.+++|.+.+++.+++|++.+ +|++++|++
T Consensus       152 ~~~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~  229 (307)
T PRK06223        152 FRTFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAP  229 (307)
T ss_pred             HHHHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHH
Confidence            99999999999999999999999998 8999999998853 3    455568899999999999999864 678999999


Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          256 AYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       256 A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      |.++++++++|+.+.+   .++|++ +++|+| .+|++||+||++|++|+++++++ +|+++|+++|++|++.|++
T Consensus       230 A~~~~~ii~ail~~~~---~~~~~~v~~~g~yg~~~~~~s~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  301 (307)
T PRK06223        230 AASIAEMVEAILKDKK---RVLPCSAYLEGEYGVKDVYVGVPVKLGKNGVEKIIEL-ELDDEEKAAFDKSVEAVKK  301 (307)
T ss_pred             HHHHHHHHHHHHcCCC---cEEEEEEEecCcCCCCCeEEEeEEEEeCCeEEEEeCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999998754   578886 568887 57999999999999999999998 9999999999999999983

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=2.2e-54  Score=428.78  Aligned_cols=294  Identities=19%  Similarity=0.175  Sum_probs=256.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCC-----cEEEEEecC--C--cHHHHHHhhcCCCC--ccEEEEecCCcccccc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA--N--TPGVAADVGHINTR--SEVAGYMGNDQLGQAL   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~-----~ei~L~D~~--~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al   94 (358)
                      .+|.+|+|+||+|++|+++.+.++....+     -.|+|+|++  +  ++|+++||.|+.++  ..+..++   +.++++
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~---~~~ea~  197 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTT---DLDVAF  197 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEE---CCHHHh
Confidence            35789999999999999999999996543     269999994  3  78999999998732  2355442   347999


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +|||+||+++|.|+++||+|.|++..|.+|++++++.|.+++|  ++++|++|||+|++|+++   ++.++++|++||||
T Consensus       198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~---~k~apgiP~~rVig  274 (452)
T cd05295         198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL---IKYAPSIPRKNIIA  274 (452)
T ss_pred             CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH---HHHcCCCCHHHEEE
Confidence            9999999999999999999999999999999999999999999  899999999999999987   78894499999999


Q ss_pred             eccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-------------C----CCHHH--HHHHHH
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-------------N----LADED--IKALTK  232 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~l~~  232 (358)
                      ++.+|++|++++||+++|+++++| +++||||||+ ++||+||++++++             +    +.+++  .+++..
T Consensus       275 ~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~~  353 (452)
T cd05295         275 VARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFVA  353 (452)
T ss_pred             ecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHHH
Confidence            977889999999999999999999 6799999999 8999999999853             2    12323  356777


Q ss_pred             HHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecC
Q 018314          233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGL  309 (358)
Q Consensus       233 ~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l  309 (358)
                      .+++++.   +   +||+++||+|.|+++++++|+++.+. ..++|+++ ++|+|  |+|++||+||++|++||+.+.++
T Consensus       354 ~v~~rg~---~---rkgsT~~siA~A~~~iv~ail~~t~~-~~ilsvsv~sdG~YGip~gv~~S~Pviig~~Gve~V~~L  426 (452)
T cd05295         354 TLKSLSS---S---LNHEAAISPAHAIATTLSYWYHGSPP-GEIFSLGVISEGWYGIPEGIVFSMPVKFQNGSWEVVTDL  426 (452)
T ss_pred             HHHHHHH---h---ccCChHHHHHHHHHHHHHHHHhCCCC-CeEEEEEEeeccccCCcCCEEEEEEEEEeCCeEEEEeCC
Confidence            8888877   2   57899999999999999999999752 25888874 68888  68999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314          310 GPLSDFEQEGLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       310 ~~L~~~E~~~L~~s~~~L~~~~~~~  334 (358)
                       +|+++|+++|++|+++|.+|+..+
T Consensus       427 -~L~e~E~~kL~~S~~eL~~E~~~~  450 (452)
T cd05295         427 -ELSEILREVLKRITSDLIQEKLVA  450 (452)
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHhh
Confidence             999999999999999999888765

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=2.3e-54  Score=413.73  Aligned_cols=267  Identities=24%  Similarity=0.286  Sum_probs=237.2

Q ss_pred             EEEEEecCC----cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 018314           56 RLALYDIAN----TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLC  129 (358)
Q Consensus        56 ei~L~D~~~----~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~  129 (358)
                      .++|+|+++    ++|+++||.|+..  ...++.   ++|.+++++|||+||++||.|+++|++|.+++..|++|+++++
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~   91 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA   91 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence            899999976    6899999999873  223432   2454789999999999999999999999999999999999999


Q ss_pred             HHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCC
Q 018314          130 SAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAG  206 (358)
Q Consensus       130 ~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~  206 (358)
                      +.|.++ +|++++|++|||+|+||+++   ++.+| +|++|+||+ |.||++||++++|+++++++++| +++||||||+
T Consensus        92 ~~i~~~~~p~aivivvsNPvDv~t~~~---~~~sg-~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~  167 (309)
T PLN00135         92 SALEKHAAPDCKVLVVANPANTNALIL---KEFAP-SIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS  167 (309)
T ss_pred             HHHHHhcCCCeEEEEeCCcHHHHHHHH---HHHcC-CCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence            999996 89999999999999999987   78898 999999999 89999999999999999999999 7999999999


Q ss_pred             cccccccccccC----CC-CC----CHHH--HHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCc
Q 018314          207 ITILPLFSQATP----KA-NL----ADED--IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPD  275 (358)
Q Consensus       207 ~~~vp~~S~~~v----~~-~~----~~~~--~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~  275 (358)
                       ++||+||++++    ++ ++    .+++  .+++.+++++++++|++.  +||+|+||+|.++++++++|+++.+ ++.
T Consensus       168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~--~kg~t~~~ia~a~~~iv~ai~~~~~-~~~  243 (309)
T PLN00135        168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKA--RKLSSALSAASSACDHIRDWVLGTP-EGT  243 (309)
T ss_pred             -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHc--cCccHHHHHHHHHHHHHHHHHhCCc-CCe
Confidence             89999999999    53 32    3333  688999999999999985  3689999999999999999998532 235


Q ss_pred             EEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314          276 VVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       276 v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~~~~  334 (358)
                      ++|++. ++|+|  ++|+|||+||++|++|++.++++ +|+++|+++|++|++.|++++.++
T Consensus       244 v~~vsv~~~g~YGi~~~v~~s~P~vlg~~gve~v~~l-~L~~~E~~~l~~S~~~lk~~~~~~  304 (309)
T PLN00135        244 WVSMGVYSDGSYGVPPGLIYSFPVTCEKGEWSIVQGL-SIDEFSRKKMDATAKELKEEKELA  304 (309)
T ss_pred             EEEEEEEecCccCCcCCeEEEEEEEEECCEEEEecCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            888874 68888  48999999999999999999898 999999999999999999888776

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=3e-53  Score=406.94  Aligned_cols=267  Identities=21%  Similarity=0.260  Sum_probs=232.8

Q ss_pred             EEEEEecCC----cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 018314           56 RLALYDIAN----TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCS  130 (358)
Q Consensus        56 ei~L~D~~~----~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~  130 (358)
                      .++|+|+++    ++|+++||.|+.+ ..+....  ++|++++++|||+||++||.|+++|++|.|++..|++|++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            899999976    6899999999972 2222222  35666899999999999999999999999999999999999999


Q ss_pred             HHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHHHHHHcCCCCCCCceE-EEeecCCc
Q 018314          131 AIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGI  207 (358)
Q Consensus       131 ~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~  207 (358)
                      .|.+++| ++++|++|||+|+||++++  ++.+| +|++ +||+ |.||++||++++|++++++|++|+.+ ||||||+ 
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t~v~~--~~~sg-~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeHG~-  169 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNCLVAM--LHAPK-LSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNHAE-  169 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHHHHHH--HHcCC-CCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECCCC-
Confidence            9999995 5889999999999999862  36677 9998 9999 89999999999999999999999655 9999998 


Q ss_pred             ccccccccccC--CC-C------CCHH-HHHHHHHHHhcCcceEEeeccCCCCccchHH-HHHHHHHHHHHccCCCCCcE
Q 018314          208 TILPLFSQATP--KA-N------LADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMA-YAGAIFADACLKGLNGVPDV  276 (358)
Q Consensus       208 ~~vp~~S~~~v--~~-~------~~~~-~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A-~a~~~li~ail~~~~~~~~v  276 (358)
                      ++||+||++++  ++ +      ++++ .++++.+++++++++|++   +||+|+|+++ .++++++++|+++.+. +.+
T Consensus       170 s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~---~kg~t~~~~~a~ai~~iv~ail~~~~~-~~i  245 (313)
T TIGR01756       170 SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILE---MRGFTSAASPVKASLQHMKAWLFGTRP-GEV  245 (313)
T ss_pred             ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHh---CcCCcchHHHHHHHHHHHHHHhcCCCC-CeE
Confidence            89999999999  54 2      2332 368999999999999998   5789999977 6999999999996543 368


Q ss_pred             EEeee-ec-C-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHHhhhh
Q 018314          277 VECSF-VQ-S-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       277 ~~~s~-~~-~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~~s~~~L~~~~~~~  334 (358)
                      +|++. ++ + +|  ++|+|+|+||++|++|++++++ + +|+++|+++|++|++.|++|+.++
T Consensus       246 ~pvsv~l~~~g~YGi~~~v~~s~P~vig~~Gv~~ive~l-~L~~~E~~~l~~Sa~~l~~e~~~~  308 (313)
T TIGR01756       246 LSMGIPVPEGNPYGIKPGVIFSFPCTVDEDGKVHVVENF-ELNPWLKTKLAQTEKDLFEERETA  308 (313)
T ss_pred             EEEEEEecCCCccCCCCCEEEEEEEEEeCCceEEEcCCC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99986 55 3 78  4799999999999999999999 7 999999999999999999998776

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=4.2e-50  Score=378.03  Aligned_cols=252  Identities=34%  Similarity=0.503  Sum_probs=227.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCC--cHHHHHHhhcCCCCc-cEEEEecCCccccccCCCCEEEEcCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIAN--TPGVAADVGHINTRS-EVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~--~~~~~~dl~~~~~~~-~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||||+|.+|+++++.|++.+  ...||+|||+++  +++.++|++|..... ..+.. .++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence            6899988999999999999998  778999999987  688999999886432 23332 25677899999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFY  185 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~l  185 (358)
                      .++++|++|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++++| +|++|+||+|.+|+.|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~---~~~sg-~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV---WRYSG-LPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---HHHhC-CCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887   78888 999999999559999999999


Q ss_pred             HHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHH
Q 018314          186 AGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADA  265 (358)
Q Consensus       186 a~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~a  265 (358)
                      |+++++++++|+++|||+||+ +++|+||+++                                     +|.++++++++
T Consensus       156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~-------------------------------------~a~~~~~ii~a  197 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR-------------------------------------IATSIADLIRS  197 (263)
T ss_pred             HHHhCCCccceEEEEEEcCCC-ceEeccccch-------------------------------------HHHHHHHHHHH
Confidence            999999999999999999998 7999999763                                     77899999999


Q ss_pred             HHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          266 CLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       266 il~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      |+++.+   .++|++. ++|+|  ++|++||+||++|++|+++++++ +|+++|+++|+++++.++.
T Consensus       198 i~~~~~---~~~~v~v~~~g~ygi~~~~~~s~P~~i~~~Gi~~~~~~-~l~~~e~~~l~~s~~~~~~  260 (263)
T cd00650         198 LLNDEG---EILPVGVRNNGQIGIPDDVVVSVPCIVGKNGVEEPIEV-GLTDFELEKLQKSADTLKK  260 (263)
T ss_pred             HHcCCC---EEEEEEEEeCCccCCcCCEEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            999853   5778864 68887  58999999999999999999898 9999999999999999884

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=1.2e-42  Score=311.88  Aligned_cols=300  Identities=28%  Similarity=0.347  Sum_probs=264.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      .+.+|.|.||+|++|+++.+.++....     ...++|.|+..    .+|..++|+|++++ .++....++|..++++|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence            577999999999999999999987421     23899999987    58999999999865 333333457778999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccc
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~l  176 (358)
                      |+.|+.++.||++||+|.|++..|..|+++-+..+++|+ |+.+++++.||++..+-++   .++++++|.+++-.+|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~---~k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALIL---KKFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHH---hhhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999998 8999999999999988877   678888999999999999


Q ss_pred             cHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCC-----C----CCHHHH--HHHHHHHhcCcceEEee
Q 018314          177 DVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKA-----N----LADEDI--KALTKRTQDGGTEVVEA  244 (358)
Q Consensus       177 ds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~-----~----~~~~~~--~~l~~~v~~~~~~i~~~  244 (358)
                      |.+|...++|.++|++.++| ++.+||+|+. +++|+.-++++..     +    ++|..|  .++.+.|+++|..+++.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            99999999999999999999 6899999997 9999999999842     1    334443  58999999999999986


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                        +|-++.+|.|.++++.++.|+.+.+.. .+++++ +.+|.|  |++..||+||++ ++|-|++++..+++++-++++.
T Consensus       238 --rk~SSA~SaA~aacDhi~dw~~gTpeG-~fvSmgV~sDGsYgip~gli~SfPv~~-k~g~wkiVqgl~iddf~r~km~  313 (332)
T KOG1496|consen  238 --RKLSSAMSAAKAACDHIRDWWFGTPEG-TFVSMGVYSDGSYGIPDGLIFSFPVTI-KNGDWKIVQGLPIDDFSREKMD  313 (332)
T ss_pred             --hhhhhhhhHHHhHhhhhhheecCCCCc-cEEEEeeecCCCCCCCCCeEEEcceEe-cCCceEEEcCcchhHHHHHhhh
Confidence              467899999999999999999998754 466776 568888  899999999999 7899999987799999999999


Q ss_pred             HHHHHHHHHhhhhH
Q 018314          322 KLNPTFHIRKLFQI  335 (358)
Q Consensus       322 ~s~~~L~~~~~~~~  335 (358)
                      .++++|++||..++
T Consensus       314 ~t~~EL~eEkd~a~  327 (332)
T KOG1496|consen  314 LTAKELKEEKDLAY  327 (332)
T ss_pred             hhHHHHHHhHHHHH
Confidence            99999999998775

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=6.1e-33  Score=237.80  Aligned_cols=137  Identities=44%  Similarity=0.669  Sum_probs=124.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCc--cEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~--~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+||||+|.||+++++.|+++++.+||+|+|+++  ++|+++||+|.....  ......   +.+++++|||+||+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~~~~aDivvita   77 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEALKDADIVVITA   77 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGGGTTESEEEETT
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccccccccEEEEec
Confidence            699999988999999999999999999999999996  799999999986433  333332   3378999999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|++|+++   ++++| +||+|+||
T Consensus        78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~---~~~s~-~~~~kviG  141 (141)
T PF00056_consen   78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA---QKYSG-FPPNKVIG  141 (141)
T ss_dssp             STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH---HHHHT-SSGGGEEE
T ss_pred             cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH---HHhhC-cCcccCcC
Confidence            999999999999999999999999999999999999999999999999987   78888 99999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.97  E-value=1.4e-30  Score=259.68  Aligned_cols=280  Identities=18%  Similarity=0.184  Sum_probs=194.4

Q ss_pred             ceEEEEcCCCChHHH--HHHHHHhCC---CCcEEEEEecCC-cH----HHHHHhhcC-CCCccEEEEecCCccccccCCC
Q 018314           29 RKVAVLGAAGGIGQP--LALLMKLNP---LVSRLALYDIAN-TP----GVAADVGHI-NTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~--~a~~l~~~~---~~~ei~L~D~~~-~~----~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +||+|||| |+. ++  +...|+..+   ..+||+|||+++ ..    ..+..+.+. ..+.+++.   |+|+++|++||
T Consensus         1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~---ttD~~~Al~gA   75 (425)
T cd05197           1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEK---TMDLEDAIIDA   75 (425)
T ss_pred             CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhCCC
Confidence            69999998 754 22  233455444   358999999987 22    223333322 22234443   57899999999


Q ss_pred             CEEEEcC---C---------CCCCCC---CC-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314           98 DVVIIPA---G---------VPRKPG---MT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (358)
Q Consensus        98 DiVIi~a---g---------~~~~~g---~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~  157 (358)
                      ||||.+.   |         +|.++|   ++     ......+|++++++|++.|+++|||||+|++|||+|++|+++  
T Consensus        76 DfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~--  153 (425)
T cd05197          76 DFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV--  153 (425)
T ss_pred             CEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH--
Confidence            9999974   3         244554   22     566788999999999999999999999999999999999987  


Q ss_pred             HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-ecCCcccccccccccCCC----------------
Q 018314          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAGITILPLFSQATPKA----------------  220 (358)
Q Consensus       158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~hg~~~~vp~~S~~~v~~----------------  220 (358)
                       ++.   +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| +|+.     .||..++++                
T Consensus       154 -~~~---~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg~-----~~s~~~~~G~~l~p~l~~~~~~~~~  223 (425)
T cd05197         154 -RRY---VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHGI-----WLNRVRYNGGDVTPKLDEWVEEKSK  223 (425)
T ss_pred             -HHh---CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCeE-----eeEeEEECCeecHHHHHHHHhccCc
Confidence             554   467899999876 8999999999999999999999999 9973     233322110                


Q ss_pred             ----------------------------C------CC----H-------------HH---H-HHHHHHHhcC---cce-E
Q 018314          221 ----------------------------N------LA----D-------------ED---I-KALTKRTQDG---GTE-V  241 (358)
Q Consensus       221 ----------------------------~------~~----~-------------~~---~-~~l~~~v~~~---~~~-i  241 (358)
                                                  +      +.    +             ++   + +++.+..++.   ... -
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~  303 (425)
T cd05197         224 DWKTENPFVDQLSPAAIDFYRFYGVLPNPYLRYYLSWDKXRKLEADKEITWKTRADEVGKVEKELFEVYKFIKENPSVVE  303 (425)
T ss_pred             cccccccccccccchHHHHHHhCCCcccCCccccCccchhhhhhHHhhcccCccHHHHHHHHHHHHHHHhhhhhcCChhh
Confidence                                        0      00    0             01   0 1122222210   100 0


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ  317 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~  317 (358)
                      ..   .++.+.++  ..++++++||.+|.+   .++.+++ ++|.+   |+|.++++||+|+++|++++.- ++|++...
T Consensus       304 ~~---~r~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~d~vVEvp~~v~~~Gi~P~~v-g~lp~~~~  374 (425)
T cd05197         304 LI---KRGGRKYS--EAAIPLIRALLNDNG---ARFVVNTRNNGAIANIDDDVVVEVPCLVDKNGPHPIKV-GPLDRFVK  374 (425)
T ss_pred             hh---hcCCcccH--HHHHHHHHHHHcCCC---eEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceeccc-CCCCHHHH
Confidence            11   11334444  788999999999875   3444443 45654   8899999999999999999854 48999888


Q ss_pred             HHHH--HHHHHHHHHhhhh
Q 018314          318 EGLE--KLNPTFHIRKLFQ  334 (358)
Q Consensus       318 ~~L~--~s~~~L~~~~~~~  334 (358)
                      .+++  ++++.|.+|+...
T Consensus       375 ~Li~~~~~~e~l~veAa~~  393 (425)
T cd05197         375 GLLRQRKMRERLALEAFLT  393 (425)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            8777  7888887776654

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK15076 alpha-galactosidase; Provisional

Probab=99.97  E-value=2.6e-30  Score=258.51  Aligned_cols=286  Identities=15%  Similarity=0.131  Sum_probs=197.7

Q ss_pred             CceEEEEcCCCChHHHHHH--HHH-hCCCC-cEEEEEecCC--cH-HHHHHhhcC----CCCccEEEEecCCccccccCC
Q 018314           28 DRKVAVLGAAGGIGQPLAL--LMK-LNPLV-SRLALYDIAN--TP-GVAADVGHI----NTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~--~l~-~~~~~-~ei~L~D~~~--~~-~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~   96 (358)
                      ++||+|||| |++|++.++  .++ ..++. .||+|||+++  .+ +.+. +.+.    ....+++.   ++|++++++|
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~~---ttD~~eal~d   75 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKITA---TTDRREALQG   75 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEEE---ECCHHHHhCC
Confidence            469999998 999999877  665 34444 4999999987  22 3333 3332    12234543   4688899999


Q ss_pred             CCEEEEcCCCC-CCCC--------------CCHHHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchH
Q 018314           97 SDVVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP  153 (358)
Q Consensus        97 aDiVIi~ag~~-~~~g--------------~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~  153 (358)
                      |||||++++.+ ++++              ++|.+.        +.+|++++++++++|+++|||||+|++|||+|++|+
T Consensus        76 ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~  155 (431)
T PRK15076         76 ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTW  155 (431)
T ss_pred             CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHH
Confidence            99999999876 4434              556677        899999999999999999999999999999999998


Q ss_pred             HHHHHHHHhCCCCCCceEeec--cccHHHHHHHHHHHcCCCCCCCceEEEeecCC----------ccccccccc---c--
Q 018314          154 IAAEVFKKAGTYNEKKLFGVT--TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQ---A--  216 (358)
Q Consensus       154 ~~~~~~~~sg~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~S~---~--  216 (358)
                      .+   +   + +|+.||||+|  .+|+   .+.+|+.+|+++++|++++.|-++.          ++.+|..-.   .  
T Consensus       156 ~~---~---~-~~~~rviG~c~~~~~~---~~~ia~~l~v~~~~v~~~~~GlNH~~W~~~~~~~G~D~~p~l~~~~~~~~  225 (431)
T PRK15076        156 AM---N---R-YPGIKTVGLCHSVQGT---AEQLARDLGVPPEELRYRCAGINHMAWYLELERKGEDLYPELRAAAAEGQ  225 (431)
T ss_pred             HH---h---c-CCCCCEEEECCCHHHH---HHHHHHHhCCCHHHeEEEEEeecchhhheeeeECCcchHHHHHHHHhccC
Confidence            75   3   4 7889999997  3665   4889999999999999999993332          133432110   0  


Q ss_pred             ----c-CC-----------C----------C-C----CHHHHHHHHH----HHh------cCcceEE-eeccCCCCcc--
Q 018314          217 ----T-PK-----------A----------N-L----ADEDIKALTK----RTQ------DGGTEVV-EAKAGKGSAT--  252 (358)
Q Consensus       217 ----~-v~-----------~----------~-~----~~~~~~~l~~----~v~------~~~~~i~-~~~~gkg~t~--  252 (358)
                          . +.           .          + +    .++.++++..    ..+      ....+.. +.+.  +.++  
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~y~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  303 (431)
T PRK15076        226 TRCQDKVRYEMLKRFGYFVTESSEHFAEYVPWFIKPGRPDLIERFNIPLDEYPRRCEEQIANWEKEREELAN--AERIEI  303 (431)
T ss_pred             chhcccccHHHHHHhCCCcccchhhhhhhhcccCcCCCHHHHHHhhcccchhhhhHHHHhhhHHHHHHHhhC--CCcccc
Confidence                0 00           0          0 1    2222222211    000      0000000 1111  1111  


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPT  326 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~  326 (358)
                      -..+..++++++||.+|.+   .++.+++ ++|.+   |+|.++++||.|+++|++++.-. +|++..+++++  ++++.
T Consensus       304 ~~~~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~~g-~lP~~~~~l~~~~~~~e~  379 (431)
T PRK15076        304 KRSREYASTIIEAIETGEP---SVIYGNVRNNGLIDNLPQGCCVEVPCLVDRNGIQPTKVG-DLPPQLAALNRTNINVQE  379 (431)
T ss_pred             ccchHHHHHHHHHHhcCCc---eEEEEECCCCCcCCCCCCCCEEEEeEEEcCCcceeeecC-CCCHHHHHHHHHHHHHHH
Confidence            1134789999999998865   3444444 45654   88999999999999999998554 89999999988  88888


Q ss_pred             HHHHhhhh
Q 018314          327 FHIRKLFQ  334 (358)
Q Consensus       327 L~~~~~~~  334 (358)
                      |.+|+...
T Consensus       380 l~veAa~~  387 (431)
T PRK15076        380 LTVEAALT  387 (431)
T ss_pred             HHHHHHHh
Confidence            88877665

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.97  E-value=3.8e-31  Score=234.47  Aligned_cols=151  Identities=34%  Similarity=0.498  Sum_probs=135.4

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-----------CCCHHHHHHHHHHHhcCcceEE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~  242 (358)
                      |.||++|+++++|+++|++|++++++|||+||+ ++||+||++++++           .+++++++++.+++++++++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            679999999999999999999999999999999 8999999999862           3667788999999999999999


Q ss_pred             eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCc-cEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TEL-PFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (358)
Q Consensus       243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d-~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~  318 (358)
                      +.|.  |+++||+|.|+++++++|+++.+   .++|++ +.+|+|  +++ +|||+||++|++|++++++.++|+++|++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~ail~~~~---~i~~~sv~~~g~yg~~~~~v~~s~P~~ig~~Gv~~i~~~~~L~~~E~~  154 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEAILKDER---RILPVSVYLDGEYGIPDGCVYFSVPVVIGKNGVEKIVEDLPLSEEEQE  154 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHHHHTTHT---EEEEEEEEEESGGGEESSSEEEEEEEEEETTEEEEEECSBSSTHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHHHhhccc---ccccceeccccccCcccccceecceEEEcCCeeEEEeCCCCCCHHHHH
Confidence            9652  89999999999999999999974   588886 468888  344 99999999999999999993399999999


Q ss_pred             HHHHHHHHHHHH
Q 018314          319 GLEKLNPTFHIR  330 (358)
Q Consensus       319 ~L~~s~~~L~~~  330 (358)
                      +|++|++.|+.+
T Consensus       155 ~l~~sa~~l~~~  166 (174)
T PF02866_consen  155 KLKESAKELKKE  166 (174)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999943

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.97  E-value=1.2e-29  Score=252.52  Aligned_cols=288  Identities=17%  Similarity=0.197  Sum_probs=194.8

Q ss_pred             ceEEEEcCCCChHH-HHHHHHHhC-C--CCcEEEEEecC-C-cH----HHHHHhhcCC-CCccEEEEecCCccccccCCC
Q 018314           29 RKVAVLGAAGGIGQ-PLALLMKLN-P--LVSRLALYDIA-N-TP----GVAADVGHIN-TRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~-~~a~~l~~~-~--~~~ei~L~D~~-~-~~----~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +||+|||| |++.. .+...|+.. +  ..+||+|||++ + ..    ..+.++.+.. .+.++..   |+|+++|++||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~---t~d~~~al~ga   76 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHL---TTDRREALEGA   76 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEE---eCCHHHHhCCC
Confidence            69999998 76522 223455553 2  35899999999 5 11    1122232222 2234443   57899999999


Q ss_pred             CEEEEcCCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314           98 DVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~  157 (358)
                      ||||+++++...+++++                    ...+.+|+++++++++.|+++|||||+|++|||+|++|+++  
T Consensus        77 dfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--  154 (419)
T cd05296          77 DFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--  154 (419)
T ss_pred             CEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH--
Confidence            99999987655444433                    33478999999999999999999999999999999999876  


Q ss_pred             HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-ecCC---------cccccc---------------
Q 018314          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-GHAG---------ITILPL---------------  212 (358)
Q Consensus       158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~hg~---------~~~vp~---------------  212 (358)
                       ++.+    +.|+||+|.. +.|+++.+|+.+|+++++|+++++| +|..         ++.+|.               
T Consensus       155 -~k~~----~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~~~~~~~~  228 (419)
T cd05296         155 -LRHT----GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLGWLRRVLLDGEDVLPELLEDLAALLSFEEGL  228 (419)
T ss_pred             -HHhc----cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccceeeeeeeECCcccHHHHHHHhhhcccccccc
Confidence             4543    6899999977 4899999999999999999999999 7754         234541               


Q ss_pred             -cccccC---C---CC------CCH--------------HHHH----HHHHHHhcCcc-eEEeeccCCCCccchHHHHHH
Q 018314          213 -FSQATP---K---AN------LAD--------------EDIK----ALTKRTQDGGT-EVVEAKAGKGSATLSMAYAGA  260 (358)
Q Consensus       213 -~S~~~v---~---~~------~~~--------------~~~~----~l~~~v~~~~~-~i~~~~~gkg~t~~s~A~a~~  260 (358)
                       |+....   +   .+      +.+              +.++    ++.+..++... +..+....++.+.|+  ..++
T Consensus       229 ~~~~~~~~~~g~~p~~Yl~yy~~~~~~~~~~~~~~~~r~e~~~~~~~~l~~~~~~~~~~~~~~~~~~r~g~~y~--e~a~  306 (419)
T cd05296         229 LFGPELLRALGALPNEYLRYYYQTDEALEEILEAAGTRGEVVKEVEKELFELYKDPNLDEKPKELEKRGGAGYS--EAAL  306 (419)
T ss_pred             chHHHHHHhcCCcccchHHHHCCcHHHHHHhhhhccchHHHHHHHHHHHHHHHhccccccChHhhHhhcCcchH--HHHH
Confidence             111000   0   00      011              1112    22222222100 000000122334455  7889


Q ss_pred             HHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHHHHHHhhhh
Q 018314          261 IFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPTFHIRKLFQ  334 (358)
Q Consensus       261 ~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~L~~~~~~~  334 (358)
                      ++++||.++.+   .++.+++ ++|.+   |+|.++++||.|+++|++++. .++|++...++++  ++++.|.+|+...
T Consensus       307 ~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEvp~~v~~~G~~P~~-vg~lP~~~~~l~~~~~~~e~l~veAa~~  382 (419)
T cd05296         307 ALISAIYNDKG---DIHVVNVRNNGAIPGLPDDAVVEVPCVVDADGAHPLP-VGPLPPAILGLIQQVKAYERLTIEAAVE  382 (419)
T ss_pred             HHHHHHhcCCC---cEEEEECCCCCCCCCCCCCCEEEEeEEEcCCCceecc-CCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998865   2443443 45654   889999999999999999984 4489999998887  7777777666554

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.96  E-value=3e-28  Score=243.45  Aligned_cols=285  Identities=16%  Similarity=0.179  Sum_probs=193.5

Q ss_pred             ceEEEEcCCCChHHH--HHHHHHhCC---CCcEEEEEecCC-c----HHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314           29 RKVAVLGAAGGIGQP--LALLMKLNP---LVSRLALYDIAN-T----PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~--~a~~l~~~~---~~~ei~L~D~~~-~----~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      |||+|||| |++ .+  +...|++..   ..+||+|+|+++ .    ...+.++.+.. ...+++.. |+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCC
Confidence            79999998 754 22  234555552   258999999998 2    22233333222 12344332 578999999999


Q ss_pred             EEEEcC---C---------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           99 VVIIPA---G---------VPRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        99 iVIi~a---g---------~~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                      |||.+.   |         +|.|+|.   +     ....+.||++++.+|++.|+++|||||+|++|||+|++|+++   
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---  153 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---  153 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH---
Confidence            999974   2         2445542   2     456789999999999999999999999999999999999876   


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC-----------cccccccc----c--------
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG-----------ITILPLFS----Q--------  215 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~-----------~~~vp~~S----~--------  215 (358)
                      ++.   +|+.||||+|+.. .-++..+|+.+|+++++++..+.|-++.           ++.+|..-    .        
T Consensus       154 ~~~---~~~~kviGlC~~~-~~~~~~la~~lg~~~~~v~~~~~GlNH~~w~~~~~~~~G~D~~p~l~e~~~~~~~~~~~~  229 (437)
T cd05298         154 RRL---FPNARILNICDMP-IAIMDSMAAILGLDRKDLEPDYFGLNHFGWFTKIYDKQGEDLLPKLREHVKENGYLPPDS  229 (437)
T ss_pred             HHH---CCCCCEEEECCcH-HHHHHHHHHHhCCCHHHceEEEEeecchhhhhheEECCCCchHHHHHHHHhccCCCcccc
Confidence            444   6789999999764 4578999999999999999998882221           13443211    0        


Q ss_pred             --c---c-------------------CCCC-----C-CH--------------HHHHHHHHHH----hcC----cceEEe
Q 018314          216 --A---T-------------------PKAN-----L-AD--------------EDIKALTKRT----QDG----GTEVVE  243 (358)
Q Consensus       216 --~---~-------------------v~~~-----~-~~--------------~~~~~l~~~v----~~~----~~~i~~  243 (358)
                        .   .                   +..+     + .+              +.+++..++.    ++.    ..+..+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~y~~yy~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~  309 (437)
T cd05298         230 DEEHRDPSWNDTFANAKDMMADFPDYLPNTYLQYYLYPDYMVEHSNPNYTRANEVMDGREKRVFEECRKIIETGTAEGST  309 (437)
T ss_pred             cccccccCchHHHHHHhhHHHhCCCcCCCchhhHhCChHHHHHHhccccccHHHHHHHHHHHHHHHHhhhhhcCChhhhh
Confidence              0   0                   0000     0 11              1111122221    110    000001


Q ss_pred             eccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHH
Q 018314          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG  319 (358)
Q Consensus       244 ~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~  319 (358)
                      .+   + ..  .|.+++++++||++|.+   .+++++. ++|.|   ++|+++|+||+||++|++++.- ++|++...++
T Consensus       310 ~~---~-~~--ya~~a~~ii~aI~~d~~---~~~~vnv~n~G~i~nL~~d~~vevP~~v~~~Gi~pi~v-g~lP~~~~~l  379 (437)
T cd05298         310 FH---V-DV--HGEYIVDLAASIAYNTK---ERFLVIVENNGAIPNLPDDAMVEVPAYIGSNGPEPLVV-GKIPTFYKGL  379 (437)
T ss_pred             hh---c-cc--hHHHHHHHHHHHHcCCC---eEEEEEeecCCccCCCCCCcEEEEEEEEeCCCceeccc-CCCCHHHHHH
Confidence            11   1 11  45899999999999865   4777765 56666   6899999999999999999854 4899999998


Q ss_pred             HH--HHHHHHHHHhhhh
Q 018314          320 LE--KLNPTFHIRKLFQ  334 (358)
Q Consensus       320 L~--~s~~~L~~~~~~~  334 (358)
                      ++  ++++.|.+|+...
T Consensus       380 ~~~~~~~e~l~veAa~~  396 (437)
T cd05298         380 MEQQVAYEKLLVEAYLE  396 (437)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            88  8888888776654

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.4e-26  Score=227.41  Aligned_cols=291  Identities=16%  Similarity=0.146  Sum_probs=193.1

Q ss_pred             CCceEEEEcCCCChHHHHH--HHHHhCC--CCcEEEEEecCC-cHH----HHHHhhc-CCCCccEEEEecCCccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLA--LLMKLNP--LVSRLALYDIAN-TPG----VAADVGH-INTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a--~~l~~~~--~~~ei~L~D~~~-~~~----~~~dl~~-~~~~~~v~~~~~~~d~~~al~~   96 (358)
                      ++.||+|||| |+++.+-.  ..|...+  ...||+|||+++ ...    .+..+-+ ...+  ++... ++|+++||+|
T Consensus         2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~--~kv~~-ttd~~eAl~g   77 (442)
T COG1486           2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAP--VKVEA-TTDRREALEG   77 (442)
T ss_pred             CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCC--eEEEE-ecCHHHHhcC
Confidence            4569999998 87765542  3455544  367999999987 222    2223322 2333  44433 5789999999


Q ss_pred             CCEEEEcCC------------CCCCCCC---C-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           97 SDVVIIPAG------------VPRKPGM---T-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        97 aDiVIi~ag------------~~~~~g~---~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      ||||+.+..            +|.|+|-   +     ......|++|++-+|++.|+++||+||+|++|||+.++|+++ 
T Consensus        78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv-  156 (442)
T COG1486          78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV-  156 (442)
T ss_pred             CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH-
Confidence            999999742            3666652   2     345668999999999999999999999999999999999876 


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCC-CCCceEEEeecCC----------cccccc-------------
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVGGHAG----------ITILPL-------------  212 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~hg~----------~~~vp~-------------  212 (358)
                        .++   +|..|++|+|+.. .-....+|+.|++++ ++++..+.|-++.          .+.+|.             
T Consensus       157 --~r~---~~~~K~VGlCh~~-~g~~~~lAe~L~~~~~~~l~~~~aGlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~  230 (442)
T COG1486         157 --RRL---YPKIKIVGLCHGP-IGIAMELAEVLGLEPREDLRYRVAGLNHMVWILRVRDDGEDLYPELLEALEEGGSPSE  230 (442)
T ss_pred             --HHh---CCCCcEEeeCCch-HHHHHHHHHHhCCCchhceeEEEeechhhhhhhHhhhcCccchHHHHHHHhccccCCc
Confidence              454   4534999999763 567899999999975 9999999993322          122221             


Q ss_pred             ----------ccccc----CC---CC-----------------------CCHHHHH-----HHHHHHhcCcceEEeeccC
Q 018314          213 ----------FSQAT----PK---AN-----------------------LADEDIK-----ALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       213 ----------~S~~~----v~---~~-----------------------~~~~~~~-----~l~~~v~~~~~~i~~~~~g  247 (358)
                                |...+    ++   .+                       ...+++.     ++.......-.+..+....
T Consensus       231 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ra~ev~~re~~~~~~~~~~~~~~~p~~~~~  310 (442)
T COG1486         231 PENKNIQSPVWIDMFLKYGYPVLPSSYHRYYYYPYDMKEKKPDEIEKFGTRANEVMKREKELFELYKKPELKEKPEELEK  310 (442)
T ss_pred             cccccccCcchHHHHHHhCcCcccCcchhhheehHhhhhccchhhhhcCCCHHHHHHHHHHHHHHHhhhhhhcCchhhhh
Confidence                      11100    00   00                       0111111     1111111000011110011


Q ss_pred             CCCc--cchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          248 KGSA--TLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       248 kg~t--~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                      ++.+  .++  .+++++++||++|.+   .++.+++ ++|.+   |+|.++++||+||++|++++... +|++.-.++++
T Consensus       311 ~~~~~~~~~--e~a~~ii~Ai~~~~~---~~~~vNv~N~G~I~nlp~D~vVEvpc~Vd~~Gi~P~~~g-~lP~~~~~l~~  384 (442)
T COG1486         311 RIGAGKYSS--EYASNIINAIENNKP---SRIYVNVRNNGAITNLPDDAVVEVPCLVDRNGIHPLAVG-DLPEFVKGLMH  384 (442)
T ss_pred             cCCcccccH--HHHHHHHHHHhcCCc---eEEEEEcCCCccccCCCCCeEEEeeEEecCCCCcccccC-CCCHHHHHHHH
Confidence            2223  444  788999999999976   3444444 56654   89999999999999999997665 99999999888


Q ss_pred             --HHHHHHHHHhhhh
Q 018314          322 --KLNPTFHIRKLFQ  334 (358)
Q Consensus       322 --~s~~~L~~~~~~~  334 (358)
                        ++++.|.+|+.+.
T Consensus       385 ~~i~~e~l~veA~~t  399 (442)
T COG1486         385 TNINVEELTVEAALT  399 (442)
T ss_pred             HHHHHHHHHHHHHHh
Confidence              7788887766543

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.95  E-value=8.1e-26  Score=226.26  Aligned_cols=286  Identities=16%  Similarity=0.114  Sum_probs=197.3

Q ss_pred             ceEEEEcCCCChHHHHHH--HHHhC-CC-CcEEEEEecCC--cHHHHHHhhcC----CCCccEEEEecCCccccccCCCC
Q 018314           29 RKVAVLGAAGGIGQPLAL--LMKLN-PL-VSRLALYDIAN--TPGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~--~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      +||+|||| |++|++.+.  .++.. .. ..+|+|||+++  .+....++.+.    ..+.+++.   ++|++++++|||
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~---ttD~~eal~~AD   76 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEA---TTDRREALDGAD   76 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhcCCC
Confidence            58999998 999999877  45543 33 34999999987  34444444332    12234543   468889999999


Q ss_pred             EEEEcCCCCCCCCCCH----------------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           99 VVIIPAGVPRKPGMTR----------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r----------------------~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      +||++++....++.++                      .....+|++++.++++.++++||++|++++|||++++|+++ 
T Consensus        77 ~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~-  155 (423)
T cd05297          77 FVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL-  155 (423)
T ss_pred             EEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH-
Confidence            9999987544443333                      56678999999999999999999999999999999999886 


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC----------ccccccccc-----------
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILPLFSQ-----------  215 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp~~S~-----------  215 (358)
                        ++.++    .|+||+|.. +.++++.+|+.+++++++|+++++|-++.          ++.+|..-.           
T Consensus       156 --~k~~~----~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~~~~~~~~  228 (423)
T cd05297         156 --NRYTP----IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHMAWLLKFEYNGEDLYPLLDEWIEEGSEEWDQ  228 (423)
T ss_pred             --HHhCC----CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccHhhhhhheECCcchHHHHHHHHhccCccchh
Confidence              56554    799999865 78999999999999999999999993332          234442111           


Q ss_pred             cc-CC-------C-----------C------CCHHHHHH------------------HHHHHhcCcceEEee--ccCCCC
Q 018314          216 AT-PK-------A-----------N------LADEDIKA------------------LTKRTQDGGTEVVEA--KAGKGS  250 (358)
Q Consensus       216 ~~-v~-------~-----------~------~~~~~~~~------------------l~~~v~~~~~~i~~~--~~gkg~  250 (358)
                      .. +.       +           +      ..++....                  +........  ..+.  ....+.
T Consensus       229 ~~~~~~~~~~~~g~~p~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  306 (423)
T cd05297         229 LSPVRFDMYRRYGLFPTESSEHLSEYVPHYRKETKKIWYGEFNEDEYGGRDEEQGWEWYEERLKLI--LAEIDKEELDPV  306 (423)
T ss_pred             cccchHHHHHHcCCcccCcchhhhhhccccccchhhHHhhhhcccccchhHHHHHHHHHHhhhhhc--cchhcchhcccc
Confidence            11 00       0           0      01011111                  111111111  0000  000112


Q ss_pred             ccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHH
Q 018314          251 ATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLN  324 (358)
Q Consensus       251 t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~  324 (358)
                      ..+  +..++++++||.++.+   .++.+++ ++|.+   |+|.++++||.|+++|++++.. ++|++....+++  +++
T Consensus       307 ~~~--~e~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~Lp~d~vVEvp~~v~~~G~~p~~~-g~lp~~~~~l~~~~~~~  380 (423)
T cd05297         307 KRS--GEYASPIIEALVTGKP---RRINGNVPNNGLIPNLPDDVVVEVPALVDRNGIHPEKI-GPLPPQLAALIRPRINV  380 (423)
T ss_pred             ccc--hHHHHHHHHHHhcCCc---eEEEEECCCCCCCCCCCCCcEEEEeeEEcCCCceeccc-CCCCHHHHHHHHHHHHH
Confidence            223  3678999999998764   3444444 45654   8899999999999999999854 489999999888  888


Q ss_pred             HHHHHHhhhh
Q 018314          325 PTFHIRKLFQ  334 (358)
Q Consensus       325 ~~L~~~~~~~  334 (358)
                      +.|.+|+...
T Consensus       381 e~l~veA~~~  390 (423)
T cd05297         381 QELAVEAALT  390 (423)
T ss_pred             HHHHHHHHHh
Confidence            8888776654

linked to 3D####ucture

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.84  E-value=2.1e-20  Score=165.76  Aligned_cols=151  Identities=21%  Similarity=0.209  Sum_probs=108.4

Q ss_pred             eEEEEcCCCChHHHHH--HHHHhCCC--CcEEEEEecCC-c----HHHHHHhhcC-CCCccEEEEecCCccccccCCCCE
Q 018314           30 KVAVLGAAGGIGQPLA--LLMKLNPL--VSRLALYDIAN-T----PGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a--~~l~~~~~--~~ei~L~D~~~-~----~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      ||+|||| |++-.+..  ..+...+.  .+||+|+|+++ .    ...+..+... ..+.+++.   ++|+++|++||||
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~---ttd~~eAl~gADf   76 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEA---TTDRREALEGADF   76 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEE---ESSHHHHHTTESE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEE---eCCHHHHhCCCCE
Confidence            8999998 87766543  35555442  46999999997 1    2223333322 23345554   5789999999999


Q ss_pred             EEEcCC------------CCCCCCCC----------HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314          100 VIIPAG------------VPRKPGMT----------RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (358)
Q Consensus       100 VIi~ag------------~~~~~g~~----------r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~  157 (358)
                      ||.+..            .|.++|..          ......|++|++.+|++.|+++|||||+|++|||+.++|.++  
T Consensus        77 Vi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--  154 (183)
T PF02056_consen   77 VINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--  154 (183)
T ss_dssp             EEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH--
T ss_pred             EEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH--
Confidence            999754            36676532          466789999999999999999999999999999999999876  


Q ss_pred             HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCC
Q 018314          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANV  191 (358)
Q Consensus       158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v  191 (358)
                       .+.   +|..|++|+|+.. .-+...+|+.||+
T Consensus       155 -~r~---~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  155 -SRY---TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             -HHH---STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             -HHh---CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence             454   4568999999763 5678999998874

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.87  E-value=9.8e-09  Score=91.53  Aligned_cols=117  Identities=22%  Similarity=0.353  Sum_probs=78.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-----HHHHHH-hh---c-CC--------CCccEEEEecCCccc
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAAD-VG---H-IN--------TRSEVAGYMGNDQLG   91 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----~~~~~d-l~---~-~~--------~~~~v~~~~~~~d~~   91 (358)
                      ||+|||| |.+|..+|..++..|+  +|+|||.++.     .....+ +.   . ..        ...+++..   +|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT---TDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE---SSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc---cCHH
Confidence            7999998 9999999999999998  9999999861     111111 11   1 11        12366653   5665


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCCCCCCc
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~~~k  169 (358)
                      ++. |||+||.+.              .++.++.+++..++++++ |++  |+.||...+ ++.++    ...  -.|+|
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~--ilasnTSsl~i~~la----~~~--~~p~R  131 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDT--ILASNTSSLSISELA----AAL--SRPER  131 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTS--EEEE--SSS-HHHHH----TTS--STGGG
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCc--eEEecCCCCCHHHHH----hcc--CcCce
Confidence            555 999999986              578999999999999999 577  458998875 44332    222  24678


Q ss_pred             eEeecc
Q 018314          170 LFGVTT  175 (358)
Q Consensus       170 viG~t~  175 (358)
                      ++|+..
T Consensus       132 ~ig~Hf  137 (180)
T PF02737_consen  132 FIGMHF  137 (180)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            888853

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=98.79  E-value=2.6e-08  Score=95.45  Aligned_cols=118  Identities=23%  Similarity=0.345  Sum_probs=86.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHH--H----HHhhcCC---------CCccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGV--A----ADVGHIN---------TRSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~--~----~dl~~~~---------~~~~v~~~~~~~d   89 (358)
                      .+||+|||| |.||+.+|+.++..++  +|+|+|+++   ..+.  .    ..+....         ...+++.   ++|
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~---~~~   76 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITP---TTD   76 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccc---cCc
Confidence            469999998 9999999999999667  999999985   1111  1    1111111         1224443   345


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGTYNE  167 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~~  167 (358)
                      + .++++||+||.++              .+|.++.+++..++++++ |++  |+.||.+.+ ++.++.    ..  -.|
T Consensus        77 ~-~~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~a--IlASNTSsl~it~ia~----~~--~rp  133 (307)
T COG1250          77 L-AALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDA--ILASNTSSLSITELAE----AL--KRP  133 (307)
T ss_pred             h-hHhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCc--EEeeccCCCCHHHHHH----Hh--CCc
Confidence            4 5899999999986              699999999999999999 677  559999985 555542    22  457


Q ss_pred             CceEeec
Q 018314          168 KKLFGVT  174 (358)
Q Consensus       168 ~kviG~t  174 (358)
                      +|++|+.
T Consensus       134 er~iG~H  140 (307)
T COG1250         134 ERFIGLH  140 (307)
T ss_pred             hhEEEEe
Confidence            8899984

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.73  E-value=9e-08  Score=92.77  Aligned_cols=121  Identities=13%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHH-----HH---HhhcC-----CCCccEEEEecCCccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV-----AA---DVGHI-----NTRSEVAGYMGNDQLGQA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~-----~~---dl~~~-----~~~~~v~~~~~~~d~~~a   93 (358)
                      ..||+|||+ |.||+.+|..++..|+  +|+|||+++ ....     ..   .+...     ....+++.   +++++++
T Consensus         7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC   80 (321)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence            468999998 9999999999999998  999999976 1111     00   11111     11234554   3567788


Q ss_pred             cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      +++||+|+.++              .+|.++.+++...+.+++|... |+.||.+.+...-+   ....  -.|+|++|+
T Consensus        81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s~l---a~~~--~~p~R~~g~  140 (321)
T PRK07066         81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPTDF---YARA--THPERCVVG  140 (321)
T ss_pred             hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHHHH---HHhc--CCcccEEEE
Confidence            99999999986              5889999999999999996433 66999987643322   2222  246788887


Q ss_pred             c
Q 018314          174 T  174 (358)
Q Consensus       174 t  174 (358)
                      .
T Consensus       141 H  141 (321)
T PRK07066        141 H  141 (321)
T ss_pred             e
Confidence            4

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.72  E-value=1.8e-07  Score=89.37  Aligned_cols=125  Identities=14%  Similarity=0.213  Sum_probs=87.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HH-H--HH----HhhcCC---------CCccEEEEec
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PG-V--AA----DVGHIN---------TRSEVAGYMG   86 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~-~--~~----dl~~~~---------~~~~v~~~~~   86 (358)
                      +....||+|||+ |.+|..+|..++..++  +|+|||+++.  .. .  ..    .+.+..         ...+++.   
T Consensus         2 ~~~~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---   75 (286)
T PRK07819          2 SDAIQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---   75 (286)
T ss_pred             CCCccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---
Confidence            445569999998 9999999999999998  9999999861  11 1  00    011111         1134554   


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-C-CeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-P-NAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p-~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ++|+ +++++||+||.+.              .++.++.+++...+++++ + ++  |++||...+.....+   ...  
T Consensus        76 ~~~~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~--il~snTS~~~~~~la---~~~--  133 (286)
T PRK07819         76 TTDL-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDA--VLASNTSSIPIMKLA---AAT--  133 (286)
T ss_pred             eCCH-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH---hhc--
Confidence            3565 6799999999996              588999999999999997 4 55  448888875443322   222  


Q ss_pred             CCCCceEeecccc
Q 018314          165 YNEKKLFGVTTLD  177 (358)
Q Consensus       165 ~~~~kviG~t~ld  177 (358)
                      -.++|++|+...+
T Consensus       134 ~~~~r~~g~hf~~  146 (286)
T PRK07819        134 KRPGRVLGLHFFN  146 (286)
T ss_pred             CCCccEEEEecCC
Confidence            3467888886543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.68  E-value=6.6e-07  Score=87.55  Aligned_cols=116  Identities=20%  Similarity=0.255  Sum_probs=84.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH-------------Hh-hcCCCCccEEEEecCCcccccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-------------DV-GHINTRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-------------dl-~~~~~~~~v~~~~~~~d~~~al   94 (358)
                      |||+|+|. |.||...+..|++.|+  +|+++|+++.+-..+             +| .+.....+++.   |+|+++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence            79999996 9999999999999998  999999986211111             11 11112235665   46788899


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHH
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAA  156 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~  156 (358)
                      +++|+++|+.|.|.++..      ..+...+...++.|.++.+...+|+.  |-|++....+-.
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~  132 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA  132 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence            999999999999887643      25577788888888888766444444  788877666543

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.57  E-value=3.6e-07  Score=97.54  Aligned_cols=121  Identities=18%  Similarity=0.224  Sum_probs=88.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HHHh-----hcCC--------CCccEEEEec
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AADV-----GHIN--------TRSEVAGYMG   86 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~dl-----~~~~--------~~~~v~~~~~   86 (358)
                      +.+..||+|||| |.||..+|..++..|+  +|+|+|+++ .  .+.  ..+.     ....        ...+++..  
T Consensus       310 ~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~--  384 (714)
T TIGR02437       310 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT--  384 (714)
T ss_pred             ccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe--
Confidence            345678999998 9999999999999998  999999986 1  111  1111     1110        12356653  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGT  164 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~  164 (358)
                       +|+ ++++|||+||.++              .++.++.+++..++++++| ++  |+.||...+ ++.++    ...  
T Consensus       385 -~~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasnTS~l~i~~ia----~~~--  440 (714)
T TIGR02437       385 -LSY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDA--ILASNTSTISISLLA----KAL--  440 (714)
T ss_pred             -CCH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhc--
Confidence             454 6799999999996              5889999999999999995 65  459999985 55443    222  


Q ss_pred             CCCCceEeec
Q 018314          165 YNEKKLFGVT  174 (358)
Q Consensus       165 ~~~~kviG~t  174 (358)
                      -.|+|++|+.
T Consensus       441 ~~p~r~ig~H  450 (714)
T TIGR02437       441 KRPENFCGMH  450 (714)
T ss_pred             CCcccEEEEe
Confidence            3578999985

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.55  E-value=8e-08  Score=87.04  Aligned_cols=122  Identities=20%  Similarity=0.315  Sum_probs=89.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c-----HHHHHHhhcCC-----------------CCccEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-----PGVAADVGHIN-----------------TRSEVAG   83 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-----~~~~~dl~~~~-----------------~~~~v~~   83 (358)
                      +.+.|+|+|| |.+|+.+|...+..++  .|+|+|.++ +     ++....+.+..                 ...+++.
T Consensus        10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~   86 (298)
T KOG2304|consen   10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT   86 (298)
T ss_pred             cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence            5568999998 9999999999999998  899999987 1     23333332211                 0123343


Q ss_pred             EecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc-chHHHHHHHHHh
Q 018314           84 YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS-TVPIAAEVFKKA  162 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~-~t~~~~~~~~~s  162 (358)
                         ++|...++.|||+||.+.              .+|+++.+++.+.+++.|+..- |..||...+ ++.++.     .
T Consensus        87 ---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~-il~tNTSSl~lt~ia~-----~  143 (298)
T KOG2304|consen   87 ---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSST-ILATNTSSLSLTDIAS-----A  143 (298)
T ss_pred             ---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccce-EEeecccceeHHHHHh-----h
Confidence               356678899999988874              7999999999999999996543 458999885 665542     1


Q ss_pred             CCCCCCceEeecc
Q 018314          163 GTYNEKKLFGVTT  175 (358)
Q Consensus       163 g~~~~~kviG~t~  175 (358)
                       .-+|.++.|+..
T Consensus       144 -~~~~srf~GlHF  155 (298)
T KOG2304|consen  144 -TQRPSRFAGLHF  155 (298)
T ss_pred             -ccChhhhceeec
Confidence             146789999963

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.54  E-value=5.9e-07  Score=95.96  Aligned_cols=120  Identities=22%  Similarity=0.323  Sum_probs=86.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHH-hCCCCcEEEEEecCC-c--HH--HHHHh----h-cCC--------CCccEEEEec
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-T--PG--VAADV----G-HIN--------TRSEVAGYMG   86 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~--~~--~~~dl----~-~~~--------~~~~v~~~~~   86 (358)
                      .+..||+|||| |.+|..+|..++ ..++  +|+|+|+++ .  .+  ...+.    . ...        ...+++..  
T Consensus       307 ~~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--  381 (708)
T PRK11154        307 RPVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT--  381 (708)
T ss_pred             CcccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe--
Confidence            45579999998 999999999998 7788  999999976 1  11  11111    1 110        12356653  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS-TVPIAAEVFKKAGT  164 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~-~t~~~~~~~~~sg~  164 (358)
                       +|+ ++++|||+||.+.              .+|.++.+++..++++++ |++  |+.||...+ ++.++    ...  
T Consensus       382 -~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~--ilasnTS~l~i~~la----~~~--  437 (708)
T PRK11154        382 -TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHT--IFASNTSSLPIGQIA----AAA--  437 (708)
T ss_pred             -CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----Hhc--
Confidence             455 6899999999996              689999999999999999 566  458999985 55443    222  


Q ss_pred             CCCCceEeec
Q 018314          165 YNEKKLFGVT  174 (358)
Q Consensus       165 ~~~~kviG~t  174 (358)
                      -.|+|++|+.
T Consensus       438 ~~p~r~ig~H  447 (708)
T PRK11154        438 ARPEQVIGLH  447 (708)
T ss_pred             CcccceEEEe
Confidence            2467899985

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.53  E-value=6.6e-07  Score=85.42  Aligned_cols=121  Identities=21%  Similarity=0.352  Sum_probs=79.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHH----hh-----cCCC---------CccEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD----VG-----HINT---------RSEVAGYMGND   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~d----l~-----~~~~---------~~~v~~~~~~~   88 (358)
                      .+||+|||+ |.+|..+|..++..++  +|++||+++. ...+.+    +.     ....         ..+++.   ++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence            359999998 9999999999999887  8999999761 111110    10     0000         124554   35


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      |+.+++++||+||++.              ..+.++.+++...+.+++++.. |+++|.......-+   .+...  .+.
T Consensus        77 d~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~~~~~~~~-ii~sntSt~~~~~~---~~~~~--~~~  136 (287)
T PRK08293         77 DLAEAVKDADLVIEAV--------------PEDPEIKGDFYEELAKVAPEKT-IFATNSSTLLPSQF---AEATG--RPE  136 (287)
T ss_pred             CHHHHhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCC-EEEECcccCCHHHH---HhhcC--Ccc
Confidence            6667899999999986              3557788888888988885433 33677776533211   22222  356


Q ss_pred             ceEeec
Q 018314          169 KLFGVT  174 (358)
Q Consensus       169 kviG~t  174 (358)
                      |++|+.
T Consensus       137 r~vg~H  142 (287)
T PRK08293        137 KFLALH  142 (287)
T ss_pred             cEEEEc
Confidence            788874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.51  E-value=1.1e-06  Score=94.26  Aligned_cols=120  Identities=20%  Similarity=0.243  Sum_probs=87.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HHH-h----hcCC--------CCccEEEEecC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AAD-V----GHIN--------TRSEVAGYMGN   87 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~d-l----~~~~--------~~~~v~~~~~~   87 (358)
                      .+..||+|||| |.||..+|..++..|+  +|+|+|+++ .  .+.  ..+ +    ....        ...+++..   
T Consensus       333 ~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~---  406 (737)
T TIGR02441       333 RPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT---  406 (737)
T ss_pred             CcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---
Confidence            35568999998 9999999999999998  999999986 1  111  111 1    1110        12356653   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCCC
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTY  165 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~~  165 (358)
                      +|+ +++++||+||.++              .+|.++.+++..+++++++ ++  |+.||...+ ++.++    ...  -
T Consensus       407 ~~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la----~~~--~  463 (737)
T TIGR02441       407 LDY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHC--IIASNTSALPIKDIA----AVS--S  463 (737)
T ss_pred             CCH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH----hhc--C
Confidence            454 6899999999986              6899999999999999995 55  458999985 55443    232  3


Q ss_pred             CCCceEeec
Q 018314          166 NEKKLFGVT  174 (358)
Q Consensus       166 ~~~kviG~t  174 (358)
                      .|+|++|+.
T Consensus       464 ~p~r~ig~H  472 (737)
T TIGR02441       464 RPEKVIGMH  472 (737)
T ss_pred             CccceEEEe
Confidence            478899984

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.50  E-value=9.8e-07  Score=94.37  Aligned_cols=119  Identities=21%  Similarity=0.235  Sum_probs=86.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--HH----Hhh-cCC--------CCccEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--AA----DVG-HIN--------TRSEVAGYMGND   88 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~~----dl~-~~~--------~~~~v~~~~~~~   88 (358)
                      +..||+|||| |.||..+|..++..|+  +|+|||+++ .  .+.  ..    .+. ...        ...+++..   +
T Consensus       312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~  385 (715)
T PRK11730        312 PVKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT---L  385 (715)
T ss_pred             ccceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe---C
Confidence            4568999998 9999999999999998  999999986 1  111  11    111 110        12356653   4


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGTYN  166 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~~~  166 (358)
                      |+ +++++||+||.+.              .++.++.+++..++++++| ++  |+.||...+ ++.++    ...  -.
T Consensus       386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~--ilasNTSsl~i~~la----~~~--~~  442 (715)
T PRK11730        386 DY-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDT--ILASNTSTISISLLA----KAL--KR  442 (715)
T ss_pred             CH-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCc--EEEEcCCCCCHHHHH----hhc--CC
Confidence            55 6799999999996              5889999999999999995 55  559999986 55544    222  24


Q ss_pred             CCceEeec
Q 018314          167 EKKLFGVT  174 (358)
Q Consensus       167 ~~kviG~t  174 (358)
                      |+|++|+.
T Consensus       443 p~r~~g~H  450 (715)
T PRK11730        443 PENFCGMH  450 (715)
T ss_pred             CccEEEEe
Confidence            67899984

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.46  E-value=1.1e-06  Score=93.69  Aligned_cols=120  Identities=19%  Similarity=0.275  Sum_probs=86.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC-c--HHH--HH-Hhh----cCC--------CCccEEEEec
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-T--PGV--AA-DVG----HIN--------TRSEVAGYMG   86 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-~--~~~--~~-dl~----~~~--------~~~~v~~~~~   86 (358)
                      .+..||+|||| |.||+.+|..++. .++  +|+|+|+++ .  .+.  .. .+.    ...        ...+++..  
T Consensus       302 ~~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~--  376 (699)
T TIGR02440       302 AKIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGT--  376 (699)
T ss_pred             ccccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEe--
Confidence            45569999998 9999999999884 788  999999986 1  111  11 111    100        12356653  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-chHHHHHHHHHhCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-TVPIAAEVFKKAGT  164 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~t~~~~~~~~~sg~  164 (358)
                       +|+ ++++|||+||.++              .++.++.+++..+++++++ ++  |+.||...+ ++.++    ...  
T Consensus       377 -~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~--ilasnTS~l~i~~la----~~~--  432 (699)
T TIGR02440       377 -TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHT--IFASNTSSLPIGQIA----AAA--  432 (699)
T ss_pred             -CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHH----Hhc--
Confidence             555 6899999999986              5889999999999999995 55  458999985 55543    222  


Q ss_pred             CCCCceEeec
Q 018314          165 YNEKKLFGVT  174 (358)
Q Consensus       165 ~~~~kviG~t  174 (358)
                      -.|+|++|+.
T Consensus       433 ~~p~r~~g~H  442 (699)
T TIGR02440       433 SRPENVIGLH  442 (699)
T ss_pred             CCcccEEEEe
Confidence            3477899974

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.40  E-value=5.4e-07  Score=78.43  Aligned_cols=92  Identities=26%  Similarity=0.386  Sum_probs=62.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--------CCccEEEEecCCccccccCCCCEEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------TRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ||+|+|| |..|.++|..|+.++.  +|.||++++.....+.-.+..        .+..+..   ++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence            8999998 9999999999999996  999999876222222112221        1234554   368889999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNM  143 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv  143 (358)
                      ++.                .....+++++.|..+-+ +..+++
T Consensus        75 iav----------------Ps~~~~~~~~~l~~~l~~~~~ii~  101 (157)
T PF01210_consen   75 IAV----------------PSQAHREVLEQLAPYLKKGQIIIS  101 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred             ecc----------------cHHHHHHHHHHHhhccCCCCEEEE
Confidence            974                13456788888888874 444443

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.39  E-value=4.5e-06  Score=79.41  Aligned_cols=119  Identities=21%  Similarity=0.351  Sum_probs=80.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHH------HHHhhcCC---------CCccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV------AADVGHIN---------TRSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~------~~dl~~~~---------~~~~v~~~~~~~d   89 (358)
                      ++||+|||+ |.||..++..++..++  +|+++|+++.   .+.      ..++.+..         ...+++..   +|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~---~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT---TD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe---CC
Confidence            358999998 9999999999999987  8999998762   111      01111111         01245542   45


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      + +++++||+||+++              ..+..+.+++...+.++++ +++ + .||..++....+   ....+  .+.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~i-l-~s~ts~~~~~~l---a~~~~--~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAI-L-ATNTSSLSITEL---AAATK--RPD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcE-E-EECCCCCCHHHH---HHhhC--CCc
Confidence            4 5689999999996              4667788888999999885 553 3 788887644333   22332  346


Q ss_pred             ceEeec
Q 018314          169 KLFGVT  174 (358)
Q Consensus       169 kviG~t  174 (358)
                      |++|+.
T Consensus       135 r~ig~h  140 (282)
T PRK05808        135 KVIGMH  140 (282)
T ss_pred             ceEEee
Confidence            788885

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.36  E-value=1.4e-06  Score=77.97  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=71.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CCccEEEEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~   92 (358)
                      |||+|||. |.||..+|..|+..|+  +++-||+++.  ....++...                ...+++..   +|..+
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~--~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t---~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEE--KVEALNNGELPIYEPGLDELLKENVSAGRLRAT---TDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HH--HHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE---SEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChH--HHHHHhhccccccccchhhhhccccccccchhh---hhhhh
Confidence            79999997 9999999999999998  9999999862  111222211                12466653   56677


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg  163 (358)
                      ++++||++|++.+.|...+.+      -+...+.+.++.|.++..+..++++  |=|.+....++..+++..+
T Consensus        73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~  139 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRS  139 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred             hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhc
Confidence            899999999999888765431      2344455555555555433333434  7777777655544555544

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.35  E-value=4.4e-06  Score=79.87  Aligned_cols=120  Identities=13%  Similarity=0.267  Sum_probs=77.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHH--------hh---cCCC---------CccEEEEecC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD--------VG---HINT---------RSEVAGYMGN   87 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~d--------l~---~~~~---------~~~v~~~~~~   87 (358)
                      .||+|||+ |.+|..++..++..++  +|++||+++. ...+.+        +.   +...         ..++..   +
T Consensus         4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~   77 (291)
T PRK06035          4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S   77 (291)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence            58999998 9999999999999987  8999999862 111110        11   1010         113343   2


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      +|+ +++++||+||++.              ..+.++.+++...++++++ ++++  +||...+...-+   ....  -.
T Consensus        78 ~~~-~~~~~aDlVieav--------------~e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l---a~~~--~~  135 (291)
T PRK06035         78 TSY-ESLSDADFIVEAV--------------PEKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI---ATAL--ER  135 (291)
T ss_pred             CCH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH---Hhhc--CC
Confidence            444 6789999999986              3456777888888888875 5533  677776543222   1222  23


Q ss_pred             CCceEeeccc
Q 018314          167 EKKLFGVTTL  176 (358)
Q Consensus       167 ~~kviG~t~l  176 (358)
                      +.|++|+...
T Consensus       136 ~~r~ig~hf~  145 (291)
T PRK06035        136 KDRFIGMHWF  145 (291)
T ss_pred             cccEEEEecC
Confidence            6788888543

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.31  E-value=1.3e-05  Score=73.61  Aligned_cols=100  Identities=23%  Similarity=0.220  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcC----CCCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHI----NTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||++|.+|++++..|+..+.  +|.++|.++.  .....+..+.    .....+..    .+..++++++|+||+
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~----~~~~ea~~~aDvVil   74 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG----ADNAEAAKRADVVIL   74 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE----eChHHHHhcCCEEEE
Confidence            6899998449999999999998886  8999998752  2222222211    11112222    123578899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      +.-                ...+.++.+.+...-++.++|-++||.+.
T Consensus        75 avp----------------~~~~~~~l~~l~~~l~~~vvI~~~ngi~~  106 (219)
T TIGR01915        75 AVP----------------WDHVLKTLESLRDELSGKLVISPVVPLAS  106 (219)
T ss_pred             ECC----------------HHHHHHHHHHHHHhccCCEEEEeccCcee
Confidence            862                11123333344333334578889999864

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.31  E-value=5.8e-06  Score=85.10  Aligned_cols=124  Identities=18%  Similarity=0.228  Sum_probs=83.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HH--HHHH----hh-cCC--------CCccEEEEec
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PG--VAAD----VG-HIN--------TRSEVAGYMG   86 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~--~~~d----l~-~~~--------~~~~v~~~~~   86 (358)
                      +.+..||+|||+ |.||..+|..++..++  +|++||+++.   .+  ...+    +. +..        ...+++..  
T Consensus         4 ~~~i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~--   78 (507)
T PRK08268          4 LPSIATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV--   78 (507)
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe--
Confidence            345568999998 9999999999999998  9999999861   11  0111    11 110        01245553  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcc-hHHHHHHHHHhCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGT  164 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~-t~~~~~~~~~sg~  164 (358)
                       +|+ +++++||+||.+.              .++.++.+.+...+++.++ ++  |++||...+- +.+.    ...  
T Consensus        79 -~~~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~a--ilasntStl~i~~la----~~~--  134 (507)
T PRK08268         79 -EAL-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDC--ILATNTSSLSITAIA----AAL--  134 (507)
T ss_pred             -CCH-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHHH----hhc--
Confidence             444 5688999999985              4778888888888999984 55  4467877643 3332    222  


Q ss_pred             CCCCceEeecccc
Q 018314          165 YNEKKLFGVTTLD  177 (358)
Q Consensus       165 ~~~~kviG~t~ld  177 (358)
                      -.|+|++|+..++
T Consensus       135 ~~p~r~~G~hff~  147 (507)
T PRK08268        135 KHPERVAGLHFFN  147 (507)
T ss_pred             CCcccEEEEeecC
Confidence            3467888885444

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.31  E-value=5.5e-06  Score=85.14  Aligned_cols=123  Identities=24%  Similarity=0.333  Sum_probs=84.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHH---H---HHhhcCC---------CCccEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGV---A---ADVGHIN---------TRSEVAGYMGND   88 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~---~---~dl~~~~---------~~~~v~~~~~~~   88 (358)
                      +..||+|||+ |.||+.+|..++..++  +|++||+++.   .+.   .   ..+....         ...+++..   +
T Consensus         4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---~   77 (503)
T TIGR02279         4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV---T   77 (503)
T ss_pred             CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe---C
Confidence            3458999998 9999999999999998  9999999861   110   0   0111111         11245543   4


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch-HHHHHHHHHhCCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-PIAAEVFKKAGTYNE  167 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t-~~~~~~~~~sg~~~~  167 (358)
                      |+ +++++||+||.+.              .++.++.+++...++++++... |+.||...+-. .++    ...  -.|
T Consensus        78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~-IlasnTStl~i~~iA----~~~--~~p  135 (503)
T TIGR02279        78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADT-IIASNTSSLSITAIA----AGL--ARP  135 (503)
T ss_pred             CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCe-EEEECCCCCCHHHHH----Hhc--Ccc
Confidence            55 5789999999986              4778888888889999996543 45899988643 333    222  235


Q ss_pred             CceEeecccc
Q 018314          168 KKLFGVTTLD  177 (358)
Q Consensus       168 ~kviG~t~ld  177 (358)
                      .|++|+...+
T Consensus       136 ~r~~G~HFf~  145 (503)
T TIGR02279       136 ERVAGLHFFN  145 (503)
T ss_pred             cceEEEeccC
Confidence            6788875444

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.26  E-value=1.4e-05  Score=81.53  Aligned_cols=122  Identities=15%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---------------CCccEEEEecCCcccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---------------~~~~v~~~~~~~d~~~   92 (358)
                      +|||+|||+ |.||..+|..|+..+..-+|+.||+++.+  +..+....               ...+++.   ++|+.+
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~--v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~   74 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPR--IDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEK   74 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHH--HHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHH
Confidence            589999997 99999999999998654489999998622  11221110               0112443   356667


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHH
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAA  156 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~  156 (358)
                      ++++||++|++.+.|...+-...+ -.-+...+.+.++.|.++.+++.+|+.  |-|.+..-.+..
T Consensus        75 ~i~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~  139 (473)
T PLN02353         75 HVAEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEK  139 (473)
T ss_pred             HHhcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHH
Confidence            899999999999988754210000 013455566777777777655444443  778876655543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.25  E-value=1.6e-05  Score=76.06  Aligned_cols=122  Identities=20%  Similarity=0.338  Sum_probs=76.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHH----Hhh----cCCC--------CccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA----DVG----HINT--------RSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~----dl~----~~~~--------~~~v~~~~~~~d   89 (358)
                      .+||+|||+ |.+|..++..++..++  +|++||+++.  .....    .+.    ....        ..+++.   ++|
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence            358999998 9999999999999987  9999999761  11111    111    1111        123443   245


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      + +++++||+||++.              ..+..+.+.+...+.+++ |++++  +||...+-...+   .+..  -.+.
T Consensus        78 ~-~~~~~aD~Vieav--------------pe~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~~s~l---a~~~--~~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAA--------------TEDETVKRKIFAQLCPVLKPEAIL--ATNTSSISITRL---ASAT--DRPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHH---Hhhc--CCcc
Confidence            4 5789999999985              234455666667788877 45533  577776532222   2222  2356


Q ss_pred             ceEeecccc
Q 018314          169 KLFGVTTLD  177 (358)
Q Consensus       169 kviG~t~ld  177 (358)
                      +++|+..++
T Consensus       136 r~~g~h~~~  144 (292)
T PRK07530        136 RFIGIHFMN  144 (292)
T ss_pred             cEEEeeccC
Confidence            888876544

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.21  E-value=1.2e-05  Score=77.39  Aligned_cols=121  Identities=16%  Similarity=0.277  Sum_probs=73.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhh---cC--------CCCccEEEEecCCcccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG---HI--------NTRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~---~~--------~~~~~v~~~~~~~d~~~al   94 (358)
                      .+||+|||+ |.+|..++..|+..++  +|+++|.++.  ......+.   ..        ....+++.   ++|+.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence            468999998 9999999999998887  8999998761  11111110   00        00112343   24555678


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ++||+||++.              ........++...+..+.+... +++||...+...-+   ....+  .+.+++|+.
T Consensus        78 ~~aDlVi~av--------------~~~~~~~~~v~~~l~~~~~~~~-ii~s~tsg~~~~~l---~~~~~--~~~~~ig~h  137 (311)
T PRK06130         78 SGADLVIEAV--------------PEKLELKRDVFARLDGLCDPDT-IFATNTSGLPITAI---AQAVT--RPERFVGTH  137 (311)
T ss_pred             ccCCEEEEec--------------cCcHHHHHHHHHHHHHhCCCCc-EEEECCCCCCHHHH---HhhcC--CcccEEEEc
Confidence            9999999985              2334455566666777664332 34577766543222   22221  246788874

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.21  E-value=8.4e-06  Score=77.80  Aligned_cols=121  Identities=17%  Similarity=0.210  Sum_probs=74.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHH---HHhh-----cCCC--------CccEEEEecCCcc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVA---ADVG-----HINT--------RSEVAGYMGNDQL   90 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~---~dl~-----~~~~--------~~~v~~~~~~~d~   90 (358)
                      .||+|||+ |.+|..+|..++..++  +|++||+++.  ....   .++.     ....        ..+++.   ++++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence            48999998 9999999999999887  8999999861  1110   0110     0000        113443   2456


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      .+++++||+||++.              ..+..+.+.+...+.++++... ++++|...+-...+   ....  -.+.++
T Consensus        76 ~~~~~~aD~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~-il~~~tSt~~~~~l---~~~~--~~~~r~  135 (288)
T PRK09260         76 KAAVADADLVIEAV--------------PEKLELKKAVFETADAHAPAEC-YIATNTSTMSPTEI---ASFT--KRPERV  135 (288)
T ss_pred             HHhhcCCCEEEEec--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCHHHH---Hhhc--CCcccE
Confidence            67899999999985              2345566666667777775432 33566665432222   1222  234577


Q ss_pred             Eeecc
Q 018314          171 FGVTT  175 (358)
Q Consensus       171 iG~t~  175 (358)
                      +|+..
T Consensus       136 ~g~h~  140 (288)
T PRK09260        136 IAMHF  140 (288)
T ss_pred             EEEec
Confidence            78743

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.13  E-value=2e-05  Score=81.06  Aligned_cols=103  Identities=15%  Similarity=0.134  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHH--------hh---cCCC--CccEEEEecCCcccccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAAD--------VG---HINT--RSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~d--------l~---~~~~--~~~v~~~~~~~d~~~al   94 (358)
                      +||+|||+ |.||+.+|..++..++  +|++||+++... ...+        +.   ....  ..+++.   ++|+.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence            58999998 9999999999999988  999999976211 1111        10   0000  112443   24666789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t  152 (358)
                      ++||+||.+.              ..+.++.+++...+.++++... |+.||..++..
T Consensus        79 ~~aD~Vieav--------------pe~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~  121 (495)
T PRK07531         79 AGADWIQESV--------------PERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP  121 (495)
T ss_pred             cCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence            9999999985              3556677777777888876443 45888887644

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.13  E-value=4.1e-05  Score=77.44  Aligned_cols=116  Identities=11%  Similarity=-0.047  Sum_probs=79.2

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      +.-...++|||.|+||+|+||++++..|...+.  +|+.+|....  ......+.   ...+++.... +-+..++.++|
T Consensus       113 ~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~~~~~~~~~~---~~~~~~~~~~-Di~~~~~~~~D  186 (436)
T PLN02166        113 PVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTGRKENLVHLF---GNPRFELIRH-DVVEPILLEVD  186 (436)
T ss_pred             CcccccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCccHhHhhhhc---cCCceEEEEC-ccccccccCCC
Confidence            555567789999999999999999999998887  9999997531  11111111   1123333321 22234678999


Q ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314           99 VVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus        99 iVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      +||++|+...  ....+..+.+..|+.....+++.+++.+.  .+|.+
T Consensus       187 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~  232 (436)
T PLN02166        187 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLT  232 (436)
T ss_pred             EEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEE
Confidence            9999997532  22234567888999999999999998763  45544

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.09  E-value=4.1e-05  Score=73.85  Aligned_cols=121  Identities=19%  Similarity=0.254  Sum_probs=75.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHH--------HhhcCCC---------CccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAA--------DVGHINT---------RSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~--------dl~~~~~---------~~~v~~~~~~~d   89 (358)
                      ++||+|||+ |.+|..++..|+..++  +|++||.++.. ....        .+.+...         ..+++.   ++|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence            468999997 9999999999999987  89999997611 1110        1211110         123443   256


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCc
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (358)
                      +.+++++||+|+++.              ..+..+.+.+...+++..++..++ .||.......-+   .+...  .+.+
T Consensus        76 ~~~a~~~ad~Vi~av--------------pe~~~~k~~~~~~l~~~~~~~~ii-~ssts~~~~~~l---a~~~~--~~~~  135 (308)
T PRK06129         76 LADAVADADYVQESA--------------PENLELKRALFAELDALAPPHAIL-ASSTSALLASAF---TEHLA--GRER  135 (308)
T ss_pred             HHHhhCCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCcceE-EEeCCCCCHHHH---HHhcC--Cccc
Confidence            667889999999985              233445555666677777655444 566665433222   22221  2456


Q ss_pred             eEeec
Q 018314          170 LFGVT  174 (358)
Q Consensus       170 viG~t  174 (358)
                      ++|.+
T Consensus       136 ~~~~h  140 (308)
T PRK06129        136 CLVAH  140 (308)
T ss_pred             EEEEe
Confidence            77765

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.06  E-value=2.5e-05  Score=74.45  Aligned_cols=117  Identities=17%  Similarity=0.241  Sum_probs=80.5

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCCCCCC
Q 018314           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVPRKPG  111 (358)
Q Consensus        33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~~~~g  111 (358)
                      |+||+|++|++++..|...+...+|+.+|+........++.+.....-+.+- ++.+++.++++|+|+||++|+.....+
T Consensus         2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~   81 (280)
T PF01073_consen    2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG   81 (280)
T ss_pred             EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence            8999999999999999998866699999987622221122222110011110 123567789999999999987533333


Q ss_pred             -CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314          112 -MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus       112 -~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                       .....+..-|+.-.+.+.+..++..-+  -+|+|...+++
T Consensus        82 ~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~vv  120 (280)
T PF01073_consen   82 DYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSISVV  120 (280)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCccee
Confidence             457778999999999999999987544  35566666543

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.06  E-value=7e-05  Score=71.67  Aligned_cols=123  Identities=20%  Similarity=0.296  Sum_probs=78.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHH--------HHhhcCCC---------CccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA--------ADVGHINT---------RSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~--------~dl~~~~~---------~~~v~~~~~~~d   89 (358)
                      .+||+|||+ |.||..++..++..+.  +|++||.++.. ..+        .++.+...         ...+..   +++
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~   77 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN   77 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence            458999998 9999999999999886  99999987611 110        11211110         012333   234


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      + +++++||+||.+.              .++.++...+...+.++.+ ++  |++||...+...-+   .+..+  .+.
T Consensus        78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~--il~s~tS~i~~~~l---~~~~~--~~~  135 (295)
T PLN02545         78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSA--ILASNTSSISITRL---ASATQ--RPQ  135 (295)
T ss_pred             H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCc--EEEECCCCCCHHHH---HhhcC--CCc
Confidence            3 6789999999986              4556677777777887764 55  34677777533222   22222  346


Q ss_pred             ceEeeccccH
Q 018314          169 KLFGVTTLDV  178 (358)
Q Consensus       169 kviG~t~lds  178 (358)
                      +++|+...+.
T Consensus       136 r~~g~h~~~p  145 (295)
T PLN02545        136 QVIGMHFMNP  145 (295)
T ss_pred             ceEEEeccCC
Confidence            8888854443

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.00  E-value=3.2e-05  Score=74.55  Aligned_cols=94  Identities=22%  Similarity=0.423  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--CC--------CCccEEEEecCCccccccCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--IN--------TRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~--------~~~~v~~~~~~~d~~~al~~a   97 (358)
                      ++||+|+|| |+-|.++|..|+.+++  +++||.+++.  .+.++..  ..        .+..+..   ++|+.+++++|
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~--~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEE--IVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHH--HHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence            479999998 9999999999999997  9999998762  2222322  21        2445554   47899999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEee
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~t  145 (358)
                      |+||+..  |              ...++++++.+..+- ++..++.+|
T Consensus        73 d~iv~av--P--------------s~~~r~v~~~l~~~l~~~~~iv~~s  105 (329)
T COG0240          73 DIIVIAV--P--------------SQALREVLRQLKPLLLKDAIIVSAT  105 (329)
T ss_pred             CEEEEEC--C--------------hHHHHHHHHHHhhhccCCCeEEEEe
Confidence            9999974  2              455667777776444 577777664

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=97.99  E-value=6.6e-06  Score=78.38  Aligned_cols=120  Identities=21%  Similarity=0.248  Sum_probs=73.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE----Eec----CCccccccC--CCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG----YMG----NDQLGQALE--DSD   98 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~----~~~----~~d~~~al~--~aD   98 (358)
                      |.|+||+|++|+.++..|+..++ .+|+++|.++  ......++.......+++.    ..+    ...+.++++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            67999999999999999998865 5899999987  3444555532111112221    111    122345677  999


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee----CCCCcc
Q 018314           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS----NPVNST  151 (358)
Q Consensus        99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t----NP~d~~  151 (358)
                      +|+++|....-+  ...-.+.+..|+--.+.+++...+++-+-++.+-|    ||.++|
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptnvm  138 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVM  138 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHH
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHH
Confidence            999998753322  23456778999999999999999998776666543    555444

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.98  E-value=5.2e-05  Score=74.88  Aligned_cols=105  Identities=17%  Similarity=0.277  Sum_probs=70.7

Q ss_pred             cccCCCCCCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCCc---HHHHHHhhcC--C--------CCccE
Q 018314           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT---PGVAADVGHI--N--------TRSEV   81 (358)
Q Consensus        20 ~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~---~~~~~dl~~~--~--------~~~~v   81 (358)
                      -|-+.....+||+|||+ |..|.++|..|+.++.     ..+|.||..++.   ...+.++.+.  .        .+.++
T Consensus         3 ~~~~~~~~~~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni   81 (365)
T PTZ00345          3 LFQKLRCGPLKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNI   81 (365)
T ss_pred             chhhcccCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCce
Confidence            35555566789999998 9999999999998761     238999988762   2334444421  1        23456


Q ss_pred             EEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--hC-CCeEEEEe
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK--YC-PNAIVNMI  144 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~--~~-p~a~iiv~  144 (358)
                      ...   +|+.+++++||+||++.  |              ...++++++.++.  +- ++..+|.+
T Consensus        82 ~~t---sdl~eav~~aDiIvlAV--P--------------sq~l~~vl~~l~~~~~l~~~~~iIS~  128 (365)
T PTZ00345         82 VAV---SDLKEAVEDADLLIFVI--P--------------HQFLESVLSQIKENNNLKKHARAISL  128 (365)
T ss_pred             EEe---cCHHHHHhcCCEEEEEc--C--------------hHHHHHHHHHhccccccCCCCEEEEE
Confidence            553   56778999999999874  1              3456777777776  33 34455544

>PLN02427 UDP-apiose/xylose synthase

Probab=97.98  E-value=7.8e-05  Score=73.81  Aligned_cols=120  Identities=13%  Similarity=0.063  Sum_probs=75.3

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcC---CCCccEEEEec----CCcccc
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHI---NTRSEVAGYMG----NDQLGQ   92 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~---~~~~~v~~~~~----~~d~~~   92 (358)
                      +--++.++|||.|+||+|++|++++..|... +.  +|+.+|......  ..+...   ....+++...+    ..++.+
T Consensus         7 ~~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~--~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~   82 (386)
T PLN02427          7 LDGKPIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKI--KHLLEPDTVPWSGRIQFHRINIKHDSRLEG   82 (386)
T ss_pred             CCCCcccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhh--hhhhccccccCCCCeEEEEcCCCChHHHHH
Confidence            3446677899999999999999999999887 45  899999654211  111111   01113333221    123456


Q ss_pred             ccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           93 ALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +++++|+||++|+.....  .....+.+..|+.-...+.+..++.+  ..+|.+|.
T Consensus        83 ~~~~~d~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         83 LIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             HhhcCCEEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            788999999999853221  12234556678877777788777665  34555543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.88  E-value=9.2e-05  Score=71.38  Aligned_cols=101  Identities=21%  Similarity=0.361  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCC------CCccEEEEecCCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHIN------TRSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~------~~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      ||||+|||+ |.+|+.++..|+..++  ++.+||+++..  ....+..+..      .+..+..   ++|+.++++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence            579999998 9999999999999887  89999987522  1111110100      0112332   2355567889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                      ||++...                ..++++.+.+..+. |+.++|..+|-++.
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence            9998621                12344545555553 67778888877653

>PLN00198 anthocyanidin reductase; Provisional

Probab=97.88  E-value=0.0003  Score=68.20  Aligned_cols=175  Identities=13%  Similarity=0.076  Sum_probs=96.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVI  101 (358)
                      .++||.|+||+|++|++++..|...+.  +|+.++++. ......++.......+++.+.+    ..++.+.++++|+||
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            457899999999999999999999886  787776654 2222111111110012333221    123446678999999


Q ss_pred             EcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC-----------cchHHH--HHHHHHhCCCCC
Q 018314          102 IPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-----------STVPIA--AEVFKKAGTYNE  167 (358)
Q Consensus       102 i~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d-----------~~t~~~--~~~~~~sg~~~~  167 (358)
                      ++|+.......+ ..+++..|+.....+.+.+.+...-..+|.+|.-..           .+..-.  ..-..... .+|
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~-~~p  164 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSE-KPP  164 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhc-CCc
Confidence            999743222122 234668899999999999887642224444433110           000000  00000011 234


Q ss_pred             CceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      ...+|.+.....++...+++..|++..-++ ..|+|.+
T Consensus       165 ~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        165 TWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            445566544445555556666677655554 3477765

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=97.87  E-value=0.00024  Score=69.39  Aligned_cols=168  Identities=15%  Similarity=0.054  Sum_probs=99.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhh-cC--CCCccEEEEec-C---CccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG-HI--NTRSEVAGYMG-N---DQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~-~~--~~~~~v~~~~~-~---~d~~~al~~a   97 (358)
                      +++||.|+||+|++|++++..|...+.  +|+.+|....  .....++. ..  ....+++.+.+ -   .++.+.++++
T Consensus        14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~   91 (348)
T PRK15181         14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV   91 (348)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence            457999999999999999999998886  8999997541  11111111 00  00113333321 1   1233457899


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC------CCcchHHHHHHHHHhCCCCCCc
Q 018314           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VNSTVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP------~d~~t~~~~~~~~~sg~~~~~k  169 (358)
                      |+||++|+....+  .+...+....|+.-..++.+.+++.... .++.+|..      .+..  .    ..... ..|..
T Consensus        92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~--~----~e~~~-~~p~~  163 (348)
T PRK15181         92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLP--K----IEERI-GRPLS  163 (348)
T ss_pred             CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCC--C----CCCCC-CCCCC
Confidence            9999999754322  2334567889999999999999887543 33433311      1110  0    01111 23445


Q ss_pred             eEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                      .+|.+.+...++....++..+++...++. .++|.+
T Consensus       164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            66776554555555556666777666653 477865

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.00024  Score=72.66  Aligned_cols=124  Identities=19%  Similarity=0.256  Sum_probs=86.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec----CCccccccCC--CC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG----NDQLGQALED--SD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~--aD   98 (358)
                      +.+.|-|+||+|++|+.++..++..++ .+|+++|.+|  ......+|.+.....++..+.+    .+-++.++++  .|
T Consensus       249 ~gK~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd  327 (588)
T COG1086         249 TGKTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD  327 (588)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence            456899999999999999998888753 6999999998  3344445554321233444332    1334568888  99


Q ss_pred             EEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----eCCCCcc
Q 018314           99 VVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI----SNPVNST  151 (358)
Q Consensus        99 iVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~----tNP~d~~  151 (358)
                      +|+++|....-|=.  .-.+-...|+--.+++++...+++=+..+++-    .||.++|
T Consensus       328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvm  386 (588)
T COG1086         328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVM  386 (588)
T ss_pred             eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHh
Confidence            99999976554433  34567789999999999999988866655554    3555443

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.86  E-value=0.00012  Score=66.38  Aligned_cols=97  Identities=24%  Similarity=0.350  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ||+++|+|+ |++|++++..++..++  ||..-..+..+.....-...  .+.+++.    ..++|.+.||+||++.  |
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l--~~~i~~~----~~~dA~~~aDVVvLAV--P   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAAL--GPLITGG----SNEDAAALADVVVLAV--P   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhh--ccccccC----ChHHHHhcCCEEEEec--c
Confidence            679999997 9999999999999998  88888666532222211111  1345542    2368999999999985  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                +.....+.+++...+    .+-++|-.|||.+
T Consensus        70 ----------~~a~~~v~~~l~~~~----~~KIvID~tnp~~   97 (211)
T COG2085          70 ----------FEAIPDVLAELRDAL----GGKIVIDATNPIE   97 (211)
T ss_pred             ----------HHHHHhHHHHHHHHh----CCeEEEecCCCcc
Confidence                      234444444444433    3668888999963

>PLN02206 UDP-glucuronate decarboxylase

Probab=97.85  E-value=0.00023  Score=72.23  Aligned_cols=118  Identities=12%  Similarity=-0.020  Sum_probs=77.6

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      +.-+..+.|||.|+||+|+||++++..|...+.  +|+.+|...  ......+.  .. ..+++.... +-+..++.++|
T Consensus       112 ~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~~~~~~~~--~~-~~~~~~i~~-D~~~~~l~~~D  185 (442)
T PLN02206        112 PLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGRKENVMHH--FS-NPNFELIRH-DVVEPILLEVD  185 (442)
T ss_pred             ccccccCCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhhhh--cc-CCceEEEEC-CccChhhcCCC
Confidence            444556779999999999999999999999887  899888642  11111111  11 123333221 11234678899


Q ss_pred             EEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           99 VVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        99 iVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +||++|+...  ....+-.+.+..|+.....+.+.+++...  .+|.++.
T Consensus       186 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~SS  233 (442)
T PLN02206        186 QIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTST  233 (442)
T ss_pred             EEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECC
Confidence            9999997532  22234467788999999999999988753  4554433

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.82  E-value=0.00024  Score=71.33  Aligned_cols=114  Identities=25%  Similarity=0.296  Sum_probs=70.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CCccEEEEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~~   92 (358)
                      |||+|||. |.||..++..|+..++  +|+.||+++..  ..++....                ...+++.   ++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence            58999997 9999999999999888  89999987622  22222211                0112443   245567


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHHHH
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAA  156 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~~~  156 (358)
                      ++++||+||++...|...+.      .-+...+.+..+.+.++. ++.+++.. |-|.+....+..
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~  132 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVK  132 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHH
Confidence            78999999999877654321      123444444455555543 44444332 455555545543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.78  E-value=0.00015  Score=70.92  Aligned_cols=100  Identities=18%  Similarity=0.217  Sum_probs=66.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC----C-------CCccEEEEecCCcccccc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----N-------TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~-------~~~~v~~~~~~~d~~~al   94 (358)
                      ++++||+|||+ |.+|.+++..|+..+   ++++|..++..  ..++...    .       .+.++..   ++|+.+++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~   75 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAA   75 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHH
Confidence            46789999998 999999999999887   47788865422  2222211    0       1123443   35666789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                      +++|+||++.-                ...++++++.+..+- ++..+|.++|-.+.
T Consensus        76 ~~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~  116 (341)
T PRK12439         76 NCADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ  116 (341)
T ss_pred             hcCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence            99999999851                234556666666543 56678889998764

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.78  E-value=5.7e-05  Score=59.64  Aligned_cols=94  Identities=22%  Similarity=0.304  Sum_probs=59.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC-CCcEEEEE-ecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ||+|||+ |++|.+++..+...+ ...+|.++ +.++  ....++.... .  +..+  ..+..+++++||+||++.-  
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~--~~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~--   70 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSP--EKAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK--   70 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSH--HHHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcH--HHHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence            8999997 999999999998887 23488866 7754  2222232211 1  2222  1134688999999999862  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        |            ..+.++++.+....++..+|-++||
T Consensus        71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred             --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence              1            2244555566445577788888776

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.76  E-value=0.00017  Score=70.63  Aligned_cols=95  Identities=19%  Similarity=0.364  Sum_probs=62.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC------CCcEEEEEecCC---cHHHHHHhh--cCC--------CCccEEEEecCCcc
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNP------LVSRLALYDIAN---TPGVAADVG--HIN--------TRSEVAGYMGNDQL   90 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~------~~~ei~L~D~~~---~~~~~~dl~--~~~--------~~~~v~~~~~~~d~   90 (358)
                      ||+|||| |+.|.++|..|+.++      +..+|.||.+++   .......++  |..        .+..++.   ++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence            7999998 999999999999876      224999999854   222333332  211        1334554   3577


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~  144 (358)
                      .+++++||+||++.  |              ...++++++.+..+- ++..+|.+
T Consensus        77 ~eal~~ADiIIlAV--P--------------s~~i~~vl~~l~~~l~~~~~iVs~  115 (342)
T TIGR03376        77 VEAAKGADILVFVI--P--------------HQFLEGICKQLKGHVKPNARAISC  115 (342)
T ss_pred             HHHHhcCCEEEEEC--C--------------hHHHHHHHHHHHhhcCCCCEEEEE
Confidence            88999999999974  2              345566666666553 34445544

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=97.76  E-value=0.00028  Score=75.07  Aligned_cols=179  Identities=13%  Similarity=0.086  Sum_probs=104.7

Q ss_pred             cccccccCCCCCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc----
Q 018314           16 AGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----   89 (358)
Q Consensus        16 ~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----   89 (358)
                      .|.|++.-+-.++|||.|+||+|++|++++..|... ++  +|+.+|.......  ++...   .+++...+ -.|    
T Consensus       303 ~~~~~~~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~  375 (660)
T PRK08125        303 RLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEW  375 (660)
T ss_pred             EecccchhhhhcCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHH
Confidence            355665555568899999999999999999988874 56  8999997652111  11111   12332211 111    


Q ss_pred             cccccCCCCEEEEcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC---
Q 018314           90 LGQALEDSDVVIIPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT---  164 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~---  164 (358)
                      +.++++++|+||++|+...  .......+.+..|+.....+.+.++++. . .+|.+|.. .+....-...+.+...   
T Consensus       376 l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~-~vyg~~~~~~~~E~~~~~~  452 (660)
T PRK08125        376 IEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTS-EVYGMCTDKYFDEDTSNLI  452 (660)
T ss_pred             HHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcch-hhcCCCCCCCcCccccccc
Confidence            2346789999999987543  2223455677889999999999999876 3 44434332 1100000000001000   


Q ss_pred             ---C-CCCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314          165 ---Y-NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       165 ---~-~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                         . ++...+|.+.....++....++..+++..-++. .++|.+
T Consensus       453 ~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        453 VGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             cCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence               0 122356776554556656667777777666664 467764

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=97.73  E-value=0.00035  Score=66.25  Aligned_cols=167  Identities=13%  Similarity=0.059  Sum_probs=94.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe----cCCccccccCC--CCEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDVV  100 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~--aDiV  100 (358)
                      ||.|+||+|++|++++..|...+...+|+++|....   .....++...   .++....    +.+++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999998887663348888886431   1111222211   1222221    11234456666  8999


Q ss_pred             EEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-----CcchHHHHHHHHHhCCCCCCceEee
Q 018314          101 IIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       101 Ii~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-----d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      |.+|+....  ....-...+..|......+++.+.+...+..++.+|...     .....+     .......+...+|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~-----~e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAF-----TETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCc-----CCCCCCCCCCchHH
Confidence            999875321  122334567889999999999988876555555544311     000000     01111334445565


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                      +.....++-..+++..+++..-++. .++|..
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            5443445545556666766544443 356643

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.73  E-value=0.00017  Score=63.05  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=46.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+||++||. |.+|+.++..|...++  +|+.||++.  ....++.+..    .+..   +++.+++++||+|+.+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~~---~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEVA---DSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEEE---SSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhhh---hhhhhHhhcccceEeec
Confidence            679999997 9999999999999998  999999864  2233344322    3332   34678899999999974

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.72  E-value=0.00019  Score=69.56  Aligned_cols=100  Identities=14%  Similarity=0.339  Sum_probs=63.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--C------CCCccEEEEecCCcccccc-CCCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--I------NTRSEVAGYMGNDQLGQAL-EDSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~------~~~~~v~~~~~~~d~~~al-~~aDi   99 (358)
                      |||+|||| |.+|..++..|...+.  +|.||++++.......-.+  .      ..+..++..   +|+.+++ .++|+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~~Dl   74 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK---SAIDEVLSDNATC   74 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe---CCHHHHHhCCCCE
Confidence            58999998 9999999999999886  8999998652211111111  1      112234432   4455566 58999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-h-CCCeEEEEeeCCCCc
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-Y-CPNAIVNMISNPVNS  150 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~-~p~a~iiv~tNP~d~  150 (358)
                      ||++.-                ..-+.++++.+.. + .++..++..+|=.+.
T Consensus        75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~  111 (326)
T PRK14620         75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK  111 (326)
T ss_pred             EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence            999851                2334444555554 3 467777778887753

>PLN02650 dihydroflavonol-4-reductase

Probab=97.71  E-value=0.00067  Score=66.16  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcC-CCCccEEEEe----cCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiVI  101 (358)
                      .++|.|+||+|++|++++..|+..+.  +|++++.+.. .....++... ....++....    ....+.++++++|+||
T Consensus         5 ~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi   82 (351)
T PLN02650          5 KETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF   82 (351)
T ss_pred             CCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence            44899999999999999999998887  8888877542 1111122111 1111222221    1123456788999999


Q ss_pred             EcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          102 IPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       102 i~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++|+...... ....+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        83 H~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~S  127 (351)
T PLN02650         83 HVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTS  127 (351)
T ss_pred             EeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            9987532111 1223567889999999999988765323455443

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.71  E-value=0.00017  Score=69.48  Aligned_cols=81  Identities=23%  Similarity=0.367  Sum_probs=60.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ..|||+|||+ |.+|.+++..|...++  +|.+||+++.                      +++.+++++||+||++.  
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~v--   55 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAV--   55 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEEC--
Confidence            3579999997 9999999999999987  9999998642                      12356788999999985  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV  148 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~  148 (358)
                      |              .+.++++++.+..+  .++.+++..|+..
T Consensus        56 p--------------~~~~~~v~~~l~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         56 S--------------MKGVRPVAEQVQALNLPPETIIVTATKGL   85 (308)
T ss_pred             C--------------hHHHHHHHHHHHHhcCCCCcEEEEeCCcc
Confidence            1              13455566666653  4677777777733

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=97.70  E-value=0.00045  Score=66.78  Aligned_cols=120  Identities=14%  Similarity=0.078  Sum_probs=82.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cH--HHHHHhhcCCCCccEEEEe----cCCccccccCCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TP--GVAADVGHINTRSEVAGYM----GNDQLGQALEDSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aD   98 (358)
                      ..++|+|+||+|++|+.+...|.++|+  +|+=-=+++  .+  .+..+|....  .+++.+.    ..+.+.+|++|||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd   80 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD   80 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence            567999999999999999999999998  554443333  11  2345555333  1233321    2345678999999


Q ss_pred             EEEEcCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           99 VVIIPAGVPRKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        99 iVIi~ag~~~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      .|+++|....-... .-.+++.-.++-...+.+.+.++. ...=+++|+....+
T Consensus        81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~aAv  133 (327)
T KOG1502|consen   81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTAAV  133 (327)
T ss_pred             EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHHHh
Confidence            99999975332222 244688888999999999999887 44445677766444

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=97.69  E-value=0.00075  Score=64.58  Aligned_cols=107  Identities=13%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcC-CCCccEEEEe----cCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHI-NTRSEVAGYM----GNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~-~~~~~v~~~~----~~~d~~~al~~aDiV  100 (358)
                      +.+||.|+||+|++|++++..|...++  +|+.++.+.. ......+... ....+++...    ...++.++++++|+|
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~V   80 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGV   80 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEE
Confidence            346899999999999999999999887  8888877652 1111222111 0011233221    112345678899999


Q ss_pred             EEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314          101 IIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY  135 (358)
Q Consensus       101 Ii~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~  135 (358)
                      |++|+..... .....+.+..|+.-...+.+.+.+.
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~  116 (322)
T PLN02662         81 FHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKV  116 (322)
T ss_pred             EEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999753321 2223367788999999999988776

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.69  E-value=0.00054  Score=65.31  Aligned_cols=103  Identities=19%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC---CccEEEE-ecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---RSEVAGY-MGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---~~~v~~~-~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|+|+ |.+|..++..|...+.  +|.++|.+.....  .+.....   ....... ...++..+ ++++|+||++.
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~   74 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV   74 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence            58999998 9999999999998886  8999998542111  1111110   0011100 01233333 48999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVP  153 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~  153 (358)
                      ...            .    ..++.+.+..+ .++..++...|..+....
T Consensus        75 k~~------------~----~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~  108 (304)
T PRK06522         75 KAY------------Q----LPAALPSLAPLLGPDTPVLFLQNGVGHLEE  108 (304)
T ss_pred             ccc------------c----HHHHHHHHhhhcCCCCEEEEecCCCCcHHH
Confidence            321            1    23344444443 366788889999876554

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=97.68  E-value=0.00032  Score=69.96  Aligned_cols=113  Identities=20%  Similarity=0.266  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--------------CCccEEEEecCCcccccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~al   94 (358)
                      |||+|||+ |.||..+|..++. ++  +|+.||+++..  +..+....              ...++..   +.|..++.
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~   71 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY   71 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence            58999997 9999999987775 66  89999998621  11222210              0113332   34455778


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeCCCCcchHHH
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN-MISNPVNSTVPIA  155 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii-v~tNP~d~~t~~~  155 (358)
                      ++||+||++...|......     .-+...+++.++.|.+..|+.++| --|-|.+..-.+.
T Consensus        72 ~~ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~  128 (388)
T PRK15057         72 RDADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH  128 (388)
T ss_pred             cCCCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence            9999999997766322111     123344444445554434444433 3466776655544

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.67  E-value=0.00026  Score=68.80  Aligned_cols=97  Identities=18%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-------C-CCCccEEEEecCCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-------I-NTRSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-------~-~~~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      +|||+|||+ |.+|..++..|+..++  +|++||+++.......-.+       . ..+.++..   ++++.++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELYP---TADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCCCE
Confidence            679999998 9999999999998887  8999998652222111111       0 01112333   2455677899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      ||++.-.    .            .++++.+.   ..|+.+++.++|..+
T Consensus        78 Vi~~v~~----~------------~~~~v~~~---l~~~~~vi~~~~Gi~  108 (328)
T PRK14618         78 AVVAVPS----K------------ALRETLAG---LPRALGYVSCAKGLA  108 (328)
T ss_pred             EEEECch----H------------HHHHHHHh---cCcCCEEEEEeeccc
Confidence            9998521    0            12333322   335667788888654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.66  E-value=0.00031  Score=68.37  Aligned_cols=99  Identities=24%  Similarity=0.255  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-------------CccEEEEecCCcccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-------------RSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-------------~~~v~~~~~~~d~~~al   94 (358)
                      +|||+|||+ |.||..++..|...++  +|.++|+++.. .  .+.....             +.++..   +++. +++
T Consensus         2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~--~~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~-~~~   71 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-D--ELRAHGLTLTDYRGRDVRVPPSAIAF---STDP-AAL   71 (341)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-H--HHHhcCceeecCCCcceecccceeEe---ccCh-hhc
Confidence            478999998 9999999999999987  89999975421 1  1111110             011222   2343 578


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcch
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV  152 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t  152 (358)
                      +++|+||++...+.                ..++++.+..+ .++.+++..+|..+...
T Consensus        72 ~~~D~vil~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~~  114 (341)
T PRK08229         72 ATADLVLVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNAD  114 (341)
T ss_pred             cCCCEEEEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcHH
Confidence            99999999863221                12333444444 35677777889876543

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.65  E-value=0.00046  Score=65.96  Aligned_cols=119  Identities=10%  Similarity=0.129  Sum_probs=70.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-----CccEEEE-ecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----RSEVAGY-MGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~~~v~~~-~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|+|+ |.+|..++..|+..++  +|.+++. +..-.  .+.+...     ....... ...+|..+..+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAK--ALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHH--HHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999998 9999999999999887  8999998 41111  1221110     0011000 001333445589999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe-eccc
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG-VTTL  176 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG-~t~l  176 (358)
                      +...+                -+.++.+.+..+ .++..++.+.|..+....+.    +.   +|++++++ ++..
T Consensus        75 avk~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~----~~---~~~~~v~~g~~~~  127 (305)
T PRK12921         75 AVKAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLE----PY---FGRERVLGGVVFI  127 (305)
T ss_pred             Eeccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHH----Hh---CCcccEEEEEEEE
Confidence            86321                123344455544 35677888899887554331    22   66677774 4433

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=97.59  E-value=0.00057  Score=66.21  Aligned_cols=113  Identities=14%  Similarity=0.209  Sum_probs=74.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEEe----cCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVI  101 (358)
                      .++|.|+||+|++|++++..|+..+...+|+++|.+....  ...++..    .++..+.    +..++.+++++.|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            4689999999999999999988875334899998765221  1122211    1232221    1123456778899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++||....+  ..+..+.+..|+.-...+.+.+.+.+.. .+|.+|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2344577889999999999998876543 455454

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=97.57  E-value=0.0013  Score=64.02  Aligned_cols=114  Identities=18%  Similarity=0.170  Sum_probs=71.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe----cCCccccccCC--CCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM----GNDQLGQALED--SDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~--aDi   99 (358)
                      +++|.|+||+|++|++++..|+..+.  +|+.+|.+..  ......+.. .  .++....    +..++.+.+++  .|+
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~Dl~~~~~~~~~~~~~~~d~   78 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNL-A--KKIEDHFGDIRDAAKLRKAIAEFKPEI   78 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhh-c--CCceEEEccCCCHHHHHHHHhhcCCCE
Confidence            46899999999999999999999886  8998987652  111111211 1  1121111    11223344554  599


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       100 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||++|+.+...  ..+-...+..|+.....+.+.+.+.+....+|.+|.
T Consensus        79 vih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS  127 (349)
T TIGR02622        79 VFHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS  127 (349)
T ss_pred             EEECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence            99999854221  123345678889889999998877653335565554

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=97.54  E-value=0.00062  Score=66.28  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=69.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-----CccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~al~~aDiVI  101 (358)
                      ||||.|+||+|++|+.++..|... +.  +|+.+|....  ...++...   ..++.+...     .++.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            469999999999999999998875 45  8999996431  11122111   123332211     12234568999999


Q ss_pred             EcCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          102 IPAGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       102 i~ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ++|+...  ....+-......|+.....+.+..++..  ..+|.+|.
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS  118 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  118 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEec
Confidence            9987532  2223334556778888888888888764  35554443

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.53  E-value=0.00036  Score=67.23  Aligned_cols=105  Identities=10%  Similarity=-0.021  Sum_probs=69.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVIi~a  104 (358)
                      |||.|+||+|++|+.++..|...++  +|+.++++....  ..+.+.    .++...    +.+++.++++++|+||.++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~----~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~   72 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEW----GAELVYGDLSLPETLPPSFKGVTAIIDAS   72 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhc----CCEEEECCCCCHHHHHHHHCCCCEEEECC
Confidence            5899999999999999999998887  899998764221  112211    112111    1234567899999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +....   ...++...|......+.+.+++.+-+ .+|.+|
T Consensus        73 ~~~~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         73 TSRPS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CCCCC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            53221   11234566778888888888887654 344443

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.52  E-value=0.00043  Score=66.86  Aligned_cols=123  Identities=15%  Similarity=0.257  Sum_probs=72.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH---HhhcCCCCc---cEEEEecCCccccccCCC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA---DVGHINTRS---EVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~---dl~~~~~~~---~v~~~~~~~d~~~al~~a   97 (358)
                      |+..+|||+|+|+ |.||..++..|...++  ++.+++.+..+....   .+.......   .+...   ++ .++...+
T Consensus         1 ~~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~   73 (313)
T PRK06249          1 MDSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RS-AEDMPPC   73 (313)
T ss_pred             CCCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cc-hhhcCCC
Confidence            3456689999998 9999999999999886  899999865221111   000000000   12221   22 2356789


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cc
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~  175 (358)
                      |+||++.-..    +        .    .+..+.+... .|++.++...|=.+....+.    +.   +|+.+|++- +.
T Consensus        74 D~vilavK~~----~--------~----~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~----~~---~~~~~v~~g~~~  130 (313)
T PRK06249         74 DWVLVGLKTT----A--------N----ALLAPLIPQVAAPDAKVLLLQNGLGVEEQLR----EI---LPAEHLLGGLCF  130 (313)
T ss_pred             CEEEEEecCC----C--------h----HhHHHHHhhhcCCCCEEEEecCCCCcHHHHH----HH---CCCCcEEEEeee
Confidence            9999985221    1        1    2233333333 37888888899887544332    22   677787754 44


Q ss_pred             c
Q 018314          176 L  176 (358)
Q Consensus       176 l  176 (358)
                      .
T Consensus       131 ~  131 (313)
T PRK06249        131 I  131 (313)
T ss_pred             E
Confidence            3

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.51  E-value=0.0012  Score=57.90  Aligned_cols=93  Identities=27%  Similarity=0.296  Sum_probs=66.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCCCCEEEEcCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiVIi~ag~  106 (358)
                      |.|+||+|.+|+.++..|...+.  +|+++-+++.+..  +      ...++...+ .   +++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  9999987753222  1      123444332 1   2346789999999999876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +.+           ..+.++.+.+.+++.+.. .++.+|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            543           277888888888887644 344333

...

>PLN02214 cinnamoyl-CoA reductase

Probab=97.50  E-value=0.0017  Score=63.44  Aligned_cols=105  Identities=13%  Similarity=0.030  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (358)
                      ++++|.|+||+|++|++++..|...+.  +|+..+.+...   .....+....  .++....    +..++.++++++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGK--ERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCC--CcEEEEecCcCChHHHHHHHhcCCE
Confidence            456899999999999999999999887  88888875421   1111222111  1233221    12344567889999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      ||++|+...   ....+.+..|+.-...+.+.+++...+
T Consensus        85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~  120 (342)
T PLN02214         85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK  120 (342)
T ss_pred             EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            999997532   234566788999999999998877544

>PLN02778 3,5-epimerase/4-reductase

Probab=97.50  E-value=0.0021  Score=61.61  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=64.6

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +.+...|||.|+||+|++|++++..|...+.  ++++...+.  ......                  ++.+  .+.|+|
T Consensus         4 ~~~~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~~~~~v~~------------------~l~~--~~~D~V   61 (298)
T PLN02778          4 TAGSATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLENRASLEA------------------DIDA--VKPTHV   61 (298)
T ss_pred             CCCCCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccCCHHHHHH------------------HHHh--cCCCEE
Confidence            4455668999999999999999999998886  676442211  111111                  1111  268999


Q ss_pred             EEcCCCCCCCC-----CCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          101 IIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       101 Ii~ag~~~~~g-----~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      |++|+....+.     ....+.+..|......+++..++.+..
T Consensus        62 iH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         62 FNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             EECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99998643222     234677889999999999999988643

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.49  E-value=0.0029  Score=60.82  Aligned_cols=117  Identities=13%  Similarity=0.079  Sum_probs=71.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhc-CCCCccEEEEe----cCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGH-INTRSEVAGYM----GNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~-~~~~~~v~~~~----~~~d~~~al~~aDiV  100 (358)
                      +.++|.|+||+|++|++++..|...+.  +|++.+++... .....+.. .....+++...    ...++.+++++.|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence            356899999999999999999999887  78877765421 11111111 11111233221    112344567889999


Q ss_pred             EEcCCCCCCC-CC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKP-GM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~-g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |++||..... .. .-...+..|+.....+.+.+.++.....+|++|
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S  128 (325)
T PLN02989         82 FHTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS  128 (325)
T ss_pred             EEeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence            9999853211 11 224567788888888888887754223444443

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=97.47  E-value=0.0019  Score=62.95  Aligned_cols=176  Identities=14%  Similarity=0.102  Sum_probs=95.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccC--CCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~--~aDiVI  101 (358)
                      |+||.|+||+|++|++++..|...+. ..++++|..+.......+.+.....++....    +.+++.++++  +.|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            46899999999999999999998874 2466777543211111121110001222211    1123344555  389999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEeeCCCCcchHHHH--HHHHHhCCCCCCc
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIAA--EVFKKAGTYNEKK  169 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~iiv~tNP~d~~t~~~~--~~~~~sg~~~~~k  169 (358)
                      ++||.....  ..........|+.....+.+.+.++.       +. ..++.+|... +....-.  .-..+.....+..
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~E~~~~~p~s  158 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDE-VYGDLHSTDDFFTETTPYAPSS  158 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchh-hcCCCCCCCCCcCCCCCCCCCC
Confidence            999864321  12235677889988888888887652       12 2344443321 1000000  0000111133445


Q ss_pred             eEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      .+|.+.....++...+++..+++..-++ ..++|.+.
T Consensus       159 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~  195 (355)
T PRK10217        159 PYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH  195 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence            5666655556666666777777655555 35677653

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=97.46  E-value=0.00094  Score=63.77  Aligned_cols=112  Identities=17%  Similarity=0.142  Sum_probs=73.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |||.|+||+|.+|+.++..|...+.  +|+.+|.+....  .++.+.... -+..- ....++.++++++|+||..++..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~-~~~~D~~~~~~l~~~~~~~d~vi~~a~~~   75 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDVE-IVEGDLRDPASLRKAVAGCRALFHVAADY   75 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCce-EEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence            4899999999999999999998886  899999865221  111111100 11110 01123456788999999998653


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .....+..+....|+.....+.+.+.+..-. .+|..+.
T Consensus        76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  113 (328)
T TIGR03466        76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSS  113 (328)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEec
Confidence            2223445667788999899999988876533 3444443

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=97.45  E-value=0.00055  Score=67.67  Aligned_cols=169  Identities=12%  Similarity=0.018  Sum_probs=95.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~  103 (358)
                      .+.|||.|+||+|++|++++..|...++  +|+.+|..... ..   .............  ...++.++++++|+||++
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   92 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HM---SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNL   92 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cc---ccccccceEEECCCCCHHHHHHHHhCCCEEEEc
Confidence            4568999999999999999999998887  89999975311 00   0000000111000  011233456799999999


Q ss_pred             CCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-----Ccch---HHHHHHHHH-hCCCCCCceE
Q 018314          104 AGVPRKPG---MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-----NSTV---PIAAEVFKK-AGTYNEKKLF  171 (358)
Q Consensus       104 ag~~~~~g---~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-----d~~t---~~~~~~~~~-sg~~~~~kvi  171 (358)
                      |+.....+   ......+..|+.....+++.+++...+.+ |.+|...     ....   .+.   -.. .+ +.|...+
T Consensus        93 Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~-V~~SS~~vYg~~~~~~~~~~~~---E~~~~p-~~p~s~Y  167 (370)
T PLN02695         93 AADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF-FYASSACIYPEFKQLETNVSLK---ESDAWP-AEPQDAY  167 (370)
T ss_pred             ccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEE-EEeCchhhcCCccccCcCCCcC---cccCCC-CCCCCHH
Confidence            86432111   12233567899999999999888765543 4343321     0000   000   000 01 3345566


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      |.+.....++-...++..+++..-++. .++|.++
T Consensus       168 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~  202 (370)
T PLN02695        168 GLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFG  202 (370)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence            665444555544456667776555553 4777654

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.41  E-value=0.0023  Score=66.51  Aligned_cols=115  Identities=19%  Similarity=0.162  Sum_probs=71.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhc-----CC--CCccEEEEe----cCCcccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----IN--TRSEVAGYM----GNDQLGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~-----~~--~~~~v~~~~----~~~d~~~al   94 (358)
                      .+.|.|+||+|++|..++..|+..+.  +|++++++...  ....++.+     ..  ...++....    ..+++.+++
T Consensus        80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            45799999999999999999998887  89999887522  22222211     01  001222221    112444578


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .++|+||+++|........-...+..|......+++.+.+.+-. .||+++
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            99999999998654321122234556777788888888776543 445444

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.39  E-value=0.0015  Score=59.30  Aligned_cols=98  Identities=21%  Similarity=0.328  Sum_probs=60.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH---------------HHHhhcCCCCccEEEEe--
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYM--   85 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~--   85 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|+|+|.+.     ...+               ...|.+.....++..+.  
T Consensus        21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~   98 (200)
T TIGR02354        21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK   98 (200)
T ss_pred             CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence            458999998 9999999999999985 5899999982     1111               01111111223344321  


Q ss_pred             -cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314           86 -GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus        86 -~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                       ..+++.+.++++|+||.+.               +|.+.-..+.+.+.+..+..+++
T Consensus        99 i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii  141 (200)
T TIGR02354        99 ITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLI  141 (200)
T ss_pred             CCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEE
Confidence             1123345688999999884               45555556666666655544444

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=97.39  E-value=0.0018  Score=65.12  Aligned_cols=110  Identities=20%  Similarity=0.221  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC----------------CccEEEEecCCccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLG   91 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~   91 (358)
                      ++||+|||. |.||..+|..|+..++  +|+.||+++..-..  +.....                ...+..   ++   
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~---   71 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TT---   71 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ec---
Confidence            579999997 9999999999999987  99999997632222  221110                012222   12   


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEe-eCCCCcchHHH
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIA  155 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~-tNP~d~~t~~~  155 (358)
                       .+++||+||++...|.+.+.      ..+...+.+.++.|.++.+ +.++|.- |.|.+..-.+.
T Consensus        72 -~~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~  130 (415)
T PRK11064         72 -TPEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA  130 (415)
T ss_pred             -ccccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence             24589999999887754321      1234444555556666553 4443332 55666554443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=97.38  E-value=0.0031  Score=63.65  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC------------CccEEEEecCCcccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT------------RSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~------------~~~v~~~~~~~d~~~al   94 (358)
                      .+|||+|||- |.||..+|..|+.. +  +|+.||+++.  .+..|.....            ..++..   +++ .+++
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~~-~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~-~~~~   74 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGKS-R--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSE-IEKI   74 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhcC-C--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeC-HHHH
Confidence            4589999997 99999999998874 5  9999999862  2333332221            012333   233 3578


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEE-EEeeCCCCcchHH
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIV-NMISNPVNSTVPI  154 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~i-iv~tNP~d~~t~~  154 (358)
                      ++||++|++.+.|.+.+.+      ....-+..-.+.|.++.+ +.++ +--|-|.+....+
T Consensus        75 ~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~  130 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEE  130 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHH
Confidence            9999999999888644211      122233333344444433 3333 3346666655433

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=97.37  E-value=0.002  Score=62.64  Aligned_cols=175  Identities=15%  Similarity=0.101  Sum_probs=95.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccC--CCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALE--DSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~--~aDiVIi  102 (358)
                      |||.|+||+|++|+.++..|...+. ..++.+|.....+....+.+.....++....    +.+++.++++  +.|+||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999988774 2466677543111111111111011222111    1123344554  4799999


Q ss_pred             cCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhC-------CC-eEEEEeeCCCCcchHHH--HH--------HHHHh
Q 018314          103 PAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYC-------PN-AIVNMISNPVNSTVPIA--AE--------VFKKA  162 (358)
Q Consensus       103 ~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~-------p~-a~iiv~tNP~d~~t~~~--~~--------~~~~s  162 (358)
                      +|+....  ......+.+..|+.....+.+.+.++.       .. ..+|.+|-.. +.....  ..        ...+.
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~  158 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET  158 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence            9986421  112235678899999999999888752       11 2344333221 110000  00        00111


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      ..+.|...+|.+.....++-..+++..+++.-.++ ..++|.+.
T Consensus       159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~  202 (352)
T PRK10084        159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH  202 (352)
T ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence            11345567777765556666666777777655555 34778653

>PRK06194 hypothetical protein; Provisional

Probab=97.37  E-value=0.0031  Score=59.40  Aligned_cols=159  Identities=14%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      +++|.|+||+|++|+.++..|+..+.  +|+++|.+.  ......++....  .++..+. +-+|   +.+.++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  899999865  223333333211  1333222 1122   222233      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCC-----eEEEEeeCCCCcchHHHHHHH
Q 018314           96 -DSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPN-----AIVNMISNPVNSTVPIAAEVF  159 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~-----a~iiv~tNP~d~~t~~~~~~~  159 (358)
                       ..|+||..||.....   ..+..   ..+..|+.    ..+.+.+.+.+.+.+     +.+++++.....         
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---------  152 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---------  152 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence             469999999864321   12222   23444443    445555556655542     555655443321         


Q ss_pred             HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                        .+ .+..-.++.+......+...+++.++.....+++..+.
T Consensus       153 --~~-~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        153 --LA-PPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             --cC-CCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence              11 23333455543334455666677776655666655554

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.32  E-value=0.0052  Score=59.05  Aligned_cols=106  Identities=14%  Similarity=0.093  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcC-CCCccEEEEec----CCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHI-NTRSEVAGYMG----NDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~-~~~~~v~~~~~----~~d~~~al~~aDiVI  101 (358)
                      .++|.|+||+|++|++++..|...+.  +|+....+. .......+... ....+++...+    ..++.++++++|+||
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi   82 (322)
T PLN02986          5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF   82 (322)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence            46999999999999999999998887  777554443 21222222111 11123333221    123446678999999


Q ss_pred             EcCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314          102 IPAGVPRK-PGMTRDDLFNINAGIVKDLCSAIAKY  135 (358)
Q Consensus       102 i~ag~~~~-~g~~r~~~~~~N~~i~~~i~~~i~~~  135 (358)
                      ++|+.... ......+++..|+.....+.+.+++.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            99985321 11222345677888888888887765

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.29  E-value=0.0041  Score=60.70  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=90.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEEec----CCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV  100 (358)
                      ..+||.|+||+|++|++++..|...+.  +|++.+.+....  ...++..   ..+++....    ..++.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            457999999999999999999998886  888887654211  1112211   123333221    12234567889999


Q ss_pred             EEcCCCCCCC---C-CCHH-----HHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch--------HHHHHH----H
Q 018314          101 IIPAGVPRKP---G-MTRD-----DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV--------PIAAEV----F  159 (358)
Q Consensus       101 Ii~ag~~~~~---g-~~r~-----~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t--------~~~~~~----~  159 (358)
                      |++|+.....   . .+-.     ..+..|+.....+.+.+.++..-..+|.+|.-.-...        ....+-    .
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864211   1 1112     2333445667777777776532224454443110000        000000    0


Q ss_pred             HHh-CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          160 KKA-GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       160 ~~s-g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      ... ...++...+|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence            000 00112235666655555665666777676554444 3466754

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0018  Score=62.79  Aligned_cols=112  Identities=15%  Similarity=0.175  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEecCCc--H--------HH--HHH----hhcCC---------CCccEEEEecCCcccccc
Q 018314           40 IGQPLALLMKLNPLVSRLALYDIANT--P--------GV--AAD----VGHIN---------TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        40 vG~~~a~~l~~~~~~~ei~L~D~~~~--~--------~~--~~d----l~~~~---------~~~~v~~~~~~~d~~~al   94 (358)
                      ||..+|..++..|+  +|+|||+++.  .        +.  ..+    +....         ...+++..+ +.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence            57889999999998  9999999861  1        11  001    11000         123666542 22456789


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ++||+||.+.              .++.++.+++...+.+.+ |++++  .||...+...-++   ...  -.|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la---~~~--~~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQ---RHV--AHPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHH---hhc--CCcccEEEE
Confidence            9999999986              588999999999999998 45533  8888876543332   222  246788887


Q ss_pred             cc
Q 018314          174 TT  175 (358)
Q Consensus       174 t~  175 (358)
                      ..
T Consensus       137 Hf  138 (314)
T PRK08269        137 HW  138 (314)
T ss_pred             ec
Confidence            53

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=97.27  E-value=0.0026  Score=61.31  Aligned_cols=113  Identities=19%  Similarity=0.112  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC--CCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE--DSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~--~aDiV  100 (358)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  .......+.+.. ..++.... +-.|   +.++++  ++|+|
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   77 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV   77 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence            6899999999999999999998886  899888643  111111122111 01111111 1122   223344  68999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |++|+.....  .....+.+..|+.....+.+.+++.... .++.+|
T Consensus        78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            9998764321  1234567889999999999988877533 344443

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.26  E-value=0.0016  Score=61.01  Aligned_cols=99  Identities=19%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKP  110 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~  110 (358)
                      |.|+||+|++|++++..|...+.  +|+.++++......  +...    .+....+ .+..++++++|+||++|+.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGAN--TKWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCc--ccce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998886  89999986521100  0000    0111111 12346789999999999875432


Q ss_pred             C-C---CHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          111 G-M---TRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       111 g-~---~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      + .   ...++...|+...+.+.+.+++....
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2 1   23456678999999999999988643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PLN02572 UDP-sulfoquinovose synthase

Probab=97.24  E-value=0.0034  Score=63.66  Aligned_cols=177  Identities=16%  Similarity=0.177  Sum_probs=98.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c-HH------------HHHHh---hcCCCCccEEEEec-
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PG------------VAADV---GHINTRSEVAGYMG-   86 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~------------~~~dl---~~~~~~~~v~~~~~-   86 (358)
                      -+++||.|+||+|++|++++..|+..+.  +|+++|...  . ..            ....+   .+.. ..+++...+ 
T Consensus        45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~D  121 (442)
T PLN02572         45 SKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGD  121 (442)
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECC
Confidence            3457899999999999999999999886  899988421  0 00            00011   0000 012222211 


Q ss_pred             ---CCccccccC--CCCEEEEcCCCCCCC-C-CCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEee------CCCCc
Q 018314           87 ---NDQLGQALE--DSDVVIIPAGVPRKP-G-MTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMIS------NPVNS  150 (358)
Q Consensus        87 ---~~d~~~al~--~aDiVIi~ag~~~~~-g-~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t------NP~d~  150 (358)
                         ..++.++++  +.|+||++|+....+ . .+.   ...+..|+.....+.+.+++++....++.++      +|...
T Consensus       122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~  201 (442)
T PLN02572        122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID  201 (442)
T ss_pred             CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCC
Confidence               122334455  479999998653211 1 111   2345679999999999999887654444332      22111


Q ss_pred             chHH-HHH--HH-HHh-C-CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          151 TVPI-AAE--VF-KKA-G-TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       151 ~t~~-~~~--~~-~~s-g-~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      +..- +.+  .. ..+ + ...|...+|.+.+....+....++..|++.--++ ..++|.+.
T Consensus       202 ~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~  263 (442)
T PLN02572        202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT  263 (442)
T ss_pred             CcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence            1000 000  00 000 0 0234567888765555666667777787766565 45778653

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.21  E-value=0.0023  Score=61.49  Aligned_cols=95  Identities=20%  Similarity=0.227  Sum_probs=59.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+|||. |.+|.+++..|...++  +|.+||+++..  ...+.....    .......++.+.++++|+|+++.  |.
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~v--p~   69 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMV--PH   69 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEc--Cc
Confidence            58999997 9999999999999887  89999987532  222322111    11111123334567899999984  11


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                                   - .++++++.+.... ++.++|..+|..
T Consensus        70 -------------~-~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        70 -------------G-IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             -------------h-HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                         1 3444444555544 566777777764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PLN02583 cinnamoyl-CoA reductase

Probab=97.20  E-value=0.009  Score=57.01  Aligned_cols=105  Identities=11%  Similarity=0.068  Sum_probs=68.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH----HHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (358)
                      .++|.|+||+|++|++++..|...++  +|++.+.+...    ....++....  .+++...    +.+++.+++.++|.
T Consensus         6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~~~~~l~~~d~   81 (297)
T PLN02583          6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCEE--ERLKVFDVDPLDYHSILDALKGCSG   81 (297)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccCC--CceEEEEecCCCHHHHHHHHcCCCE
Confidence            45899999999999999999999887  88888764311    1112221111  1233221    11334568899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      |+..++.+........+.+..|+.-...+.+.+.+..
T Consensus        82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~  118 (297)
T PLN02583         82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD  118 (297)
T ss_pred             EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9887654332211234678889999999999887763

>PRK07680 late competence protein ComER; Validated

Probab=97.19  E-value=0.0028  Score=60.00  Aligned_cols=97  Identities=14%  Similarity=0.190  Sum_probs=61.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+|||+ |.+|..++..|...+.  ..+|.++|++...  ...+.+..  ..+...   .+..+.+.++|+||++.- 
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~~--~g~~~~---~~~~~~~~~aDiVilav~-   71 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKERY--PGIHVA---KTIEEVISQSDLIFICVK-   71 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHHc--CCeEEE---CCHHHHHHhCCEEEEecC-
Confidence            58999997 9999999999888773  2479999986522  12222211  123332   234566899999999861 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d  149 (358)
                                     -..+.++.+.+..+ .++.+++.++|++.
T Consensus        72 ---------------p~~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         72 ---------------PLDIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             ---------------HHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                           11133344444444 35678888888774

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.19  E-value=0.003  Score=62.67  Aligned_cols=75  Identities=25%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||.|||| |+||+.++..|++++. .+|++-|+.. ....+.+..+... ...+... +...+.+.+++.|+||.++.
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~-d~~al~~li~~~d~VIn~~p   77 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAA-DVDALVALIKDFDLVINAAP   77 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEeccc-ChHHHHHHHhcCCEEEEeCC
Confidence            579999998 9999999999999885 6999999874 2223322221111 0112211 12345688999999999874

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.19  E-value=0.0029  Score=60.95  Aligned_cols=68  Identities=22%  Similarity=0.254  Sum_probs=47.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+||+|||+ |.+|..++..|...+...+|.+||+++. ...+.+   ...  ....   ..++.+++++||+||++.
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g~--~~~~---~~~~~~~~~~aDvViiav   74 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LGL--GDRV---TTSAAEAVKGADLVILCV   74 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CCC--Ccee---cCCHHHHhcCCCEEEECC
Confidence            368999997 9999999999998876558999998752 122221   111  1111   123456789999999986

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.17  E-value=0.0049  Score=61.48  Aligned_cols=117  Identities=18%  Similarity=0.108  Sum_probs=71.0

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH----HHHHhhcCCCCccEEEEe----cCCcccc
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYM----GNDQLGQ   92 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~----~~~dl~~~~~~~~v~~~~----~~~d~~~   92 (358)
                      |.+...+.+||.|+||+|.+|+.++..|...+.  +|++++.+....    ...++....  ..++...    +.+++.+
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~~~l~~  128 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKEL--PGAEVVFGDVTDADSLRK  128 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhc--CCceEEEeeCCCHHHHHH
Confidence            555566788999999999999999999998887  899998764210    011111111  1122211    1123444


Q ss_pred             ccC----CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           93 ALE----DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        93 al~----~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +++    ++|+||.+++.+....   .+....|......+.+.+++.+-. .++.+|
T Consensus       129 ~~~~~~~~~D~Vi~~aa~~~~~~---~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        129 VLFSEGDPVDVVVSCLASRTGGV---KDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             HHHHhCCCCcEEEECCccCCCCC---ccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            555    5899999876432111   123456777777888888776543 344444

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=97.17  E-value=0.0025  Score=60.35  Aligned_cols=166  Identities=16%  Similarity=0.106  Sum_probs=95.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-CccEEEEecCCccccccCCC-CEEEEcCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-RSEVAGYMGNDQLGQALEDS-DVVIIPAGVP  107 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~a-DiVIi~ag~~  107 (358)
                      +|.|+||+|++|++++..|...++  +|+.+|.........+ .+... ...+.-   .....+.+++. |.||++|+..
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~~~~d~~~---~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEFVVLDLTD---RDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccceeeecccc---hHHHHHHHhcCCCEEEEccccC
Confidence            499999999999999999999887  9999997552111111 11110 001110   01223455666 9999999876


Q ss_pred             CCCCCCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch-H----HHHHHHHHhCCCCCCceEeeccccHH
Q 018314          108 RKPGMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-P----IAAEVFKKAGTYNEKKLFGVTTLDVV  179 (358)
Q Consensus       108 ~~~g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t-~----~~~~~~~~sg~~~~~kviG~t~lds~  179 (358)
                      ..++..+   .++...|+...+.+.+..++.. -..++. +......- .    .+.+-.  .. ..|...+|.+.+...
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~-~ss~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E  150 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVF-ASSVSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE  150 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEE-eCCCceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence            5444332   3588999999999999999832 223333 33322111 0    010000  11 222224566655455


Q ss_pred             HHHHHHHHHcCCCCCCCce-EEEeecCC
Q 018314          180 RAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (358)
                      +.-...++..+++..-++. .++|.+..
T Consensus       151 ~~~~~~~~~~~~~~~ilR~~~vyGp~~~  178 (314)
T COG0451         151 QLLRAYARLYGLPVVILRPFNVYGPGDK  178 (314)
T ss_pred             HHHHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence            5545555555677766764 57776543

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.17  E-value=0.0023  Score=60.08  Aligned_cols=96  Identities=15%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ++||+|||+ |.+|..++..+...+. ..++.++|.++..  ...+.+..   .+...   .+..+.+.++|+||++.- 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRAA---TDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCeec---CChHHHHhcCCEEEEEcC-
Confidence            578999998 9999999998887762 2478999987522  12222211   12221   233566789999999851 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                     -..++++.+.+..+. +..++.++|-..
T Consensus        72 ---------------~~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---------------PQVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---------------HHHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence                           122344444444443 456777777653

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.13  E-value=0.0066  Score=64.68  Aligned_cols=178  Identities=13%  Similarity=0.014  Sum_probs=93.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc---ccccc--CCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ---LGQAL--EDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al--~~aDiV  100 (358)
                      +++||.|+||+|++|++++..|...+...+|+.+|..........+.......+++...+ -.|   +...+  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            457999999999999999999988754448999987431111111111100113333221 112   11122  689999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH-H--HHHhCCCCCCceEeecc
Q 018314          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE-V--FKKAGTYNEKKLFGVTT  175 (358)
Q Consensus       101 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~-~--~~~sg~~~~~kviG~t~  175 (358)
                      |++|+......  ....++...|+.-...+.+.+++.+.-..+|.+|.- .+....... .  ........|...+|.+.
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~-~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK  163 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTD-EVYGETDEDADVGNHEASQLLPTNPYSATK  163 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcch-HHhCCCccccccCccccCCCCCCCCcHHHH
Confidence            99998643211  123456788999999999998887632345544431 000000000 0  00000022334455554


Q ss_pred             ccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      +...++-...++..+++..-++ ..++|.+.
T Consensus       164 ~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~  194 (668)
T PLN02260        164 AGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ  194 (668)
T ss_pred             HHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence            4444444445555666554444 34667553

>PLN02240 UDP-glucose 4-epimerase

Probab=97.13  E-value=0.0077  Score=58.39  Aligned_cols=116  Identities=19%  Similarity=0.155  Sum_probs=70.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC--CCccEEEEe-c---CCccccccC--C
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYM-G---NDQLGQALE--D   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~-~---~~d~~~al~--~   96 (358)
                      .++||.|+||+|++|++++..|...+.  +|+++|...  .......+.+..  ...+++... +   ..++.++++  +
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~   81 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR   81 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence            346999999999999999999998886  899998643  111111121110  011222221 1   122223333  6


Q ss_pred             CCEEEEcCCCCCC-CC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           97 SDVVIIPAGVPRK-PG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        97 aDiVIi~ag~~~~-~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .|+||++|+.... .. ......+..|+.....+++.+++..... ++.+|
T Consensus        82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S  131 (352)
T PLN02240         82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS  131 (352)
T ss_pred             CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            8999999986421 11 2345678899999999999888765443 44444

>PF11975 Glyco_hydro_4C: Family 4 glycosyl hydrolase C-terminal domain; InterPro: IPR022616 This domain is found primarily in bacterial family 4 glycosyl hydrolases

Probab=97.12  E-value=0.0033  Score=58.20  Aligned_cols=77  Identities=12%  Similarity=0.154  Sum_probs=51.6

Q ss_pred             CCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--H
Q 018314          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--K  322 (358)
Q Consensus       249 g~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~  322 (358)
                      ++..++     ..++.+|.++.+   .++.+++ ++|.+   |+|.++++||+|+++|++++.. ++|++...++++  +
T Consensus       134 ~~~~~a-----~~~i~~i~~~~~---~~~~vNv~N~G~I~nLp~davVEvp~~v~~~Gi~P~~~-g~lP~~~~~li~~~~  204 (232)
T PF11975_consen  134 GSGEYA-----EAAIEAIYNDKP---KRFVVNVPNNGAIPNLPDDAVVEVPCYVDGDGIHPVAV-GPLPPAIAGLIQQVK  204 (232)
T ss_dssp             TTSCHH-----HHHHHHHHHSSE---EEEEEEEE-TTSSTTS-TTSEEEEEEEEETTEEEEB-S-B---HHHHHHHHHHH
T ss_pred             cccchH-----HHHHHHHhcCCC---eEEEEECCCCCccCCCCCCcEEEEEEEEcCCeeEeccC-CCCCHHHHHHHHHHH
Confidence            455555     344555666643   3555554 46654   8899999999999999999654 499999999888  8


Q ss_pred             HHHHHHHHhhhh
Q 018314          323 LNPTFHIRKLFQ  334 (358)
Q Consensus       323 s~~~L~~~~~~~  334 (358)
                      +++.|.+++...
T Consensus       205 ~~e~L~veAa~~  216 (232)
T PF11975_consen  205 AYERLTVEAALE  216 (232)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888776654

It is found in the C terminus. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1UP4_A 1UP6_C 1UP7_E 1VJT_A 1U8X_X 1S6Y_A 3FEF_D 1OBB_A.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.11  E-value=0.0021  Score=61.48  Aligned_cols=75  Identities=23%  Similarity=0.371  Sum_probs=52.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc-
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP-  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~-  103 (358)
                      +..||.|+|| |.+|.++++.|+..+. .+|.++|++.  ++..+.++.+...  .+.... .+++.+.++++|+||.+ 
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~~-~~~~~~~~~~aDiVInaT  200 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARATA-GSDLAAALAAADGLVHAT  200 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEEe-ccchHhhhCCCCEEEECC
Confidence            3468999998 9999999999998874 5899999976  3445555544321  122221 23345578999999997 


Q ss_pred             -CCC
Q 018314          104 -AGV  106 (358)
Q Consensus       104 -ag~  106 (358)
                       +|.
T Consensus       201 p~Gm  204 (284)
T PRK12549        201 PTGM  204 (284)
T ss_pred             cCCC
Confidence             454

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.11  E-value=0.0046  Score=57.18  Aligned_cols=70  Identities=10%  Similarity=0.194  Sum_probs=45.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.+||+|||+ |.+|.+++..+...+.  ..+++.++.+.. ....++.+..   .+..+   .|..+.++++|+||++.
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~~---~~~~~~~~~~DiViiav   74 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVSTT---TDWKQHVTSVDTIVLAM   74 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEEe---CChHHHHhcCCEEEEec
Confidence            3579999997 9999999998877652  345777876421 1122232211   12322   34567789999999985

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.09  E-value=0.0035  Score=64.05  Aligned_cols=98  Identities=15%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccC---CCCEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALE---DSDVVII  102 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~---~aDiVIi  102 (358)
                      +.+|+|||. |.+|.++|..|+..++  +|.+||+++..  +.++....  ....+..   .+++.+.++   ++|+|++
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEE
Confidence            358999997 9999999999999998  89999987522  22222210  0112333   244555554   5898888


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~  148 (358)
                      ..               -+-+.++++.+.+..+ .|+.++|..+|-.
T Consensus        73 ~v---------------~~~~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         73 LI---------------KAGEAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             Ee---------------CChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            74               1123344444444443 4677888887754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.09  E-value=0.0025  Score=60.50  Aligned_cols=64  Identities=23%  Similarity=0.249  Sum_probs=44.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|..++..|...++  +|..||.++. ...+.+.   .   .+...  +++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g---~~~~~--~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---G---LVDEA--STDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---C---Ccccc--cCCH-hHhcCCCEEEEcC
Confidence            58999997 9999999999998886  8999998752 1222221   1   11111  1233 5689999999985

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.07  E-value=0.0032  Score=59.10  Aligned_cols=66  Identities=20%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEE-ecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALY-DIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~-D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||. |.+|..++..|...++  ..+|+.+ |+++..  ...+.+..    +...   .+..+++++||+||++.
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~g----~~~~---~~~~e~~~~aDvVil~v   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSLG----VKTA---ASNTEVVKSSDVIILAV   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHcC----CEEe---CChHHHHhcCCEEEEEE
Confidence            68999997 9999999999988774  4578888 765422  22233211    2222   23456788999999986

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=97.01  E-value=0.0071  Score=58.72  Aligned_cols=154  Identities=8%  Similarity=-0.005  Sum_probs=86.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhc-C--CCCccEEEEe-cCC---ccccccCC--
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGH-I--NTRSEVAGYM-GND---QLGQALED--   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~-~--~~~~~v~~~~-~~~---d~~~al~~--   96 (358)
                      ++|.|+||+|++|++++..|...+.  +|+++|.+..   ......+.. .  .....++... +-.   ++.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            4899999999999999999998887  8999997642   111111110 0  0011222221 112   23345564  


Q ss_pred             CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhC-CC-eEEEEeeC------CCCc-chHHHHHHHHHhCCC
Q 018314           97 SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYC-PN-AIVNMISN------PVNS-TVPIAAEVFKKAGTY  165 (358)
Q Consensus        97 aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~-p~-a~iiv~tN------P~d~-~t~~~~~~~~~sg~~  165 (358)
                      .|+||++|+..... . ......+..|+.-...+.+.+.+.+ .+ ..++.+|.      +.+. .+       .... +
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~-------E~~~-~  150 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQN-------ETTP-F  150 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCC-------CCCC-C
Confidence            59999999864321 1 1123444567777788888888765 22 24443322      2111 11       1112 4


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCC
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVN  192 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~  192 (358)
                      .|...+|.+.....++...+++..+++
T Consensus       151 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~  177 (343)
T TIGR01472       151 YPRSPYAAAKLYAHWITVNYREAYGLF  177 (343)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCc
Confidence            455666776555666666667766664

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.012  Score=62.22  Aligned_cols=110  Identities=13%  Similarity=0.062  Sum_probs=67.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Cc--------cccccCCCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ--------LGQALEDSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d--------~~~al~~aDi   99 (358)
                      |||.|+||+|++|++++..|.......+|+.++.+.......++.......+++...+. .|        ..+.++++|+
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~   80 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH   80 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence            58999999999999999999853223489999986522222222111000123332110 11        0123489999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (358)
                      ||++|+... ...+..+....|+.-.+.+.+.+++...+.
T Consensus        81 Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~  119 (657)
T PRK07201         81 VVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAAT  119 (657)
T ss_pred             EEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCe
Confidence            999998532 223445667789999999999888765333

>PLN02253 xanthoxin dehydrogenase

Probab=96.97  E-value=0.019  Score=53.83  Aligned_cols=153  Identities=15%  Similarity=0.249  Sum_probs=82.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|.++.  .....++..   ..++..+. +-.|   ..+++      
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~   91 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK   91 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998886  8999998652  222223321   11222221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC-----CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 -EDSDVVIIPAGVPRKP-----GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~-----g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                       ...|++|..||.....     ..+.   ...+..|..-    ++.+.+.+.+. ..+.+++++.....           
T Consensus        92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~-----------  159 (280)
T PLN02253         92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA-----------  159 (280)
T ss_pred             hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------
Confidence             3689999999864321     1222   2345555443    34444444432 34556656543321           


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP  199 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~  199 (358)
                      .+ .+....+|.+......+-+.+++.++  +..+++.
T Consensus       160 ~~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~  194 (280)
T PLN02253        160 IG-GLGPHAYTGSKHAVLGLTRSVAAELG--KHGIRVN  194 (280)
T ss_pred             cc-CCCCcccHHHHHHHHHHHHHHHHHhh--hcCeEEE
Confidence            11 22223455543334456667777764  3345443

>PRK06545 prephenate dehydrogenase; Validated

Probab=96.96  E-value=0.0043  Score=61.20  Aligned_cols=68  Identities=21%  Similarity=0.292  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||+ |.||.+++..|...++  ++.++|.+..............   +..  .++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~~--~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---IDE--LAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Ccc--cccCHHHHhcCCCEEEEeC
Confidence            37999997 9999999999999887  7788888763222111111111   111  1245567889999999986

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.96  E-value=0.0014  Score=54.24  Aligned_cols=72  Identities=24%  Similarity=0.304  Sum_probs=46.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--CCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ||+|+||+|.+|..++..|...+.+.-+.+++.....++...-.+  ......+....  .+ .+.+.++|+||.+.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            799999999999999999999887767777777652332221111  11112333321  23 35689999999985

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=96.95  E-value=0.0038  Score=59.66  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~  106 (358)
                      |||.|+||+|++|++++..|...+   +++.+|.... ....|+.+            ...+.+.++  +.|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999888776   4777776421 00011111            112334455  58999999875


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ....  ..........|+.....+++..++.+.  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            3211  122344457899999999999988753  444433

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.94  E-value=0.015  Score=54.86  Aligned_cols=120  Identities=16%  Similarity=0.178  Sum_probs=76.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe----cCCccc-------c
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQLG-------Q   92 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~-------~   92 (358)
                      .+++.+.|+||++++|..+|..|+.++.  .|+|+.+++  +...+.++.+... ..+....    ..++++       +
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~~-v~v~vi~~DLs~~~~~~~l~~~l~~   80 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKTG-VEVEVIPADLSDPEALERLEDELKE   80 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhhC-ceEEEEECcCCChhHHHHHHHHHHh
Confidence            3456899999999999999999999998  999999987  5666777775431 1222211    111111       1


Q ss_pred             ccCCCCEEEEcCCCCCC-----CC-CCHHHHHHHHHHHHHH----HHHHHHhhCCCeEEEEeeCCCC
Q 018314           93 ALEDSDVVIIPAGVPRK-----PG-MTRDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~-----~g-~~r~~~~~~N~~i~~~----i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      ..-..|+.|..||...-     .. .+-.+++.-|+--...    +.+.|.+.. .+.||+++.-..
T Consensus        81 ~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S~ag  146 (265)
T COG0300          81 RGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGSAAG  146 (265)
T ss_pred             cCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechhh
Confidence            22368999999986431     12 2235677777655544    445555433 456777765543

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=96.94  E-value=0.0032  Score=53.31  Aligned_cols=74  Identities=19%  Similarity=0.321  Sum_probs=51.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +..++.|+|| |.+|..++..|...+. .+|.+++++..  ...+..+    ....++... .+++.+.+.++|+||.+.
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~----~~~~~~~~~-~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEALAEEF----GGVNIEAIP-LEDLEEALQEADIVINAT   83 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHH----TGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHc----Cccccceee-HHHHHHHHhhCCeEEEec
Confidence            4569999998 9999999999999874 57999998652  2333333    112344432 356667889999999986


Q ss_pred             CCC
Q 018314          105 GVP  107 (358)
Q Consensus       105 g~~  107 (358)
                      +.+
T Consensus        84 ~~~   86 (135)
T PF01488_consen   84 PSG   86 (135)
T ss_dssp             STT
T ss_pred             CCC
Confidence            554

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK08655 prephenate dehydrogenase; Provisional

Probab=96.93  E-value=0.0051  Score=62.38  Aligned_cols=64  Identities=25%  Similarity=0.398  Sum_probs=46.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+||||.|.+|..++..|...+.  +|.++|.++..  ..+.++       .+..   ++++.+++.+||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~~~a~~~-------gv~~---~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGKEVAKEL-------GVEY---ANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHc-------CCee---ccCHHHHhccCCEEEEec
Confidence            5899998559999999999998886  89999987522  122211       1222   234567789999999985

>PRK08643 acetoin reductase; Validated

Probab=96.90  E-value=0.051  Score=50.04  Aligned_cols=116  Identities=22%  Similarity=0.295  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|.+..  .....++.+..  .++..+. +-+|   +.+       .+.
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999998886  8999998652  22233343221  1222211 1111   111       124


Q ss_pred             CCCEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +.|+||+++|... .+  ..+.   ...+..|+.    +.+.+.+.+.+..+++.+++++...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  141 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA  141 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence            6899999998642 22  1111   223445543    3445555555544556777666543

>PRK14982 acyl-ACP reductase; Provisional

Probab=96.90  E-value=0.0053  Score=60.04  Aligned_cols=98  Identities=23%  Similarity=0.322  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.++|.|+||+|.+|+.++..|....-..+|++++.++  ....+.++.+.    .+      .++.+++.++|+||.++
T Consensus       154 ~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~----~i------~~l~~~l~~aDiVv~~t  223 (340)
T PRK14982        154 SKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGG----KI------LSLEEALPEADIVVWVA  223 (340)
T ss_pred             CCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccc----cH------HhHHHHHccCCEEEECC
Confidence            34589999998999999999997643245899999764  22222222211    11      23567899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t  152 (358)
                      +.+...-.+..++                  .+..+++=++.|=|+-.
T Consensus       224 s~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        224 SMPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             cCCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence            8765321222111                  35567777888877654

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.90  E-value=0.004  Score=61.84  Aligned_cols=60  Identities=20%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      |-+.....+||+|||+.|.+|..++..|...++  +|.+||.+..                      ++..+++++||+|
T Consensus        91 ~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlV  146 (374)
T PRK11199         91 FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMV  146 (374)
T ss_pred             ccccCcccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEE
Confidence            433344567999999559999999999999887  8999997421                      1124568899999


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      |++.
T Consensus       147 ilav  150 (374)
T PRK11199        147 IVSV  150 (374)
T ss_pred             EEeC
Confidence            9986

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=96.90  E-value=0.0027  Score=53.35  Aligned_cols=103  Identities=19%  Similarity=0.273  Sum_probs=56.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +...+||+|||| |.||.+++..|...++  +|.-+-.+. ..-+.++.+...  ....    .++.+.+.+||+++++.
T Consensus         7 ~~~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~--~~~~----~~~~~~~~~aDlv~iav   76 (127)
T PF10727_consen    7 QAARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIG--AGAI----LDLEEILRDADLVFIAV   76 (127)
T ss_dssp             -----EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--T--T---------TTGGGCC-SEEEE-S
T ss_pred             CCCccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-cccccccccccc--cccc----cccccccccCCEEEEEe
Confidence            446789999998 9999999999999887  665554332 222233333221  2222    23457789999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh--C-CCeEEEEe---eCCCCcchHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY--C-PNAIVNMI---SNPVNSTVPI  154 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~-p~a~iiv~---tNP~d~~t~~  154 (358)
                      .     +           ..+.++++.|..+  . |+. +++=   +-+++++.++
T Consensus        77 p-----D-----------daI~~va~~La~~~~~~~g~-iVvHtSGa~~~~vL~p~  115 (127)
T PF10727_consen   77 P-----D-----------DAIAEVAEQLAQYGAWRPGQ-IVVHTSGALGSDVLAPA  115 (127)
T ss_dssp             ------C-----------CHHHHHHHHHHCC--S-TT--EEEES-SS--GGGGHHH
T ss_pred             c-----h-----------HHHHHHHHHHHHhccCCCCc-EEEECCCCChHHhhhhH
Confidence            1     1           1456777788776  2 444 4433   4456667653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.89  E-value=0.0088  Score=56.83  Aligned_cols=100  Identities=17%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||+|||+ |.+|.+++..|...+.  ..+|+++|.+... ....+....  ..+...   .|..+.++++|+||++.-
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~~--~~~~~~---~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDKY--PTVELA---DNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHHc--CCeEEe---CCHHHHHhhCCEEEEecC
Confidence            468999997 9999999999888762  2489999986421 122222111  122322   334567899999998852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                                      ...++++++.+..+- ++..+|.+.|-+++
T Consensus        74 ----------------p~~~~~vl~~l~~~l~~~~~ivS~~aGi~~  103 (277)
T PRK06928         74 ----------------PLAVLPLLKDCAPVLTPDRHVVSIAAGVSL  103 (277)
T ss_pred             ----------------HHHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence                            123445555555443 45566666666543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.88  E-value=0.0093  Score=52.78  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=29.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||.|+|+ |.+|+.++..|+..+. .+++|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999885 5899999874

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.85  E-value=0.0064  Score=55.10  Aligned_cols=36  Identities=28%  Similarity=0.533  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |.+|+.++..|+..|. .+|.|+|.+.
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            3458999998 9999999999999985 6999999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=96.84  E-value=0.0061  Score=57.30  Aligned_cols=95  Identities=20%  Similarity=0.244  Sum_probs=65.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCC--CEEEEcCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS--DVVIIPAGVP  107 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a--DiVIi~ag~~  107 (358)
                      ||.|+||+|++|++++..|...+.  +|+.++...     .|+.+            .+++.++++++  |+||++++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999988886  888888641     12211            12234556655  9999999864


Q ss_pred             CCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          108 RKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       108 ~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...  .......+..|......+++.+.+...  .+|.+|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            322  123455678889889999998887653  344444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=96.83  E-value=0.0084  Score=57.15  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc-cccc-----cCCCCEEEEcC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ-LGQA-----LEDSDVVIIPA  104 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d-~~~a-----l~~aDiVIi~a  104 (358)
                      |.|+||+|++|++++..|...+. ..+.++|..........+.+... .+...   ..+ +.+.     +.++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998874 35677786542111111111110 00000   011 1112     23799999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                      +.+..........+..|+.....+.+.+++.+.
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~  109 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI  109 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            754333334455678899999999999888653

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=96.83  E-value=0.01  Score=57.56  Aligned_cols=109  Identities=14%  Similarity=0.034  Sum_probs=66.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcC--CCCccEEEEe-c---CCccccccCC-
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI--NTRSEVAGYM-G---NDQLGQALED-   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~--~~~~~v~~~~-~---~~d~~~al~~-   96 (358)
                      +.++|.|+||+|++|++++..|+..+.  +|+++|.++.   ......+...  ....+++... +   ..++.+++++ 
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   82 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI   82 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence            356899999999999999999999887  8999887541   1111112110  0011222221 1   1223344554 


Q ss_pred             -CCEEEEcCCCCCCC-C-CCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314           97 -SDVVIIPAGVPRKP-G-MTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus        97 -aDiVIi~ag~~~~~-g-~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                       .|+||++|+..... . ......+..|+.-...+.+.+.++..
T Consensus        83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence             59999999864321 1 12234456788888888888888764

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.83  E-value=0.0074  Score=55.68  Aligned_cols=114  Identities=19%  Similarity=0.284  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (358)
                      .+++.|+||+|.+|+.++..|+..+.  +|++.+.++  ......++.+..  .++.... +-+|.   .++       .
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999876  222233343322  1232221 11121   112       2


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEee
Q 018314           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .+.|+||.++|.... +  ..+   -.+.+..|..-    .+.+.+.+.+..+.+.+++++
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s  143 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG  143 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence            348999999986421 1  111   22344456554    666666663334445555554

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.82  E-value=0.0057  Score=58.37  Aligned_cols=64  Identities=22%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||. |.+|..++..+...++  +|..||+++....  .+....    +..   .+++.+.+++||+||++.
T Consensus         3 ~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~--~~~~~g----~~~---~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          3 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVA--EVIAAG----AET---ASTAKAVAEQCDVIITML   66 (296)
T ss_pred             ceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999997 9999999999998886  8999998752211  122111    122   234567789999999985

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.82  E-value=0.026  Score=52.09  Aligned_cols=116  Identities=18%  Similarity=0.199  Sum_probs=66.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.++.  .....++.+..  .++..+. +-+|   +.+.       +
T Consensus        10 ~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523         10 GRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            45899999999999999999998887  8999998752  22222333221  1222221 1111   1122       2


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP  147 (358)
                      ...|+||..+|.... +  ..+   -.+.+..|+.-...+.+.+.++.   ..+.++++|..
T Consensus        86 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~  147 (255)
T PRK07523         86 GPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV  147 (255)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence            357999999986431 1  112   23345566654444444444332   34566666654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.82  E-value=0.0039  Score=59.43  Aligned_cols=63  Identities=21%  Similarity=0.319  Sum_probs=45.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ||+|||. |.+|..++..|+..++  +|..||++...  ...+.+...    ..   .++..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~----~~---~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEV--ADELLAAGA----VT---AETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHCCC----cc---cCCHHHHHhcCCEEEEec
Confidence            6999997 9999999999998887  89999987522  222332221    11   124467889999999985

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.81  E-value=0.029  Score=51.27  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CC---ccccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a-------   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++++.+..  .....++.+ .  .++..+.. -.   ++...       
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~--~~~~~~~~D~~~~~~~~~~~~~~~~~   78 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEEAAERVAAEILA-G--GRAIAVAADVSDEADVEAAVAAALER   78 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-C--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            456999999999999999999998887  8999998762  222233332 1  12222211 11   11122       


Q ss_pred             cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...|+||.++|.....    ..+   -.+.+..|..    +.+.+.+.+.+... +.+++++.
T Consensus        79 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~~sS  141 (251)
T PRK07231         79 FGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGG-GAIVNVAS  141 (251)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-cEEEEEcC
Confidence            23579999999863211    112   1234455554    44555555544333 34554544

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=96.81  E-value=0.0089  Score=57.06  Aligned_cols=65  Identities=22%  Similarity=0.280  Sum_probs=48.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||++||- |.||+.++..|...++  +++.||++..+. +..+.....  .  .   ..++.++.++||+||...
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga--~--~---a~s~~eaa~~aDvVitmv   65 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA--T--V---AASPAEAAAEADVVITML   65 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC--c--c---cCCHHHHHHhCCEEEEec
Confidence            58999997 9999999999999998  999999876432 233333221  1  1   123468899999999985

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.011  Score=54.73  Aligned_cols=112  Identities=29%  Similarity=0.370  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEe----cCCcccccc--------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM----GNDQLGQAL--------   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~----~~~d~~~al--------   94 (358)
                      +++.|+||+|++|..++..|+..+.  +|+++|.+...  ....++..    .++..+.    ...++.+.+        
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~   75 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG   75 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999886  89999976521  11122221    1121111    111222222        


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSA----IAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tNP  147 (358)
                      ...|+||.+||.....   ..+   -...+..|..-...+.+.    +++ .+.+.+++++..
T Consensus        76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~~iv~isS~  137 (260)
T PRK08267         76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKA-TPGARVINTSSA  137 (260)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh-CCCCEEEEeCch
Confidence            3459999999875321   112   234456666644444444    433 344556655554

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=96.79  E-value=0.008  Score=59.14  Aligned_cols=119  Identities=18%  Similarity=0.203  Sum_probs=77.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVI  101 (358)
                      ++.++.|+||+|++|.+++..|..++...||.++|.... ...-.|.... ...+++...    +..++..|+.++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            456899999999999999999999886679999999762 1111111110 112333321    124567899999 666


Q ss_pred             EcCCCC-CCCCC-CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          102 IPAGVP-RKPGM-TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       102 i~ag~~-~~~g~-~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      +.+..+ ....+ .|......|+.-.+.+.+.+.+.+-+-  +++|....
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~--lIYtSs~~  128 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKR--LIYTSSAY  128 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCE--EEEecCce
Confidence            654332 22233 466777899999999999999886432  44544443

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.78  E-value=0.028  Score=54.12  Aligned_cols=117  Identities=16%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH--H--h--hcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--D--V--GHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~--d--l--~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      .|||+|+|+ |.||..++..|...+.  +|.|++..+.+-.+.  +  +  .+......+....  .+ .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~-~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ET-ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CC-cccccccCEEE
Confidence            469999998 9999999999998876  899999853111111  0  1  0001000111111  11 12356889999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ++...            ..+.    +..+.+..+ .+++.++.+-|=++....+.    +.   ++.+++++-
T Consensus        76 v~vK~------------~~~~----~al~~l~~~l~~~t~vv~lQNGv~~~e~l~----~~---~~~~~v~~g  125 (305)
T PRK05708         76 LACKA------------YDAE----PAVASLAHRLAPGAELLLLQNGLGSQDAVA----AR---VPHARCIFA  125 (305)
T ss_pred             EECCH------------HhHH----HHHHHHHhhCCCCCEEEEEeCCCCCHHHHH----Hh---CCCCcEEEE
Confidence            98621            1122    333444444 37888888999988765442    22   666777765

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.77  E-value=0.014  Score=55.50  Aligned_cols=69  Identities=14%  Similarity=0.225  Sum_probs=46.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .|||+|||+ |.+|.+++..|...+  ...+|+.+|++.. ....++....   .++..   .+..+.+++||+||++.
T Consensus         3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~~---~~~~e~~~~aDvVilav   73 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKGT---HNKKELLTDANILFLAM   73 (279)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceEe---CCHHHHHhcCCEEEEEe
Confidence            369999997 999999999998876  2348899987541 1222332211   12322   23456778999999985

>PRK06924 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.017  Score=53.03  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++|.|+||+|.+|+.++..|+..+.  +|++.+.++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999887  899999765

>PRK07069 short chain dehydrogenase; Validated

Probab=96.75  E-value=0.057  Score=49.39  Aligned_cols=116  Identities=22%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC-C--cHHHHHHhhcCCCCccEEEE-ecCCc---cc-------cccC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGY-MGNDQ---LG-------QALE   95 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~-~~~~d---~~-------~al~   95 (358)
                      ||.|+||+|.+|..++..|+..+.  +|++.|.+ .  ......++........+..+ .+-.|   +.       +.+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            589999999999999999998886  89999986 3  22223333322111111111 11112   11       1234


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|+||..+|.....   ..+.   ...+..|+.    ..+.+.+.+++... +.+++++...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~~  140 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSVA  140 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecChh
Confidence            679999999864321   1122   234556665    67788888876543 4555555443

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.72  E-value=0.0031  Score=60.80  Aligned_cols=95  Identities=17%  Similarity=0.107  Sum_probs=67.2

Q ss_pred             chhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCcc
Q 018314            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSE   80 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~   80 (358)
                      .+.+-.++|-|-.+.+.+++. + ....++|||+ |..|..-+..+.....+.+|.+||++.  ....+.++.+.. ..+
T Consensus        94 ~~~lT~~RTaA~salaa~~l~-~-da~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~  169 (301)
T PRK06407         94 ANRLGQIRTGAVTAYATSILH-K-NVENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVD  169 (301)
T ss_pred             cchHHHHHHHHHHHHHHHHhh-c-CCcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCc
Confidence            345666777777777777665 3 5679999997 999887777666655678999999986  344455555421 234


Q ss_pred             EEEEecCCccccccCCCCEEEEcC
Q 018314           81 VAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        81 v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +...   ++.++++++||+|+.+-
T Consensus       170 v~~~---~~~~eav~~aDIV~taT  190 (301)
T PRK06407        170 IRPV---DNAEAALRDADTITSIT  190 (301)
T ss_pred             EEEe---CCHHHHHhcCCEEEEec
Confidence            5543   45689999999999753

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.031  Score=52.64  Aligned_cols=115  Identities=20%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .+.+.|+||+|++|..++..|+..+.  +|++.|.++  ......++....  .++.... +-+|   +.+.       +
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34699999999999999999999887  899999875  222233343221  1222221 1111   1112       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ...|++|..||.....   ..+..   ..+..|.    .+.+.+.+.+.+....+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   22222   2344554    444555555555543456666654

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.023  Score=51.99  Aligned_cols=117  Identities=19%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---cccccc----CCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQAL----EDS   97 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al----~~a   97 (358)
                      |++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.... ..++.... +-.   ++.+.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            45899999999999999999998886  8999998762  22223333211 12333321 111   222222    235


Q ss_pred             CEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314           98 DVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (358)
Q Consensus        98 DiVIi~ag~~~~---~g~~r~---~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP  147 (358)
                      |+||.++|....   .+.+..   +.+..|..-...+.+.+.++   ...+.++++|-.
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            999998875321   123333   34556665555555444433   224556666543

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=96.70  E-value=0.0052  Score=51.77  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------------------HHHHHHhhcCCCCccEEEEec
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGVAADVGHINTRSEVAGYMG   86 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~~~dl~~~~~~~~v~~~~~   86 (358)
                      ..||+|+|+ |.+|+.++..|+..|. .++.|+|.+..                     +.....+.......+++.+..
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv-~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~   79 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGV-GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPE   79 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTT-SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEES
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCC-CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeec
Confidence            459999998 9999999999999886 69999998640                     011112222222345555421


Q ss_pred             C---CccccccCCCCEEEEcC
Q 018314           87 N---DQLGQALEDSDVVIIPA  104 (358)
Q Consensus        87 ~---~d~~~al~~aDiVIi~a  104 (358)
                      .   .+..+.++++|+||.+.
T Consensus        80 ~~~~~~~~~~~~~~d~vi~~~  100 (135)
T PF00899_consen   80 KIDEENIEELLKDYDIVIDCV  100 (135)
T ss_dssp             HCSHHHHHHHHHTSSEEEEES
T ss_pred             ccccccccccccCCCEEEEec
Confidence            1   22335678999998875

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=96.70  E-value=0.0063  Score=55.06  Aligned_cols=164  Identities=18%  Similarity=0.162  Sum_probs=91.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe----cCCccccccCCC--CEEEEc
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM----GNDQLGQALEDS--DVVIIP  103 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~a--DiVIi~  103 (358)
                      |.|+||+|.+|+.++..|...+.  +++-+.... .........      +++.+.    +..++.+.+++.  |.||.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~------~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~   72 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL------NVEFVIGDLTDKEQLEKLLEKANIDVVIHL   72 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT------TEEEEESETTSHHHHHHHHHHHTESEEEEE
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc------eEEEEEeeccccccccccccccCceEEEEe
Confidence            78999999999999999999987  555444443 222222111      111111    112345667777  999999


Q ss_pred             CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHH
Q 018314          104 AGVPR--KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA  181 (358)
Q Consensus       104 ag~~~--~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~  181 (358)
                      |+.+.  .....-.+....|+...+.+.+.+++.... .+|.++. ..+-........+....+.+...+|.+.....++
T Consensus        73 a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~  150 (236)
T PF01370_consen   73 AAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEEL  150 (236)
T ss_dssp             BSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHH
T ss_pred             ecccccccccccccccccccccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccc
Confidence            98653  111345677889999999999999999873 4444433 2111000000000000011222344443334455


Q ss_pred             HHHHHHHcCCCCCCCce-EEEeec
Q 018314          182 KTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                      ...+++..+++...++. .++|.+
T Consensus       151 ~~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  151 LRDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHHTSEEEEEEESEEESTT
T ss_pred             cccccccccccccccccccccccc
Confidence            55566666776666664 466665

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.70  E-value=0.0021  Score=62.23  Aligned_cols=92  Identities=20%  Similarity=0.238  Sum_probs=59.5

Q ss_pred             hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (358)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~   82 (358)
                      .|-.++|-|-.+.+.++++.+ ....++|||+ |..+..-+..+...-.+.+|.+||++.  .+..+.++.+ . ...+.
T Consensus       106 ~lT~~RTaA~sala~~~La~~-~~~~l~viGa-G~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~  181 (313)
T PF02423_consen  106 WLTALRTAAVSALAARYLARP-DARTLGVIGA-GVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD-L-GVPVV  181 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-T-T--EEEEE---SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-C-CTCEE
T ss_pred             chhhhHHHHHHHHHHHHhCcC-CCceEEEECC-CHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-c-cccce
Confidence            445566666666666777654 4568999997 988877766665533388999999986  4566667777 2 34565


Q ss_pred             EEecCCccccccCCCCEEEEc
Q 018314           83 GYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        83 ~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ..   +|.++++++||+|+.+
T Consensus       182 ~~---~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  182 AV---DSAEEAVRGADIIVTA  199 (313)
T ss_dssp             EE---SSHHHHHTTSSEEEE-
T ss_pred             ec---cchhhhcccCCEEEEc
Confidence            43   4678999999998875

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.69  E-value=0.06  Score=49.85  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=64.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (358)
                      |+|.|+||+|.+|..++..|+..+.  +|++.|+++.  .....++.+..   .+..+. +-+|   ..+       .+.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g   75 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG   75 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999887  8999998752  22233343211   122211 1111   111       234


Q ss_pred             CCCEEEEcCCCCC-CC----CCCHHHH---HHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPR-KP----GMTRDDL---FNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~-~~----g~~r~~~---~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .-|++|..+|... .+    ..+..++   +..|.    -+.+.+.+.+.+....+.||+++.-
T Consensus        76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~  139 (259)
T PRK08340         76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSV  139 (259)
T ss_pred             CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCc
Confidence            6899999998632 11    1222222   22232    2344555555433345667766544

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.68  E-value=0.011  Score=56.86  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC---CCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVIi~a  104 (358)
                      |||+|||. |.+|+.++..|...++  +|++||+++..  ..++.+..    +...   .++.+.++   ++|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~~---~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATGA---DSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Ceec---CCHHHHHhhcCCCCEEEEEe
Confidence            58999997 9999999999998887  89999987522  22222221    2221   22334444   469988874

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.68  E-value=0.014  Score=55.44  Aligned_cols=67  Identities=10%  Similarity=0.218  Sum_probs=46.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||+ |.||.+++..|...++  ..+|+.+|+++..  ...+.+..   .+...   ++..+.+++||+||++.
T Consensus         3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~--~~~l~~~~---g~~~~---~~~~e~~~~aDiIiLav   71 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSN--LKNASDKY---GITIT---TNNNEVANSADILILSI   71 (272)
T ss_pred             CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHH--HHHHHHhc---CcEEe---CCcHHHHhhCCEEEEEe
Confidence            48999997 9999999999988774  4579999976422  22232211   12222   23356679999999986

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=96.68  E-value=0.011  Score=56.19  Aligned_cols=109  Identities=14%  Similarity=0.107  Sum_probs=66.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccc----cCCCCEEEEcCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQA----LEDSDVVIIPAGV  106 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~a----l~~aDiVIi~ag~  106 (358)
                      |.|+||+|++|++++..|...+. .+|+++|..........+........+..   .+.++..    +.+.|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998874 26888886542111111111000001110   1111111    2589999999986


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +.....+.......|+.....+.+.+.+...  .+|.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322233455678899999999998887753  344444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.67  E-value=0.014  Score=53.41  Aligned_cols=34  Identities=32%  Similarity=0.584  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      ..||+|+|+ |.+|+.++..|+..++ .+|.|+|.+
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFD   61 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            458999998 9999999999999986 589999987

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.67  E-value=0.025  Score=53.91  Aligned_cols=118  Identities=19%  Similarity=0.358  Sum_probs=77.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec-----------CCcccc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-----------NDQLGQ   92 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-----------~~d~~~   92 (358)
                      .....|.|+||++++|..+|+.++..+.  .++|+|++.  ....+..+.+..   ++..+..           ....++
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~  110 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK  110 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence            4556899999988999999999999886  899999997  333344444321   2222211           012346


Q ss_pred             ccCCCCEEEEcCCC-CCCCC--CCHHHH---HHH----HHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           93 ALEDSDVVIIPAGV-PRKPG--MTRDDL---FNI----NAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        93 al~~aDiVIi~ag~-~~~~g--~~r~~~---~~~----N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      ...+.|++|..||+ +-++-  .++.+.   +.-    -..+++.+.+.|.+.+ ++.|+.++.-.+
T Consensus       111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~IaS~aG  176 (300)
T KOG1201|consen  111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIASVAG  176 (300)
T ss_pred             hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEehhhhc
Confidence            78899999999996 33332  333322   223    3567789999988765 666665554443

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.045  Score=51.12  Aligned_cols=159  Identities=16%  Similarity=0.110  Sum_probs=81.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++++.+.  ......++.......++..+. +-.|   +.+.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  899999765  222223333211111232221 1112   112222      


Q ss_pred             -CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           96 -DSDVVIIPAGVPRK--P--GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        96 -~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                       ..|+||..+|....  +  ..+.   .+.+..|..-...+.+.+.++   ...+.++++|....           ..+ 
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~-----------~~~-  152 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA-----------SNT-  152 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh-----------cCC-
Confidence             67999999985321  1  1222   223444555444444433322   23456665554321           111 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      .|+.-.++.+......+-..+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~  188 (276)
T PRK05875        153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR  188 (276)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22222334433223344555566553  4556665553

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.67  E-value=0.044  Score=50.17  Aligned_cols=116  Identities=16%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cc-------cccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~al~   95 (358)
                      +.++|.|+||+|.+|.+++..|+..+.  +|++.+.+........+....  .++..+. +-+|   +.       +...
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999887  899999765322222232211  1222221 1111   11       1234


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..|++|.++|.....   ..+   -.+.+..|+.-    .+.+.+.+.+....+.+++++.
T Consensus        80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            689999999864211   111   12345556443    4444444444333466666554

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.036  Score=50.33  Aligned_cols=115  Identities=19%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CC---ccccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-ND---QLGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~---d~~~a-------l   94 (358)
                      .++|.|+||+|.+|+.++..|+..+.  +|+++++++.  .....++...   .++..+.. -+   ++.+.       +
T Consensus         6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999988876  8999998752  2222334321   12322211 11   11222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP  147 (358)
                      .+.|+||.++|.....   ..+..   +.+..|+.-...+.+.+.+.  ...+.+++++..
T Consensus        81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            3789999998754321   12222   33444544333333333222  234556666654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.66  E-value=0.0057  Score=52.15  Aligned_cols=118  Identities=17%  Similarity=0.197  Sum_probs=70.5

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-----CCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-----~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+|+|+ |.+|..+|..|.+.+.  +|.|++..+ ......-..     ......+.......+..+.....|+||++..
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789998 9999999999999887  899999765 222211111     1100111111111111135789999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~  175 (358)
                      ..            .    ..+..+.++.+. |+..++.+-|=.+....+.    +.   +++.++++- +.
T Consensus        77 a~------------~----~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~----~~---~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 AY------------Q----LEQALQSLKPYLDPNTTIVSLQNGMGNEEVLA----EY---FPRPRVLGGVTT  125 (151)
T ss_dssp             GG------------G----HHHHHHHHCTGEETTEEEEEESSSSSHHHHHH----CH---STGSGEEEEEEE
T ss_pred             cc------------c----hHHHHHHHhhccCCCcEEEEEeCCCCcHHHHH----HH---cCCCcEEEEEEe
Confidence            21            1    233555566666 6778888899887665432    22   566788754 44

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.66  E-value=0.0075  Score=58.89  Aligned_cols=95  Identities=19%  Similarity=0.261  Sum_probs=60.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|||. |.+|+.+|..|...+.  +|+.||+.....  .+        .++.   ..++.+++++||+|++..
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~--------~~~~---~~~l~ell~~aDiVil~l  206 (330)
T PRK12480        143 PVKNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LD--------FLTY---KDSVKEAIKDADIISLHV  206 (330)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hh--------hhhc---cCCHHHHHhcCCEEEEeC
Confidence            345679999997 9999999999887665  999999865211  00        0111   235678899999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                        |..         ..+..++.  ...+....|++++|+++--.
T Consensus       207 --P~t---------~~t~~li~--~~~l~~mk~gavlIN~aRG~  237 (330)
T PRK12480        207 --PAN---------KESYHLFD--KAMFDHVKKGAILVNAARGA  237 (330)
T ss_pred             --CCc---------HHHHHHHh--HHHHhcCCCCcEEEEcCCcc
Confidence              211         12222221  23333345788888776543

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.038  Score=50.84  Aligned_cols=156  Identities=14%  Similarity=0.116  Sum_probs=81.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-----   95 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++++.++.  .....++.+..  .++..+. +-+   ++.+.++     
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   81 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA   81 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  8999998752  22233333222  1233321 111   1222222     


Q ss_pred             --CCCEEEEcCCCCCCC----CCCHH---HHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           96 --DSDVVIIPAGVPRKP----GMTRD---DLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~----g~~r~---~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                        .-|+||..+|.....    ..+..   +.+..|+.-.    +...+.+.+.. .+.+++++.....           .
T Consensus        82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~ii~~sS~~~~-----------~  149 (253)
T PRK06172         82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG-GGAIVNTASVAGL-----------G  149 (253)
T ss_pred             hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhc-----------c
Confidence              459999999864221    22332   2344554443    33344444332 3455655553311           1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+.-....+-+.+++.+  .+..+++..+
T Consensus       150 ~-~~~~~~Y~~sKaa~~~~~~~la~e~--~~~~i~v~~i  185 (253)
T PRK06172        150 A-APKMSIYAASKHAVIGLTKSAAIEY--AKKGIRVNAV  185 (253)
T ss_pred             C-CCCCchhHHHHHHHHHHHHHHHHHh--cccCeEEEEE
Confidence            1 2222233333222234556666665  3456666555

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.65  E-value=0.065  Score=50.28  Aligned_cols=158  Identities=14%  Similarity=0.161  Sum_probs=84.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------HHHHHHhhcCCCCccEEEEe-cC---Cccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GN---DQLGQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~---~d~~~a   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++++.+..         ...+.++....  .++..+. +-   .++.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~   80 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA   80 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence            345899999999999999999998886  8999997641         11122232211  1222221 11   112222


Q ss_pred             c-------CCCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           94 L-------EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        94 l-------~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      +       ...|+||.++|.... +  ..+..   ..+..|+.    +.+.+.+.+.+. ..+.+++++.+.....    
T Consensus        81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~~~----  155 (273)
T PRK08278         81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKS-ENPHILTLSPPLNLDP----  155 (273)
T ss_pred             HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhc-CCCEEEEECCchhccc----
Confidence            2       367999999986321 1  22332   23444544    334444444433 3456666664432110    


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                           . +++....++.+.....++-..+++.++  ++.|++..+
T Consensus       156 -----~-~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i  192 (273)
T PRK08278        156 -----K-WFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL  192 (273)
T ss_pred             -----c-ccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence                 0 023344556554334566677777765  455666555

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.65  E-value=0.028  Score=56.48  Aligned_cols=104  Identities=18%  Similarity=0.295  Sum_probs=62.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~aDiVIi  102 (358)
                      ++++|.|+||+|++|.+++..|+..+.  +++++|.++.. ....+.+...  .+.... +-   +++.+.+.+.|++|.
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~--~v~~v~~Dvsd~~~v~~~l~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDL--PVKTLHWQVGQEAALAELLEKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCC--CeEEEEeeCCCHHHHHHHhCCCCEEEE
Confidence            456899999999999999999998886  89999876521 1111211111  111111 11   223345788999999


Q ss_pred             cCCCCCCCCCCH---HHHHHHHH----HHHHHHHHHHHhh
Q 018314          103 PAGVPRKPGMTR---DDLFNINA----GIVKDLCSAIAKY  135 (358)
Q Consensus       103 ~ag~~~~~g~~r---~~~~~~N~----~i~~~i~~~i~~~  135 (358)
                      .||.....+.+.   .+.+..|.    .+++.+.+.+++.
T Consensus       252 nAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        252 NHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             CCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            998643333332   23445554    4556666666554

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.63  E-value=0.03  Score=51.57  Aligned_cols=111  Identities=13%  Similarity=0.180  Sum_probs=63.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (358)
                      |+|.|+||+|++|..++..|...+.  +|+++|.++..  ....++.     .++.... +-+|   ..+       .+.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~i~~~~~~~~~~~~   73 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWR   73 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5899999999999999999998887  89999986521  1111111     1122111 1111   111       234


Q ss_pred             CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|+||..+|...  .+  ..+.   .+.+..|..-    .+.+.+.+.+.. .+.++++|..
T Consensus        74 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  135 (248)
T PRK10538         74 NIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGST  135 (248)
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEECCc
Confidence            7999999998632  11  2222   2334555444    455555554433 3456666553

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.63  E-value=0.03  Score=51.82  Aligned_cols=124  Identities=15%  Similarity=0.162  Sum_probs=68.1

Q ss_pred             ccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCc---cc
Q 018314           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LG   91 (358)
Q Consensus        17 ~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~   91 (358)
                      |+..+.+++  .++|.|+||+|.+|..++..|+..+.  .+++++.++ .......+.+..  .++..+. +.+|   ..
T Consensus         6 ~~~~~~~l~--~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~   79 (258)
T PRK06935          6 FSMDFFSLD--GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGTNWDETRRLIEKEG--RKVTFVQVDLTKPESAE   79 (258)
T ss_pred             hccccccCC--CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHhcC--CceEEEEcCCCCHHHHH
Confidence            444445443  45899999999999999999998887  888998764 122222222211  1222221 1122   11


Q ss_pred             ccc-------CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           92 QAL-------EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        92 ~al-------~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.+       ...|++|.++|.... +  ..+.   .+.+..|+.-    .+.+.+.+++.. .+.+++++..
T Consensus        80 ~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  151 (258)
T PRK06935         80 KVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG-SGKIINIASM  151 (258)
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC-CeEEEEECCH
Confidence            222       267999999986431 1  1222   2334455444    444445554433 3556666554

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.63  E-value=0.023  Score=52.55  Aligned_cols=151  Identities=19%  Similarity=0.199  Sum_probs=80.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-c---CCccccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-G---NDQLGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a-------l   94 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++.|.+..  .....++..     ++.... +   ..+..++       +
T Consensus         6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07067          6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF   78 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999887  8999998762  222222221     122111 1   1112222       2


Q ss_pred             CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHH----hhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIA----KYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~----~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ...|++|.++|.... +  ..+   -...+..|..-...+.+.+.    +..+.+.+++++.....           .| 
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~-----------~~-  146 (257)
T PRK07067         79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGR-----------RG-  146 (257)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhC-----------CC-
Confidence            468999999886421 1  112   22335556554444444443    33344566666553211           12 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVP  199 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~  199 (358)
                      .++.-.++.+......+.+.+++.+.  +..+++.
T Consensus       147 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~  179 (257)
T PRK07067        147 EALVSHYCATKAAVISYTQSAALALI--RHGINVN  179 (257)
T ss_pred             CCCCchhhhhHHHHHHHHHHHHHHhc--ccCeEEE
Confidence            33333444433222345556666553  4455543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.63  E-value=0.0045  Score=60.29  Aligned_cols=92  Identities=14%  Similarity=0.148  Sum_probs=60.5

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      |-.++|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+.....+.+|.+||++.  ....+.++.+.  ...+..
T Consensus       107 lT~~RTaA~salaa~~La~~-~~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~  182 (325)
T TIGR02371       107 ITDMRTGAAGGVAAKYLARK-DSSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA  182 (325)
T ss_pred             hhhHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE
Confidence            34455555555555555544 4568999997 999988766665555678999999986  23334444432  223443


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .   .|.++++++||+|+.+-
T Consensus       183 ~---~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       183 A---TDPREAVEGCDILVTTT  200 (325)
T ss_pred             e---CCHHHHhccCCEEEEec
Confidence            2   45678999999999864

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=96.62  E-value=0.051  Score=52.04  Aligned_cols=150  Identities=15%  Similarity=0.077  Sum_probs=97.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCC-CccEEEEecCCcccccc--CCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINT-RSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al--~~aDiVIi~a  104 (358)
                      |+|.|+|++|.|||+++..|...++  +++.+|--. -...+.+-....+ ..++.-   ..-+.+.+  ..-|.||+.|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  999999654 1112111100000 001110   00111111  3788999988


Q ss_pred             CCCCCCCC---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-----eeCCCCc-chHHHHHHHHHhCCCCCCceEeecc
Q 018314          105 GVPRKPGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-----ISNPVNS-TVPIAAEVFKKAGTYNEKKLFGVTT  175 (358)
Q Consensus       105 g~~~~~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-----~tNP~d~-~t~~~~~~~~~sg~~~~~kviG~t~  175 (358)
                      |... -|+   .-+.++..|+--...+.+.|++++.+-+|..     +.+|..+ +++       ... ..|.+.+|-|.
T Consensus        76 a~~~-VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E-------~~~-~~p~NPYG~sK  146 (329)
T COG1087          76 ASIS-VGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISE-------TSP-LAPINPYGRSK  146 (329)
T ss_pred             cccc-cchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCC-------CCC-CCCCCcchhHH
Confidence            7432 132   2467889999999999999999997765432     3455542 221       222 55778899998


Q ss_pred             ccHHHHHHHHHHHcCCC
Q 018314          176 LDVVRAKTFYAGKANVN  192 (358)
Q Consensus       176 lds~R~~~~la~~l~v~  192 (358)
                      |...++.+-+++..+.+
T Consensus       147 lm~E~iL~d~~~a~~~~  163 (329)
T COG1087         147 LMSEEILRDAAKANPFK  163 (329)
T ss_pred             HHHHHHHHHHHHhCCCc
Confidence            87888888888887644

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.61  E-value=0.048  Score=50.36  Aligned_cols=118  Identities=14%  Similarity=0.216  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (358)
                      ++|.|+||+|.+|.+++..|+..+.  +|+++|.+..  .....++.+.....++.... +.+|   ..++       +.
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3699999999999999999999886  8999998652  22222332211101222221 1112   1112       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCHHH---HHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTRDD---LFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r~~---~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|+||.++|.+...   ..+..+   .+..|+.    +.+.+.+.+.+..+++.++.++...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            579999999865322   223222   2344443    3566666666555456677666643

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.025  Score=52.61  Aligned_cols=103  Identities=14%  Similarity=0.205  Sum_probs=60.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      .+++.|+||+|++|..++..++..+.  ++++.|.+......... +.. ...+..- +..++..+.+...|++|..||.
T Consensus        14 ~k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~   89 (245)
T PRK12367         14 GKRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGI   89 (245)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCcc
Confidence            45899999999999999999999886  89999986521111111 111 0011111 1112333556789999999986


Q ss_pred             CCCCCCCH---HHHHHHHHH----HHHHHHHHHHh
Q 018314          107 PRKPGMTR---DDLFNINAG----IVKDLCSAIAK  134 (358)
Q Consensus       107 ~~~~g~~r---~~~~~~N~~----i~~~i~~~i~~  134 (358)
                      ......+.   .+.+..|..    +.+.+.+.+.+
T Consensus        90 ~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~  124 (245)
T PRK12367         90 NPGGRQDPENINKALEINALSSWRLLELFEDIALN  124 (245)
T ss_pred             CCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            43222222   334555654    45555555544

>PRK07832 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.13  Score=47.99  Aligned_cols=117  Identities=20%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEE-ecCCcc----------ccccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQL----------GQALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~----------~~al~   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++++.++  ......++...... .+... .+-+|.          .+.+.
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGT-VPEHRALDISDYDAVAAFAADIHAAHG   77 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCC-cceEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            3799999999999999999998886  799999865  22223333322111 11110 111111          12234


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|+||..+|.....   ..+.   ...+..|..-    .+.+.+.+.+....+.+++++...
T Consensus        78 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         78 SMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            689999999864311   1222   2334555443    344444444433346666666544

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.016  Score=53.13  Aligned_cols=115  Identities=15%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .++|.|+||+|++|.+++..|+..+.  +|++.+.+..   .....++....  .++..+. +-+|   +.+.+      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999998886  8888887541   12222333211  1222221 1122   11122      


Q ss_pred             -CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                       .+.|+||..+|.......+....+..|..-...+.+.+.++. .++.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999999875321111122233455555555555555543 2455665554

>PRK05717 oxidoreductase; Validated

Probab=96.58  E-value=0.015  Score=53.66  Aligned_cols=152  Identities=16%  Similarity=0.192  Sum_probs=81.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH--HHHhhcCCCCccEEEEe-cCCc---ccc-------cc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYM-GNDQ---LGQ-------AL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~--~~dl~~~~~~~~v~~~~-~~~d---~~~-------al   94 (358)
                      .++|.|+||+|++|++++..|+..+.  +|++.|.+.....  ..++.     .++..+. +-.|   ..+       .+
T Consensus        10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (255)
T PRK05717         10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF   82 (255)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999998886  8999997652211  11121     1122111 1111   111       12


Q ss_pred             CCCCEEEEcCCCCCCC-----CCCH---HHHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRKP-----GMTR---DDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~-----g~~r---~~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ...|+||..+|.....     ..+.   ...+..|..-...+.+.+.++  ...+.+|++|.....           .+ 
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~~-  150 (255)
T PRK05717         83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------QS-  150 (255)
T ss_pred             CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------CC-
Confidence            3479999999864321     1122   234566665555555555432  123556666543321           11 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.+|.+......+-+.+++.++  + .+++..+
T Consensus       151 ~~~~~~Y~~sKaa~~~~~~~la~~~~--~-~i~v~~i  184 (255)
T PRK05717        151 EPDTEAYAASKGGLLALTHALAISLG--P-EIRVNAV  184 (255)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--C-CCEEEEE
Confidence            22223445543223355667777764  2 2555444

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.58  E-value=0.012  Score=55.81  Aligned_cols=66  Identities=23%  Similarity=0.362  Sum_probs=43.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||. |.+|.+++..|...++..+|+.||+++..  ...+.+...   +...   .++.+ +.+||+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~~---~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDEI---VSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Cccc---CCHHH-HhcCCEEEEeC
Confidence            58999997 99999999999988865589999987521  111222111   1111   12334 45699999986

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=96.56  E-value=0.023  Score=53.88  Aligned_cols=105  Identities=20%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cC---CccccccC--CCCEEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GN---DQLGQALE--DSDVVI  101 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aDiVI  101 (358)
                      ||.|+||+|++|..++..|...+.  +|+++|....  ......+.+..   .++... +.   +++.++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998886  7888885431  11111111110   222221 11   12223343  689999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (358)
                      .++|.....  .....+.+..|+.....+.+.+.+.....
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~  115 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKK  115 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCE
Confidence            999864322  12334567788988889988888765443

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.56  E-value=0.033  Score=53.07  Aligned_cols=122  Identities=18%  Similarity=0.267  Sum_probs=81.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe----cCCccc-------c
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM----GNDQLG-------Q   92 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~----~~~d~~-------~   92 (358)
                      -..+.|.|+||++++|.++|+.++..|.  .++|+....  .+....++.......++....    +.++.+       .
T Consensus        10 ~~~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   10 LAGKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR   87 (282)
T ss_pred             hCCCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999986  678887765  333335555443211122221    111222       3


Q ss_pred             ccCCCCEEEEcCCCCCCCC-C---C---HHHHHH----HHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           93 ALEDSDVVIIPAGVPRKPG-M---T---RDDLFN----INAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g-~---~---r~~~~~----~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      -+.+.|+.|..||..+ .+ .   +   ....+.    ..+-..+...+.+++.+ ++.|++++...+-+
T Consensus        88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~  155 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKM  155 (282)
T ss_pred             hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccccc
Confidence            5689999999999877 32 1   1   222333    44778899999999988 88888777776544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.54  E-value=0.0055  Score=59.36  Aligned_cols=94  Identities=18%  Similarity=0.248  Sum_probs=61.4

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v   81 (358)
                      ..+-.++|-|-.+.+-+++..+ ...+|+|||+ |.+|...+..+.....+.+|.+||+..  ....+.++.+..  ..+
T Consensus       102 ~~lT~~RTaa~sala~~~La~~-~~~~v~iiG~-G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g--~~~  177 (314)
T PRK06141        102 TELTARRTAAASALAASYLARK-DASRLLVVGT-GRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQG--FDA  177 (314)
T ss_pred             cchhcchhHHHHHHHHHHhCCC-CCceEEEECC-cHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcC--Cce
Confidence            3445566666666666665544 4568999997 999999987666533356999999875  334444444321  134


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...   .++++++++||+|+.+-
T Consensus       178 ~~~---~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        178 EVV---TDLEAAVRQADIISCAT  197 (314)
T ss_pred             EEe---CCHHHHHhcCCEEEEee
Confidence            432   44567899999996653

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.54  E-value=0.013  Score=54.33  Aligned_cols=109  Identities=19%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC----Ccccccc-C
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN----DQLGQAL-E   95 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~----~d~~~al-~   95 (358)
                      -..+.+++||.|+||+|.+|+.++..|...+.  +|+.+.++....... +.. .  ..++... +-    .++.+++ .
T Consensus        11 ~~~~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~--~~~~~~~~Dl~d~~~~l~~~~~~   84 (251)
T PLN00141         11 DAENVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-D--PSLQIVRADVTEGSDKLVEAIGD   84 (251)
T ss_pred             ccccccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-C--CceEEEEeeCCCCHHHHHHHhhc
Confidence            34556788999999999999999999988876  787776554221111 111 1  1222221 11    1233556 6


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      ++|+||.++|.....+.  ......|..-...+.+.+.+....
T Consensus        85 ~~d~vi~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~  125 (251)
T PLN00141         85 DSDAVICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT  125 (251)
T ss_pred             CCCEEEECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC
Confidence            89999998875322111  111223444455666666655443

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.54  E-value=0.011  Score=57.32  Aligned_cols=73  Identities=30%  Similarity=0.406  Sum_probs=50.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCCcHHHH-HHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++||+|+||+|.||+.+...|.. ...+.++.++-..+..|+. .++..-..  .+.-  ...| ..+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~-~~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAAD-EFVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--cccc-ccccccCCEEEEeCc
Confidence            46999999999999999999999 4567778888776644443 44443221  1111  0122 245779999999986

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.54  E-value=0.028  Score=51.98  Aligned_cols=156  Identities=16%  Similarity=0.201  Sum_probs=83.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCC---ccccc-------cCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQA-------LED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l~~   96 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|++++.++.......+....  .++..+. +-+   +..+.       +..
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999887  899988754322222222211  1222211 111   12222       235


Q ss_pred             CCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      .|++|..||.....   ..+..   ..+..|+    .+.+.+.+.+.+....+.||+++......           + .+
T Consensus        84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~-~~  151 (251)
T PRK12481         84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ-----------G-GI  151 (251)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC-----------C-CC
Confidence            79999999864321   12222   2344453    34566666665544446677665543211           1 12


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+......+-+.+|..+.  +..|++..+
T Consensus       152 ~~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        152 RVPSYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            222334433223445566666553  455655544

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=96.51  E-value=0.0096  Score=50.84  Aligned_cols=73  Identities=22%  Similarity=0.349  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.++|+|+|+ |.+|..++..+...+ ..++.++|.+..  ...+.++....  .....    .+..+.++++|+||.+.
T Consensus        18 ~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~Dvvi~~~   89 (155)
T cd01065          18 KGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIAY----LDLEELLAEADLIINTT   89 (155)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--cceee----cchhhccccCCEEEeCc
Confidence            4569999998 999999999998876 458999998752  22223332110  01111    23455689999999987


Q ss_pred             CCC
Q 018314          105 GVP  107 (358)
Q Consensus       105 g~~  107 (358)
                      ..+
T Consensus        90 ~~~   92 (155)
T cd01065          90 PVG   92 (155)
T ss_pred             CCC
Confidence            543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02256 arogenate dehydrogenase

Probab=96.50  E-value=0.017  Score=55.81  Aligned_cols=66  Identities=21%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~a  104 (358)
                      .+++||+|||+ |.+|..++..+...+.  +|+.+|.+.....+.++   .    +..+   ++..+.+ .++|+||++.
T Consensus        34 ~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~~---~~~~e~~~~~aDvVilav  100 (304)
T PLN02256         34 SRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSFF---RDPDDFCEEHPDVVLLCT  100 (304)
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Ceee---CCHHHHhhCCCCEEEEec
Confidence            45679999997 9999999999988775  89999987532222221   1    1222   2334444 4799999985

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.50  E-value=0.0065  Score=58.61  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=63.7

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v   81 (358)
                      +.+-.++|-|-.+-+.+++..+ ...+|+|+|+ |.+|...+..+.......+|.+||++.  +...+.++.+..  ..+
T Consensus       102 ~~lT~~RTaA~sala~~~La~~-~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~--~~~  177 (304)
T PRK07340        102 PTVTGRRTAAVSLLAARTLAPA-PPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG--PTA  177 (304)
T ss_pred             hhHHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC--Cee
Confidence            4455666766666666666554 4569999997 999999988876533347999999976  334444454321  123


Q ss_pred             EEEecCCccccccCCCCEEEEcCC
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      . .   .+.++++.+||+||.+-.
T Consensus       178 ~-~---~~~~~av~~aDiVitaT~  197 (304)
T PRK07340        178 E-P---LDGEAIPEAVDLVVTATT  197 (304)
T ss_pred             E-E---CCHHHHhhcCCEEEEccC
Confidence            2 1   355778999999998653

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.49  E-value=0.023  Score=48.26  Aligned_cols=33  Identities=27%  Similarity=0.600  Sum_probs=29.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||.|+|+ |.+|+.++..|+..+. .++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999999986 6899999863

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=96.49  E-value=0.096  Score=48.70  Aligned_cols=155  Identities=14%  Similarity=0.163  Sum_probs=94.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEecC-------CccccccCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGN-------DQLGQALEDSD   98 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~-------~d~~~al~~aD   98 (358)
                      +-+.|+||++++|..+|..|+..|.  .++|..++.  .++.+.++.+.. ....+..+ +.       ..+.+.+...|
T Consensus         7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVt-D~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVT-DRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccC-CHHHHHHHHHHHHHhhCccc
Confidence            3478889999999999999999998  999999986  566677776411 11111111 11       11345577899


Q ss_pred             EEEEcCCCCCCCC------CCHHHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           99 VVIIPAGVPRKPG------MTRDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        99 iVIi~ag~~~~~g------~~r~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      ++|..||..+...      .+...++..|+.-+    +.+.+.+.+.. .+.||+++.=...-.            ||..
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~-~G~IiN~~SiAG~~~------------y~~~  150 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK-SGHIINLGSIAGRYP------------YPGG  150 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC-CceEEEecccccccc------------CCCC
Confidence            9999999754321      12345567776554    55555555443 557787766553221            6667


Q ss_pred             ceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+++-|.-...-|...+-+.+  ..+.|++..+
T Consensus       151 ~vY~ATK~aV~~fs~~LR~e~--~g~~IRVt~I  181 (246)
T COG4221         151 AVYGATKAAVRAFSLGLRQEL--AGTGIRVTVI  181 (246)
T ss_pred             ccchhhHHHHHHHHHHHHHHh--cCCCeeEEEe
Confidence            787775332223333333332  2467777666

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.48  E-value=0.02  Score=51.02  Aligned_cols=104  Identities=15%  Similarity=0.147  Sum_probs=61.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+||||+|.+|+.++..+..+++  |++-+=+++.+-.+.  ..... .+-..+ +.+.+.++++|-|+||.+-|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~i-~q~Dif-d~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVTI-LQKDIF-DLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--cccee-eccccc-ChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999998  888887765221111  11100 011111 11223468999999999876543


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                       ++.  .   ..-.+-.+.+...++... ...++++.
T Consensus        75 -~~~--~---~~~~k~~~~li~~l~~ag-v~RllVVG  104 (211)
T COG2910          75 -SDN--D---ELHSKSIEALIEALKGAG-VPRLLVVG  104 (211)
T ss_pred             -CCh--h---HHHHHHHHHHHHHHhhcC-CeeEEEEc
Confidence             221  1   112222455555555433 44566664

>PLN02686 cinnamoyl-CoA reductase

Probab=96.48  E-value=0.011  Score=58.43  Aligned_cols=108  Identities=11%  Similarity=0.129  Sum_probs=66.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcC---C-CCccEEEEe----cCCccccccCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHI---N-TRSEVAGYM----GNDQLGQALED   96 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~---~-~~~~v~~~~----~~~d~~~al~~   96 (358)
                      .++++|.|+||+|++|++++..|+..+.  +|+++..+... ....++...   . ....+....    +.+++.+++++
T Consensus        51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         51 AEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             CCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            4567999999999999999999999887  78776544311 111122110   0 001222221    11234567889


Q ss_pred             CCEEEEcCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHhh
Q 018314           97 SDVVIIPAGVPRKPGM--TRDDLFNINAGIVKDLCSAIAKY  135 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~--~r~~~~~~N~~i~~~i~~~i~~~  135 (358)
                      +|.|+++++.....+.  ........|..-...+.+.+.+.
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~  169 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRT  169 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhc
Confidence            9999998875322221  12344567888888888888775

>PRK12828 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.024  Score=51.28  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|+++|.+.
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~   41 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA   41 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence            45899999999999999999998886  799999865

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.46  E-value=0.02  Score=52.59  Aligned_cols=114  Identities=15%  Similarity=0.237  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l   94 (358)
                      .++|.|+||+|.+|..++..|...+.  +|++++++..  .....++....  .++..+. +-.   ++.++       +
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  8999998762  22233343211  1222221 111   11122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .+.|+||.++|.....   ..+.   .+.+..|..-    .+.+.+.+++... ..+++++.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            3689999999854211   1111   2233444443    6666666665543 34554544

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.44  E-value=0.042  Score=50.21  Aligned_cols=114  Identities=21%  Similarity=0.282  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .++|.|+||+|++|+.++..|+..+.  +|+++|.+..  .....++.+..  .++.... +-.|   +.+.       +
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  8999998652  22223333221  1232221 1111   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tN  146 (358)
                      ...|+||..+|.....   ..+.   ...+..|+.-...+.+.    +++.. .+.+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG-AGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEECc
Confidence            3589999999853211   1222   22355665555444444    43333 344555544

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.43  E-value=0.0071  Score=57.99  Aligned_cols=64  Identities=19%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||. |.+|..++..|+..++  +|+.||+++..  ..++....    +..   ..++.+++++||+||++.
T Consensus         2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML   65 (296)
T ss_pred             CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence            58999997 9999999999998887  89999987522  22232221    111   134457889999999985

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=96.42  E-value=0.0066  Score=57.45  Aligned_cols=80  Identities=18%  Similarity=0.140  Sum_probs=54.8

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCc--cEEEEecCCccccccCCCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS--EVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~--~v~~~~~~~d~~~al~~aD   98 (358)
                      ....+..+.||+|+||+|+|||+++-.|+..++  +|.-.|-.-. +....+.|....+  ++....   --..-++.+|
T Consensus        20 ~~~~p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~hd---v~~pl~~evD   93 (350)
T KOG1429|consen   20 EQVKPSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIRHD---VVEPLLKEVD   93 (350)
T ss_pred             hcccCCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEEee---chhHHHHHhh
Confidence            445556778999999999999999999999986  8988886532 2223344443222  233221   1234689999


Q ss_pred             EEEEcCCC
Q 018314           99 VVIIPAGV  106 (358)
Q Consensus        99 iVIi~ag~  106 (358)
                      -|+..|..
T Consensus        94 ~IyhLAap  101 (350)
T KOG1429|consen   94 QIYHLAAP  101 (350)
T ss_pred             hhhhhccC
Confidence            99998754

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.42  E-value=0.0067  Score=59.04  Aligned_cols=93  Identities=16%  Similarity=0.256  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      +-..+|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+.....+.+|.++|+++  ....+.++.+. ....+..
T Consensus       106 lT~~RTaa~sala~~~la~~-~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~  182 (325)
T PRK08618        106 LTQIRTGALSGVATKYLARE-DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV  182 (325)
T ss_pred             hhhhhHHHHHHHHHHHhcCC-CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE
Confidence            34445555444444554444 3558999997 999987776665444468999999976  23334444322 1223443


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +   +|+++++.+||+||.+-
T Consensus       183 ~---~~~~~~~~~aDiVi~aT  200 (325)
T PRK08618        183 V---NSADEAIEEADIIVTVT  200 (325)
T ss_pred             e---CCHHHHHhcCCEEEEcc
Confidence            3   45678899999999864

>PRK05865 hypothetical protein; Provisional

Probab=96.42  E-value=0.011  Score=64.48  Aligned_cols=104  Identities=18%  Similarity=0.103  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |||.|+||+|++|++++..|...+.  +|+.+|.+....    +.. .. .-+..- .+.+++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~v-~~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-SA-DFIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-Cc-eEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999998887  899999753211    110 10 011111 11134456788999999998753


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      . +      ....|+.....+.+.+++.+.. .+|.+|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            2 1      3467888888888888877543 456666654

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.053  Score=49.41  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cC---Ccccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GN---DQLGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al-----   94 (358)
                      +.++|.|+||+|.+|+.++..|+..+.  ++++.+.+..   .....++....  .++..+. +-   .++++++     
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAET   79 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999887  7777765441   22222333221  1233221 11   1222233     


Q ss_pred             --CCCCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeC
Q 018314           95 --EDSDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tN  146 (358)
                        .+.|+||..+|.... +  ..+   -...+..|+.-...+...+.+. .+++.+++++.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence              368999999986421 1  111   2233556655444444444333 24456666654

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.04  Score=51.23  Aligned_cols=110  Identities=18%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l   94 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|++.|.+..  .....++.     .++..+. +-+   ++.+.       +
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDADNGAAVAASLG-----ERARFIATDITDDAAIERAVATVVARF   78 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999887  8999998752  22222221     1122211 111   12222       2


Q ss_pred             CCCCEEEEcCCCCCCC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ...|++|..+|.....  ..+.   ...+..|+.    ..+.+.+.+.  .+.+.+|+++.
T Consensus        79 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~g~ii~isS  137 (261)
T PRK08265         79 GRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLA--RGGGAIVNFTS  137 (261)
T ss_pred             CCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh--cCCcEEEEECc
Confidence            4579999999864322  2222   223444544    4444445444  34566666654

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.40  E-value=0.025  Score=54.35  Aligned_cols=64  Identities=14%  Similarity=0.312  Sum_probs=43.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC---CCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVIi~a  104 (358)
                      |||+|||. |.+|..++..|...++  +|+.||.++...  ..+.+..    ...   ..++.+.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~--~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAV--DVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence            48999997 9999999999998886  899999875222  2222211    122   1234455544   68998874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.40  E-value=0.026  Score=51.15  Aligned_cols=36  Identities=28%  Similarity=0.539  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++|.|+||+|.+|..++..|+.++.  +|.+++.++
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~   39 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE   39 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            346899999999999999999998887  799999875

>PRK07576 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.049  Score=50.77  Aligned_cols=118  Identities=19%  Similarity=0.209  Sum_probs=64.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.|++..  .....++....  .++..+. +.+   ++.+.       
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~   83 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE   83 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998886  8999997652  22222333211  1122111 111   12222       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPV  148 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~  148 (358)
                      +...|+||..+|.....   ..+..   ..+..|..-...+.+...++  .+++.+++++.+.
T Consensus        84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            23569999998753211   22222   23345544333333333222  1346677776654

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.39  E-value=0.038  Score=50.97  Aligned_cols=36  Identities=28%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.++|.|+||+|.+|+.++..|+..+.  +|++++.++
T Consensus        10 ~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~   45 (264)
T PRK12829         10 DGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE   45 (264)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            446999999999999999999999887  899999865

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.058  Score=51.90  Aligned_cols=171  Identities=14%  Similarity=0.096  Sum_probs=86.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc----------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.+++..  .....++.......++.... +-.|+.          +.
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~   90 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE   90 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  8999998752  22223343211111233221 111211          12


Q ss_pred             cCCCCEEEEcCCCCCCC--CC---CHHHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           94 LEDSDVVIIPAGVPRKP--GM---TRDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~--g~---~r~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ....|++|..||....+  ..   .-...+..|    .-+.+.+.+.+++.  .+.|++++.-......+-..-+.....
T Consensus        91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vsS~~~~~~~~~~~~~~~~~~  168 (313)
T PRK05854         91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQSSIAARRGAINWDDLNWERS  168 (313)
T ss_pred             CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEechhhcCCCcCccccccccc
Confidence            24589999999863221  11   122234444    33455666666543  355665554332111000000000001


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +++...++.+.+....+-..+++.+......|++..+
T Consensus       169 ~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v  205 (313)
T PRK05854        169 YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLA  205 (313)
T ss_pred             CcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEE
Confidence            2333444554444445556666655444445655544

>PRK12320 hypothetical protein; Provisional

Probab=96.38  E-value=0.016  Score=61.89  Aligned_cols=98  Identities=15%  Similarity=0.090  Sum_probs=64.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c--CCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G--NDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~--~~d~~~al~~aDiVIi~ag  105 (358)
                      |||.|+||+|++|++++..|...++  +|+.+|.....     ..+    ..++... +  ...+.+++.++|+||++++
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~----~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa   69 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALD----PRVDYVCASLRNPVLQELAGEADAVIHLAP   69 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----ccc----CCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence            5899999999999999999998887  89999965321     111    1111111 0  1123355689999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...  ..    ....|+.....+.+.+++.+.  .+|.+|
T Consensus        70 ~~~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         70 VDT--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             cCc--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            521  11    124678888888888887654  455444

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.38  E-value=0.009  Score=58.26  Aligned_cols=93  Identities=19%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      |-..+|=+-.+.+..++..+ ..++|+|||+ |..|...+..+.....+.+|.+||++.  .+..+.++.+.. ...+..
T Consensus       111 lt~~rT~a~~~~a~~~la~~-~~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~  187 (330)
T PRK08291        111 LTDVRTAAAGAVAARHLARE-DASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV  187 (330)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE
Confidence            33444444444444444432 4469999998 999988877776544467999999876  233344443221 123333


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                         .+|+++++.+||+||.+.
T Consensus       188 ---~~d~~~al~~aDiVi~aT  205 (330)
T PRK08291        188 ---ARDVHEAVAGADIIVTTT  205 (330)
T ss_pred             ---eCCHHHHHccCCEEEEee
Confidence               256678899999998864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.37  E-value=0.0056  Score=56.47  Aligned_cols=71  Identities=23%  Similarity=0.299  Sum_probs=45.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecC--Cccccc-cCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN--DQLGQA-LEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~--~d~~~a-l~~aDiVIi~a  104 (358)
                      |+|+|+|+ |.+|+++|..|...++  +++++|.++.. ....  .+.. ...+.....+  +-|+++ +.++|.+|.+-
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~~--~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEFL--ADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHHh--hhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence            68999998 9999999999999998  89999998721 1111  1100 0111111111  123333 78999999875


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      |
T Consensus        75 ~   75 (225)
T COG0569          75 G   75 (225)
T ss_pred             C
Confidence            4

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.37  E-value=0.013  Score=55.03  Aligned_cols=90  Identities=12%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--cEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .|||+|||+ |.+|.+++..|...+..  .+|+.+|.++..     +       .+...   .+..+.++++|+||++.-
T Consensus         3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~~---~~~~~~~~~~D~Vilavk   66 (260)
T PTZ00431          3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVYL---QSNEELAKTCDIIVLAVK   66 (260)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEEe---CChHHHHHhCCEEEEEeC
Confidence            369999997 99999999999887632  358888875411     0       11211   233456789999999841


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                      -..++++.+.+..+-++..+|.+.+-++
T Consensus        67 ----------------p~~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         67 ----------------PDLAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ----------------HHHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence                            1223344444443333335666777765

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.1  Score=48.16  Aligned_cols=117  Identities=20%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+.+.|+||+|.+|..++..|+..+.  +|++.|.++  ......++.......++..+. +-+|   +.+.+       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999887  899999875  233333443211112232221 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.... +  ..+.   ...+..|..    +.+.+.+.+.+.. .+.||+++..
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  146 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAST  146 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECCh
Confidence            368999999986421 1  1222   223344443    3455555554433 4566666553

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.35  E-value=0.05  Score=50.27  Aligned_cols=117  Identities=15%  Similarity=0.210  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (358)
                      +.+.+.|+||+|.+|.+++..|+..+.  +|+++|..+......++....  .++..+. +-+|   ..+.       +.
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFG   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999999886  888888765322223332211  1222221 1111   1222       23


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ..|++|.+||.....   +.+.   .+.+..|..-    .+.+.+.+.+..+.+.+++++.-
T Consensus        85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~  146 (253)
T PRK08993         85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASM  146 (253)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECch
Confidence            589999999874311   2222   2334455443    44555555554455766666543

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.072  Score=48.59  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .++|.|+||+|.+|+.++..|+..+.  +|++++.++.  .....++....  .++..+. +-.|   +.+.       +
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999998887  8999987652  22233443222  1233322 1122   1111       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tN  146 (358)
                      .+.|+||.++|.....   ..+.   ...+..|..-...+.+.+.++   ...+.+++++.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            5789999999864321   1222   223445555444444444332   22456665554

>PRK07856 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.048  Score=50.24  Aligned_cols=36  Identities=22%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.|.+.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~   40 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRA   40 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            456899999999999999999998887  899999865

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.32  E-value=0.016  Score=57.22  Aligned_cols=71  Identities=20%  Similarity=0.284  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHH-hCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMK-LNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~-~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|+||+|.||+.+...|. +..+ ..+++++......+....+....  ..+..   .++ .+++++.|+|++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 5554 47899998765333333222211  12332   111 247899999999886

>PRK06482 short chain dehydrogenase; Provisional

Probab=96.32  E-value=0.059  Score=50.36  Aligned_cols=112  Identities=15%  Similarity=0.058  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc---cc-------ccCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---GQ-------ALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al~~a   97 (358)
                      ++|.|+||+|++|+.++..|+..+.  .+++.+.+..  ...++.... ..++..+. +-+|.   .+       .+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  7888887641  111221111 11222221 11221   11       13457


Q ss_pred             CEEEEcCCCCCCCC---CCH---HHHHHHHHHHHHHHHHHH----HhhCCCeEEEEeeC
Q 018314           98 DVVIIPAGVPRKPG---MTR---DDLFNINAGIVKDLCSAI----AKYCPNAIVNMISN  146 (358)
Q Consensus        98 DiVIi~ag~~~~~g---~~r---~~~~~~N~~i~~~i~~~i----~~~~p~a~iiv~tN  146 (358)
                      |+||.++|......   .+.   ...+..|..-...+.+.+    ++... +.+++++.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~-~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGG-GRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcC
Confidence            99999998653221   122   234556766665566554    43333 34555543

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.32  E-value=0.011  Score=57.38  Aligned_cols=94  Identities=9%  Similarity=0.059  Sum_probs=64.1

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v   81 (358)
                      ..|-.++|-|-.+-+-+++..+ ....++|||+ |..+..-+..+.....+.+|.+||++..  ...+..+.+..  ..+
T Consensus       105 ~~lT~~RTaA~sala~~~La~~-d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~--~~v  180 (315)
T PRK06823        105 GWLTALRTALAGRIVARLLAPQ-HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALG--FAV  180 (315)
T ss_pred             ChHHHHHHHHHHHHHHHHhcCC-CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcC--CcE
Confidence            3455566666666666666654 5669999997 9998887776666556789999999863  33333343322  245


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...   ++.++++++||+|+.+-
T Consensus       181 ~~~---~~~~~av~~ADIV~taT  200 (315)
T PRK06823        181 NTT---LDAAEVAHAANLIVTTT  200 (315)
T ss_pred             EEE---CCHHHHhcCCCEEEEec
Confidence            442   45678999999999854

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.32  E-value=0.013  Score=48.87  Aligned_cols=72  Identities=29%  Similarity=0.394  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      |||+|+|++|.||+.++..+...+-..=+..+|.++......|+.+..  .+..+..   ++|+++.++.+|+||-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEc
Confidence            699999988999999999998865433345566654211222332221  1223333   25678888899988876

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.31  E-value=0.018  Score=53.98  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=70.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC----CCC-----cEEEEEecCC--c------HHHHHHhhcCCCCccEEEEecCCcc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLN----PLV-----SRLALYDIAN--T------PGVAADVGHINTRSEVAGYMGNDQL   90 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~----~~~-----~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~~~~~d~   90 (358)
                      ..||.|.|| |..|..++.+|...    |.-     ..|+|+|.+.  .      ......+.+...+...     ..++
T Consensus        25 d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~~~L   98 (255)
T PF03949_consen   25 DQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----WGSL   98 (255)
T ss_dssp             G-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------SSH
T ss_pred             HcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----ccCH
Confidence            349999998 99999998777664    653     7899999864  1      1122223332211111     1468


Q ss_pred             ccccCCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchH
Q 018314           91 GQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVP  153 (358)
Q Consensus        91 ~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~  153 (358)
                      .++++++  |++|=+.|.+   |           -+-+++.+.|.+++++.+|+-.|||..  -.++
T Consensus        99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p  151 (255)
T PF03949_consen   99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP  151 (255)
T ss_dssp             HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred             HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence            8999999  9999887643   2           134678888999999999999999987  4554

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.30  E-value=0.009  Score=58.71  Aligned_cols=93  Identities=24%  Similarity=0.342  Sum_probs=62.9

Q ss_pred             hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (358)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~   82 (358)
                      .+-..+|-|-.+-+-++++.+ ....++|||+ |..+..-+..+.....+.+|.+||++.  ....+.++.+.  ..++.
T Consensus       107 ~lT~~RTaA~sala~~~Lar~-da~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~  182 (346)
T PRK07589        107 LLTALRTAATSALAAKYLARP-DSRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIV  182 (346)
T ss_pred             cHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEE
Confidence            344555655555556666544 4568999997 988877766555544578999999986  34455556542  22454


Q ss_pred             EEecCCccccccCCCCEEEEcC
Q 018314           83 GYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        83 ~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..   ++.++++++||+|+.+-
T Consensus       183 ~~---~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        183 AC---RSVAEAVEGADIITTVT  201 (346)
T ss_pred             Ee---CCHHHHHhcCCEEEEec
Confidence            42   46789999999999854

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.30  E-value=0.0092  Score=57.69  Aligned_cols=120  Identities=20%  Similarity=0.266  Sum_probs=70.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHH---HhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAA---DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~---dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|+|| |.||+.+++.|.+.+.  ++.++-..+. +....   .+.+........... +.+ .+.+..+|+||++.
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v   75 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV   75 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence            69999998 9999999999999983  6666665432 11111   111111100111111 122 46678999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceE-eeccc
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF-GVTTL  176 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kvi-G~t~l  176 (358)
                      ..    -            -..+..+.+..+. |+++|+..-|=.+..-.+    .+.   ++.++++ |+|..
T Consensus        76 Ka----~------------q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l----~~~---~~~~~il~G~~~~  126 (307)
T COG1893          76 KA----Y------------QLEEALPSLAPLLGPNTVVLFLQNGLGHEEEL----RKI---LPKETVLGGVTTH  126 (307)
T ss_pred             cc----c------------cHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHH----HHh---CCcceEEEEEeee
Confidence            21    1            1344556666666 677888888888766522    222   5555555 66543

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.30  E-value=0.07  Score=49.29  Aligned_cols=116  Identities=16%  Similarity=0.163  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---c-------cc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q-------AL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~-------al   94 (358)
                      .++|.|+||+|.+|+.++..|+..+.  +|++.|.+..  .....++....  .++.... +-+|..   +       .+
T Consensus        12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999998887  8999997642  22222232211  1222221 112211   1       12


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh----CCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY----CPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~----~p~a~iiv~tNP  147 (358)
                      ...|+||+++|.....   ..+   -.+.+..|+.-...+.+.+.++    .+.+.+++++..
T Consensus        88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~  150 (259)
T PRK08213         88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASV  150 (259)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECCh
Confidence            4679999999853211   111   2344567777666666655544    234556656553

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.076  Score=49.83  Aligned_cols=113  Identities=14%  Similarity=0.133  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (358)
                      +++|.|+||+|++|+.++..|+..+.  +|++.+.+....  .++.... ..++.... +-+|   +.+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45799999999999999999998886  899999865221  1222111 11222211 1111   12222       35


Q ss_pred             CCEEEEcCCCCCC---CCCCHH---HHHHHHHHHHHHHHHH----HHhhCCCeEEEEeeC
Q 018314           97 SDVVIIPAGVPRK---PGMTRD---DLFNINAGIVKDLCSA----IAKYCPNAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~---~g~~r~---~~~~~N~~i~~~i~~~----i~~~~p~a~iiv~tN  146 (358)
                      .|+||.++|....   ...+..   ..+..|+.-...+.+.    +++.. .+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence            7999999986321   122222   3355666544444444    44433 345666654

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.31  Score=45.07  Aligned_cols=35  Identities=34%  Similarity=0.387  Sum_probs=30.0

Q ss_pred             CceEEEEcCCC-ChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G-~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+| .+|..++..|+..+.  +|++.|.+.
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~   52 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE   52 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            45899999876 799999999998887  799999765

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.28  E-value=0.0063  Score=55.79  Aligned_cols=105  Identities=18%  Similarity=0.274  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC------cHHH---HHHhhcCC-CCccEE------EEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------TPGV---AADVGHIN-TRSEVA------GYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~------~~~~---~~dl~~~~-~~~~v~------~~~~~~d~~~   92 (358)
                      -||+|+|. |-+|+..|..++..|+  +|.||||.+      ....   ..+|++.. ...+++      -.++++++.+
T Consensus         4 ~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E   80 (313)
T KOG2305|consen    4 GKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE   80 (313)
T ss_pred             cceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence            49999995 9999999999999998  999999976      1222   22343322 111111      1123567777


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcch
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV  152 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t  152 (358)
                      ..++|=.|=.++              .+-+...+++.+++++.. |..  |..|.....|.
T Consensus        81 ~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mp  125 (313)
T KOG2305|consen   81 LVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMP  125 (313)
T ss_pred             HHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccCh
Confidence            777774433332              466778889999999887 443  44555554443

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.094  Score=49.03  Aligned_cols=114  Identities=13%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---------cccCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---------QALED   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---------~al~~   96 (358)
                      +.+.|+||+|.+|..++..|+..+.  +|++++.+..  .....++.+.....++..+. +-+|..         +.+..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999886  8999987652  22222222211112333322 112211         11245


Q ss_pred             CCEEEEcCCCCCC--CC-CCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEee
Q 018314           97 SDVVIIPAGVPRK--PG-MTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        97 aDiVIi~ag~~~~--~g-~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .|+||.++|....  .. .+.   .+.+..|..-.    +.+.+.+++... +.+++++
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~vs  139 (280)
T PRK06914         82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKS-GKIINIS  139 (280)
T ss_pred             eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CEEEEEC
Confidence            7999999986432  11 121   23344555444    444444554443 3444444

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.27  E-value=0.026  Score=54.56  Aligned_cols=101  Identities=25%  Similarity=0.364  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..++|+|+|+ |.+|..++..+...+ ..+|.++|++..  ...+..+.     ..+..   .+++.+++.++|+||.+.
T Consensus       177 ~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~at  246 (311)
T cd05213         177 KGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISAT  246 (311)
T ss_pred             cCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEECC
Confidence            5679999998 999999998887744 348999998752  22333322     12211   134567789999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t  152 (358)
                      +.|..            ..++...   ++.. ....+++-+++|-|+=.
T Consensus       247 ~~~~~------------~~~~~~~---~~~~~~~~~~viDlavPrdi~~  280 (311)
T cd05213         247 GAPHY------------AKIVERA---MKKRSGKPRLIVDLAVPRDIEP  280 (311)
T ss_pred             CCCch------------HHHHHHH---HhhCCCCCeEEEEeCCCCCCch
Confidence            65531            1111221   1111 24567888999998654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.26  E-value=0.042  Score=52.24  Aligned_cols=122  Identities=24%  Similarity=0.347  Sum_probs=79.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC----CC-----CcEEEEEecCC--c------HHHHHHhhcCCCCccEEEEecCCc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLN----PL-----VSRLALYDIAN--T------PGVAADVGHINTRSEVAGYMGNDQ   89 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~----~~-----~~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~~~~~d   89 (358)
                      +..||.|.|| |..|..++.+|...    |.     -..++++|...  .      ......+.+.. . . .   ...+
T Consensus        24 ~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~-~---~~~~   96 (279)
T cd05312          24 SDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E-K---EGKS   96 (279)
T ss_pred             hhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c-c---cCCC
Confidence            3459999998 99999998777653    54     25899999874  1      11112222211 1 1 1   1256


Q ss_pred             cccccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCC
Q 018314           90 LGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTY  165 (358)
Q Consensus        90 ~~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~  165 (358)
                      +.++++  ++|++|=+.+.+   |-           +-+++.+.|.+++++.+|+-.|||..  -.++  .++++.+.  
T Consensus        97 L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~p--e~a~~~t~--  158 (279)
T cd05312          97 LLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTSKAECTA--EDAYKWTD--  158 (279)
T ss_pred             HHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCCccccCH--HHHHHhhc--
Confidence            889999  999988876433   21           33577888888999999999999985  3333  23344431  


Q ss_pred             CCCceEeec
Q 018314          166 NEKKLFGVT  174 (358)
Q Consensus       166 ~~~kviG~t  174 (358)
                       -+.+++.+
T Consensus       159 -G~ai~ATG  166 (279)
T cd05312         159 -GRALFASG  166 (279)
T ss_pred             -CCEEEEeC
Confidence             24577873

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.25  E-value=0.14  Score=47.46  Aligned_cols=156  Identities=15%  Similarity=0.204  Sum_probs=81.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---c-------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---G-------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a   93 (358)
                      +.+++.|+||+|.+|..++..|+..+.  ++++.|.++.  .....++....  .++..+. +-+|.   .       +.
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999998886  7899987652  22233333221  1222221 11111   1       12


Q ss_pred             cCCCCEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           94 LEDSDVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        94 l~~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      +...|++|.++|... .+  ..+.   ...+..|..    +.+.+.+.+.+. ..+.+++++......           +
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~  152 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKK-GHGKIINICSMMSEL-----------G  152 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCcEEEEEcCccccC-----------C
Confidence            245799999998632 11  1121   222334433    344455555443 355667666654211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+....++.+...-..+-+.+++.++  +..|++..+
T Consensus       153 -~~~~~~Y~~sKaal~~l~~~la~e~~--~~gi~v~~v  187 (265)
T PRK07097        153 -RETVSAYAAAKGGLKMLTKNIASEYG--EANIQCNGI  187 (265)
T ss_pred             -CCCCccHHHHHHHHHHHHHHHHHHhh--hcCceEEEE
Confidence             22233344432222345566666653  445655444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.25  E-value=0.026  Score=55.33  Aligned_cols=75  Identities=19%  Similarity=0.359  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----c----------------HHH--HHHhhcCCCCccEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----T----------------PGV--AADVGHINTRSEVAGY   84 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~----------------~~~--~~dl~~~~~~~~v~~~   84 (358)
                      ..||.|||+ |.+|+.++..|+..|+ ++|.|+|.+.     .                +..  +..+.......+++.+
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            458999998 9999999999999985 5899999874     0                001  1223332223344443


Q ss_pred             ec---CCccccccCCCCEEEEcC
Q 018314           85 MG---NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        85 ~~---~~d~~~al~~aDiVIi~a  104 (358)
                      ..   ..++++.++++|+||.+.
T Consensus       102 ~~~~~~~~~~~~~~~~DlVid~~  124 (338)
T PRK12475        102 VTDVTVEELEELVKEVDLIIDAT  124 (338)
T ss_pred             eccCCHHHHHHHhcCCCEEEEcC
Confidence            21   123456789999999885

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.25  E-value=0.05  Score=55.59  Aligned_cols=127  Identities=17%  Similarity=0.148  Sum_probs=75.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +.++|.|+|+ |.+|..+|..|...+.  +|.++|..+.   ......|....    ++.+.+.. . +...++|+||++
T Consensus        15 ~~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~g----v~~~~~~~-~-~~~~~~D~Vv~s   85 (480)
T PRK01438         15 QGLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEALG----ATVRLGPG-P-TLPEDTDLVVTS   85 (480)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHcC----CEEEECCC-c-cccCCCCEEEEC
Confidence            4568999998 9999999999988887  8999997541   11122343322    33333221 1 235679999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLC--SAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~--~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      .|++..... ....-..+++++.++-  ..+.+...+..+|-+|=.++  .++.+++++++..|
T Consensus        86 ~Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         86 PGWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CCcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            987542211 1111234566654322  22221112344566666655  77888888888766

>PLN02712 arogenate dehydrogenase

Probab=96.25  E-value=0.024  Score=60.54  Aligned_cols=66  Identities=18%  Similarity=0.195  Sum_probs=45.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~a  104 (358)
                      .+++||+|||. |.+|..++..|...+.  +|+.+|.+.....+.++   .    +..+   +|+.+.+ ++||+||++.
T Consensus        50 ~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G----v~~~---~d~~e~~~~~aDvViLav  116 (667)
T PLN02712         50 TTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G----VSFF---LDPHDLCERHPDVILLCT  116 (667)
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C----CEEe---CCHHHHhhcCCCEEEEcC
Confidence            45679999997 9999999999988875  89999986422222221   1    2222   2334433 5799999985

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.11  Score=48.06  Aligned_cols=113  Identities=23%  Similarity=0.200  Sum_probs=63.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      +++|.|+||+|.+|..++..|+..+.  +|++.|.+..  .....++....   ++.... +-+|   +.+++       
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~~~~i~~~~~~~~~~~   76 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTDALQAFAARLPKAA---RVSVYAADVRDADALAAAAADFIAAH   76 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            35899999999999999999999886  8999998651  22222222111   233221 1122   11222       


Q ss_pred             CCCCEEEEcCCCCCCCC----CCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKPG----MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ...|++|..+|......    .+.   ...+..|+.    +.+.+.+.+.+... +.+++++.
T Consensus        77 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~-~~iv~isS  138 (257)
T PRK07024         77 GLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARR-GTLVGIAS  138 (257)
T ss_pred             CCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCC-CEEEEEec
Confidence            23699999998643211    221   223444433    34445556655543 45555554

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.14  Score=46.82  Aligned_cols=77  Identities=23%  Similarity=0.239  Sum_probs=48.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.+.+.  ......++.......++.... +.+|.          .+.+.
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG   80 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998885  899999875  222223333221112233321 11221          12234


Q ss_pred             CCCEEEEcCCCC
Q 018314           96 DSDVVIIPAGVP  107 (358)
Q Consensus        96 ~aDiVIi~ag~~  107 (358)
                      ..|+||..+|..
T Consensus        81 ~id~vi~~ag~~   92 (248)
T PRK08251         81 GLDRVIVNAGIG   92 (248)
T ss_pred             CCCEEEECCCcC
Confidence            689999999864

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.23  E-value=0.063  Score=53.14  Aligned_cols=121  Identities=18%  Similarity=0.216  Sum_probs=72.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH----------Hhh----cCCCCccEEEEecCCcccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----------DVG----HINTRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~----------dl~----~~~~~~~v~~~~~~~d~~~   92 (358)
                      ..++|+|||- |.||..+|..++..+.  +++=+|+++..-...          ++.    ......+++.+   +|. +
T Consensus         8 ~~~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraT---td~-~   80 (436)
T COG0677           8 MSATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRAT---TDP-E   80 (436)
T ss_pred             CceEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEe---cCh-h
Confidence            3479999997 9999999999999998  899999986110000          111    11112356653   453 5


Q ss_pred             ccCCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE--EEeeCCCCcchHHHHHHHHH
Q 018314           93 ALEDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV--NMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i--iv~tNP~d~~t~~~~~~~~~  161 (358)
                      .++.||++|++.=.|.+. .+..+.       .+.+-++.|.++=.++-+  +=-|-|.+.+-.++--+...
T Consensus        81 ~l~~~dv~iI~VPTPl~~~~~pDls-------~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          81 ELKECDVFIICVPTPLKKYREPDLS-------YVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             hcccCCEEEEEecCCcCCCCCCChH-------HHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            688999999997666543 333333       333444444444433323  33477776655554333333

>PRK06182 short chain dehydrogenase; Validated

Probab=96.23  E-value=0.038  Score=51.60  Aligned_cols=113  Identities=15%  Similarity=0.151  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCcccccc-------CCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL-------EDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al-------~~aDi   99 (358)
                      +++|.|+||+|++|..++..|...+.  +|++.+.+...  ..++...... -+..- ++.+++.+.+       .+.|+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~~-~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGVH-PLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCCe-EEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            45899999999999999999998887  89999876521  1122211110 11110 0111222223       37899


Q ss_pred             EEEcCCCCCC-C--CCC---HHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          100 VIIPAGVPRK-P--GMT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       100 VIi~ag~~~~-~--g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||..+|.... +  ..+   ....+..|.    ..++.+.+.+++... +.+++++.
T Consensus        78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            9999986421 1  112   233344554    345666677766543 45565554

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.23  E-value=0.062  Score=51.21  Aligned_cols=114  Identities=12%  Similarity=0.186  Sum_probs=64.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---ccccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~a-------l   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++..+. +-+   +..+.       +
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  115 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGA--TVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRI  115 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            36799999999999999999999886  899999875  222222332211  1222211 111   11222       3


Q ss_pred             CCCCEEEEcCCCCCCC--CC---CH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP--GM---TR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~--g~---~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .+.|+||.+||.....  .+   +.   ...+..|.    .+.+.+.+.+.+... +.+++++.
T Consensus       116 g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-g~iv~isS  178 (293)
T PRK05866        116 GGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGD-GHIINVAT  178 (293)
T ss_pred             CCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEECC
Confidence            3789999999864211  11   11   12344443    345556666655443 45555543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.22  E-value=0.026  Score=52.66  Aligned_cols=36  Identities=22%  Similarity=0.457  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |.+|+.++..|+..|. .+|+|+|.+.
T Consensus        23 ~~~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        23 KASRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            3469999998 9999999999999885 6999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.064  Score=49.28  Aligned_cols=113  Identities=18%  Similarity=0.214  Sum_probs=62.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-CCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-DSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-~aDiVI  101 (358)
                      ++|.|+||+|.+|..++..|+..+.  ++++.+.+..  .....+.....  .++.... +-+   ++.+++. +.|+||
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~id~vi   78 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQAAEWDVDVLL   78 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence            4799999999999999999999886  7888887642  11111111111  1222211 112   2233343 899999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314          102 IPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       102 i~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..+|.....   ..+..   ..+..|..    +.+.+.+.+.+... +.+|++|.
T Consensus        79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            999864321   11221   22333433    34444555554443 45665653

>TIGR01746 Thioester-redct thioester reductase domain

Probab=96.21  E-value=0.05  Score=52.39  Aligned_cols=109  Identities=13%  Similarity=0.074  Sum_probs=67.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH-HHh----hcC-----CCC-ccEEEEecC----------C
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADV----GHI-----NTR-SEVAGYMGN----------D   88 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-~dl----~~~-----~~~-~~v~~~~~~----------~   88 (358)
                      +|.|+||+|++|++++..|...+...+|++..+....... .++    ...     ... .+++...+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            5889999999999999999988754578888876521111 111    110     000 234443221          1


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (358)
                      ++.+..+++|+||++|+... ...+..++...|+.-...+.+...+.....
T Consensus        81 ~~~~~~~~~d~vih~a~~~~-~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~  130 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVN-WVYPYSELRAANVLGTREVLRLAASGRAKP  130 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEec-cCCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence            12234578999999987532 123345566788888888888887765543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.21  E-value=0.084  Score=56.51  Aligned_cols=117  Identities=21%  Similarity=0.249  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|++.  ......++........+.... +-+|   ..+++       
T Consensus       414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999999999999999998886  899999875  222223332111001111111 1122   22233       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .+.|+||..||.... +  ..+..   ..+..|.    -+.+...+.+.+....+.+++++.
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            368999999996432 1  11211   1222332    334566666666554555555544

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.021  Score=53.93  Aligned_cols=97  Identities=16%  Similarity=0.243  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++||++||+ |+||.+++..|...+.  ..+|+..|.++....  ++.+.. +..+     ++|..++...+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~~-g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAEY-GVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHHc-CCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            579999998 9999999999988872  368888887652222  233222 1121     233457889999999986 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                         ||            ..+.++.+.++...++..+|.+.-.+.
T Consensus        71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               33            245566667766445666666655553

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.20  E-value=0.055  Score=52.39  Aligned_cols=117  Identities=17%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe--cCCcc-------ccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQL-------GQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~--~~~d~-------~~al~   95 (358)
                      ....+.|+||+|++|..++..|+..|.  +|+++|+++  .+....++.......++..+.  -++|.       .+.+.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhc
Confidence            356899999999999999999999887  899999876  233334443321111222211  11111       12233


Q ss_pred             --CCCEEEEcCCCCCC---C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRK---P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~---~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        |.|++|..||....   +  +.+.   .+.+..|..    ..+.+.+.+.+.. .+.+++++.
T Consensus       130 ~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS  193 (320)
T PLN02780        130 GLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS  193 (320)
T ss_pred             CCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence              45589999986421   1  2222   234455544    3444555554443 455666654

>PRK07814 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.069  Score=49.65  Aligned_cols=117  Identities=16%  Similarity=0.157  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---cc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---QA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a-------   93 (358)
                      +.+++.|+||+|++|.+++..|+..+.  +|++.|++..  .....++....  .++.... +-++..   ++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999998886  9999998652  22223332211  1233221 112211   11       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +...|+||..||.....   ..+.   .+.+..|....    +...+.+.+..+.+.+++++.-
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~  148 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST  148 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence            23689999999853211   1222   23344554433    4444444444555667766653

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.20  E-value=0.011  Score=58.99  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..++||+|+||+|.+|..+...|..++. .+|.++..+...++.....+.. ....+.... ..+ .++++++|+|+++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            4667999999999999999999888863 3888887654223221111100 000111011 111 23478999999975


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            3

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.19  E-value=0.017  Score=58.97  Aligned_cols=98  Identities=17%  Similarity=0.247  Sum_probs=58.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC-CCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      +|+|||. |.||.+++..|+..++  +|+.||+++..  ..++.+. .....+.......++.+.++++|+|+++.    
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v----   71 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMV----   71 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEEC----
Confidence            4899997 9999999999999998  89999987522  2223221 00011222211123333556899988875    


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCC
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP  147 (358)
                      +++           +.+.++...+..+ .++.++|-.+|-
T Consensus        72 ~~~-----------~~v~~Vi~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        72 KAG-----------APVDAVINQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             CCc-----------HHHHHHHHHHHhhCCCCCEEEECCCc
Confidence            122           2223333444444 366778878763

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.19  E-value=0.029  Score=55.01  Aligned_cols=35  Identities=20%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            458999998 9999999999999985 6999999874

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.19  E-value=0.022  Score=55.71  Aligned_cols=94  Identities=21%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|||. |.+|+.+|..+...+.  +|..||.........  .. .    ...    .++.+.+++||+|++..
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~~----~~l~ell~~aDiV~l~l  212 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AEY----RPLEELLRESDFVSLHV  212 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CEe----cCHHHHHhhCCEEEEeC
Confidence            345679999997 9999999999987775  899999864221111  11 1    111    24567899999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                        |..+         .+..++.+  +.+....|++++|+++
T Consensus       213 --P~t~---------~T~~~i~~--~~~~~mk~ga~lIN~a  240 (333)
T PRK13243        213 --PLTK---------ETYHMINE--ERLKLMKPTAILVNTA  240 (333)
T ss_pred             --CCCh---------HHhhccCH--HHHhcCCCCeEEEECc
Confidence              2211         12222211  3444456788888874

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.18  E-value=0.074  Score=49.03  Aligned_cols=115  Identities=19%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------c
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a   93 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.+.+..  +....++.+..  .++..+. +-+|   ..+       .
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAE   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  8999998652  22233333221  1222221 1111   111       2


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEee
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +...|++|..+|.....   ..+..   ..+..|+.    +.+.+.+.+.+....+.+++++
T Consensus        84 ~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         84 LGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            34789999999864311   12222   23344443    4455555555444345555553

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.17  E-value=0.03  Score=56.77  Aligned_cols=128  Identities=19%  Similarity=0.311  Sum_probs=76.7

Q ss_pred             eEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           30 KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        30 KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      +|.++|. |..|.+ +|..|...|.  +|..+|..... ...+|....    ++.+.+ .+ .+.++++|+||.+.|+|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEALG----IPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHCc----CEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            5889998 999987 8999998887  89999976533 223344322    333322 22 346788999999999875


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC--CcchHHHHHHHHHhCCCCCCce
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~--d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      ..-. .......+++++.+.-- +.+...+..+|-+|=..  ..+|.+++++++..| +++.-+
T Consensus        71 ~~p~-~~~a~~~~i~v~~~~el-~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~  131 (448)
T TIGR01082        71 DNPE-IVEAKERGIPVIRRAEM-LAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVV  131 (448)
T ss_pred             CCHH-HHHHHHcCCceEeHHHH-HHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEE
Confidence            3211 22223455666543322 21222122344454444  478888888888887 544333

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.16  E-value=0.029  Score=51.73  Aligned_cols=35  Identities=34%  Similarity=0.567  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |.+|+.++..|+..|+ .++.|+|.+.
T Consensus        21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            459999998 9999999999999985 6999999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PLN02712 arogenate dehydrogenase

Probab=96.16  E-value=0.029  Score=59.82  Aligned_cols=71  Identities=20%  Similarity=0.259  Sum_probs=48.6

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-CCCE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDV   99 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDi   99 (358)
                      .|..+.+++||+|||. |.||..++..|...+.  +|+.||.+.....+.++   .    +..+   +++.+.+. ++|+
T Consensus       362 ~~~~~~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~~---~~~~el~~~~aDv  428 (667)
T PLN02712        362 GCVNDGSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSYF---SDADDLCEEHPEV  428 (667)
T ss_pred             hccCCCCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeEe---CCHHHHHhcCCCE
Confidence            4455567789999997 9999999999988775  89999987522222211   1    1222   34445454 5999


Q ss_pred             EEEcC
Q 018314          100 VIIPA  104 (358)
Q Consensus       100 VIi~a  104 (358)
                      ||++.
T Consensus       429 VILav  433 (667)
T PLN02712        429 ILLCT  433 (667)
T ss_pred             EEECC
Confidence            99985

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.16  E-value=0.043  Score=53.20  Aligned_cols=94  Identities=18%  Similarity=0.243  Sum_probs=61.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ...++|+|+|. |.||+.++..|..-+.  +|..||.......       .    +..+....++.+.+++||+|+++.-
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~-------~----~~~~~~~~~l~e~l~~aDvvv~~lP  199 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP-------G----VQSFAGREELSAFLSQTRVLINLLP  199 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC-------C----ceeecccccHHHHHhcCCEEEECCC
Confidence            34579999997 9999999999987666  8999997531100       0    1111112356788999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .    .       ..|..++.  .+.+++..|++++|+++-
T Consensus       200 l----t-------~~T~~li~--~~~l~~mk~ga~lIN~aR  227 (312)
T PRK15469        200 N----T-------PETVGIIN--QQLLEQLPDGAYLLNLAR  227 (312)
T ss_pred             C----C-------HHHHHHhH--HHHHhcCCCCcEEEECCC
Confidence            1    1       13333332  345566668888887753

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=96.16  E-value=0.014  Score=55.90  Aligned_cols=77  Identities=21%  Similarity=0.391  Sum_probs=50.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHH-----------Hh-hcCCCCccEEEEecCCccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAA-----------DV-GHINTRSEVAGYMGNDQLGQA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~-----------dl-~~~~~~~~v~~~~~~~d~~~a   93 (358)
                      ++||+-||| |.||......+++.=+.-++.++|++...  ++--           |. .++. ..++- +  ++|.+.+
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~cr-gknlf-f--stdieka   75 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCR-GKNLF-F--STDIEKA   75 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhc-CCcee-e--ecchHHH
Confidence            469999998 99998876666554333499999997621  1100           01 1111 12333 3  4688999


Q ss_pred             cCCCCEEEEcCCCCCC
Q 018314           94 LEDSDVVIIPAGVPRK  109 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~  109 (358)
                      ++.||+|++....|.|
T Consensus        76 i~eadlvfisvntptk   91 (481)
T KOG2666|consen   76 IKEADLVFISVNTPTK   91 (481)
T ss_pred             hhhcceEEEEecCCcc
Confidence            9999999998877754

>PRK08589 short chain dehydrogenase; Validated

Probab=96.16  E-value=0.1  Score=48.91  Aligned_cols=115  Identities=17%  Similarity=0.227  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|++.+.++ ......++.+..  .++..+. +-+|   ..+       .+.
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999886  899999874 223333443321  1222211 1111   111       123


Q ss_pred             CCCEEEEcCCCCCCC----CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP----GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~----g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|++|..||.....    ..+..   ..+..|+    .+.+.+.+.+.+.  .+.||+++...
T Consensus        82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~~  143 (272)
T PRK08589         82 RVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSFS  143 (272)
T ss_pred             CcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCchh
Confidence            579999999874321    11221   2233343    4445666666543  36677666543

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.15  E-value=0.087  Score=48.20  Aligned_cols=156  Identities=11%  Similarity=0.079  Sum_probs=79.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccC-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALE-------   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~-------   95 (358)
                      +.++|.|+||+|++|+.++..|+..+.  ++++.+.+... ...++.+.. ..++..+. +-   +++.++++       
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~~~~-~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQSED-AAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFG   79 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCCCHH-HHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            345899999999999999999998886  78776544311 111111110 01222221 11   12222232       


Q ss_pred             C-CCEEEEcCCCCC-------CC--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           96 D-SDVVIIPAGVPR-------KP--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        96 ~-aDiVIi~ag~~~-------~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                      . .|++|..+|...       .+  ..+..   +.+..|..    +.+.+.+.+.+. ..+.+++++.....        
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~iss~~~~--------  150 (253)
T PRK08642         80 KPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQ-GFGRIINIGTNLFQ--------  150 (253)
T ss_pred             CCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-CCeEEEEECCcccc--------
Confidence            2 899999987521       11  12222   23445544    444444444433 23566666654311        


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                         .+ .++.-.++.+......+-+.+++.++  +..|++..+
T Consensus       151 ---~~-~~~~~~Y~~sK~a~~~l~~~la~~~~--~~~i~v~~i  187 (253)
T PRK08642        151 ---NP-VVPYHDYTTAKAALLGLTRNLAAELG--PYGITVNMV  187 (253)
T ss_pred             ---CC-CCCccchHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence               11 22233455544444566677777664  445655433

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.062  Score=50.10  Aligned_cols=114  Identities=20%  Similarity=0.181  Sum_probs=64.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------cC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++....  .++.... +..|.   .+.       +.
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999887  8999997652  22223343222  1222211 11221   111       24


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ..|+||..+|.....   ..+.   ...+..|.    .+.+.+.+.+++.. .+.+++++..
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS~  137 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIASM  137 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            689999999864321   1222   22345553    44555666666554 3455555443

>PRK09135 pteridine reductase; Provisional

Probab=96.13  E-value=0.056  Score=49.21  Aligned_cols=104  Identities=22%  Similarity=0.211  Sum_probs=59.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .++|.|+||+|++|++++..|+..+.  +++++|.+.   ......++.+... ..+.... +-+|   ..+++      
T Consensus         6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~   82 (249)
T PRK09135          6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA   82 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998887  899999753   2222233332211 1122211 1112   11222      


Q ss_pred             -CCCCEEEEcCCCCC--CCC-CC---HHHHHHHHHHHHHHHHHHHHh
Q 018314           95 -EDSDVVIIPAGVPR--KPG-MT---RDDLFNINAGIVKDLCSAIAK  134 (358)
Q Consensus        95 -~~aDiVIi~ag~~~--~~g-~~---r~~~~~~N~~i~~~i~~~i~~  134 (358)
                       .+.|+||.++|...  ... .+   -.+.+..|+.-...+.+.+.+
T Consensus        83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~  129 (249)
T PRK09135         83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP  129 (249)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence             35799999998532  111 12   234555666655555555443

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.13  E-value=0.028  Score=51.19  Aligned_cols=117  Identities=18%  Similarity=0.162  Sum_probs=63.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCcccccc---CCCCEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQAL---EDSDVVI  101 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al---~~aDiVI  101 (358)
                      .+.+++.|+||+|.+|..++..++..+.  +|++++.+....  .++.+.....-+..- +...++.+.+   ...|+||
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi   82 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAAL--DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLV   82 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEE
Confidence            3456899999999999999999999887  899999865211  112111000011110 0011122222   3579999


Q ss_pred             EcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh----CCCeEEEEeeC
Q 018314          102 IPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY----CPNAIVNMISN  146 (358)
Q Consensus       102 i~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~----~p~a~iiv~tN  146 (358)
                      ..+|.....   ..+.   ...+..|+.-...+.+.+.+.    +..+.+++++.
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         83 NCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            999864311   1222   223445555444444444432    22355665553

>PRK08223 hypothetical protein; Validated

Probab=96.12  E-value=0.019  Score=54.83  Aligned_cols=36  Identities=22%  Similarity=0.406  Sum_probs=31.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |++|+.++..|+..|+ .+|.|+|-+.
T Consensus        26 ~~s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         26 RNSRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            3458999998 9999999999999996 5999999874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.12  E-value=0.11  Score=47.64  Aligned_cols=117  Identities=21%  Similarity=0.253  Sum_probs=66.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC--c----------c
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND--Q----------L   90 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~--d----------~   90 (358)
                      .+.++|.|+||+|++|..++..|+..+.  +|+++|++.  ......++.+... .++.... +-+  +          +
T Consensus        10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   86 (247)
T PRK08945         10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTI   86 (247)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHH
Confidence            3566899999999999999999998876  899999875  2233344443221 1122111 000  1          1


Q ss_pred             ccccCCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           91 GQALEDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .+.+...|+||..||....  +  ..+.   ...+..|..-    .+.+.+.+.+. +...+++++.
T Consensus        87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss  152 (247)
T PRK08945         87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSS  152 (247)
T ss_pred             HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence            2233468999999986321  1  2222   2345556554    34444444433 3445555554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.12  E-value=0.035  Score=51.14  Aligned_cols=118  Identities=12%  Similarity=0.137  Sum_probs=67.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---cccccc-----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQAL-----   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al-----   94 (358)
                      .+.++|.|+||+|.+|..++..|+..+.  .|+++|.++  ......++....  .++.... +-+   ++.+++     
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   84 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDA   84 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999998886  899999875  223333343221  1122211 111   222222     


Q ss_pred             --CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHH----HHHHhhCCCeEEEEeeCCC
Q 018314           95 --EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLC----SAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~----~~i~~~~p~a~iiv~tNP~  148 (358)
                        ...|+||.++|.... +  ..+.   ...+..|..-...+.    +.+.+.. .+.+++++...
T Consensus        85 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~  149 (256)
T PRK06124         85 EHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG-YGRIIAITSIA  149 (256)
T ss_pred             hcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEeech
Confidence              345899999986321 1  1222   223555655444444    4444333 45666666654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.12  E-value=0.015  Score=52.02  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=48.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi  102 (358)
                      +.+++.|+||+|.+|..++..|+..+.  ++++++++..  .....++.+.. ...+....  ...++.++++++|+||.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi~  103 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVFA  103 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEEE
Confidence            456999999889999999999988775  8999987652  22222332111 12233221  11233477899998888


Q ss_pred             cCC
Q 018314          103 PAG  105 (358)
Q Consensus       103 ~ag  105 (358)
                      +..
T Consensus       104 at~  106 (194)
T cd01078         104 AGA  106 (194)
T ss_pred             CCC
Confidence            653

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.12  E-value=0.048  Score=49.59  Aligned_cols=114  Identities=24%  Similarity=0.337  Sum_probs=63.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------cc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------AL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al   94 (358)
                      .+++.|+||+|.+|..++..|+..+.  .+++.+.+..  .....++.     .++..+. +-+|   +.+       .+
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998886  7888876542  22222221     1222211 1111   111       13


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~  148 (358)
                      ...|+||.++|.....   ..+   -...+..|+.....+++.+.+.   .+.+.+++++...
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            4689999999864311   111   2234555655544444433221   2345666666543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.12  E-value=0.047  Score=50.13  Aligned_cols=96  Identities=22%  Similarity=0.302  Sum_probs=67.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      +||+|||+ |.+|..+.-.+-..+ .+.-+.+||.+..+..  .+...-.....      .++.+.+.+.|+||.+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~--~~~~~~~~~~~------s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAK--ELEASVGRRCV------SDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHH--HHHhhcCCCcc------ccHHHHhhccceeeeeCC--
Confidence            58999998 999999988877664 3556778887653322  23322111111      245566799999999985  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                    .+.+++++.++=+.+.|.+++.++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          5678999999999999988776655554

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.10  E-value=0.019  Score=55.06  Aligned_cols=63  Identities=22%  Similarity=0.352  Sum_probs=45.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||. |.||..++..|...++  ++..||+++.   ..++....    ....   .+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~~---~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVSV---ETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Ceec---CCHHHHHhcCCEEEEeC
Confidence            48999997 9999999999999887  8889998652   12232211    1111   23456789999999985

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.10  E-value=0.031  Score=52.43  Aligned_cols=124  Identities=19%  Similarity=0.283  Sum_probs=79.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC---------CcEEEEEecCCc--H------HHHHHhhcCCCCccEEEEecCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIANT--P------GVAADVGHINTRSEVAGYMGND   88 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~~--~------~~~~dl~~~~~~~~v~~~~~~~   88 (358)
                      -+..||.|.|| |..|..++.+|.....         -..++++|..-.  .      .....+.+.. +..    ....
T Consensus        23 l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~-~~~----~~~~   96 (254)
T cd00762          23 ISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFA-NPE----RESG   96 (254)
T ss_pred             hhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHc-Ccc----cccC
Confidence            34459999998 9999999887766432         138999998641  0      1111111011 101    0125


Q ss_pred             ccccccC--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCC
Q 018314           89 QLGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGT  164 (358)
Q Consensus        89 d~~~al~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~  164 (358)
                      |+.++++  ++|++|=+.+.|   |           -+-+++.+.|.+++++.+|+-.|||..  -.++  .++++.+  
T Consensus        97 ~L~eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp--e~a~~~t--  158 (254)
T cd00762          97 DLEDAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA--EEAYTAT--  158 (254)
T ss_pred             CHHHHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH--HHHHhhc--
Confidence            7889999  999988876544   2           134677888888999999998999986  3433  2335443  


Q ss_pred             CCCCceEeec
Q 018314          165 YNEKKLFGVT  174 (358)
Q Consensus       165 ~~~~kviG~t  174 (358)
                       +.+.+++..
T Consensus       159 -~G~ai~AtG  167 (254)
T cd00762         159 -EGRAIFASG  167 (254)
T ss_pred             -CCCEEEEEC
Confidence             135788884

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.10  E-value=0.015  Score=56.67  Aligned_cols=93  Identities=17%  Similarity=0.200  Sum_probs=58.7

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      +-..+|=+-.+.+.++++.+ ...+++|||+ |..+...+..+.....+.+|.+|+++.  +...+.++.+.. ...+..
T Consensus       108 lT~~RTaa~~~laa~~la~~-~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~  184 (326)
T TIGR02992       108 LTDVRTAAAGAVAARHLARE-DSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA  184 (326)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE
Confidence            33444444444444444333 3468999998 999988888776444467999999876  334444453221 123333


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                         .+++++++.+||+||.+-
T Consensus       185 ---~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       185 ---ATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             ---eCCHHHHhccCCEEEEec
Confidence               246678899999999864

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.09  E-value=0.035  Score=51.86  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||+|+|+ |++|+.++..|+..|+ .+|.++|.+.
T Consensus        31 ~~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            3569999998 9999999999999985 6999999864

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.07  Score=49.33  Aligned_cols=116  Identities=16%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------cC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++....  .++..+. +-.|.   .++       +.
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999988886  8999998752  22233343322  2333222 11221   111       23


Q ss_pred             CCCEEEEcCCCCCCC---CC-CH---HHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP---GM-TR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~-~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tNP~  148 (358)
                      +.|+||.++|.....   .. +.   ...+..|..-...+.+.+.++-  ..+.+++++...
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence            679999999864321   11 22   2234555555444444443321  235566665544

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.08  E-value=0.014  Score=57.05  Aligned_cols=66  Identities=30%  Similarity=0.401  Sum_probs=46.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||. |.+|..++..|+. ++.-+|+.||.......    ..     .+..   .+++.+++++||+|+++.
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~-~~g~~V~~~d~~~~~~~----~~-----~~~~---~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        143 SIKDLKVAVIGT-GRIGLAVAKIFAK-GYGSDVVAYDPFPNAKA----AT-----YVDY---KDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCccHhH----Hh-----hccc---cCCHHHHHHhCCEEEEeC
Confidence            345679999998 9999999998853 44448999997642211    11     1121   235678899999999985

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=96.07  E-value=0.035  Score=54.19  Aligned_cols=66  Identities=18%  Similarity=0.176  Sum_probs=45.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.+||+|||. |.+|.+++..|...+.  +|+.++.+....... .....    +..    .+..+++++||+|+++.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~~-A~~~G----~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWKK-AEADG----FEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHHH-HHHCC----Cee----CCHHHHHhcCCEEEEcC
Confidence            4569999998 9999999999998887  888887654211111 11111    121    13467899999999985

>PRK06101 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.12  Score=47.22  Aligned_cols=112  Identities=19%  Similarity=0.188  Sum_probs=62.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCC----CCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED----SDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~----aDiV  100 (358)
                      .+|.|+||+|++|..++..|+..+.  +|++.|+++...  .++.+...  ++..+.    ..+++.++++.    -|.+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~d~~   75 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSA--NIFTLAFDVTDHPGTKAALSQLPFIPELW   75 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcC--CCeEEEeeCCCHHHHHHHHHhcccCCCEE
Confidence            5799999999999999999998886  899999865211  11111110  111111    11222223332    4788


Q ss_pred             EEcCCCCCCC--C-CCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314          101 IIPAGVPRKP--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~--g-~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                      |+.+|.....  . .+.   .+.+.-|..-...+.+.+..+- +...+++++.
T Consensus        76 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         76 IFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             EEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            8888743211  1 222   2346667666666666555432 3345565554

>PRK05855 short chain dehydrogenase; Validated

Probab=96.06  E-value=0.079  Score=54.62  Aligned_cols=118  Identities=16%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+..  ...+.++.....  ++..+. +-+|.   .+.       
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~  389 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVRAE  389 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999887  8999998752  222333332211  222221 11221   111       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +...|++|..||.....   ..+.   ...+..|    +...+.+.+.+.+....+.||++|.-.
T Consensus       390 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~  454 (582)
T PRK05855        390 HGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAA  454 (582)
T ss_pred             cCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence            23579999999974321   1222   2234455    345566666676666566677665543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.06  E-value=0.05  Score=50.12  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|++|..++..|+..+.  ++++.|.+.
T Consensus         9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~   43 (254)
T PRK08085          9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA   43 (254)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence            45899999999999999999998886  899999875

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.06  E-value=0.013  Score=58.25  Aligned_cols=95  Identities=18%  Similarity=0.233  Sum_probs=63.6

Q ss_pred             hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC--cHHHHHHhhcCCCC-cc
Q 018314            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTR-SE   80 (358)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~   80 (358)
                      .|-.++|-|--+-+-++++.+ ....++|||+ |..+.+-+..++. .+.+.+|.+||++.  +...+.++.+.... ..
T Consensus       133 ~lTa~RTaA~salaa~~LAr~-da~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~  210 (379)
T PRK06199        133 LLSAYRTGAVPGVGARHLARK-DSKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITN  210 (379)
T ss_pred             chhhhHHHHHHHHHHHHhccC-CCCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCce
Confidence            344555655555555666544 4568999997 9888877776665 44478999999987  34555566543211 13


Q ss_pred             EEEEecCCccccccCCCCEEEEcC
Q 018314           81 VAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        81 v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +...   ++.++++++||+|+.+-
T Consensus       211 v~~~---~s~~eav~~ADIVvtaT  231 (379)
T PRK06199        211 VEVV---DSIEEVVRGSDIVTYCN  231 (379)
T ss_pred             EEEe---CCHHHHHcCCCEEEEcc
Confidence            5543   45689999999998753

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.15  Score=49.58  Aligned_cols=115  Identities=14%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.+.++  ......++....  .++.... +-+|   .+++       
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~   82 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE   82 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999886  899999865  222333343222  1222211 1122   2122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...|++|..+|.....   ..+..   ..+..|    +...+.+.+.+.+.. .+.+|+++.
T Consensus        83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            23689999999863211   12221   223333    445566666666543 355665554

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.05  E-value=0.097  Score=47.66  Aligned_cols=116  Identities=16%  Similarity=0.249  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|++.+++..  .....++....  .++.... +-+|   +.+++       
T Consensus         7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (239)
T PRK07666          7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999998887  8999998752  22223343211  2333322 1111   12222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .+.|+||.++|.....   +.+.   ...+..|..-    .+.+.+.+.+.. .+.+++++...
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~ss~~  145 (239)
T PRK07666         83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ-SGDIINISSTA  145 (239)
T ss_pred             CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEEcchh
Confidence            3789999999864321   1221   2334555543    344444443333 34455555543

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.05  E-value=0.031  Score=52.30  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|.+++..|...++ ..++.++|.+...  ..++.+..  ..+..+   +|..+.+++||+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence            58999997 9999999999888764 3467788875422  22222211  012222   23456678999999986

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.11  Score=47.84  Aligned_cols=157  Identities=15%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.+.++  ......++.+..  .++..+. +-.|   ..+.       
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVER   80 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999887  899999865  222333443322  1222221 1111   1111       


Q ss_pred             cCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           94 LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        94 l~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      +...|++|..||...  .+  ..+.   ...+..|..    ..+.+.+.+.+.. .+.+++++......          .
T Consensus        81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~~----------~  149 (254)
T PRK07478         81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGHT----------A  149 (254)
T ss_pred             cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhhc----------c
Confidence            236799999998632  22  2222   234556653    5555566665543 34556555432110          1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-..+++.++  +..|++..+
T Consensus       150 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        150 G-FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             C-CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            1 33333344443323445566666653  445655444

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.04  E-value=0.04  Score=55.71  Aligned_cols=126  Identities=24%  Similarity=0.322  Sum_probs=76.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +.++|.|+|+ |.+|..+|..|+..|.  +|+++|.+...   ....+|....    ++.+.+. ...+...++|+||.+
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~~----~~~~~~~-~~~~~~~~~d~vv~~   75 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGELG----IELVLGE-YPEEFLEGVDLVVVS   75 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC----CEEEeCC-cchhHhhcCCEEEEC
Confidence            3468999998 8899999999999997  89999997522   1123332211    2222211 112446789999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      +|.+...- .....-..+++++...+...+...  ..+|-+|=.++  .++.+++++++..|
T Consensus        76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~~--~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFSK--APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhcC--CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            88742211 111222356777766665444332  34555655554  67777777777665

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.03  E-value=0.1  Score=47.38  Aligned_cols=35  Identities=31%  Similarity=0.548  Sum_probs=29.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~   64 (358)
                      +++|.|+||+|.+|..++..|+..+.  ++++. +.+.
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~   40 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE   40 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            45899999999999999999988876  77777 8765

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.02  E-value=0.055  Score=55.09  Aligned_cols=125  Identities=18%  Similarity=0.293  Sum_probs=76.1

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +.+||.|+|. |..|.+ +|..|...|.  +|...|.+... ...+|....    +..+.+. + .+.+.++|+||.+.|
T Consensus         6 ~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~~~-~-~~~~~~~d~vv~spg   75 (461)
T PRK00421          6 RIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLELG----AIIFIGH-D-AENIKDADVVVYSSA   75 (461)
T ss_pred             CCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHCC----CEEeCCC-C-HHHCCCCCEEEECCC
Confidence            3458999998 999998 7889998887  89999987532 222354322    2222222 2 356789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      +|...-. ......++++++.+.-- +.+..++..+|-+|=..+  .+|.+++++++..|
T Consensus        76 i~~~~~~-~~~a~~~~i~i~~~~e~-~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         76 IPDDNPE-LVAARELGIPVVRRAEM-LAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             CCCCCHH-HHHHHHCCCcEEeHHHH-HHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            8753221 12223455666543222 111211223455554444  78888888888877

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.085  Score=50.28  Aligned_cols=118  Identities=20%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cc-------c
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------A   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a   93 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.+++..  .....++.......++..+. +-.|.   .+       .
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            346899999999999999999999886  8999987652  11222332111111233221 11121   11       1


Q ss_pred             cCCCCEEEEcCCCCCCC-C---CCHHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP-G---MTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~-g---~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +...|+||..||....+ .   ..-...+..|..    +.+.+.+.+++.. .+.+|+++..
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS~  153 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSSG  153 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECCH
Confidence            23589999999863211 1   111223444443    4666777766543 3456666543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.02  E-value=0.072  Score=48.54  Aligned_cols=114  Identities=21%  Similarity=0.251  Sum_probs=64.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al-------   94 (358)
                      +++|.|+||+|.+|..++..|..++.  +|++++++..  .....++....  .++..+.. -.|   +.+.+       
T Consensus         6 ~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (251)
T PRK12826          6 GRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDF   81 (251)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999886  8999998742  22222333221  12333221 111   11222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHH----HHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCS----AIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~----~i~~~~p~a~iiv~tN  146 (358)
                      ...|+||.++|.... +  ..+.   .+.+..|+.-...+.+    .+.+..+ ..+++++.
T Consensus        82 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~ss  142 (251)
T PRK12826         82 GRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTSS  142 (251)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEec
Confidence            368999999876431 1  2222   2335555554444444    4444443 44554543

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.26  Score=45.95  Aligned_cols=117  Identities=11%  Similarity=0.159  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---cccccc------C
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQAL------E   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al------~   95 (358)
                      .+.+.|+||+|.+|..++..|+..+.  +|++.|++.  ......++.... ..++..+. +-+   +..+.+      .
T Consensus         8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g   84 (263)
T PRK08339          8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG   84 (263)
T ss_pred             CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence            44789999999999999999999887  899999875  222233333211 11222221 111   222222      3


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|++|..+|.+...   ..+..   ..+..|    ..+.+.+.+.+++.. .+.||+++...
T Consensus        85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~~  146 (263)
T PRK08339         85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSVA  146 (263)
T ss_pred             CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCcc
Confidence            579999999865321   12222   223334    455677777776543 45666665543

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.037  Score=51.06  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|++|.+++..++..+.  +|+++|.+.
T Consensus         7 ~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~   41 (255)
T PRK06057          7 GRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP   41 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            45899999999999999999998886  899999865

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.99  E-value=0.063  Score=54.95  Aligned_cols=125  Identities=16%  Similarity=0.178  Sum_probs=78.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHh-hcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV-GHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl-~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ++||.|+|+ |..|.+++..|...+.  +|..+|.+....  .++ ...    .++.+.+..+ .+.+.++|+||.+.|+
T Consensus        15 ~~~v~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~--~~~l~~~----gi~~~~~~~~-~~~~~~~d~vV~Spgi   84 (473)
T PRK00141         15 SGRVLVAGA-GVSGRGIAAMLSELGC--DVVVADDNETAR--HKLIEVT----GVADISTAEA-SDQLDSFSLVVTSPGW   84 (473)
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCChHHH--HHHHHhc----CcEEEeCCCc-hhHhcCCCEEEeCCCC
Confidence            348999997 9999999999998887  899999654221  122 221    2333322222 3457899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~-----~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      |...-. .......+++++.++.-....     +.....+|-+|=.++  .++.+++++++..|
T Consensus        85 ~~~~p~-~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g  147 (473)
T PRK00141         85 RPDSPL-LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGG  147 (473)
T ss_pred             CCCCHH-HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcC
Confidence            753321 223335667777666643332     221223555655555  78888888888877

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.99  E-value=0.011  Score=57.89  Aligned_cols=75  Identities=23%  Similarity=0.328  Sum_probs=50.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      |+.+.+||+|+||+|.+|..+...|...+.  ..+|.++......|+...+...    .+....  .| .++++++|+|+
T Consensus         1 ~~~~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf   73 (347)
T PRK06728          1 MSEKGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAF   73 (347)
T ss_pred             CCCCCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEE
Confidence            345668999999999999999999986553  4568888766544444433321    233321  23 24578999999


Q ss_pred             EcCC
Q 018314          102 IPAG  105 (358)
Q Consensus       102 i~ag  105 (358)
                      ++++
T Consensus        74 ~a~~   77 (347)
T PRK06728         74 FSAG   77 (347)
T ss_pred             ECCC
Confidence            9764

>PRK08818 prephenate dehydrogenase; Provisional

Probab=95.98  E-value=0.036  Score=54.94  Aligned_cols=56  Identities=25%  Similarity=0.287  Sum_probs=42.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++|+|||.+|.+|..++..|.... ..+|+-+|..          |..          ..++.+.+++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeC
Confidence            4699999977999999999998752 3489999863          100          123456789999999985

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.97  E-value=0.12  Score=47.21  Aligned_cols=36  Identities=31%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|.+|+.++..|+..+.  +|++++.+.
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~   39 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA   39 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence            456899999999999999999998886  899999765

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.96  E-value=0.12  Score=47.76  Aligned_cols=114  Identities=22%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (358)
                      .+++.|+||+|++|.+++..|+..+.  +|+++|+++. .....++....  .++.... +-+|   ..+.       +.
T Consensus         8 ~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          8 GKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSELVHEVAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCchHHHHHHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999886  8999998652 22222332211  1222111 1112   1111       24


Q ss_pred             CCCEEEEcCCCCC--CC--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 DSDVVIIPAGVPR--KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..|++|..||...  .+  ..+..   ..+..|+    .+.+.+.+.+.+... +.|++++.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~iv~~sS  144 (260)
T PRK12823         84 RIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGG-GAIVNVSS  144 (260)
T ss_pred             CCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEcC
Confidence            6799999998531  11  12222   2233443    345566666665443 45555544

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.94  E-value=0.041  Score=51.11  Aligned_cols=36  Identities=25%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~   39 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA   39 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            356899999999999999999999887  899999765

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.94  E-value=0.079  Score=50.97  Aligned_cols=115  Identities=13%  Similarity=0.091  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      ++++|.|+||+|++|..++..|+..+.  +|++.+.+..  .....++....  .++.... +-.|   ..+++      
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIPP--DSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhccC--CceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999998885  8999997652  22233332111  1232221 1112   12222      


Q ss_pred             -CCCCEEEEcCCCCCC----CCCCH---HHHHHHHHH----HHHHHHHHHHhhCC-CeEEEEee
Q 018314           95 -EDSDVVIIPAGVPRK----PGMTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMIS  145 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~----~g~~r---~~~~~~N~~----i~~~i~~~i~~~~p-~a~iiv~t  145 (358)
                       ...|++|..||....    ...+.   ...+..|.-    +.+.+.+.+.+... .+.||+++
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence             248999999985321    12222   233455553    45555666655442 34566554

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.93  E-value=0.14  Score=46.86  Aligned_cols=35  Identities=37%  Similarity=0.490  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|+++|.++
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~   40 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINA   40 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998886  899999875

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=95.93  E-value=0.015  Score=56.73  Aligned_cols=95  Identities=21%  Similarity=0.296  Sum_probs=68.4

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v   81 (358)
                      ..|-+++|-|-.+-+-+++... ...-++|||+ |..+..-+..+...-.+.+|.+||+++  .+..+.++..... ..+
T Consensus       107 ~~lTa~RTaAasavAa~~LA~~-da~~laiIGa-G~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~-~~v  183 (330)
T COG2423         107 TRLTALRTAAASAVAAKYLARK-DASTLAIIGA-GAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGG-EAV  183 (330)
T ss_pred             ccHHHHHHHHHHHHHHHHhccC-CCcEEEEECC-cHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcC-ccc
Confidence            3456677777777777777775 3458999998 988888777777665578999999987  4455556654432 234


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..   .++.++++++||+|+.+-
T Consensus       184 ~a---~~s~~~av~~aDiIvt~T  203 (330)
T COG2423         184 GA---ADSAEEAVEGADIVVTAT  203 (330)
T ss_pred             ee---ccCHHHHhhcCCEEEEec
Confidence            43   245689999999999863

>PRK07574 formate dehydrogenase; Provisional

Probab=95.92  E-value=0.05  Score=54.27  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -..++|+|||. |.||+.++..|..-+.  +|+-||+........  ...    .+..+   .++++.++.||+|++..-
T Consensus       190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~--~~~----g~~~~---~~l~ell~~aDvV~l~lP  257 (385)
T PRK07574        190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE--QEL----GLTYH---VSFDSLVSVCDVVTIHCP  257 (385)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH--hhc----Cceec---CCHHHHhhcCCEEEEcCC
Confidence            45679999998 9999999999886665  899999864211111  010    12221   346788999999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ..           ..+..++-  .+.+....|.+++|+++
T Consensus       258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a  284 (385)
T PRK07574        258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTA  284 (385)
T ss_pred             CC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence            11           12222221  24445556788888774

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=95.92  E-value=0.11  Score=47.51  Aligned_cols=75  Identities=20%  Similarity=0.301  Sum_probs=48.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~   95 (358)
                      ++|.|+||+|.+|+.++..|...+.  +|++++++..  .....++....  .++.... +-.|          ..+.+.
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFG   77 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999998887  8999998752  11222222211  1222221 1122          122356


Q ss_pred             CCCEEEEcCCCC
Q 018314           96 DSDVVIIPAGVP  107 (358)
Q Consensus        96 ~aDiVIi~ag~~  107 (358)
                      +.|+||..+|..
T Consensus        78 ~~d~vi~~a~~~   89 (255)
T TIGR01963        78 GLDILVNNAGIQ   89 (255)
T ss_pred             CCCEEEECCCCC
Confidence            789999999863

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK06398 aldose dehydrogenase; Validated

Probab=95.89  E-value=0.077  Score=49.27  Aligned_cols=149  Identities=17%  Similarity=0.199  Sum_probs=79.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccc-------cccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLG-------QALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~-------~al~~aDiV  100 (358)
                      .+++.|+||+|.+|.+++..|+..+.  +|++.|.++..........+    ++.   ..++..       +.+...|++
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----D~~---~~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKV----DVS---NKEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEc----cCC---CHHHHHHHHHHHHHHcCCCCEE
Confidence            45899999999999999999999887  89999876521100000000    000   001111       123468999


Q ss_pred             EEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314          101 IIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus       101 Ii~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      |..||.+.. +  ..+..   ..+..|..    +.+.+.+.+.+. ..+.+|+++.-..           ..+ .+..-.
T Consensus        77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~~-~~~~~~  143 (258)
T PRK06398         77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQS-----------FAV-TRNAAA  143 (258)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchh-----------ccC-CCCCch
Confidence            999986431 1  12222   23445544    445555555543 3456665554221           111 233334


Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ++.+......+-+.++..++  +. |++..+
T Consensus       144 Y~~sKaal~~~~~~la~e~~--~~-i~vn~i  171 (258)
T PRK06398        144 YVTSKHAVLGLTRSIAVDYA--PT-IRCVAV  171 (258)
T ss_pred             hhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence            44433223345566666664  33 665555

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.88  E-value=0.039  Score=54.63  Aligned_cols=72  Identities=22%  Similarity=0.237  Sum_probs=45.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLN-PL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||+|+||+|.||..+...+... .+ ..+++++......+...++...    ...... ..| .+.++++|+|+++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence            479999999999999999755554 44 4678887764322222233321    112221 122 245789999999875

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.2  Score=46.16  Aligned_cols=117  Identities=12%  Similarity=0.199  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcE-EEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a------   93 (358)
                      +.++|.|+||+|++|..++..|+..+.  + |+++|.+..  .....++....  .++..+. +-+|.   .+.      
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   80 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEALG--AKAVFVQADLSDVEDCRRVVAAADE   80 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998875  5 999998652  22222332211  2232221 11221   111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       +.+.|+||.++|.....   +.+..   ..+..|+.    +++...+.+.+....+.+++++.-
T Consensus        81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~  145 (260)
T PRK06198         81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSM  145 (260)
T ss_pred             HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence             23689999999865322   22222   22445543    334445555544334556655543

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=95.87  E-value=0.053  Score=48.96  Aligned_cols=35  Identities=26%  Similarity=0.443  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|-+.
T Consensus        19 ~s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          19 SAKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             hCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            459999998 8899999999999996 5899999763

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.87  E-value=0.47  Score=43.94  Aligned_cols=35  Identities=14%  Similarity=0.314  Sum_probs=29.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +.++|.|+||++++|..++..|+..+.  .|++.+.+
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~   41 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYNS   41 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCC
Confidence            345899999999999999999999887  78877543

>PRK12742 oxidoreductase; Provisional

Probab=95.87  E-value=0.1  Score=47.30  Aligned_cols=34  Identities=24%  Similarity=0.346  Sum_probs=29.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      .++|.|+||+|.+|..++..|+..+.  ++++.+.+
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~   39 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG   39 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence            45899999999999999999998886  78777654

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=95.86  E-value=0.062  Score=50.79  Aligned_cols=68  Identities=19%  Similarity=0.241  Sum_probs=43.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++||+|||+ |.+|..++..+...+ ...-+.++|.+...  +.++.+..   ....+   +|+++.+.++|+|++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~--a~~~a~~~---~~~~~---~~~~ell~~~DvVvi~a   69 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEK--AENLASKT---GAKAC---LSIDELVEDVDLVVECA   69 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHH--HHHHHHhc---CCeeE---CCHHHHhcCCCEEEEcC
Confidence            479999997 999999998887754 22235678876522  22222211   12222   34556668999999997

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.15  Score=46.32  Aligned_cols=117  Identities=20%  Similarity=0.310  Sum_probs=65.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c----HHHHHHhhcCCCCccEEEEe-cCCc---ccccc---
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---   94 (358)
                      +++|.|+||+|++|..++..|+..+.  ++++++...  .    .....++....  .++.... +-.|   +.+.+   
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~   81 (249)
T PRK12827          6 SRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDAG   81 (249)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHH
Confidence            46899999999999999999999887  888887642  1    11112222211  1222221 1111   11222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHH-h---hCCCeEEEEeeCCC
Q 018314           95 ----EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIA-K---YCPNAIVNMISNPV  148 (358)
Q Consensus        95 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~-~---~~p~a~iiv~tNP~  148 (358)
                          ...|+||..+|.....   ..+.   ...+..|..-...+.+.+. .   ......+++++...
T Consensus        82 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~  149 (249)
T PRK12827         82 VEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVA  149 (249)
T ss_pred             HHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCch
Confidence                4689999999864311   1222   2345667776666666665 1   12224455555443

>PRK06841 short chain dehydrogenase; Provisional

Probab=95.84  E-value=0.08  Score=48.64  Aligned_cols=36  Identities=33%  Similarity=0.501  Sum_probs=31.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.+.+.
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~   49 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSE   49 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            456899999999999999999999886  899999865

>PRK06701 short chain dehydrogenase; Provisional

Probab=95.83  E-value=0.078  Score=50.39  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      .+.++|.|+||+|.+|+.++..|+..+.  +|++++.++.   ......+....  .++..+. +-.|   +.+.+    
T Consensus        44 ~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~  119 (290)
T PRK06701         44 LKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETV  119 (290)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHH
Confidence            3456899999999999999999998886  8999988652   22222232211  1222221 1111   11222    


Q ss_pred             ---CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCC
Q 018314           95 ---EDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNP  147 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP  147 (358)
                         ...|+||..||...  .+  ..+.   ...+..|+.-...+.+.+.++ .+.+.+|+++.-
T Consensus       120 ~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        120 RELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             HHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence               35799999998632  11  1222   344667766666666666553 344566666554

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.3  Score=44.89  Aligned_cols=114  Identities=10%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~   95 (358)
                      +++.|+||+|.+|..++..|+..+.  .|++.|.+.  ......++....  .++..+. +-+|   ..+       .+.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999998887  899999865  222223333221  1233221 1112   111       124


Q ss_pred             CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 DSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 ~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..|+||..+|.... +  ..+.   ...+..|..    +.+.+.+.+.+....+.++++|.
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS  138 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVA  138 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcC
Confidence            67999999875321 1  2232   223444543    44555555444444566776653

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.78  E-value=0.52  Score=43.56  Aligned_cols=116  Identities=15%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCccc---cc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQLG---QA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d~~---~a------   93 (358)
                      +.+++.|+||+|.+|..++..|+..+.  .+++...++.   .....++.+..  .++..+. +-+|..   +.      
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999886  6777766431   22223333221  1222211 112211   11      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       +...|++|..+|.....   ..+..   ..+..|+    .+.+.+.+.+.+....+.+++++.
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             23579999999864321   12222   2345553    334556666666555566666654

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.098  Score=47.67  Aligned_cols=116  Identities=19%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (358)
                      +++++.|+||+|.+|..++..|+.++.  +|+++|.++.  .....++....  .++.... +-+|.   ..++      
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ   80 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            355899999999999999999999887  8999998652  22222222211  1222221 11221   1222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|+||.++|.....   ..+   -...+..|+.    +.+.+.+.+.+.. .+.+++++..
T Consensus        81 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~  143 (241)
T PRK07454         81 FGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSSI  143 (241)
T ss_pred             cCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEccH
Confidence             3589999999864321   122   1233445544    4445555555433 3455655543

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.77  E-value=0.025  Score=51.71  Aligned_cols=93  Identities=17%  Similarity=0.123  Sum_probs=58.9

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcCCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |+|+||+|.+|+.++..|...++  +|..+=++........|.+...  .+-...  +.+++.++++|+|.|+++-+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~--~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA--EVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT--EEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc--eEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            78999999999999999988665  6777766653334444554331  221111  12456678999999999765432


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                         .       ...+..+.+++...+.+-
T Consensus        77 ---~-------~~~~~~~~li~Aa~~agV   95 (233)
T PF05368_consen   77 ---P-------SELEQQKNLIDAAKAAGV   95 (233)
T ss_dssp             ---C-------CHHHHHHHHHHHHHHHT-
T ss_pred             ---h-------hhhhhhhhHHHhhhcccc
Confidence               1       224445566666666663

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK09134 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.12  Score=47.78  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=29.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++++.|+||+|++|..++..|+..+.  ++++.+...
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~   43 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRS   43 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCC
Confidence            456899999999999999999998886  777776543

>PRK09186 flagellin modification protein A; Provisional

Probab=95.77  E-value=0.21  Score=45.84  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++.+.+.
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~   38 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK   38 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence            45899999999999999999999887  899998765

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.76  E-value=0.049  Score=58.70  Aligned_cols=67  Identities=22%  Similarity=0.388  Sum_probs=46.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .||+|||+ |.+|..++..+...++..+|+.+|.++.. ..+.++   ..  ....   .+++.++++++|+||++.
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~---g~--~~~~---~~~~~~~~~~aDvVilav   71 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSL---GV--IDRG---EEDLAEAVSGADVIVLAV   71 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHC---CC--CCcc---cCCHHHHhcCCCEEEECC
Confidence            58999997 99999999999988754479999987622 222221   11  1111   234556789999999986

>PRK06139 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.11  Score=50.58  Aligned_cols=115  Identities=19%  Similarity=0.121  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.+.++  .+....++....  .++.... +-+|   .++.       
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~   81 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF   81 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence            446899999999999999999999987  899999875  222333343222  1222211 1122   1111       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...|++|..||.....   ..+.   .+.+..|.-    ..+.+.+.+.+.. .+.+|+++.
T Consensus        82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            24679999999864321   1121   223444433    3455555555543 455665543

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=95.75  E-value=0.059  Score=52.27  Aligned_cols=65  Identities=15%  Similarity=0.188  Sum_probs=43.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+||+|||+ |++|.+++..|...+.  +++.++....... ..+....    +..    .+..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~----~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV----GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE----CCHHHHHhcCCEEEEeC
Confidence            468999998 9999999999998886  6666554432111 1111111    222    12356789999999986

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK05993 short chain dehydrogenase; Provisional

Probab=95.75  E-value=0.063  Score=50.41  Aligned_cols=109  Identities=12%  Similarity=0.110  Sum_probs=63.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc--------CC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--------ED   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--------~~   96 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.+.+....  .++....    +.... +-+|   ..+++        ..
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~----~~~~~~Dl~d~~~~~~~~~~~~~~~~g~   76 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEG----LEAFQLDYAEPESIAALVAQVLELSGGR   76 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCC----ceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  899999865211  1222211    11110 1111   11122        24


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .|+||..||.....   +.+.   ...+..|..-    .+.+.+.+++... +.||++|.
T Consensus        77 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS  135 (277)
T PRK05993         77 LDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS  135 (277)
T ss_pred             ccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence            69999999864321   1222   2345566544    5667777766543 45565554

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.1  Score=48.03  Aligned_cols=34  Identities=44%  Similarity=0.497  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +++.|+||+|.+|..++..|+..+.  +|+++|.+.
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~   36 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA   36 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            4799999999999999999998876  899999765

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.74  E-value=0.035  Score=53.14  Aligned_cols=96  Identities=18%  Similarity=0.216  Sum_probs=60.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ...+|+|+|+ |.+|..++..|...+.  +|.++|++....  ........ ..+.    ..++.+.++++|+||.+...
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~--~~~~~~g~-~~~~----~~~l~~~l~~aDiVint~P~  219 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADL--ARITEMGL-IPFP----LNKLEEKVAEIDIVINTIPA  219 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHCCC-eeec----HHHHHHHhccCCEEEECCCh
Confidence            4569999998 9999999999988775  899999865211  11111111 0111    13456778999999998521


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCCCc
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNS  150 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~d~  150 (358)
                      +         ++  +    .   ..++...|++++|.+ ++|-.+
T Consensus       220 ~---------ii--~----~---~~l~~~k~~aliIDlas~Pg~t  246 (287)
T TIGR02853       220 L---------VL--T----A---DVLSKLPKHAVIIDLASKPGGT  246 (287)
T ss_pred             H---------Hh--C----H---HHHhcCCCCeEEEEeCcCCCCC
Confidence            1         01  1    1   223444567877765 778654

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.18  Score=46.30  Aligned_cols=35  Identities=23%  Similarity=0.284  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++.|.++
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~   39 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTA   39 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCH
Confidence            45899999999999999999999887  899999865

>PRK06196 oxidoreductase; Provisional

Probab=95.73  E-value=0.069  Score=51.26  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=64.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCC-CccEEEEecCCccc-------cccCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYMGNDQLG-------QALEDS   97 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~-~~~v~~~~~~~d~~-------~al~~a   97 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.+++..  .....++..... ..++.   +..+..       +.+.+.
T Consensus        26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~---d~~~v~~~~~~~~~~~~~i  100 (315)
T PRK06196         26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVEVVMLDLA---DLESVRAFAERFLDSGRRI  100 (315)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCeEEEccCC---CHHHHHHHHHHHHhcCCCC
Confidence            45899999999999999999999887  8999998752  212222221110 00111   001111       113568


Q ss_pred             CEEEEcCCCCCCCC----CCHHHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           98 DVVIIPAGVPRKPG----MTRDDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        98 DiVIi~ag~~~~~g----~~r~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |++|..||....+.    ..-...+..|    ..+.+.+.+.+++.. .+.+|++|.
T Consensus       101 D~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        101 DILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            99999998642211    1122334444    344666666666543 356666654

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.73  E-value=0.062  Score=50.15  Aligned_cols=112  Identities=21%  Similarity=0.198  Sum_probs=64.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCc----------cccccC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQ----------LGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d----------~~~al~   95 (358)
                      .++|.|+||+|++|..++..|+..+.  .|++.+.++.  .....++...    ..... +-+|          ..+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~-D~~~~~~~~~~~~~~~~~~~   77 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPL-DVTDPASFAAFLDAVEADLG   77 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence            46899999999999999999998886  7999997652  2222222211    11000 1111          112235


Q ss_pred             CCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|++|..+|.....   ..+   -...+..|..    +.+.+.+.+.+.. .+.|++++.-
T Consensus        78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  138 (273)
T PRK07825         78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASL  138 (273)
T ss_pred             CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCc
Confidence            789999999864321   112   1234455554    4455556555443 4556666543

>TIGR02415 23BDH acetoin reductases

Probab=95.73  E-value=0.11  Score=47.70  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=64.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LED   96 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~~   96 (358)
                      ++.|+||+|.+|..++..|+..+.  +|++++.++.  .....++.+..  .++..+. +-+|   +.++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999998886  8999987652  22223333222  1222221 1112   1111       235


Q ss_pred             CCEEEEcCCCCC-CC--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEee
Q 018314           97 SDVVIIPAGVPR-KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        97 aDiVIi~ag~~~-~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .|+||.++|... .+  +.+..   ..+..|.    .+++.+.+.+++...++.+++++
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            699999998632 11  22332   2344554    34455666666655556666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.72  E-value=0.053  Score=49.40  Aligned_cols=34  Identities=18%  Similarity=0.250  Sum_probs=30.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||+.|+||+|.+|+.++..|+..+.  +|++.|.++
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~   34 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR   34 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5899999999999999999998886  899999865

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.72  E-value=0.07  Score=49.25  Aligned_cols=99  Identities=22%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCC----cHH-----HHHHhhcCCCCccEEEEecCCccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN----TPG-----VAADVGHINTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~----~~~-----~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (358)
                      +..||.|+|| |.+|..++..|...+. -++|+++|++.    ...     ...++.+.......     ..++.+++++
T Consensus        24 ~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~-----~~~l~~~l~~   97 (226)
T cd05311          24 EEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKT-----GGTLKEALKG   97 (226)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcc-----cCCHHHHHhc
Confidence            4569999998 9999999999988774 12899999983    111     11222211100011     1245678899


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      +|+||-+.+    +|+-       +    .+..+.   .+++.+++..+||..
T Consensus        98 ~dvlIgaT~----~G~~-------~----~~~l~~---m~~~~ivf~lsnP~~  132 (226)
T cd05311          98 ADVFIGVSR----PGVV-------K----KEMIKK---MAKDPIVFALANPVP  132 (226)
T ss_pred             CCEEEeCCC----CCCC-------C----HHHHHh---hCCCCEEEEeCCCCC
Confidence            999998764    3431       1    122222   246777777889974

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06046 alanine dehydrogenase; Validated

Probab=95.72  E-value=0.023  Score=55.36  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=60.3

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      |-.++|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..+...+.+.++.++|++.  ....+.++.+. .+..+..
T Consensus       108 lT~~RTaA~sala~~~La~~-~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~  184 (326)
T PRK06046        108 LTDMRTGAAGGVAAKYLARK-DSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTV  184 (326)
T ss_pred             HHHHHHHHHHHHHHHHhCCC-CCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEE
Confidence            44455555555555555544 4569999997 999998888777666678999999986  23334444332 1223443


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +   +|+++++. +|+|+++-
T Consensus       185 ~---~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        185 A---EDIEEACD-CDILVTTT  201 (326)
T ss_pred             e---CCHHHHhh-CCEEEEec
Confidence            3   45667776 99999864

>PRK12744 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.35  Score=44.57  Aligned_cols=156  Identities=12%  Similarity=0.149  Sum_probs=78.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c----HHHHHHhhcCCCCccEEEEe-cCCc---cccc---
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T----PGVAADVGHINTRSEVAGYM-GNDQ---LGQA---   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a---   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  ++++++.+.  .    .....++....  .++..+. +-+|   ..+.   
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~   82 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDD   82 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHH
Confidence            346899999999999999999998876  666665432  1    11222232211  1222221 1111   1111   


Q ss_pred             ----cCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHHHHHHHHH
Q 018314           94 ----LEDSDVVIIPAGVPRK-P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        94 ----l~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~~~~~~~~  161 (358)
                          +...|++|++||.... +  ..+.   ...+..|..-...+.+.+.+.. +.+.++++ +......          
T Consensus        83 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~----------  152 (257)
T PRK12744         83 AKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF----------  152 (257)
T ss_pred             HHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc----------
Confidence                2467999999986321 1  1222   2344556544433444443322 23444433 3222111          


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                         .|....++.+......+-+.+++.++  +..|++..+
T Consensus       153 ---~~~~~~Y~~sK~a~~~~~~~la~e~~--~~~i~v~~v  187 (257)
T PRK12744        153 ---TPFYSAYAGSKAPVEHFTRAASKEFG--ARGISVTAV  187 (257)
T ss_pred             ---CCCcccchhhHHHHHHHHHHHHHHhC--cCceEEEEE
Confidence               12223445543334566677777765  445655444

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=95.70  E-value=0.13  Score=48.72  Aligned_cols=98  Identities=19%  Similarity=0.280  Sum_probs=62.7

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-CCCEEEEcCCCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGVPRK  109 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVIi~ag~~~~  109 (358)
                      |.|+|++|.||+++...|...++  +|..+-++....... + +    ..+...   +.+.+... ++|+||..||.|.-
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~~-~-~----~~v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQN-L-H----PNVTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhhh-c-C----cccccc---chhhhcccCCCCEEEECCCCccc
Confidence            67999999999999999999988  888888765222111 1 1    112211   11122233 79999999998753


Q ss_pred             CC---CC-HHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314          110 PG---MT-RDDLFNINAGIVKDLCSAIAKYCPNA  139 (358)
Q Consensus       110 ~g---~~-r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (358)
                      ..   .. -..+..--+...+.+++.|.+.....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P  103 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP  103 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence            32   11 23344555677788888888766333

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.24  Score=45.86  Aligned_cols=116  Identities=24%  Similarity=0.277  Sum_probs=64.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc---c------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG---Q------AL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~---~------al   94 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.+.++.  .....++.+   +.++..+. +-.|..   +      .+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~   78 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM   78 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence            456899999999999999999998886  8999998752  222222311   11233321 112211   0      13


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP  147 (358)
                      ...|+||.++|.....   ..+.   .+.+..|..-...+.+.+.++   .+.+.+++++..
T Consensus        79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            4679999999864321   1121   234456655444444444332   223556656553

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=95.69  E-value=0.11  Score=55.37  Aligned_cols=90  Identities=18%  Similarity=0.171  Sum_probs=60.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc--CCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~aDiVIi~  103 (358)
                      .+.|||.|+||+|++|++++..|...+.  ++.. ...       |+.+..   .         +...+  .+.|+||++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~-~~~-------~l~d~~---~---------v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEY-GKG-------RLEDRS---S---------LLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEe-ecc-------ccccHH---H---------HHHHHHhhCCCEEEEC
Confidence            4568999999999999999999888775  5421 110       111100   0         01112  268999999


Q ss_pred             CCCCCCC--C---CCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314          104 AGVPRKP--G---MTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus       104 ag~~~~~--g---~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                      |+....+  +   ....+.+..|+.....+++..++.+.
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~  474 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGL  474 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCC
Confidence            9764322  2   23466788999999999999998864

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.69  E-value=0.18  Score=46.50  Aligned_cols=117  Identities=17%  Similarity=0.230  Sum_probs=64.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc-------c
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  ++++.|.+..  .....++.+..  .++.... +-+|   ..+       .
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   85 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSK   85 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            356899999999999999999998886  8999987652  22223333221  1222111 1111   111       2


Q ss_pred             cCCCCEEEEcCCCCC--CCCCCHHH---HHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPR--KPGMTRDD---LFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~--~~g~~r~~---~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP  147 (358)
                      +...|++|..+|...  ....+..+   .+..|+.-...+.+.+..+   ...+.+++++.-
T Consensus        86 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  147 (255)
T PRK06113         86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSM  147 (255)
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecc
Confidence            345799999998532  12233332   2455655444444443321   223455655543

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.69  E-value=0.082  Score=47.86  Aligned_cols=35  Identities=26%  Similarity=0.341  Sum_probs=28.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +++|.|+||+|.+|+.++..|.+++.  ++.+.....
T Consensus         6 ~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          6 GRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            45899999999999999999999887  666655443

>PRK06128 oxidoreductase; Provisional

Probab=95.68  E-value=0.21  Score=47.47  Aligned_cols=115  Identities=22%  Similarity=0.238  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe-cCCc---cc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQ---LG-------Q   92 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~   92 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.+.+..    ......+....  .++..+. +-.|   ..       +
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999999886  7888765431    12222232221  1222211 1111   11       1


Q ss_pred             ccCCCCEEEEcCCCCC--CC--CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           93 ALEDSDVVIIPAGVPR--KP--GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        93 al~~aDiVIi~ag~~~--~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                      .+...|++|..||...  .+  ..+   -...+..|+.-...+.+.+.++- +.+.+|+++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence            2346899999998642  21  222   23456677665555555555443 3456665554

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=95.67  E-value=0.062  Score=55.27  Aligned_cols=98  Identities=16%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC----CCCccEEEEecCCccccccC---CCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----NTRSEVAGYMGNDQLGQALE---DSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----~~~~~v~~~~~~~d~~~al~---~aDi   99 (358)
                      ..++|++||- |.||+.++..|+..++  +|+.||+...+.  .++.+.    .. ..+..   ..++.+..+   .+|+
T Consensus         5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~--~~l~~~~~~~Ga-~~~~~---a~s~~e~v~~l~~~dv   75 (493)
T PLN02350          5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKKEGN-LPLYG---FKDPEDFVLSIQKPRS   75 (493)
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHhhhhcCC-ccccc---CCCHHHHHhcCCCCCE
Confidence            4568999997 9999999999999998  999999865222  222221    11 11222   133444444   5999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~  148 (358)
                      ||+...    .           -+.++++...+-.. .|+.++|-.||-.
T Consensus        76 Ii~~v~----~-----------~~aV~~Vi~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         76 VIILVK----A-----------GAPVDQTIKALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             EEEECC----C-----------cHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence            999741    1           12233332333333 4666777666653

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.04  Score=51.62  Aligned_cols=111  Identities=14%  Similarity=0.035  Sum_probs=62.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------ccCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------ALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------al~~a   97 (358)
                      +.|.|+||+|++|+.++..|+..+.  +|++.+.+....  .++.+.. ...+..+. +-+|   +.+       .+...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  899999765211  1111111 01111111 1111   111       13467


Q ss_pred             CEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEee
Q 018314           98 DVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        98 DiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |.||+++|.....   ..+   -.+.+..|+.-    .+.+.+.+++...+ .+|+++
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            9999999865321   112   22344555554    56666666665444 455454

>PLN02928 oxidoreductase family protein

Probab=95.66  E-value=0.04  Score=54.21  Aligned_cols=106  Identities=19%  Similarity=0.193  Sum_probs=62.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHh--hcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADV--GHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl--~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      -..++|+|||. |.||+.++..+..-|.  +|..||..........+  ................++++.++.||+|++.
T Consensus       157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~  233 (347)
T PLN02928        157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC  233 (347)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence            45679999997 9999999999886565  99999975321111111  0000000000000124678899999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .-  ..+         .|-.++.  .+.++...|++++|+++--
T Consensus       234 lP--lt~---------~T~~li~--~~~l~~Mk~ga~lINvaRG  264 (347)
T PLN02928        234 CT--LTK---------ETAGIVN--DEFLSSMKKGALLVNIARG  264 (347)
T ss_pred             CC--CCh---------HhhcccC--HHHHhcCCCCeEEEECCCc
Confidence            52  111         2222221  3455556788999988644

>PRK12746 short chain dehydrogenase; Provisional

Probab=95.65  E-value=0.18  Score=46.31  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe-cCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---cccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al------   94 (358)
                      .++|.|+||+|.+|+.++..|+..+.  ++++.+ .+..  .....++....  .++..+. +-.|.   .+++      
T Consensus         6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~   81 (254)
T PRK12746          6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE   81 (254)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence            46899999999999999999998886  676654 3321  12222232111  1222221 11221   1112      


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        95 -------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                             .+.|+||+++|.....   ..+.   ...+..|+.-...+.+.+.++. ..+.++++|.
T Consensus        82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   2689999999864321   1121   2334566665555555555432 2235555543

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=95.65  E-value=0.15  Score=46.63  Aligned_cols=115  Identities=17%  Similarity=0.308  Sum_probs=62.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .+.+.|+||+|.+|+.++..|+..+.  ++++.+.+.   ......++.+..  .++.... +-.|   +.+++      
T Consensus         6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (247)
T PRK12935          6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH   81 (247)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999998886  676655432   122223443321  1233221 1111   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tN  146 (358)
                       ...|+||+++|.....   ..+   -.+.+..|..-...+.+.+..+   ..++.+++++.
T Consensus        82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence             3479999999864321   111   2334556655554444444432   23445565554

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.65  E-value=0.063  Score=54.43  Aligned_cols=128  Identities=21%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ++||+|+|- |.-|.+++..|...+.  ++..+|.++......+...  ....+....+..+. +...++|+||..-|+|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~~~--~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~   80 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQPL--LLEGIEVELGSHDD-EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhhhh--hccCceeecCccch-hccccCCEEEECCCCC
Confidence            679999997 9999999999999886  9999998763211111110  01234433343333 6789999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg  163 (358)
                      ...-. -.......++++-++--..+... .+.+|-+  ||==...|.+++++++.+|
T Consensus        81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~-~~p~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPL-VEAAKAAGIEIIGDIELFYRLSG-EAPIVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHH-HHHHHHcCCcEEeHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            53321 12233456677766666655431 1113334  5555578888888888888

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.07  Score=47.90  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccC---CCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALE---DSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~---~aDiV  100 (358)
                      +++|.|+||+|.+|..++..|+.. .  +|+++|.+...  ..++.+...  .+.... +   ..++.++++   +.|+|
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELP--GATPFPVDLTDPEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhc--cceEEecCCCCHHHHHHHHHhcCCCCEE
Confidence            458999999999999999988877 4  79999976422  112221110  111111 1   122233343   68999


Q ss_pred             EEcCCCC
Q 018314          101 IIPAGVP  107 (358)
Q Consensus       101 Ii~ag~~  107 (358)
                      |+++|..
T Consensus        76 i~~ag~~   82 (227)
T PRK08219         76 VHNAGVA   82 (227)
T ss_pred             EECCCcC
Confidence            9999864

>PRK05599 hypothetical protein; Provisional

Probab=95.64  E-value=0.57  Score=43.11  Aligned_cols=155  Identities=12%  Similarity=0.144  Sum_probs=81.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~   95 (358)
                      |.+.|+||++++|..++..|++ +.  .|++.+.++  .+..+.++..... ..+..+. +-.|          ..+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~~-g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLCH-GE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHhC-CC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            3588999999999999999884 53  899999765  3333444543221 1122211 1111          112235


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      .-|++|..+|.....   ..+.   .+....|    ..+.+.+.+.+.+...++.|++++.-.....            .
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~------------~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRA------------R  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccC------------C
Confidence            689999999864321   1111   1222223    3344555666665544577777766543221            1


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +..-.++.+.-....+-+.+++.++  +..|++..+
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~~v  178 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLIIA  178 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEEEe
Confidence            2222334432223345566676653  445655433

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.64  E-value=0.16  Score=47.17  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=66.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      +.++|.|+||+|++|..++..++..+ .  .|++.++++.   .....++.... ..++.... +-+|   ..+.+    
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence            45689999999999999999988874 5  8999998752   22233443321 11232221 1111   11111    


Q ss_pred             --CCCCEEEEcCCCCCCCCC---CH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 --EDSDVVIIPAGVPRKPGM---TR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~g~---~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        .+.|++|..+|.......   +.   .+.+..|..    +.+.+.+.+.+... +.+++++.
T Consensus        84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence              379999998887432211   11   123555543    34567777776554 45555544

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=95.63  E-value=0.16  Score=45.85  Aligned_cols=114  Identities=20%  Similarity=0.279  Sum_probs=65.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (358)
                      |.|+|++|.+|..++..|+.++.  ++++.+.+.   ......++.+...  ++.... +-+|   +.+.+       ..
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~   76 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGV--KALGVVCDVSDREDVKAVVEEIEEELGP   76 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999887  899998754   1222333432221  222211 1112   22222       34


Q ss_pred             CCEEEEcCCCCCC-C--CCC---HHHHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCCC
Q 018314           97 SDVVIIPAGVPRK-P--GMT---RDDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPV  148 (358)
Q Consensus        97 aDiVIi~ag~~~~-~--g~~---r~~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP~  148 (358)
                      .|+||..+|.... +  +.+   -...+..|..-...+.+.+.++.   ..+.+++++...
T Consensus        77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            6999999986421 1  111   23456677776666666655442   234566565543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.8  Score=41.62  Aligned_cols=35  Identities=23%  Similarity=0.335  Sum_probs=31.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|++|.+++..|+..+.  +|++++.++
T Consensus         6 ~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~   40 (239)
T PRK08703          6 DKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ   40 (239)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            45899999999999999999998886  899999876

>PRK12747 short chain dehydrogenase; Provisional

Probab=95.62  E-value=0.57  Score=42.94  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~   62 (358)
                      .+.+.|+||+|++|.+++..|+..+.  +|++.+.
T Consensus         4 ~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          4 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            35899999999999999999999886  7888754

>PRK12743 oxidoreductase; Provisional

Probab=95.61  E-value=0.6  Score=43.02  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=62.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHHHHHhhcCCCCccEEEEe-cCCcc---cc-------cc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYM-GNDQL---GQ-------AL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~-------al   94 (358)
                      ++|.|+||+|.+|..++..|+..+.  +|++.+... .  .....++....  .++.... +-+|.   ++       .+
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRL   78 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999886  787776433 1  22223333221  1222221 11221   11       12


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|+||+.+|.....   +.+.   .+.+..|..-.    +.+.+.+.+....+.+|+++.-
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~  141 (256)
T PRK12743         79 GRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSV  141 (256)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeec
Confidence            3579999999864321   1121   23344454433    4444444433334667766653

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=95.61  E-value=0.088  Score=51.07  Aligned_cols=107  Identities=21%  Similarity=0.415  Sum_probs=67.1

Q ss_pred             cccccCCCCCCceEEEEcCCCChHHHHHHHHHhC----C-CCcEEEEEecCC-cHHHHHHhh------cCC--------C
Q 018314           18 ARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLN----P-LVSRLALYDIAN-TPGVAADVG------HIN--------T   77 (358)
Q Consensus        18 ~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~----~-~~~ei~L~D~~~-~~~~~~dl~------~~~--------~   77 (358)
                      ++..-+.+..+.||+|||+ |+=|++++-.+..+    + ...+|..|=..+ ..+....|.      |..        .
T Consensus        11 ~~~~~~~~~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~l   89 (372)
T KOG2711|consen   11 IRNLGKAERDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKL   89 (372)
T ss_pred             hhccCchhcCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccC
Confidence            3334445556789999997 99999998776653    2 234666665544 223122222      211        2


Q ss_pred             CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018314           78 RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (358)
Q Consensus        78 ~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~  144 (358)
                      |.++..   .+|+.++++|||++|+..  |              -+.+.++++.|..+- |++..|..
T Consensus        90 P~NvvA---v~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL  138 (372)
T KOG2711|consen   90 PENVVA---VPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISL  138 (372)
T ss_pred             CCCeEe---cchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEe
Confidence            445554   478999999999999974  3              345667778887775 56555543

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.60  E-value=0.097  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||+|+|+ |.+|+.++..|+..|+ .+|+++|.+.
T Consensus        21 ~s~VlIiG~-gglG~evak~La~~GV-g~i~lvD~d~   55 (197)
T cd01492          21 SARILLIGL-KGLGAEIAKNLVLSGI-GSLTILDDRT   55 (197)
T ss_pred             hCcEEEEcC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            459999998 8999999999999995 6899999864

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.59  E-value=0.056  Score=51.99  Aligned_cols=67  Identities=16%  Similarity=0.164  Sum_probs=47.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...||.|+|+ |.+|..++..|...+.  +|..+|++.. ...+.++   ..  +..   ..+++.+.++++|+||.+.
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G~--~~~---~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---GL--SPF---HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---CC--eee---cHHHHHHHhCCCCEEEECC
Confidence            4679999998 9999999999988775  9999998752 2222222   11  111   1134567789999999985

>PRK08324 short chain dehydrogenase; Validated

Probab=95.59  E-value=0.14  Score=54.83  Aligned_cols=115  Identities=20%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|+++|++..  .....++...   .++.... +-+|   ..+++      
T Consensus       421 ~gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~  495 (681)
T PRK08324        421 AGKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALA  495 (681)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999998886  8999998762  2222233321   1222211 1112   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       .+.|+||.++|.....   ..+..   ..+..|    ..+++...+.+++....+.+++++.
T Consensus       496 ~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        496 FGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence             3689999999864321   12221   223344    3444555565555443456666654

>PRK09242 tropinone reductase; Provisional

Probab=95.59  E-value=0.29  Score=45.05  Aligned_cols=117  Identities=15%  Similarity=0.158  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|++.+.+.  ......++.......++.... +-.|          ..+.+
T Consensus         9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  899999865  222333443321112232221 1111          11234


Q ss_pred             CCCCEEEEcCCCCC-CC--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPR-KP--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~-~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|+||.++|... .+  ..+..   ..+..|..    +.+.+.+.+++.. .+.+++++.-
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~ii~~sS~  148 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA-SSAIVNIGSV  148 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CceEEEECcc
Confidence            56799999998632 11  12222   23444544    4444455554433 3455655443

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.59  E-value=0.079  Score=53.61  Aligned_cols=127  Identities=18%  Similarity=0.308  Sum_probs=76.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      .++|.|+|+ |..|.+.+..|...+.  ++..+|..........|.....  .++.+.+..+ ...+.++|+||.+.|+|
T Consensus         5 ~~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~~--gi~~~~g~~~-~~~~~~~d~vv~spgi~   78 (445)
T PRK04308          5 NKKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMFD--GLVFYTGRLK-DALDNGFDILALSPGIS   78 (445)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhccC--CcEEEeCCCC-HHHHhCCCEEEECCCCC
Confidence            458999998 9999999999998887  8999997653211223433211  2443333222 23457899999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHHH--HH-HHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          108 RKPGMTRDDLFNINAGIVKD--LC-SAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~--i~-~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      ...-. .....+.+++++.+  +. ..+++.  +..+|-+|=..+  .+|.+++++++..|
T Consensus        79 ~~~p~-~~~a~~~~i~v~~~~~~~~~~~~~~--~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         79 ERQPD-IEAFKQNGGRVLGDIELLADIVNRR--GDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCCHH-HHHHHHcCCcEEEhHHHHHHhhhcC--CCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            43221 11222456666532  32 223222  223455555554  78888888888777

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.053  Score=50.42  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=62.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccC-------CCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALE-------DSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~-------~aDi   99 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++.+.+......  ..+..   -+..- ++.+++.++++       ..|+
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~---~~~~D~~d~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE---LLELDVTDDASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe---eEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence            34799999999999999999998886  89999986421110  01100   01110 01122223333       4699


Q ss_pred             EEEcCCCCCCCC---CC---HHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          100 VIIPAGVPRKPG---MT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       100 VIi~ag~~~~~g---~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ||.++|......   .+   -...+..|.    ...+.+.+.+++... +.+++++..
T Consensus        77 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~~iv~isS~  133 (270)
T PRK06179         77 LVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGS-GRIINISSV  133 (270)
T ss_pred             EEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEECCc
Confidence            999998743221   12   123344454    344555555555443 455655543

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=95.58  E-value=0.43  Score=44.85  Aligned_cols=68  Identities=34%  Similarity=0.345  Sum_probs=43.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++||+|+|++|.||+.++..+...+-..-+.++|.+......  ..  .  ..+..   .+|+++.++++|+||...
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~--~~--~--~~i~~---~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG--QG--A--LGVAI---TDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc--cC--C--CCccc---cCCHHHhccCCCEEEECC
Confidence            579999997799999999877765533334458876521111  11  1  12222   356677778999999664

>PLN02996 fatty acyl-CoA reductase

Probab=95.57  E-value=0.22  Score=51.26  Aligned_cols=108  Identities=18%  Similarity=0.150  Sum_probs=67.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCCc--H---HHHHHhhcCC------------C----CccEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT--P---GVAADVGHIN------------T----RSEVAGY   84 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~--~---~~~~dl~~~~------------~----~~~v~~~   84 (358)
                      +.+.|.|+||+|++|+.++..|+. .+...+|++..+...  .   ....++.+..            .    ..++...
T Consensus        10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i   89 (491)
T PLN02996         10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPV   89 (491)
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEE
Confidence            345899999999999999987765 445667888776541  1   1111111100            0    1244443


Q ss_pred             ecC-C---------c-cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 018314           85 MGN-D---------Q-LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY  135 (358)
Q Consensus        85 ~~~-~---------d-~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~  135 (358)
                      .+. .         + +.+.++++|+||++|+... ...+..+....|+.....+.+...+.
T Consensus        90 ~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         90 PGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             ecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            321 0         1 2345678999999987543 23345567788999999998888764

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.57  E-value=0.34  Score=44.86  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=66.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCccc----------ccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQLG----------QAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~al   94 (358)
                      .+.+.|+||+|.+|..++..|+..+.  +|++.++++  ......++.......++..+. +-.|..          +.+
T Consensus         8 ~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          8 GRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999887  899999875  222233333221111332221 112211          123


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.....   ..+..   ..+..|    ....+.+.+.+++.. .+.|++++.-
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  147 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNSL  147 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEeccc
Confidence            4579999999864311   11221   222233    445566666666543 3556655543

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.56  E-value=0.09  Score=53.33  Aligned_cols=125  Identities=19%  Similarity=0.288  Sum_probs=76.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH---HHHhhcCCCCccEEEEecCC-cc---ccccCCCCEEEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV---AADVGHINTRSEVAGYMGND-QL---GQALEDSDVVII  102 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~---~~dl~~~~~~~~v~~~~~~~-d~---~~al~~aDiVIi  102 (358)
                      ||.|+|+ |..|.+.|..|...|.  +|.++|.++....   ...|....    ++.+.+.. ++   ...+.+.|.||.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999998 9999999999999987  8999998752111   11233322    22222221 10   024778999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe--eCCCCcchHHHHHHHHHhC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI--SNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~--tNP~d~~t~~~~~~~~~sg  163 (358)
                      +.|.|...- ........+++++.++....+... +..+|-+  ||==..+|.+++++++..|
T Consensus        75 s~gi~~~~~-~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         75 SPGIPWDHP-TLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CCCCCCCCH-HHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            988874221 122223456777776655444332 2234445  4444478888888888877

>PLN00016 RNA-binding protein; Provisional

Probab=95.55  E-value=0.09  Score=51.92  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             CCceEEEE----cCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVL----GAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~Ii----GA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++||.|+    ||+|++|+.++..|...++  +|+.++++.
T Consensus        51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~   90 (378)
T PLN00016         51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK   90 (378)
T ss_pred             ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence            35689999    9999999999999999887  999999865

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=95.55  E-value=0.12  Score=49.20  Aligned_cols=67  Identities=27%  Similarity=0.420  Sum_probs=42.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH---HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +++|+|+|. |.||..++..|...++  .+..++.+...+   .+.++.=..   ...    .....++.++||+||++.
T Consensus         3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d---~~~----~~~~~~~~~~aD~Vivav   72 (279)
T COG0287           3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVID---ELT----VAGLAEAAAEADLVIVAV   72 (279)
T ss_pred             CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccc---ccc----cchhhhhcccCCEEEEec
Confidence            569999997 9999999999999998  444555544211   111111000   100    011146788999999985

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.54  E-value=0.0082  Score=59.55  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=45.3

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEEcCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi~ag~  106 (358)
                      |.|+|| |.||+.++..|+..+...+|++.|++....... ..+.. ..++.... +   ..++.+.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~-~~~~~-~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL-AEKLL-GDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH-HT--T-TTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH-Hhhcc-ccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789998 999999999999988666999999876322211 11101 11222221 1   12356788999999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK06949 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.14  Score=46.97  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|+.++..|+..+.  +|++.+.++
T Consensus         9 ~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~   43 (258)
T PRK06949          9 GKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV   43 (258)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            46899999999999999999998886  899998865

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.52  E-value=0.11  Score=47.48  Aligned_cols=36  Identities=28%  Similarity=0.537  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..++.|+|++|.+|..++..++..+.  .|+++|.++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~   39 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ   39 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999998886  899999875

>PLN03139 formate dehydrogenase; Provisional

Probab=95.50  E-value=0.076  Score=52.97  Aligned_cols=96  Identities=22%  Similarity=0.240  Sum_probs=60.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|||. |.||..++..|..-+.  +|+.||.........  .+.    .+..   ..++++.+++||+|++..
T Consensus       196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~l  263 (386)
T PLN03139        196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINT  263 (386)
T ss_pred             CCCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeC
Confidence            345679999997 9999999999986555  899999764211111  111    1222   135678889999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                        |..         ..+..++-  .+.+....|++++|+++
T Consensus       264 --Plt---------~~T~~li~--~~~l~~mk~ga~lIN~a  291 (386)
T PLN03139        264 --PLT---------EKTRGMFN--KERIAKMKKGVLIVNNA  291 (386)
T ss_pred             --CCC---------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence              211         12222221  24555556888888774

>PRK08226 short chain dehydrogenase; Provisional

Probab=95.49  E-value=0.19  Score=46.38  Aligned_cols=35  Identities=29%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|.+|+.++..|+..+.  +|++++.++
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~   40 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISP   40 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence            45899999999999999999998887  899999865

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.47  E-value=0.26  Score=44.61  Aligned_cols=117  Identities=19%  Similarity=0.288  Sum_probs=64.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (358)
                      ++++|.|+||+|.+|+.++..|+..+.  ++++...+..   .....++....  .++.... +-.|   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998886  7766665442   12222232211  1222221 1111   1111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCC
Q 018314           94 -LEDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKYC---PNAIVNMISNP  147 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP  147 (358)
                       +.+.|.||+++|.....   ..+..   ..+..|+.-...+.+.+.++.   +.+.+++++..
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~  143 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSV  143 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence             23689999999864321   11222   234566666666665555442   23455555543

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=95.46  E-value=0.58  Score=43.64  Aligned_cols=35  Identities=17%  Similarity=0.311  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|.+|..++..|+..+.  +|+++|.+.
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~   44 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ   44 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45799999999999999999998887  899999865

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.44  E-value=0.074  Score=52.83  Aligned_cols=35  Identities=31%  Similarity=0.606  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +..||.|+|+ |.+|+.++..|+..|. .+|.|+|.+
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            4568999998 9999999999999985 589999987

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=95.44  E-value=0.66  Score=43.11  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=27.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      .+.|+||+|++|..++..|+..+.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            688999999999999999999886  78886543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.43  E-value=0.31  Score=50.10  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=74.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ..||.|+|. |..|.++|..|...|.  +|..+|.+.......+|.....  .++...+..+ .+.+.++|+||.+.|+|
T Consensus         7 ~~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~   80 (498)
T PRK02006          7 GPMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLS   80 (498)
T ss_pred             CCEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCC
Confidence            458999997 9999999999998887  8999997652211223443321  2233222222 35678999999999887


Q ss_pred             CCCCC--CHHHH-HHHHHHHHHH---HHHHHHhhC-C--CeEEEEeeCCC--CcchHHHHHHHHHhC
Q 018314          108 RKPGM--TRDDL-FNINAGIVKD---LCSAIAKYC-P--NAIVNMISNPV--NSTVPIAAEVFKKAG  163 (358)
Q Consensus       108 ~~~g~--~r~~~-~~~N~~i~~~---i~~~i~~~~-p--~a~iiv~tNP~--d~~t~~~~~~~~~sg  163 (358)
                      ...-.  .-... -..|++++.+   +...++..+ +  ...+|-+|=.+  ..+|.+++++++..|
T Consensus        81 ~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         81 PLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             CcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            53211  11111 1234444421   122222211 1  11345554444  478888888888877

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=95.42  E-value=0.61  Score=42.20  Aligned_cols=71  Identities=17%  Similarity=0.221  Sum_probs=44.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc------cccccCCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ------LGQALEDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~al~~aDiVI  101 (358)
                      |+|.|+||+|++|..++..|+..+....+++.+.+....    +.+    .++..+. +-+|      +.+.+...|+||
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~----~~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQH----DNVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----ccc----CceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875433666666543211    111    1222211 1111      123456889999


Q ss_pred             EcCCCC
Q 018314          102 IPAGVP  107 (358)
Q Consensus       102 i~ag~~  107 (358)
                      .++|..
T Consensus        73 ~~aG~~   78 (235)
T PRK09009         73 NCVGML   78 (235)
T ss_pred             ECCccc
Confidence            999875

>PRK08264 short chain dehydrogenase; Validated

Probab=95.42  E-value=0.13  Score=46.73  Aligned_cols=115  Identities=14%  Similarity=0.098  Sum_probs=63.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccc---cCCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQA---LEDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~a---l~~aD   98 (358)
                      .+.++|.|+||+|.+|+.++..|+..+. .+|++++.+......  . .    .++.... +   .+++.+.   +...|
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~--~-~----~~~~~~~~D~~~~~~~~~~~~~~~~id   75 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD--L-G----PRVVPLQLDVTDPASVAAAAEAASDVT   75 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh--c-C----CceEEEEecCCCHHHHHHHHHhcCCCC
Confidence            3456899999999999999999998774 368889876522111  1 0    1222211 1   1122222   23579


Q ss_pred             EEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCC
Q 018314           99 VVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (358)
Q Consensus        99 iVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~  148 (358)
                      +||.++|.+...    ..+.   .+.+..|..-...+.+.+.+.   ...+.+++++...
T Consensus        76 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  135 (238)
T PRK08264         76 ILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL  135 (238)
T ss_pred             EEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence            999999873211    1222   223445555444444443322   2345566665543

>PRK06484 short chain dehydrogenase; Validated

Probab=95.42  E-value=0.11  Score=53.35  Aligned_cols=118  Identities=20%  Similarity=0.200  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccc-------cccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLG-------QALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~-------~al~~a   97 (358)
                      +.+.+.|+||++.+|..++..|+..+.  .|+++|.+..  .....++........... +...+..       +.+...
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDHHALAMDV-SDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCceeEEEecc-CCHHHHHHHHHHHHHHhCCC
Confidence            445788999999999999999999886  8999998652  222222221100000000 0011111       223468


Q ss_pred             CEEEEcCCCC--C-CC--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           98 DVVIIPAGVP--R-KP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        98 DiVIi~ag~~--~-~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      |++|..+|..  . .+  ..+-   ...+..|+    .+.+.+.+.+.+....+.+++++.-
T Consensus        81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~  142 (520)
T PRK06484         81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASG  142 (520)
T ss_pred             CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCc
Confidence            9999999862  1 11  2222   23344553    4556666666554433366666543

>PRK08862 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.46  Score=43.43  Aligned_cols=116  Identities=9%  Similarity=0.080  Sum_probs=66.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC---Cccc-------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN---DQLG-------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~---~d~~-------~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..+.  .|++.+.++  .+....++....  .++..+. +.   ++..       +.
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ   79 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  222223332211  1222221 11   1111       12


Q ss_pred             cC-CCCEEEEcCCCCCC--C--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LE-DSDVVIIPAGVPRK--P--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~-~aDiVIi~ag~~~~--~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +. .-|++|..+|....  +  ..+..+   .+..|    ..+.+.+.+.+.+...++.|++++.
T Consensus        80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            23 68999999874221  1  122222   22223    3345566677766554567777764

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.31  Score=44.82  Aligned_cols=101  Identities=17%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------C
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (358)
                      .++|.|+||+|.+|..++..|+..+.  ++++.+.++. .....++....  .++..+. +-+|   +.+.+       .
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45899999999999999999999886  7888887652 22223333222  1222221 1111   22223       3


Q ss_pred             CCCEEEEcCCCCCCCC--CC---HHHHHHHHHHHHHHHHHHH
Q 018314           96 DSDVVIIPAGVPRKPG--MT---RDDLFNINAGIVKDLCSAI  132 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g--~~---r~~~~~~N~~i~~~i~~~i  132 (358)
                      ..|+||.++|......  ..   -.+.+..|......+.+..
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  124 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYC  124 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHH
Confidence            5799999998633221  11   2234556655444444443

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=95.39  E-value=0.048  Score=52.06  Aligned_cols=67  Identities=21%  Similarity=0.360  Sum_probs=51.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ..+|+.||- |.+|++++..|+..++  .|+.||++.  ....+|.+...  ++.     ..+.+-.++||+||...+.
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~--~k~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~  101 (327)
T KOG0409|consen   35 KTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTK--DKCKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN  101 (327)
T ss_pred             cceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcH--HHHHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence            568999996 9999999999999998  999999864  33445555442  222     2246778999999998654

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=95.38  E-value=0.012  Score=56.16  Aligned_cols=97  Identities=25%  Similarity=0.258  Sum_probs=58.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||.|+||+|.+|+.+...|...++  +++.++..+     .|+.+..   .+.      ++.+. .+-|+||.+|+...
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~---~~~------~~~~~-~~pd~Vin~aa~~~   63 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE---AVA------KLLEA-FKPDVVINCAAYTN   63 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH---HHH------HHHHH-H--SEEEE------
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH---HHH------HHHHH-hCCCeEeccceeec
Confidence            7999999999999999999998776  788886542     1222211   010      01111 25789999987642


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus       109 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      ..  ..........|......+++...+.+  +.+|-+
T Consensus        64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~   99 (286)
T PF04321_consen   64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI   99 (286)
T ss_dssp             HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred             HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence            11  12355667889999999999988764  454444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.37  E-value=0.38  Score=43.81  Aligned_cols=112  Identities=21%  Similarity=0.224  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|++.+.++.  .....++.     .++..+. +..|.          .+.+
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF   78 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999886  8999998652  11111221     1222111 11121          1123


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tN  146 (358)
                      ...|+||..+|.....   ..+.   ...+..|+.-...+.+.+.++ ...+.+++++.
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S  137 (249)
T PRK06500         79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGS  137 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEec
Confidence            4689999999864321   1222   234566666555555555543 11234444433

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=95.36  E-value=0.12  Score=50.04  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=45.5

Q ss_pred             ceEEEEcCCCCh--------------------HHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe
Q 018314           29 RKVAVLGAAGGI--------------------GQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM   85 (358)
Q Consensus        29 ~KI~IiGA~G~v--------------------G~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~   85 (358)
                      |||+|-|| |+-                    |+.+|..|+..++  +|++||++..   ......+.+..    ...  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaG----A~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAG----VKV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCC----Cee--
Confidence            68888887 753                    6788888888888  9999998752   22233444433    122  


Q ss_pred             cCCccccccCCCCEEEEcC
Q 018314           86 GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~a  104 (358)
                       .++..++.++||+||++-
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             134568899999999984

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.36  E-value=0.14  Score=51.66  Aligned_cols=126  Identities=18%  Similarity=0.206  Sum_probs=72.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccC-CCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVIi~  103 (358)
                      +.++|.|+|+ |.+|.+.+..|+..|.  +|.+.|.+.  ......++....    +..+.+. +....+. +.|+||..
T Consensus         4 ~~k~v~v~G~-g~~G~s~a~~l~~~G~--~V~~~d~~~~~~~~~~~~l~~~g----~~~~~~~-~~~~~~~~~~d~vV~s   75 (447)
T PRK02472          4 QNKKVLVLGL-AKSGYAAAKLLHKLGA--NVTVNDGKPFSENPEAQELLEEG----IKVICGS-HPLELLDEDFDLMVKN   75 (447)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCCccchhHHHHHHhcC----CEEEeCC-CCHHHhcCcCCEEEEC
Confidence            3468999998 7799999999998887  899999765  122223344322    2222221 1122234 49999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC--CcchHHHHHHHHHhC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV--NSTVPIAAEVFKKAG  163 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~--d~~t~~~~~~~~~sg  163 (358)
                      .|++...- ........+++++.+.- ......+ ..+|-+|=..  ..++.+++++++..|
T Consensus        76 ~gi~~~~~-~~~~a~~~~i~v~~~~e-l~~~~~~-~~~I~VTGT~GKTTTt~ll~~iL~~~g  134 (447)
T PRK02472         76 PGIPYTNP-MVEKALEKGIPIITEVE-LAYLISE-APIIGITGSNGKTTTTTLIGEMLKAGG  134 (447)
T ss_pred             CCCCCCCH-HHHHHHHCCCcEEeHHH-HHHHhcC-CCEEEEeCCCchHHHHHHHHHHHHHCC
Confidence            99875321 11222344566553332 1112222 2244454444  467778888887766

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.35  E-value=0.25  Score=45.49  Aligned_cols=112  Identities=15%  Similarity=0.216  Sum_probs=63.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (358)
                      +.+++.|+||+|.+|..++..|+..+.  ++++.+.+.. ....++.+..    +..+. +-+|   +.++       +.
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~----~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKG----VFTIKCDVGNRDQVKKSKEVVEKEFG   78 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCC----CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999999886  7877765431 1122232211    11110 1111   1122       23


Q ss_pred             CCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 DSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 ~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..|+||.++|.... +  ..+..   ..+..|+.    +.+.+.+.+++.. .+.+|+++.
T Consensus        79 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  138 (255)
T PRK06463         79 RVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS  138 (255)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            67999999987431 1  22222   23444444    3567777776433 455665554

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.33  E-value=0.11  Score=52.95  Aligned_cols=125  Identities=21%  Similarity=0.275  Sum_probs=78.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+||.|+|. |..|.+++..|...+.  +|..+|.++.   .....+|....    +..+.+.. ..+.+.++|+||.+.
T Consensus        14 ~~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~~~~-~~~~~~~~dlVV~Sp   85 (458)
T PRK01710         14 NKKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKELG----VKLVLGEN-YLDKLDGFDVIFKTP   85 (458)
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhCC----CEEEeCCC-ChHHhccCCEEEECC
Confidence            348999997 9999999999999887  8999998652   11112344322    22222221 235578999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      |++...-+ .....+.+++++.++-...+ +. +..+|-+|=.++  .++.+++++++..|
T Consensus        86 gi~~~~p~-~~~a~~~~i~i~s~~e~~~~-~~-~~~vIaITGTnGKTTT~~ll~~iL~~~g  143 (458)
T PRK01710         86 SMRIDSPE-LVKAKEEGAYITSEMEEFIK-YC-PAKVFGVTGSDGKTTTTTLIYEMLKEEG  143 (458)
T ss_pred             CCCCCchH-HHHHHHcCCcEEechHHhhh-hc-CCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            88753222 22233567777765533222 32 233555655554  67778888887766

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.32  E-value=0.036  Score=51.19  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=64.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~   95 (358)
                      +.++|.|+||+|.+|+.++..|+..+.  +|++.+.++...    +..     ++.... +-.|          ..+.+.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~~~----~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~~   76 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRPDD----LPE-----GVEFVAADLTTAEGCAAVARAVLERLG   76 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChhhh----cCC-----ceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence            346899999999999999999998887  899999864211    111     111110 1111          112345


Q ss_pred             CCCEEEEcCCCCCCC-C----CCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP-G----MTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~-g----~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..|+||..||..... +    .+.   ...+..|.    .+.+.+.+.+++... +.+|+++...
T Consensus        77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-g~ii~isS~~  140 (260)
T PRK06523         77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGS-GVIIHVTSIQ  140 (260)
T ss_pred             CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-cEEEEEeccc
Confidence            689999999853211 1    121   22344453    344566666665543 4566666543

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=95.31  E-value=0.063  Score=49.82  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|.+|..++..|+..+.  ++++.|.++
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~   43 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG   43 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            45899999999999999999999887  899999865

>PRK05872 short chain dehydrogenase; Provisional

Probab=95.30  E-value=0.37  Score=45.81  Aligned_cols=113  Identities=26%  Similarity=0.325  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEE-ecCCcc---c-------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQL---G-------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~---~-------~a   93 (358)
                      +.++|.|+||+|.+|..++..|+..+.  +|++.+.++.  +....++...   ..+... .+-+|.   .       +.
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~   82 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER   82 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999886  8999998652  2223333321   122211 111221   1       12


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...|+||..+|.....   ..+.   ...+..|..-.    +.+.+.+.+  ..+.|++++.
T Consensus        83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~--~~g~iv~isS  143 (296)
T PRK05872         83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIE--RRGYVLQVSS  143 (296)
T ss_pred             cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHH--cCCEEEEEeC
Confidence            35679999999864311   1221   22344554433    444444433  2456666654

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.29  E-value=0.21  Score=45.74  Aligned_cols=34  Identities=26%  Similarity=0.328  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++|.|+||+|++|+.++..|+..+.  +++++|.+.
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4689999999999999999999886  899999754

>PRK07985 oxidoreductase; Provisional

Probab=95.29  E-value=0.5  Score=44.93  Aligned_cols=115  Identities=19%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe-cCCcc----------ccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (358)
                      +++.|+||+|++|.+++..|+..+.  +|++.+.+..    ......+.+..  .++..+. +-+|.          .+.
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~  125 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKA  125 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5899999999999999999999887  8888876431    11111122211  1222211 11221          122


Q ss_pred             cCCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPR--KP--GMTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                      +...|++|..||...  .+  ..+..   ..+..|+.-...+.+.+.++- .++.||++|..
T Consensus       126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            346799999998532  11  22322   335566554444444443321 24566666654

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=95.29  E-value=0.092  Score=52.12  Aligned_cols=36  Identities=28%  Similarity=0.473  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |.+|+.++..|+..|+ .+|+|+|.+.
T Consensus        40 ~~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            3568999998 9999999999999885 5999999873

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.26  E-value=0.18  Score=47.13  Aligned_cols=38  Identities=21%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC---------CcEEEEEecCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL---------VSRLALYDIAN   64 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~---------~~ei~L~D~~~   64 (358)
                      .++.||.|||+ |.+|+.++..|+..++         ..+|+++|.+.
T Consensus         9 ~~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~   55 (244)
T TIGR03736         9 SRPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT   55 (244)
T ss_pred             hCCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence            36679999998 9999999999998642         12999999864

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=95.25  E-value=0.061  Score=47.57  Aligned_cols=101  Identities=24%  Similarity=0.395  Sum_probs=63.0

Q ss_pred             cccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCE
Q 018314           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        20 ~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      .+....-..++|+|+|. |.+|+.++..+..-+.  +|+.||+......  ...+.    .+..    .++++.++.||+
T Consensus        28 ~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~~----~~l~ell~~aDi   94 (178)
T PF02826_consen   28 RFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVEY----VSLDELLAQADI   94 (178)
T ss_dssp             TTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEEE----SSHHHHHHH-SE
T ss_pred             CCCccccCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----ccee----eehhhhcchhhh
Confidence            34444556789999997 9999999999996666  9999998763222  11111    1222    356788999999


Q ss_pred             EEEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          100 VIIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       100 VIi~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      |++..- .+...+.       -|       .+.+++..+++++|+++--
T Consensus        95 v~~~~plt~~T~~l-------i~-------~~~l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen   95 VSLHLPLTPETRGL-------IN-------AEFLAKMKPGAVLVNVARG  129 (178)
T ss_dssp             EEE-SSSSTTTTTS-------BS-------HHHHHTSTTTEEEEESSSG
T ss_pred             hhhhhcccccccee-------ee-------eeeeeccccceEEEeccch
Confidence            999753 2222232       11       1234445678888887654

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.045  Score=52.64  Aligned_cols=59  Identities=19%  Similarity=0.390  Sum_probs=47.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||.+|.||..++..|...+.  ++.+++...                       .++.+.++.||+||.+.
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsav  210 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAV  210 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEec
Confidence            34577999999866999999999998886  888887542                       13457789999999998


Q ss_pred             CCCC
Q 018314          105 GVPR  108 (358)
Q Consensus       105 g~~~  108 (358)
                      |.|.
T Consensus       211 g~~~  214 (301)
T PRK14194        211 GRPR  214 (301)
T ss_pred             CChh
Confidence            7653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=95.24  E-value=0.085  Score=54.79  Aligned_cols=68  Identities=25%  Similarity=0.371  Sum_probs=48.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .+-..++|+|+|. |.+|+.+|..+...+.  +|+.||.........++.       +..   .+++.+.+++||+|++.
T Consensus       134 ~~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  200 (525)
T TIGR01327       134 TELYGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVH  200 (525)
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEc
Confidence            3445679999997 9999999999886665  999999753222222221       221   13467889999999997


Q ss_pred             C
Q 018314          104 A  104 (358)
Q Consensus       104 a  104 (358)
                      .
T Consensus       201 l  201 (525)
T TIGR01327       201 T  201 (525)
T ss_pred             c
Confidence            5

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=95.19  E-value=0.043  Score=53.65  Aligned_cols=71  Identities=23%  Similarity=0.350  Sum_probs=46.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++||+|+||+|.+|..++..|...++ ..||..+-.+...++..++..    ..+... ...  ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~-d~~--~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVE-DLT--TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEe-eCC--HHHHcCCCEEEECCC
Confidence            46999999999999999999988653 347777765443333333321    123332 111  235689999999865

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.18  E-value=0.33  Score=47.48  Aligned_cols=116  Identities=19%  Similarity=0.305  Sum_probs=70.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCC-CCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-aDiVIi~  103 (358)
                      .+..+|+|+|+ |.+|......+...+  .+|+-+|+++. ...+.+|..   ..-+.. . ..|..+++++ +|+||.+
T Consensus       165 ~pG~~V~I~G~-GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lGA---d~~i~~-~-~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         165 KPGKWVAVVGA-GGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLGA---DHVINS-S-DSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhCC---cEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence            45679999998 889888777776566  39999999873 344454531   111221 1 1222344443 9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-Cc-c-hHHHHHHHHHhCCCCCCceEeec
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NS-T-VPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-d~-~-t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ++ +                  ..+-..++-..+++.++.+.+|- .. . ..+...+      +...+|.|+.
T Consensus       237 v~-~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li------~~~~~i~GS~  285 (339)
T COG1064         237 VG-P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLI------LKEISIVGSL  285 (339)
T ss_pred             CC-h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhh------hcCeEEEEEe
Confidence            85 2                  12233444456788999999994 33 2 1121111      3457888983

>PRK06114 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.24  Score=45.67  Aligned_cols=115  Identities=19%  Similarity=0.239  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      .+.+.|+||+|.+|..++..|+..+.  ++++.|.+..   .....++.+..  .++..+. +-.|   +.++       
T Consensus         8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~   83 (254)
T PRK06114          8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTDDGLAETAEHIEAAG--RRAIQIAADVTSKADLRAAVARTEAE   83 (254)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999886  8999997642   22233343322  1222221 1111   1222       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +..-|++|.++|.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.+++++.-
T Consensus        84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  146 (254)
T PRK06114         84 LGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG-GGSIVNIASM  146 (254)
T ss_pred             cCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC-CcEEEEECch
Confidence            23459999999864321   1122   2234445433    355555554432 3455655443

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.17  E-value=0.11  Score=54.95  Aligned_cols=137  Identities=13%  Similarity=0.147  Sum_probs=82.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVIi~  103 (358)
                      ..+|.|+|. |.+|+.++..|...++  +++.+|.|+..  +..+.+...  ++-.. +.+|.    ...+++||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~--~v~~G-Dat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYGY--KVYYG-DATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCCC--eEEEe-eCCCHHHHHhcCCccCCEEEEE
Confidence            468999998 9999999999998887  89999987622  222333221  22221 12221    1347899999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      -+               |-+.-..++..+++++|+..++. +.||.+.-      .++..|   .+.++-=+...+..+-
T Consensus       472 ~~---------------d~~~n~~i~~~~r~~~p~~~IiaRa~~~~~~~------~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CN---------------EPEDTMKIVELCQQHFPHLHILARARGRVEAH------ELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eC---------------CHHHHHHHHHHHHHHCCCCeEEEEeCCHHHHH------HHHhCC---CCEEEccHHHHHHHHH
Confidence            52               22233345666788899876654 45554321      245555   3445433443345555


Q ss_pred             HHHHHHcCCCCCCC
Q 018314          183 TFYAGKANVNVAEV  196 (358)
Q Consensus       183 ~~la~~l~v~~~~v  196 (358)
                      ...=..+|+++.++
T Consensus       528 ~~~L~~lg~~~~~~  541 (601)
T PRK03659        528 RKTLVSLGMHPHQA  541 (601)
T ss_pred             HHHHHHcCCCHHHH
Confidence            55556777776555

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.17  E-value=0.081  Score=53.24  Aligned_cols=123  Identities=17%  Similarity=0.231  Sum_probs=74.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHH-H-HhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVA-A-DVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~-~-dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ||.|+|. |..|.++|..|...+.  +|...|..... ... . .+....   .++.+.+ .+ .+.+.++|+||.+.|+
T Consensus         1 ~~~~iG~-G~~G~a~a~~l~~~G~--~V~~sD~~~~~~~~~~~~~~~~~~---gi~~~~g-~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGL-GKTGRAVARFLHKKGA--EVTVTDLKPNEELEPSMGQLRLNE---GSVLHTG-LH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEe-CHhHHHHHHHHHHCCC--EEEEEeCCCCccchhHHHHHhhcc---CcEEEec-Cc-hHHhccCCEEEECCCC
Confidence            6899997 9999999999999988  89999986521 111 1 122111   2333323 23 3567899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      |...- .......++++++.+. +.+.+.. +..+|-+|=..+  .+|.+++++++..|
T Consensus        73 ~~~~p-~~~~a~~~~i~i~~~~-e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        73 PPDHP-LVQAAAKRGIPVVGDI-ELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCH-HHHHHHHCCCcEEEHH-HHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            75321 1222234566666443 2222232 223455555544  67778888888776

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=95.16  E-value=0.063  Score=50.73  Aligned_cols=88  Identities=14%  Similarity=0.120  Sum_probs=57.8

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCCCCC-
Q 018314           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGVPRK-  109 (358)
Q Consensus        33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~~~~-  109 (358)
                      |+||+|++|++++..|...+.  ++++.....    ..|+.+            ..++.+.++  +.|+||++|+.... 
T Consensus         2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~~   63 (306)
T PLN02725          2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGGI   63 (306)
T ss_pred             cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeeccc
Confidence            789999999999999988775  444443221    112211            112333333  57999999975321 


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          110 --PGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       110 --~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                        ......+....|......+.+.+++....
T Consensus        64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~   94 (306)
T PLN02725         64 HANMTYPADFIRENLQIQTNVIDAAYRHGVK   94 (306)
T ss_pred             chhhhCcHHHHHHHhHHHHHHHHHHHHcCCC
Confidence              12234567889999999999999987643

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=95.15  E-value=0.099  Score=52.26  Aligned_cols=36  Identities=28%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |++|+.++..|+..|+ ++|.|+|-+.
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gv-g~i~lvD~D~   76 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGV-GTLGIVEFDV   76 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCCE
Confidence            3459999998 9999999999999985 5899999864

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.14  E-value=0.11  Score=51.28  Aligned_cols=35  Identities=37%  Similarity=0.627  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |++|+.++..|+..|+ ++|.|+|.+.
T Consensus        28 ~~~VlivG~-GGlGs~~a~~La~~Gv-g~i~lvD~D~   62 (355)
T PRK05597         28 DAKVAVIGA-GGLGSPALLYLAGAGV-GHITIIDDDT   62 (355)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            459999998 9999999999999885 5899999864

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.12  E-value=0.056  Score=48.69  Aligned_cols=78  Identities=22%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH--HHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV--AADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~--~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +-..++|+|||.+.-||..++.+|...+-  .+..+|++...-.  ...+.|...+  ..-  -+.++.+.++.||+||.
T Consensus        59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t~--~~~--~~~~l~~~~~~ADIVIs  132 (197)
T cd01079          59 RLYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKHH--VTD--EEAMTLDCLSQSDVVIT  132 (197)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCccccccccccccccccc--ccc--hhhHHHHHhhhCCEEEE
Confidence            45567999999988999999999998775  8999998651100  0011121110  000  01125677899999999


Q ss_pred             cCCCCC
Q 018314          103 PAGVPR  108 (358)
Q Consensus       103 ~ag~~~  108 (358)
                      +.|.|.
T Consensus       133 AvG~~~  138 (197)
T cd01079         133 GVPSPN  138 (197)
T ss_pred             ccCCCC
Confidence            998764

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.31  Score=44.68  Aligned_cols=35  Identities=23%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|++|..++..|...+.  .|++.|.+.
T Consensus         8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~   42 (252)
T PRK07035          8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL   42 (252)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            35899999999999999999998886  899999865

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.05  E-value=0.1  Score=47.18  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |+++.|+||+|.+|+.++..|+..+.  +|+++|.+.
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~   35 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDA   35 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCH
Confidence            34799999999999999999988876  899999865

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.05  E-value=0.14  Score=52.31  Aligned_cols=126  Identities=17%  Similarity=0.129  Sum_probs=77.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .+||+|+|. |.-|.+.+..|...+.  ++.++|.++.  .....+|.+..  ..+.   +..+ .+.+.++|+||.+.|
T Consensus         8 ~~~v~v~G~-G~sG~~~~~~l~~~g~--~v~~~d~~~~~~~~~~~~l~~~~--~~~~---~~~~-~~~~~~~d~vV~Spg   78 (468)
T PRK04690          8 GRRVALWGW-GREGRAAYRALRAHLP--AQALTLFCNAVEAREVGALADAA--LLVE---TEAS-AQRLAAFDVVVKSPG   78 (468)
T ss_pred             CCEEEEEcc-chhhHHHHHHHHHcCC--EEEEEcCCCcccchHHHHHhhcC--EEEe---CCCC-hHHccCCCEEEECCC
Confidence            458999998 9999999999998887  8999997652  11222344311  1111   1122 355789999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      +|...-. .......+++++.++--.+....    ....+|-+|=..+  .+|.+++++++..|
T Consensus        79 I~~~~p~-~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  141 (468)
T PRK04690         79 ISPYRPE-ALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAG  141 (468)
T ss_pred             CCCCCHH-HHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcC
Confidence            8753221 22233566777754443232221    1123455555544  77788888888766

>PRK06484 short chain dehydrogenase; Validated

Probab=95.04  E-value=0.14  Score=52.62  Aligned_cols=157  Identities=19%  Similarity=0.223  Sum_probs=81.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEE-ecCCccccc-------cCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQLGQA-------LED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d~~~a-------l~~   96 (358)
                      ..+++.|+||+|.+|..++..|+..+.  +|++.|+++.  .....++....  ..+..- ++.++..+.       +..
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDEH--LSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999886  8999998652  22222221110  001110 001112122       245


Q ss_pred             CCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           97 SDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        97 aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      -|++|..||...  .+  ..+.   ...+..|+.-...+.+.+..+ ...+.||+++......           + .+..
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~-~~~~  411 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL-----------A-LPPR  411 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC-----------C-CCCC
Confidence            799999998742  22  2222   233455544443333333322 2346777776654321           1 2333


Q ss_pred             ceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      -.++.+.-.-..+-+.+++.++  +..|++..+
T Consensus       412 ~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  442 (520)
T PRK06484        412 NAYCASKAAVTMLSRSLACEWA--PAGIRVNTV  442 (520)
T ss_pred             chhHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            3344433223345566666653  445555444

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.23  Score=46.71  Aligned_cols=111  Identities=19%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc------cCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------LEDSD   98 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------l~~aD   98 (358)
                      +.|+|| |++|..++..|. .+.  +|++.|.++.  .....++.+..  .++..+. +-.|   ..+.      +...|
T Consensus         5 ~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id   78 (275)
T PRK06940          5 VVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVT   78 (275)
T ss_pred             EEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCC
Confidence            555665 899999999886 554  8999998652  22223333211  1222221 1112   1111      24689


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~  148 (358)
                      ++|..||.... ..+-...+..|+.-...+.+.+.++ .+++.+++++...
T Consensus        79 ~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~  128 (275)
T PRK06940         79 GLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQS  128 (275)
T ss_pred             EEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecc
Confidence            99999997521 2233445566654444444433332 1234445555444

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=95.01  E-value=0.08  Score=53.36  Aligned_cols=104  Identities=18%  Similarity=0.305  Sum_probs=63.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +..+|+|+|+ |.+|..++..|...+. .+|+++|.+...  ..+.++..    ..+.    ..++.+++.++|+||.+.
T Consensus       179 ~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~----~~i~----~~~l~~~l~~aDvVi~aT  248 (417)
T TIGR01035       179 KGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG----EAVK----FEDLEEYLAEADIVISST  248 (417)
T ss_pred             cCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC----eEee----HHHHHHHHhhCCEEEECC
Confidence            4569999998 9999999998888763 489999986522  22222221    1111    135567889999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t  152 (358)
                      +.|..- .+        .+.++..   +..-....+++-+++|-|+=.
T Consensus       249 ~s~~~i-i~--------~e~l~~~---~~~~~~~~~viDla~Prdid~  284 (417)
T TIGR01035       249 GAPHPI-VS--------KEDVERA---LRERTRPLFIIDIAVPRDVDP  284 (417)
T ss_pred             CCCCce-Ec--------HHHHHHH---HhcCCCCeEEEEeCCCCCCCh
Confidence            654311 11        1111111   111112457888899988654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=95.01  E-value=0.3  Score=44.26  Aligned_cols=72  Identities=11%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -+.+||.|||+ |.||...+..|...+.  +|++++.+.... ..++.+..   .+....... .++.+.++|+||.+-+
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~~-l~~l~~~~---~i~~~~~~~-~~~~l~~adlViaaT~   79 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTEN-LVKLVEEG---KIRWKQKEF-EPSDIVDAFLVIAATN   79 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCHH-HHHHHhCC---CEEEEecCC-ChhhcCCceEEEEcCC
Confidence            34569999998 9999999998888875  899998643222 22333221   233221111 1357899999888753

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=94.99  E-value=0.071  Score=50.86  Aligned_cols=74  Identities=9%  Similarity=0.112  Sum_probs=47.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +..++.|+|| |.++.++++.|...+. .+|.+++++..  +..+.++....   .+......+++.+.+.++|+||.+-
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~~---~~~~~~~~~~~~~~~~~~DiVInaT  198 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQVG---VITRLEGDSGGLAIEKAAEVLVSTV  198 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhcC---cceeccchhhhhhcccCCCEEEECC
Confidence            3568999998 9999999999998774 58999998652  33333332211   1221111122335668999999974


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      .
T Consensus       199 p  199 (282)
T TIGR01809       199 P  199 (282)
T ss_pred             C
Confidence            3

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.99  E-value=0.23  Score=47.04  Aligned_cols=35  Identities=26%  Similarity=0.497  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..+|+|+|+ |.||+.++..|+..|+ .+|.|+|.+.
T Consensus        30 ~s~VlVvG~-GGVGs~vae~Lar~GV-g~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGI-GGVGSWAAEALARTGI-GAITLIDMDD   64 (268)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence            348999998 9999999999999985 5899999864

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.99  E-value=0.17  Score=48.45  Aligned_cols=74  Identities=22%  Similarity=0.274  Sum_probs=50.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------------------HHHHHHhhcCCCCccEEEEec
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------------------PGVAADVGHINTRSEVAGYMG   86 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------------------~~~~~dl~~~~~~~~v~~~~~   86 (358)
                      ..||.|+|+ |++|..++..|++.|+ ..|.|+|.+..                     +.-+..|.......+++.+..
T Consensus        19 ~s~VLIvG~-gGLG~EiaKnLalaGV-g~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~   96 (286)
T cd01491          19 KSNVLISGL-GGLGVEIAKNLILAGV-KSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTG   96 (286)
T ss_pred             cCcEEEEcC-CHHHHHHHHHHHHcCC-CeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence            458999998 9999999999999996 68999998640                     011112222233345555443


Q ss_pred             CCccccccCCCCEEEEcC
Q 018314           87 NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~a  104 (358)
                      ..+ .+.+.+.|+||.+.
T Consensus        97 ~~~-~~~l~~fdvVV~~~  113 (286)
T cd01491          97 PLT-TDELLKFQVVVLTD  113 (286)
T ss_pred             cCC-HHHHhcCCEEEEec
Confidence            222 46789999998885

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.98  E-value=0.06  Score=47.45  Aligned_cols=56  Identities=27%  Similarity=0.507  Sum_probs=43.4

Q ss_pred             CCceEEEEcCCCC-hHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGG-IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~-vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ...||.|+|+ |. +|..++..|...+.  ++.+.+.+.                       +++.+.+++||+||.+.+
T Consensus        43 ~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsat~   96 (168)
T cd01080          43 AGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVAVG   96 (168)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEcCC
Confidence            4569999998 86 58889999988776  688888531                       235567899999999887


Q ss_pred             CCC
Q 018314          106 VPR  108 (358)
Q Consensus       106 ~~~  108 (358)
                      .|.
T Consensus        97 ~~~   99 (168)
T cd01080          97 KPG   99 (168)
T ss_pred             CCc
Confidence            653

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=94.97  E-value=0.24  Score=45.35  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|.+|+.++..|+..+.  +++++|.+.
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            346899999999999999999998887  899998764

>PRK05693 short chain dehydrogenase; Provisional

Probab=94.95  E-value=0.088  Score=49.19  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.+.+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~   35 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA   35 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            5799999999999999999998886  899999765

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.94  E-value=0.17  Score=52.27  Aligned_cols=107  Identities=21%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCC--CCccE-----EEEe--cCCcc-----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHIN--TRSEV-----AGYM--GNDQL-----   90 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~--~~~~v-----~~~~--~~~d~-----   90 (358)
                      .++.||.|+|+ |.+|...+..+...|.  +|+.+|+++ ...++..+....  .+..-     .+|.  -+.+.     
T Consensus       163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~  239 (509)
T PRK09424        163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEM  239 (509)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHH
Confidence            46789999998 9999998888887775  799999987 344444443110  00000     0000  01111     


Q ss_pred             ---ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           91 ---GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        91 ---~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                         .+.++++|+||.++|.|.++--         .-+.++   .++...|.+.++.++.+
T Consensus       240 ~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~---~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        240 ALFAEQAKEVDIIITTALIPGKPAP---------KLITAE---MVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHHHhccCCCCEEEECCCCCcccCc---------chHHHH---HHHhcCCCCEEEEEccC
Confidence               1224789999999998653221         001133   33444578888877764

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=94.93  E-value=0.43  Score=43.27  Aligned_cols=34  Identities=24%  Similarity=0.273  Sum_probs=30.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++|.|+||+|.+|+.++..|+..+.  .+++.|.+.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            3789999999999999999998886  899998874

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.91  E-value=0.55  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.379  Sum_probs=27.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIA   63 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~   63 (358)
                      .+++.|+||+|.+|..++..|+..+.  ++++. +.+
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~   38 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARS   38 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            35899999999999999999999886  66654 443

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.90  E-value=1  Score=41.46  Aligned_cols=116  Identities=16%  Similarity=0.166  Sum_probs=65.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc------ccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL------GQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~------~~al~~a   97 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.|.+..  .....++.... ..++.... +-+|.      .+.+...
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~i   82 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDI   82 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCC
Confidence            346899999999999999999998886  8999998652  22222333211 11222221 11121      1134579


Q ss_pred             CEEEEcCCCCC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           98 DVVIIPAGVPR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        98 DiVIi~ag~~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |++|.++|... .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+++++.
T Consensus        83 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         83 DILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            99999998642 11  1222   223444544    4455566665443 345665544

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.89  E-value=0.053  Score=53.31  Aligned_cols=74  Identities=26%  Similarity=0.314  Sum_probs=43.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHH-H-hhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAA-D-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~-d-l~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|+||+|.+|..++..|...+.. +++ +++.+...++.. + ..+......+.. . ..|..+.++++|+|+++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999998877644 666 777654222211 1 111111001121 1 1133344468999999753

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.88  E-value=0.047  Score=53.67  Aligned_cols=73  Identities=18%  Similarity=0.282  Sum_probs=47.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..++||+|+||+|.+|..+...|..++ +..++.++......++..+...    ..+...  ..+ .+++.++|+||+++
T Consensus         5 ~~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~   77 (344)
T PLN02383          5 ENGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSA   77 (344)
T ss_pred             CCCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECC
Confidence            356799999999999999998888754 3457776655443333222221    122221  112 25678999999987


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      +
T Consensus        78 p   78 (344)
T PLN02383         78 G   78 (344)
T ss_pred             C
Confidence            5

>PRK08177 short chain dehydrogenase; Provisional

Probab=94.88  E-value=0.15  Score=46.10  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=30.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++|.|+||+|.+|+.++..|+..+.  +|+++|.+.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~   35 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP   35 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence            5799999999999999999999886  899999876

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=94.86  E-value=0.12  Score=48.02  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|++.|.++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~   40 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA   40 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            345899999999999999999999887  899999865

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=94.86  E-value=0.094  Score=49.89  Aligned_cols=103  Identities=23%  Similarity=0.274  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhc--CCCCccEEEEecC-CccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGH--INTRSEVAGYMGN-DQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~--~~~~~~v~~~~~~-~d~~~al~~aDiVIi  102 (358)
                      .+.||+.||. |..-.+........+....++-+|+++ +...+..+-.  .....+++..++. .+...++++.|+|++
T Consensus       120 ~p~rVaFIGS-GPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~l  198 (276)
T PF03059_consen  120 PPSRVAFIGS-GPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFL  198 (276)
T ss_dssp             ---EEEEE----SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE
T ss_pred             ccceEEEEcC-CCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEE
Confidence            4669999996 998888666555545445789999987 3333333322  1112345544321 233346789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVN  142 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~ii  142 (358)
                      +|-+    |++        .+-..++...+.++. |++.++
T Consensus       199 AalV----g~~--------~e~K~~Il~~l~~~m~~ga~l~  227 (276)
T PF03059_consen  199 AALV----GMD--------AEPKEEILEHLAKHMAPGARLV  227 (276)
T ss_dssp             -TT-----S------------SHHHHHHHHHHHS-TTSEEE
T ss_pred             hhhc----ccc--------cchHHHHHHHHHhhCCCCcEEE
Confidence            8732    221        223344555555554 566554

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PRK07201 short chain dehydrogenase; Provisional

Probab=94.85  E-value=0.27  Score=51.93  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++++.++.  .....++....  .++..+. +-.|   ..+++      
T Consensus       370 ~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  445 (657)
T PRK07201        370 VGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILAE  445 (657)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999886  8999998752  22233333221  1232221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----C----CHHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 -EDSDVVIIPAGVPRKPG----M----TRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~g----~----~r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       ...|++|..||......    .    +-...+..|+.-    ++.+.+.+++.. .+.+|+++.
T Consensus       446 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  509 (657)
T PRK07201        446 HGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR-FGHVVNVSS  509 (657)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCEEEEECC
Confidence             36899999998642111    1    112334555443    444555555443 455666654

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.85  E-value=0.05  Score=53.26  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=45.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +|+||+|+||+|.+|..+.-.|...+ ...++.++-..+..|+...+..    ..+... . .+ ..+++++|+|+++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~-~~-~~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-E-VD-SFDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-e-CC-hHHhcCCCEEEEcCC
Confidence            45799999999999999999998653 3457777765443333333332    122221 1 12 134689999999763

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.85  E-value=0.38  Score=43.85  Aligned_cols=33  Identities=24%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI   62 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~   62 (358)
                      +++|.|+||+|++|++++..|+..+.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            46899999999999999999998886  6666543

>PRK07578 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.33  Score=42.95  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |++.|+||+|.+|..++..|+..   .+|++.+.+.. ....|+.+..   .++      ...+.+...|++|..+|..
T Consensus         1 ~~vlItGas~giG~~la~~l~~~---~~vi~~~r~~~-~~~~D~~~~~---~~~------~~~~~~~~id~lv~~ag~~   66 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR---HEVITAGRSSG-DVQVDITDPA---SIR------ALFEKVGKVDAVVSAAGKV   66 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc---CcEEEEecCCC-ceEecCCChH---HHH------HHHHhcCCCCEEEECCCCC
Confidence            47999999999999999999887   38898887541 1112222211   000      0111234689999999864

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=94.82  E-value=0.12  Score=53.59  Aligned_cols=66  Identities=23%  Similarity=0.345  Sum_probs=47.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|+|. |.+|+.++..+..-+.  +|+.||.........++       .+...    ++.+.++.||+|++..
T Consensus       137 ~l~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~l  202 (526)
T PRK13581        137 ELYGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHT  202 (526)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEcc
Confidence            445679999997 9999999999986665  99999975422222211       12221    3567899999999975

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.82  E-value=0.1  Score=52.62  Aligned_cols=104  Identities=24%  Similarity=0.391  Sum_probs=63.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +..+|+|+|+ |.+|..++..|...+ ..+|+++|++...  ..+.++.     ..+..   ..++.+++.++|+||.+.
T Consensus       181 ~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~aT  250 (423)
T PRK00045        181 SGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISST  250 (423)
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEECC
Confidence            4579999998 999999998888766 3589999986522  2233222     11111   134567789999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHH-hhCCCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIA-KYCPNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~-~~~p~a~iiv~tNP~d~~t  152 (358)
                      |.|... .+        .+.++.   .+. +...+.+++-+++|-|+=.
T Consensus       251 ~s~~~~-i~--------~~~l~~---~~~~~~~~~~vviDla~Prdid~  287 (423)
T PRK00045        251 GAPHPI-IG--------KGMVER---ALKARRHRPLLLVDLAVPRDIEP  287 (423)
T ss_pred             CCCCcE-Ec--------HHHHHH---HHhhccCCCeEEEEeCCCCCCcc
Confidence            654311 11        111111   111 1124567888999988654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.79  E-value=0.12  Score=52.23  Aligned_cols=69  Identities=23%  Similarity=0.290  Sum_probs=44.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-CCCCccEEEEec--CCccccc-cCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMG--NDQLGQA-LEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~--~~d~~~a-l~~aDiVIi~a  104 (358)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++...  ..+.+ ..  .++.....  ...++++ +.++|.||++.
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~--~~~~~gd~~~~~~l~~~~~~~a~~vi~~~   73 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLD--VRTVVGNGSSPDVLREAGAEDADLLIAVT   73 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcC--EEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence            68999998 9999999999988887  899999875221  22221 11  01111111  1223334 78999999975

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=94.78  E-value=0.082  Score=50.15  Aligned_cols=70  Identities=26%  Similarity=0.284  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCcEEE-EEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +++||+|||. |.+|..++..|... +-. +++ ++|.+...  +.++.... . ....+   +|+++.+.++|+|++++
T Consensus         5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~--a~~~a~~~-g-~~~~~---~~~eell~~~D~Vvi~t   75 (271)
T PRK13302          5 PELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQR--HADFIWGL-R-RPPPV---VPLDQLATHADIVVEAA   75 (271)
T ss_pred             CeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHH--HHHHHHhc-C-CCccc---CCHHHHhcCCCEEEECC
Confidence            4589999998 99999999888764 322 554 78876522  22222111 0 01111   34556678999999997


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      .
T Consensus        76 p   76 (271)
T PRK13302         76 P   76 (271)
T ss_pred             C
Confidence            4

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.77  E-value=0.38  Score=46.04  Aligned_cols=78  Identities=23%  Similarity=0.329  Sum_probs=49.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  ++++.|...   ....+.++....  .++.... +-.|   ..+.      
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dv~d~~~~~~~~~~~~~   86 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAAG--AKAVAVAGDISQRATADELVATAVG   86 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999886  899998754   222233343221  1232221 1111   1111      


Q ss_pred             cCCCCEEEEcCCCCC
Q 018314           94 LEDSDVVIIPAGVPR  108 (358)
Q Consensus        94 l~~aDiVIi~ag~~~  108 (358)
                      +...|++|..||...
T Consensus        87 ~g~iD~li~nAG~~~  101 (306)
T PRK07792         87 LGGLDIVVNNAGITR  101 (306)
T ss_pred             hCCCCEEEECCCCCC
Confidence            246899999999754

>PRK07877 hypothetical protein; Provisional

Probab=94.77  E-value=0.11  Score=55.71  Aligned_cols=75  Identities=21%  Similarity=0.347  Sum_probs=50.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH---------------HHHhhcCCCCccEEEEec-
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV---------------AADVGHINTRSEVAGYMG-   86 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~---------------~~dl~~~~~~~~v~~~~~-   86 (358)
                      ..||+|+|+ | +|++++..|+..|++++|.|+|-+.     ..-+               +..+.......+|+.+.. 
T Consensus       107 ~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~  184 (722)
T PRK07877        107 RLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG  184 (722)
T ss_pred             cCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence            458999998 8 9999999999999778999999874     1111               111222222345555431 


Q ss_pred             --CCccccccCCCCEEEEcC
Q 018314           87 --NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        87 --~~d~~~al~~aDiVIi~a  104 (358)
                        .++..+.++++|+||-+.
T Consensus       185 i~~~n~~~~l~~~DlVvD~~  204 (722)
T PRK07877        185 LTEDNVDAFLDGLDVVVEEC  204 (722)
T ss_pred             CCHHHHHHHhcCCCEEEECC
Confidence              134555678999999875

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.74  E-value=0.34  Score=43.85  Aligned_cols=35  Identities=20%  Similarity=0.407  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|+.++..|+..+.  +|++.+.++
T Consensus         5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~   39 (238)
T PRK05786          5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE   39 (238)
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            45899999999999999999998887  899999865

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=94.74  E-value=0.33  Score=51.56  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=82.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVIi~  103 (358)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.++..  +..+.+...  ++-... .+|.    ...+.+||.||++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g~--~v~~GD-at~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFGM--KVFYGD-ATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcCC--eEEEEe-CCCHHHHHhcCCCcCCEEEEE
Confidence            468999998 9999999999998887  89999987622  222322221  222212 2222    1356799999988


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKT  183 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~  183 (358)
                      -..+           +.|    ..++..+++..|+..+++-++-..-..     .++..|   -+.++--+...+.++-+
T Consensus       472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~~-----~L~~~G---ad~v~~e~~e~sl~l~~  528 (621)
T PRK03562        472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHYI-----RLRQAG---VEKPERETFEGALKSGR  528 (621)
T ss_pred             eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHHH-----HHHHCC---CCEEehhhHhHHHHHHH
Confidence            5211           234    345556677788876655443332211     234555   34454445444566666


Q ss_pred             HHHHHcCCCCCCC
Q 018314          184 FYAGKANVNVAEV  196 (358)
Q Consensus       184 ~la~~l~v~~~~v  196 (358)
                      .+-+.+|++++++
T Consensus       529 ~~L~~lg~~~~~~  541 (621)
T PRK03562        529 LVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHcCCCHHHH
Confidence            6767887775443

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=94.73  E-value=0.09  Score=51.24  Aligned_cols=67  Identities=24%  Similarity=0.396  Sum_probs=47.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||. |.+|+.++..+..-+.  +|..||+........  .+     ....   ..++++-++.||||++..
T Consensus       139 el~gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~~---~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVVG---VDSLDELLAEADILTLHL  205 (324)
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----ccee---cccHHHHHhhCCEEEEcC
Confidence            445679999998 9999999999987776  999999843221111  11     1111   245778899999999964

>PRK14851 hypothetical protein; Provisional

Probab=94.71  E-value=0.067  Score=57.15  Aligned_cols=76  Identities=24%  Similarity=0.330  Sum_probs=50.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH----------------HHHhhcCCCCccEEEEe
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV----------------AADVGHINTRSEVAGYM   85 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~----------------~~dl~~~~~~~~v~~~~   85 (358)
                      +..||.|+|+ |++|+.++..|+..|+ .+++|+|-+.     ...+                +..+.+.....+|+.+.
T Consensus        42 ~~~~VlIvG~-GGlGs~va~~Lar~GV-G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         42 AEAKVAIPGM-GGVGGVHLITMVRTGI-GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             hcCeEEEECc-CHHHHHHHHHHHHhCC-CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3569999998 9999999999999997 6999999764     1111                11222222234555543


Q ss_pred             c---CCccccccCCCCEEEEcC
Q 018314           86 G---NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        86 ~---~~d~~~al~~aDiVIi~a  104 (358)
                      .   .++..+.++++|+||-+.
T Consensus       120 ~~i~~~n~~~~l~~~DvVid~~  141 (679)
T PRK14851        120 AGINADNMDAFLDGVDVVLDGL  141 (679)
T ss_pred             cCCChHHHHHHHhCCCEEEECC
Confidence            1   134445689999988653

>PRK07411 hypothetical protein; Validated

Probab=94.68  E-value=0.083  Score=52.79  Aligned_cols=36  Identities=28%  Similarity=0.588  Sum_probs=31.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||.|+|+ |++|+.++..|+..|+ .+|.|+|-+.
T Consensus        37 ~~~~VlivG~-GGlG~~va~~La~~Gv-g~l~lvD~D~   72 (390)
T PRK07411         37 KAASVLCIGT-GGLGSPLLLYLAAAGI-GRIGIVDFDV   72 (390)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEECCCE
Confidence            3559999998 9999999999999996 6999999864

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.61  E-value=0.41  Score=43.46  Aligned_cols=71  Identities=17%  Similarity=0.119  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +..||.|||+ |.+|..-+..|...+.  +|+++|.+... ...++.+..   +++......+ ...+.++|+||.+-+
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            3459999998 9999999988888775  89999976432 222333222   3443322222 356899999988754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PLN00203 glutamyl-tRNA reductase

Probab=94.57  E-value=0.12  Score=53.66  Aligned_cols=72  Identities=17%  Similarity=0.272  Sum_probs=48.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ..||+|||+ |.+|..++..|...+. .+|++++++...  ..+..+.  .  ..+... ..+++.+++.+||+||.+-+
T Consensus       266 ~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~La~~~~--g--~~i~~~-~~~dl~~al~~aDVVIsAT~  338 (519)
T PLN00203        266 SARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAALREEFP--D--VEIIYK-PLDEMLACAAEADVVFTSTS  338 (519)
T ss_pred             CCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHhC--C--CceEee-cHhhHHHHHhcCCEEEEccC
Confidence            469999998 9999999988887763 579999987522  2222221  1  122221 12455678999999998754


Q ss_pred             C
Q 018314          106 V  106 (358)
Q Consensus       106 ~  106 (358)
                      .
T Consensus       339 s  339 (519)
T PLN00203        339 S  339 (519)
T ss_pred             C
Confidence            3

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=94.56  E-value=0.11  Score=51.80  Aligned_cols=62  Identities=19%  Similarity=0.365  Sum_probs=44.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      -..++|+|||. |+||+.++..+..-|.  ++..||..... .     + .   ...    ..++++.++.||+|++..
T Consensus       114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~-~-----~-~---~~~----~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD-R-----G-D---EGD----FRSLDELVQEADILTFHT  175 (378)
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc-c-----c-c---ccc----cCCHHHHHhhCCEEEEeC
Confidence            45679999998 9999999999987666  99999964211 0     0 0   011    134678889999999864

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=94.55  E-value=0.091  Score=52.35  Aligned_cols=62  Identities=21%  Similarity=0.323  Sum_probs=44.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      -..++|+|||. |.||+.++..+...|.  +++.||......     .  .   ....    .++++.+++||+|++..
T Consensus       114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~--~---~~~~----~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----E--G---DGDF----VSLERILEECDVISLHT  175 (381)
T ss_pred             cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----c--c---Cccc----cCHHHHHhhCCEEEEeC
Confidence            34579999998 9999999999987776  999999753110     0  0   1111    24667889999999974

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.55  E-value=0.024  Score=54.81  Aligned_cols=69  Identities=14%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecC-CcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIA-NTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~-~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .++|+| ||+|.||..+...|.++++ .++++|++.. ...++...+..    ..+....-+   ++++++.|++++ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence            468999 9999999999999999874 7899999986 44443333322    123332211   357899999999 65

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=94.55  E-value=0.3  Score=46.84  Aligned_cols=154  Identities=16%  Similarity=0.110  Sum_probs=91.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHHHHHhhcCCCCccEEEEec----CCccccccC--CCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVAADVGHINTRSEVAGYMG----NDQLGQALE--DSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~--~aDi   99 (358)
                      |+|.|+|++|++|+++...+.......+|+-+|.-. +  .....++.+..   +.+...+    ...+.+.++  +.|.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~---~~~fv~~DI~D~~~v~~~~~~~~~D~   77 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSP---RYRFVQGDICDRELVDRLFKEYQPDA   77 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCC---CceEEeccccCHHHHHHHHHhcCCCe
Confidence            589999999999999998777766556789999754 2  22233444432   2222211    122234455  6899


Q ss_pred             EEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCC------C--cchHHHHHHHHHhCCCCCC
Q 018314          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPV------N--STVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus       100 VIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~------d--~~t~~~~~~~~~sg~~~~~  168 (358)
                      |+..|....-  .=..-.++++.|+--...+.+..+++...-.++=+ |.-+      +  ..|       ..++ +.|+
T Consensus        78 VvhfAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~Ft-------E~tp-~~Ps  149 (340)
T COG1088          78 VVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFT-------ETTP-YNPS  149 (340)
T ss_pred             EEEechhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcc-------cCCC-CCCC
Confidence            9998753221  11123678899999999999999999754223322 3222      1  121       1233 6676


Q ss_pred             ceEeeccccHHHHHHHHHHHcCCCC
Q 018314          169 KLFGVTTLDVVRAKTFYAGKANVNV  193 (358)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~  193 (358)
                      .-+.-+.-.+--|-+...+.+|++.
T Consensus       150 SPYSASKAasD~lVray~~TYglp~  174 (340)
T COG1088         150 SPYSASKAASDLLVRAYVRTYGLPA  174 (340)
T ss_pred             CCcchhhhhHHHHHHHHHHHcCCce
Confidence            6666543223334555567777754

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=94.51  E-value=0.33  Score=44.34  Aligned_cols=116  Identities=16%  Similarity=0.190  Sum_probs=61.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      ++|.|+||+|++|+.++..|+..+.  ++++.+.+.   ......++....  .++..+. +.+|   ..++       +
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   78 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGW--SVGINYARDAAAAEETADAVRAAG--GRACVVAGDVANEADVIAMFDAVQSAF   78 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999998886  777765433   222223333211  1222221 1111   1111       2


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCHH---HHHHHHHHH----HHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPR--KP--GMTRD---DLFNINAGI----VKDLCSAIAKYC--PNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~~i----~~~i~~~i~~~~--p~a~iiv~tNP~  148 (358)
                      ...|+||..+|...  .+  ..+..   ..+..|..-    ++.+.+.+....  +.+.+|+++...
T Consensus        79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~  145 (248)
T PRK06947         79 GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIA  145 (248)
T ss_pred             CCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchh
Confidence            46899999998532  11  22222   224445433    344455444322  245666666543

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=94.49  E-value=0.25  Score=50.13  Aligned_cols=129  Identities=16%  Similarity=0.133  Sum_probs=73.8

Q ss_pred             eEEEEcCCCChH-HHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           30 KVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        30 KI~IiGA~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      +|-.||- |++| +.+|..|...|.  +|...|.........+|....    ++.+.+ .+....+.++|+||.+.|+|.
T Consensus         1 ~~hfigi-gG~gm~~la~~l~~~G~--~V~~~D~~~~~~~~~~l~~~g----i~~~~~-~~~~~~~~~~d~vV~SpgI~~   72 (448)
T TIGR01081         1 HIHILGI-CGTFMGGLAMIAKQLGH--EVTGSDANVYPPMSTQLEAQG----IEIIEG-FDAAQLEPKPDLVVIGNAMKR   72 (448)
T ss_pred             CEEEEEE-CHHhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCC----CEEeCC-CCHHHCCCCCCEEEECCCCCC
Confidence            4678897 8888 667888888887  899999865221112343322    233222 222233457999999999874


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCCC
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~~  168 (358)
                      .. .........|++++.++--..+...+.-.+|-+|=.++  .+|.+++++++..| +++.
T Consensus        73 ~~-~~~~~a~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g-~~~~  132 (448)
T TIGR01081        73 GN-PCVEAVLNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCG-LKPG  132 (448)
T ss_pred             CC-HHHHHHHHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC-CCCc
Confidence            21 12222335667777555432221111112455555554  78888888888777 5543

Alternate name: murein tripeptide ligase

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=94.48  E-value=0.51  Score=41.01  Aligned_cols=68  Identities=10%  Similarity=0.098  Sum_probs=44.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      -+.+||.|+|| |.||...+..|...+.  +|++++.+-.. ...++.      .+......-+ ++.+.++|+||.+-
T Consensus        11 l~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT   78 (157)
T PRK06719         11 LHNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT   78 (157)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence            34569999998 9999999999988887  89999754332 222332      1111111111 35689999988874

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.47  E-value=0.19  Score=49.03  Aligned_cols=98  Identities=20%  Similarity=0.296  Sum_probs=62.2

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +.......++++|+|. |.+|+.+|..+.  ++..+|+.||.... -+..+..      ..+.    .++++.++.||+|
T Consensus       139 ~~~~~l~gktvGIiG~-GrIG~avA~r~~--~Fgm~v~y~~~~~~-~~~~~~~------~~~y----~~l~ell~~sDii  204 (324)
T COG1052         139 LLGFDLRGKTLGIIGL-GRIGQAVARRLK--GFGMKVLYYDRSPN-PEAEKEL------GARY----VDLDELLAESDII  204 (324)
T ss_pred             ccccCCCCCEEEEECC-CHHHHHHHHHHh--cCCCEEEEECCCCC-hHHHhhc------Ccee----ccHHHHHHhCCEE
Confidence            4444456789999997 999999999998  76679999998753 1111111      1222    1257889999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++..-.  .+         .|-.++-  .+.+++..|.+++||++
T Consensus       205 ~l~~Pl--t~---------~T~hLin--~~~l~~mk~ga~lVNta  236 (324)
T COG1052         205 SLHCPL--TP---------ETRHLIN--AEELAKMKPGAILVNTA  236 (324)
T ss_pred             EEeCCC--Ch---------HHhhhcC--HHHHHhCCCCeEEEECC
Confidence            997521  11         1111111  13455556788877653

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=94.39  E-value=0.15  Score=44.56  Aligned_cols=58  Identities=24%  Similarity=0.464  Sum_probs=40.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -..++|+|||.+..||..++.+|...+.  .+.+.+..                       +.|+++.++.||+||.++|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence            4567999999977899999999998764  55555432                       2345667899999999988


Q ss_pred             CCC
Q 018314          106 VPR  108 (358)
Q Consensus       106 ~~~  108 (358)
                      .|.
T Consensus        89 ~~~   91 (160)
T PF02882_consen   89 KPN   91 (160)
T ss_dssp             STT
T ss_pred             ccc
Confidence            764

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=94.38  E-value=0.098  Score=52.70  Aligned_cols=74  Identities=18%  Similarity=0.227  Sum_probs=50.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      .+||.|+|+ |.+|..++..|...+. .+|.++++....  +..|...........   .+++.+.+.+||+||.+-+.|
T Consensus       181 ~kkvlviGa-G~~a~~va~~L~~~g~-~~I~V~nRt~~r--a~~La~~~~~~~~~~---~~~l~~~l~~aDiVI~aT~a~  253 (414)
T PRK13940        181 SKNVLIIGA-GQTGELLFRHVTALAP-KQIMLANRTIEK--AQKITSAFRNASAHY---LSELPQLIKKADIIIAAVNVL  253 (414)
T ss_pred             CCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEECCCHHH--HHHHHHHhcCCeEec---HHHHHHHhccCCEEEECcCCC
Confidence            458999998 9999999999988774 489999986422  222322110012221   245567899999999987765


Q ss_pred             C
Q 018314          108 R  108 (358)
Q Consensus       108 ~  108 (358)
                      .
T Consensus       254 ~  254 (414)
T PRK13940        254 E  254 (414)
T ss_pred             C
Confidence            4

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=94.38  E-value=0.21  Score=47.23  Aligned_cols=74  Identities=27%  Similarity=0.280  Sum_probs=42.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++||+|+|+.|.||..++..+...+-..=+..+|.........|+....  ....+..+   +|+++...++|+||...
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~---~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT---DDLEAVETDPDVLIDFT   76 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee---CCHHHhcCCCCEEEECC
Confidence            4799999966999999999888766444455677432111111222111  01123332   34444335689998864

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.37  E-value=0.28  Score=50.40  Aligned_cols=126  Identities=18%  Similarity=0.154  Sum_probs=75.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ...||.|+|. |..|.+.+..|...+.  ++..+|.+...  ...+.+..    +....+. +..+.++++|+||.+.|+
T Consensus        11 ~~~~v~V~G~-G~sG~aa~~~L~~~G~--~v~~~D~~~~~--~~~l~~~g----~~~~~~~-~~~~~l~~~D~VV~SpGi   80 (488)
T PRK03369         11 PGAPVLVAGA-GVTGRAVLAALTRFGA--RPTVCDDDPDA--LRPHAERG----VATVSTS-DAVQQIADYALVVTSPGF   80 (488)
T ss_pred             CCCeEEEEcC-CHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHHHHhCC----CEEEcCc-chHhHhhcCCEEEECCCC
Confidence            4568999997 9999999988887786  89999965321  11233322    2222211 123557899999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHh-----hCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAK-----YCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~-----~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      |...-. ....-.++++++.++--..+.     +.+...+|-+|=.++  .+|.+++++++..|
T Consensus        81 ~~~~p~-~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g  143 (488)
T PRK03369         81 RPTAPV-LAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAG  143 (488)
T ss_pred             CCCCHH-HHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            753211 122234566666554443222     222223455555554  77788888888766

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=94.37  E-value=0.2  Score=51.18  Aligned_cols=93  Identities=22%  Similarity=0.248  Sum_probs=62.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ....++|+|+|. |.||..++..+...+.  +|..+|+++... .+..  + .    .+.    .++.++++.||+||.+
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~-G----~~~----~~leell~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--E-G----YQV----VTLEDVVETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--c-C----cee----ccHHHHHhcCCEEEEC
Confidence            345679999998 9999999999987775  899998876322 2221  1 1    111    1345789999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .|.+.               ++.  .+.++...|.+++++++-..
T Consensus       317 tGt~~---------------iI~--~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        317 TGNKD---------------IIT--LEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             CCccc---------------ccC--HHHHhccCCCcEEEEcCCCc
Confidence            65211               111  23555567889999887663

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=94.36  E-value=0.32  Score=39.92  Aligned_cols=35  Identities=40%  Similarity=0.495  Sum_probs=24.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||+|+|++|.+|..++..+...+.+.-..+++.+.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~   35 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASAR   35 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechh
Confidence            68999987999999988888865432233346543

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.36  E-value=0.25  Score=49.69  Aligned_cols=90  Identities=21%  Similarity=0.284  Sum_probs=60.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ...+|+|+|+ |.+|..++..+...+.  +|+.+|+++. ...+..+.   .  .+.      +..++++++|+||.+.|
T Consensus       201 ~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G---~--~~~------~~~e~v~~aDVVI~atG  266 (413)
T cd00401         201 AGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG---Y--EVM------TMEEAVKEGDIFVTTTG  266 (413)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC---C--EEc------cHHHHHcCCCEEEECCC
Confidence            4669999998 9999999999988886  7888998762 23333221   1  111      12467889999999875


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .+               .++..  ..++...+.+++++++.+
T Consensus       267 ~~---------------~~i~~--~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         267 NK---------------DIITG--EHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             CH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence            32               11111  124445678899899876

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=94.33  E-value=0.15  Score=48.66  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           33 VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        33 IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||. |.+|..++..|...++  +|.+||+++..  ..++....    ...   ++++.++++++|+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            5897 9999999999998887  89999987522  22233221    121   234567899999999985

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.33  E-value=0.18  Score=45.58  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|..++..|+..+.  ++++++.+.
T Consensus         3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~   37 (234)
T PRK07577          3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA   37 (234)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999998886  899999865

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.28  E-value=0.17  Score=47.56  Aligned_cols=33  Identities=12%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||.|+||+|.+|+.++..|...+.  +|+...++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~   33 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS   33 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence            589999999999999999998886  788888765

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.27  E-value=0.36  Score=44.67  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=30.2

Q ss_pred             CCceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+.+.|+||+  +.+|..++..|+..+.  +|++.+.++
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~   43 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND   43 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence            34579999997  5899999999999887  899988764

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=94.18  E-value=0.083  Score=51.72  Aligned_cols=72  Identities=21%  Similarity=0.269  Sum_probs=47.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +.+||+|+||+|.+|..+...|..+. +..+|.++..+...|+...+...    .+.... . + +.++.++|+|+++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence            45799999999999999999998853 34588888665433443333211    233321 1 1 234579999999764

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.14  E-value=0.1  Score=51.85  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=49.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEE-EecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++.||.|+|+ |.+|...+..+...+.  +|..+|.+.....  .+.... ...+.. +....++.+.++++|+||.+.+
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~--~l~~~~-g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLR--QLDAEF-GGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHhc-CceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            5678999998 9999999999988886  7999998752211  121111 011211 1111345677899999999875


Q ss_pred             CC
Q 018314          106 VP  107 (358)
Q Consensus       106 ~~  107 (358)
                      .|
T Consensus       240 ~~  241 (370)
T TIGR00518       240 IP  241 (370)
T ss_pred             cC
Confidence            54

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK14852 hypothetical protein; Provisional

Probab=94.13  E-value=0.11  Score=57.21  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=50.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHH----------------HHHhhcCCCCccEEEEe
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGV----------------AADVGHINTRSEVAGYM   85 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~----------------~~dl~~~~~~~~v~~~~   85 (358)
                      +..||+|+|+ |++|+.++..|+..|+ ++|+|+|-+.     ...+                +..+.+.....+|+.+.
T Consensus       331 ~~srVlVvGl-GGlGs~ia~~LAraGV-G~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~  408 (989)
T PRK14852        331 LRSRVAIAGL-GGVGGIHLMTLARTGI-GNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFP  408 (989)
T ss_pred             hcCcEEEECC-cHHHHHHHHHHHHcCC-CeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEe
Confidence            3569999998 9999999999999997 6999999864     1111                11222222234555542


Q ss_pred             c---CCccccccCCCCEEEEcC
Q 018314           86 G---NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        86 ~---~~d~~~al~~aDiVIi~a  104 (358)
                      .   .++..+-++++|+||-+.
T Consensus       409 ~~I~~en~~~fl~~~DiVVDa~  430 (989)
T PRK14852        409 EGVAAETIDAFLKDVDLLVDGI  430 (989)
T ss_pred             cCCCHHHHHHHhhCCCEEEECC
Confidence            1   234445678999999753

>PRK06436 glycerate dehydrogenase; Provisional

Probab=94.11  E-value=0.19  Score=48.47  Aligned_cols=95  Identities=19%  Similarity=0.341  Sum_probs=60.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|+|- |.||+.++..+..-+.  +|+.||.....       + ..  . ..+   .++++.++.||+|++..
T Consensus       119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~-------~-~~--~-~~~---~~l~ell~~aDiv~~~l  181 (303)
T PRK06436        119 LLYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN-------D-GI--S-SIY---MEPEDIMKKSDFVLISL  181 (303)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc-------c-Cc--c-ccc---CCHHHHHhhCCEEEECC
Confidence            345679999997 9999999987765565  99999975311       0 10  1 011   34678899999999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee--CCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS--NPVN  149 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t--NP~d  149 (358)
                      -.  .+         .+..++.  .+.++...|++++|+++  .++|
T Consensus       182 p~--t~---------~T~~li~--~~~l~~mk~ga~lIN~sRG~~vd  215 (303)
T PRK06436        182 PL--TD---------ETRGMIN--SKMLSLFRKGLAIINVARADVVD  215 (303)
T ss_pred             CC--Cc---------hhhcCcC--HHHHhcCCCCeEEEECCCccccC
Confidence            21  11         1111221  33445556788888874  4454

>PLN02494 adenosylhomocysteinase

Probab=94.09  E-value=0.21  Score=50.88  Aligned_cols=94  Identities=23%  Similarity=0.275  Sum_probs=62.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ...+|+|+|. |.+|..++..+...+.  +|+.+|+++.. ..+.+..  .   .+  .    ++.++++++|+||.+.|
T Consensus       253 aGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~G--~---~v--v----~leEal~~ADVVI~tTG  318 (477)
T PLN02494        253 AGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALMEG--Y---QV--L----TLEDVVSEADIFVTTTG  318 (477)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhcC--C---ee--c----cHHHHHhhCCEEEECCC
Confidence            4568999998 9999999999987775  89999987622 2322111  1   11  1    23567899999998765


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      ..               .++.  ...+....+++++++++-+.+.+
T Consensus       319 t~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~eI  347 (477)
T PLN02494        319 NK---------------DIIM--VDHMRKMKNNAIVCNIGHFDNEI  347 (477)
T ss_pred             Cc---------------cchH--HHHHhcCCCCCEEEEcCCCCCcc
Confidence            32               1110  24455566889999998875443

>PLN02306 hydroxypyruvate reductase

Probab=94.04  E-value=0.33  Score=48.49  Aligned_cols=104  Identities=18%  Similarity=0.267  Sum_probs=60.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH---HHhhc----CCC-CccEEEEecCCccccccCC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA---ADVGH----INT-RSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~---~dl~~----~~~-~~~v~~~~~~~d~~~al~~   96 (358)
                      +-..++|+|||. |.+|+.+|..+.. ++..+|.-||........   ..+..    ... ...++.   ..++++.++.
T Consensus       162 ~L~gktvGIiG~-G~IG~~vA~~l~~-~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~L~ell~~  236 (386)
T PLN02306        162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKR---ASSMEEVLRE  236 (386)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHh-cCCCEEEEECCCCchhhhhhhhhhcccccccccccccccc---cCCHHHHHhh
Confidence            445679999997 9999999988742 333489999976421111   01110    000 011111   2467889999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||+|++..  |..+         .|-.++..  +.++...|++++|+++=
T Consensus       237 sDiV~lh~--Plt~---------~T~~lin~--~~l~~MK~ga~lIN~aR  273 (386)
T PLN02306        237 ADVISLHP--VLDK---------TTYHLINK--ERLALMKKEAVLVNASR  273 (386)
T ss_pred             CCEEEEeC--CCCh---------hhhhhcCH--HHHHhCCCCeEEEECCC
Confidence            99999964  2211         22222211  34555568899988763

>PRK13529 malate dehydrogenase; Provisional

Probab=94.04  E-value=0.57  Score=48.68  Aligned_cols=126  Identities=21%  Similarity=0.345  Sum_probs=79.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh----CCCC-----cEEEEEecCC--c------HHHHHHhhcCCCCccEEEE---ec
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIAN--T------PGVAADVGHINTRSEVAGY---MG   86 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~--~------~~~~~dl~~~~~~~~v~~~---~~   86 (358)
                      +..||.|.|| |..|..++.+|..    .|.-     ..|+++|...  .      ......+.+..  ..+...   ..
T Consensus       294 ~d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~--~~~~~~~~~~~  370 (563)
T PRK13529        294 SDQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKR--EELADWDTEGD  370 (563)
T ss_pred             hhcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhc--ccccccccccC
Confidence            4459999998 9999999887765    4542     5899999864  1      11111222211  111100   01


Q ss_pred             CCccccccCCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHh
Q 018314           87 NDQLGQALEDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKA  162 (358)
Q Consensus        87 ~~d~~~al~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~s  162 (358)
                      ..++.++++++  |+.|=+.+.+   |           -+-+++.+.|.+++++.+|+-.|||..  -.++  .++++.+
T Consensus       371 ~~~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tp--e~a~~~T  434 (563)
T PRK13529        371 VISLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATP--EDLIAWT  434 (563)
T ss_pred             CCCHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCH--HHHHHhh
Confidence            24688999999  9988766543   2           134677888888999999998999986  3333  2335543


Q ss_pred             CCCCCCceEeec
Q 018314          163 GTYNEKKLFGVT  174 (358)
Q Consensus       163 g~~~~~kviG~t  174 (358)
                      .   -+-+|+.+
T Consensus       435 ~---Grai~AtG  443 (563)
T PRK13529        435 D---GRALVATG  443 (563)
T ss_pred             c---CCEEEEEC
Confidence            1   25677773

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=94.02  E-value=0.61  Score=42.47  Aligned_cols=114  Identities=18%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      +.+.|+||+|.+|..++..|+..+.  ++++... +..  .....++....  .++.... +-.|   +.++       +
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   79 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGCGPNSPRRVKWLEDQKALG--FDFIASEGNVGDWDSTKAAFDKVKAEV   79 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999886  6777543 221  12222332211  1222111 1112   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|+||.++|.....   ..+   -...+..|..-    .+.+.+.+.+. +.+.+++++..
T Consensus        80 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  141 (246)
T PRK12938         80 GEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVER-GWGRIINISSV  141 (246)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEEech
Confidence            4689999999875321   112   22334555444    44455555443 23456666543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=94.02  E-value=0.22  Score=48.54  Aligned_cols=97  Identities=18%  Similarity=0.137  Sum_probs=59.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||. |.+|..++..+. .++..+|+.||.........++       .++.    .++.+.++.||+|++..
T Consensus       142 ~L~gktvGIiG~-G~IG~~va~~l~-~~fgm~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~  208 (323)
T PRK15409        142 DVHHKTLGIVGM-GRIGMALAQRAH-FGFNMPILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL  208 (323)
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHH-hcCCCEEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence            446679999997 999999998875 3444488888865321111111       1221    24678899999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      -  ..+         .|..++-  .+.++...|++++||++-=
T Consensus       209 p--lt~---------~T~~li~--~~~l~~mk~ga~lIN~aRG  238 (323)
T PRK15409        209 P--LTD---------ETHHLFG--AEQFAKMKSSAIFINAGRG  238 (323)
T ss_pred             C--CCh---------HHhhccC--HHHHhcCCCCeEEEECCCc
Confidence            2  111         1222221  1234445689998887544

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=93.99  E-value=0.37  Score=48.72  Aligned_cols=92  Identities=20%  Similarity=0.221  Sum_probs=60.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ...+|+|+|+ |.+|..++..+...+.  +|+.+|+++... .+..  + ..  .+      .++.++++++|+||.+.|
T Consensus       211 ~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G~--~v------~~l~eal~~aDVVI~aTG  276 (425)
T PRK05476        211 AGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-GF--RV------MTMEEAAELGDIFVTATG  276 (425)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-CC--Ee------cCHHHHHhCCCEEEECCC
Confidence            4668999998 9999999999988776  899999886322 1111  1 11  11      123577899999998764


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      .               ..++.  ...++...+.+++++++-+.+
T Consensus       277 ~---------------~~vI~--~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        277 N---------------KDVIT--AEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             C---------------HHHHH--HHHHhcCCCCCEEEEcCCCCC
Confidence            2               11221  123444557788888876654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.99  E-value=0.14  Score=49.03  Aligned_cols=58  Identities=21%  Similarity=0.444  Sum_probs=44.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -..++|+|||+++.||..++..|...+.  ++..++.+.                       .++.+.+++||+||.+.|
T Consensus       156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~t-----------------------~~l~~~~~~ADIVIsAvg  210 (286)
T PRK14175        156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSRS-----------------------KDMASYLKDADVIVSAVG  210 (286)
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCCc-----------------------hhHHHHHhhCCEEEECCC
Confidence            4567999999844499999999987764  676666321                       245677899999999998


Q ss_pred             CCC
Q 018314          106 VPR  108 (358)
Q Consensus       106 ~~~  108 (358)
                      .|.
T Consensus       211 ~p~  213 (286)
T PRK14175        211 KPG  213 (286)
T ss_pred             CCc
Confidence            763

>PRK06123 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.81  Score=41.65  Aligned_cols=115  Identities=17%  Similarity=0.200  Sum_probs=61.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCC---cccccc-------C
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GND---QLGQAL-------E   95 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al-------~   95 (358)
                      .+.|+||+|.+|+.++..|+..+.  .+++.+.+.   ......++....  .++..+. +-+   ++.+++       .
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   79 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRNRDAAEAVVQAIRRQG--GEALAVAADVADEADVLRLFEAVDRELG   79 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCCHHHHHHHHHHHHhCC--CcEEEEEeccCCHHHHHHHHHHHHHHhC
Confidence            589999999999999999998886  677777543   112222232211  1122111 111   122222       3


Q ss_pred             CCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHH----HHHHHHHHhhC--CCeEEEEeeCCC
Q 018314           96 DSDVVIIPAGVPRKP----GMTR---DDLFNINAGIV----KDLCSAIAKYC--PNAIVNMISNPV  148 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~----~~i~~~i~~~~--p~a~iiv~tNP~  148 (358)
                      ..|+||.++|.....    ..+.   ...+..|+...    +.+.+.+.+..  .++.+++++...
T Consensus        80 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~  145 (248)
T PRK06123         80 RLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA  145 (248)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence            679999999864321    1222   23355555543    44444443321  245666666654

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.97  E-value=0.12  Score=50.83  Aligned_cols=34  Identities=32%  Similarity=0.373  Sum_probs=26.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD   61 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D   61 (358)
                      |+||+|+||+|.+|..++..|...+...-+.+.|
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~   35 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS   35 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence            4799999999999999998888776443345566

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.95  E-value=1.1  Score=41.96  Aligned_cols=35  Identities=29%  Similarity=0.315  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++.+.|+||+|.+|..++..|+..+.  +|++.+.+.
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~   44 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRV   44 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence            34799999999999999999998886  888888754

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.94  E-value=2.4  Score=39.61  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+.+.|+||++  .+|..++..|+..+.  .|++.|.+.
T Consensus         6 ~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~   42 (262)
T PRK07984          6 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND   42 (262)
T ss_pred             CCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence            34788999854  799999999999886  788988753

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=93.92  E-value=0.3  Score=51.09  Aligned_cols=77  Identities=16%  Similarity=0.144  Sum_probs=52.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----H--HHHHHhhcC-CCCccEEEEe--cCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----P--GVAADVGHI-NTRSEVAGYM--GNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~--~~~~dl~~~-~~~~~v~~~~--~~~d~~~al~~a   97 (358)
                      +..||+|+|. |.+|+++...|+..|+ .+|+.+|.+..    .  ++..++.+. ....+++...  ...|+.+.+++.
T Consensus       128 R~akVlVlG~-Gg~~s~lv~sL~~sG~-~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~  205 (637)
T TIGR03693       128 RNAKILAAGS-GDFLTKLVRSLIDSGF-PRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPA  205 (637)
T ss_pred             hcccEEEEec-CchHHHHHHHHHhcCC-CcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCC
Confidence            5679999997 9999999999999985 37888877651    1  122222221 2222333322  346788899999


Q ss_pred             CEEEEcCC
Q 018314           98 DVVIIPAG  105 (358)
Q Consensus        98 DiVIi~ag  105 (358)
                      |+||.++.
T Consensus       206 DiVi~vsD  213 (637)
T TIGR03693       206 DWVLYVSD  213 (637)
T ss_pred             cEEEEECC
Confidence            99999875

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=93.90  E-value=0.19  Score=42.99  Aligned_cols=58  Identities=29%  Similarity=0.457  Sum_probs=44.8

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-+.++|+|+|.+..+|..++..|...+.  ++.++|.+.                       .|+++++++||+||.+.
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~t-----------------------~~l~~~v~~ADIVvsAt   79 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWKT-----------------------IQLQSKVHDADVVVVGS   79 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCCC-----------------------cCHHHHHhhCCEEEEec
Confidence            34567999999988999999999987765  676666431                       23456789999999988


Q ss_pred             CCC
Q 018314          105 GVP  107 (358)
Q Consensus       105 g~~  107 (358)
                      |.+
T Consensus        80 g~~   82 (140)
T cd05212          80 PKP   82 (140)
T ss_pred             CCC
Confidence            765

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.90  E-value=0.33  Score=49.53  Aligned_cols=123  Identities=15%  Similarity=0.241  Sum_probs=73.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +..||.|+|. |.-|.+.+..|. .+.  +++++|.+.. .....++.+    .....   ..+ .+.+.++|+||.+.|
T Consensus         5 ~~~~v~v~G~-G~sG~a~~~~L~-~g~--~v~v~D~~~~~~~~~~~~~~----~~~~~---~~~-~~~~~~~d~vV~SPg   72 (454)
T PRK01368          5 TKQKIGVFGL-GKTGISVYEELQ-NKY--DVIVYDDLKANRDIFEELYS----KNAIA---ALS-DSRWQNLDKIVLSPG   72 (454)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHh-CCC--EEEEECCCCCchHHHHhhhc----Cceec---cCC-hhHhhCCCEEEECCC
Confidence            3569999997 999999998888 454  8999995432 111122211    11111   111 245778999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      +|...- ........+++++.++--.. +..++..+|-+|=..+  .+|.+++++++..|
T Consensus        73 I~~~~p-~~~~a~~~gi~v~~e~el~~-~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  130 (454)
T PRK01368         73 IPLTHE-IVKIAKNFNIPITSDIDLLF-EKSKNLKFIAITGTNGKSTTTALISHILNSNG  130 (454)
T ss_pred             CCCCCH-HHHHHHHCCCceecHHHHHH-HHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            875321 12223356777765432221 2222323455554444  78888888888877

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=93.89  E-value=0.2  Score=47.79  Aligned_cols=145  Identities=23%  Similarity=0.237  Sum_probs=85.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~  106 (358)
                      |||.|+|++|++|+.+...+. .+.  +++-.|..+     +|+.+..            .+.+.++  .-|+||.+|..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999988877 333  676666543     3333322            1123333  45899999986


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee-CCC--Ccc-hHHHHHHHHHhCCCCCCceEeeccccHHH
Q 018314          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPV--NST-VPIAAEVFKKAGTYNEKKLFGVTTLDVVR  180 (358)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t-NP~--d~~-t~~~~~~~~~sg~~~~~kviG~t~lds~R  180 (358)
                      ..-.  ..++..-+.-|..-...+++..++.+  +++|-+| --+  +.- ..     ++++..-.|..++|-+.+-.. 
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE-  132 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGE-  132 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHH-
Confidence            5432  34567778899999999999999885  4444333 111  100 00     122221235667777643322 


Q ss_pred             HHHHHHHHcCCCCCCC---ceEEEeecCC
Q 018314          181 AKTFYAGKANVNVAEV---NVPVVGGHAG  206 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v---~~~v~G~hg~  206 (358)
                         ...+..+  ++.+   ..|++|++|.
T Consensus       133 ---~~v~~~~--~~~~I~Rtswv~g~~g~  156 (281)
T COG1091         133 ---EAVRAAG--PRHLILRTSWVYGEYGN  156 (281)
T ss_pred             ---HHHHHhC--CCEEEEEeeeeecCCCC
Confidence               2222222  3332   4789999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-110
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-109
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		9e-94
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		5e-93
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		1e-78
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		7e-78
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		7e-78
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		1e-76
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		4e-22
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		2e-19
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		2e-19
1guz_A	310	Structural Basis For Thermophilic Protein Stability		7e-19
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		1e-18
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		2e-18
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		1e-17
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		2e-17
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		2e-17
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		3e-17
1guy_A	309	Structural Basis For Thermophilic Protein Stability		3e-17
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		5e-15
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		2e-13
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		7e-13
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		7e-13
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		1e-12
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		3e-12
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		3e-12
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		3e-12
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		5e-12
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		5e-12
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		8e-12
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		8e-12
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		1e-11
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		1e-11
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-11
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-11
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-11
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		4e-11
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		5e-11
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		6e-11
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		6e-11
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		6e-11
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		9e-11
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		1e-10
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		1e-10
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		2e-10
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-10
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		1e-09
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		3e-09
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		4e-09
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		4e-09
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		4e-09
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		4e-09
1v6a_A	332	Crystal Structure Of L-Lactate Dehydrogenase From C		6e-09
2v65_A	331	Apo Ldh From The Psychrophile C. Gunnari Length = 3		1e-08
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		3e-08
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		3e-08
5ldh_A	334	Structure Of The Active Ternary Complex Of Pig Hear		6e-08
3d0o_A	317	Crystal Structure Of Lactate Dehydrogenase From Sta		7e-08
3h3j_A	317	Crystal Structure Of Lactate Dehydrogenase Mutant (		7e-08
1bmd_A	327	Determinants Of Protein Thermostability Observed In		1e-07
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		1e-07
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		1e-07
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		2e-07
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-07
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-07
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		4e-07
1t2f_A	333	Human B Lactate Dehydrogenase Complexed With Nad+ A		8e-07
1i0z_A	333	Human Heart L-Lactate Dehydrogenase H Chain, Ternar		1e-06
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		4e-06
1ldb_A	317	Structure Determination And Refinement Of Bacillus		4e-06
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-06
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		5e-06
4mdh_A	334	Refined Crystal Structure Of Cytoplasmic Malate Deh		1e-05
5mdh_A	333	Crystal Structure Of Ternary Complex Of Porcine Cyt		1e-05
1ez4_A	318	Crystal Structure Of Non-Allosteric L-Lactate Dehyd		3e-05
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		5e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		5e-05
3d5t_A	331	Crystal Structure Of Malate Dehydrogenase From Burk		5e-05
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		6e-05
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		7e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		7e-05
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		8e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		9e-05
1b8p_A	329	Malate Dehydrogenase From Aquaspirillum Arcticum Le		2e-04
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		2e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		5e-04
7mdh_A	375	Structural Basis For Light Acitvation Of A Chloropl		5e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  393 bits (1010), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/320 (63%), Positives = 234/320 (73%), Gaps = 9/320 (2%)
Query: 3   SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI 62
           SS LR     AK  GA G+        KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+
Sbjct: 28  SSALRRANCRAK-GGAPGF--------KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDV 78
Query: 63  ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINA 122
            N PGV AD+ H++T + V G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INA
Sbjct: 79  VNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINA 138
Query: 123 GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           GIVK LC  IAK CP AIVN+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA 
Sbjct: 139 GIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRAN 198
Query: 183 TFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVV 242
           TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVV
Sbjct: 199 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVV 258
Query: 243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNG 302
           EAKAG GSATLSMAYA   FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG
Sbjct: 259 EAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNG 318
Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           +EEV  LGPL+++E+ GLEK
Sbjct: 319 IEEVYSLGPLNEYERIGLEK 338

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  391 bits (1005), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/296 (65%), Positives = 225/296 (76%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG 86
           P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V G++G
Sbjct: 7   PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLG 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIVN+ISN
Sbjct: 67  QQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISN 126
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF                   HAG
Sbjct: 127 PVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 186
Query: 207 ITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC 266
           +TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   FADAC
Sbjct: 187 VTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADAC 246
Query: 267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           L+GL G   V+EC+FV S VTELPFFASKVRLG+NG+EEV  LGPL+++E+ GLEK
Sbjct: 247 LRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEK 302

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  340 bits (871), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 171/296 (57%), Positives = 215/296 (72%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F                   HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241
Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP 325
           +NG   VVECSFV+S  T+ P+F++ + LGK G+E+ LG+G +S FE++ + +  P
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIP 297

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  337 bits (864), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 171/298 (57%), Positives = 215/298 (72%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN 87
           + KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI T++ V GY+G 
Sbjct: 28  NAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGP 87
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +QL   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP A++ +I+NP
Sbjct: 88  EQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANP 147
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VNST+PI AEVFKK G YN  K+FGVTTLD+VRA TF                   HAG 
Sbjct: 148 VNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGK 207
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TI+PL SQ TPK +   + + ALT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +
Sbjct: 208 TIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV 267
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP 325
             +NG   VVECSFV+S  TE  +F++ + LGK G+E+ LG+G +S FE++ +    P
Sbjct: 268 DAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGIGKVSSFEEKMISDAIP 325

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/306 (55%), Positives = 200/306 (65%), Gaps = 9/306 (2%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAV+GAAGGIGQ LALL+K   P  S LALYDIA  TPGVAAD+ HI T   + GY G 
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPG  R DLFN+NAGIVK L   IA  CPNA + +I+NP
Sbjct: 65  DPT-PALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TVPIAAEV KKAG Y+++KLFGVTTLDV+R++TF                   H+G+
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ       +DE+I ALTKR Q+ GTEVVEAKAG GSATLS   A   F  A +
Sbjct: 184 TILPLLSQ-VEGVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLSXGQAACRFGLALV 242
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG----LEKL 323
           K L G  +V+E ++V+       FFA  V+LGK GVEE+L  G LSDFE+      LE L
Sbjct: 243 KALQG-EEVIEYAYVEGNGEHASFFAQPVKLGKEGVEEILPYGELSDFEKAALDGXLETL 301
Query: 324 NPTFHI 329
           N    I
Sbjct: 302 NSDIQI 307

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  287 bits (734), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/301 (53%), Positives = 198/301 (65%), Gaps = 4/301 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +  T 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 H 328
Sbjct: 300 K 300

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  287 bits (734), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 160/301 (53%), Positives = 198/301 (65%), Gaps = 4/301 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +  T 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 H 328
Sbjct: 300 K 300

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  283 bits (723), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/301 (52%), Positives = 197/301 (65%), Gaps = 4/301 (1%)
Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++ + TF                   H+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSGV 180
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQ-VPGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239
Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF 327
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE +  T 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTL 299
Query: 328 H 328
Sbjct: 300 K 300

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 102/326 (31%), Positives = 160/326 (49%), Gaps = 30/326 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHINTRSE 80
           ++  +KV+V+GA G  G   A L+    L + + L DI      T G A D+      S 
Sbjct: 5   TIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLE---ASP 59
Query: 81  VAGYMGN-----DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
           V G+  N     D    A  DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IAK+
Sbjct: 60  VQGFDANIIGTSDYADTA--DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH 117
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
            PNAI+ +++NPV++   +   VFK+AG   E+ +     LD  R +TF           
Sbjct: 118 SPNAIIVVLTNPVDA---MTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKD 174
Query: 196 XXXXXXXXHAGITILPL----FSQATPKANLA-DEDIKALTKRTQDGGTEVVEAKAGKGS 250
                   H G  ++PL    ++   P   L   E ++A+ +RT+ GG E+V    G GS
Sbjct: 175 ITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGS 232
Query: 251 ATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
           A  + A +     +A LK    V   +     +   ++L +    V LG NG+E+++ L 
Sbjct: 233 AYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL-YLGVPVILGGNGIEKIIELE 291
Query: 311 PLSDFEQEGLEKLNPTFHIRKLFQIL 336
            L+D E+E L++      +R + ++L
Sbjct: 292 LLAD-EKEALDR--SVESVRNVMKVL 314

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 147/314 (46%), Gaps = 37/314 (11%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I + +++ 
Sbjct: 15  KKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF 72
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G    +   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYCPNA V 
Sbjct: 73  G----ENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVI 128
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            I+NP+++ V      FK+       K+ G++  LD  R +                   
Sbjct: 129 CITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVV 184
Query: 202 XXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
             H G  ++PL S  T           +  +    I  + K+T  GG E+VE     GSA
Sbjct: 185 GGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVEL-LKTGSA 242
Query: 252 TLSMAYAGAIFADACLKGLNGVPDVVECSFV---QSTVTELPFFASKVRLGKNGVEEVLG 308
             + A +    A A LK       V+ CS     Q  V  L F    V +GKNG+E+V+ 
Sbjct: 243 FYAPAASAVAMAQAYLK---DSKSVLVCSTYLTGQYNVNNL-FVGVPVVIGKNGIEDVV- 297
Query: 309 LGPLSDFEQEGLEK 322
           +  LSD E+    K
Sbjct: 298 IVNLSDDEKSLFSK 311

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 139/292 (47%), Gaps = 30/292 (10%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+V+I AG+PRKPGMTR+DL ++NAGIV+++   I ++  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   ++K+G   E+ +     LD  R ++F                 
Sbjct: 115 VVVSNPLDIMTHVA---WQKSGLPKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACVL 171
Query: 202 XXHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             H G  ++P+    T    P A+L + E I  L +RT+ GG E+V     +GSA  S A
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIVN-HLKQGSAFYSPA 229
Query: 257 YAGAIFADACLKGLNGVPDVVEC--SFVQSTVTELPFFASKVRLGKNGVEEV 306
            +     ++ +        V+ C  S       +  F    V+LGKNGVE +
Sbjct: 230 TSVVEMVESIVLDRK---RVLTCAVSLDGQYGIDGTFVGVPVKLGKNGVEHI 278

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 147/323 (45%), Gaps = 50/323 (15%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G A D      VG  +T+  V
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTK--V 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--NSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             H G  ++P+    T    P ++ L  E I  L +RT++GG E+VE    +GSA  + A
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPA 229
Query: 257 YAGAIFADA----------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEV 306
            +     ++          C  GL G   +           +  F    V+LG+NGVE++
Sbjct: 230 SSVVEMVESIVLDRKRVLPCAVGLEGQYGI-----------DKTFVGVPVKLGRNGVEQI 278
Query: 307 LGLGPLSDFEQEGLEKLNPTFHI 329
             +    + +Q  L+ L  +  I
Sbjct: 279 YEI----NLDQADLDLLQKSAKI 297

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 147/323 (45%), Gaps = 50/323 (15%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAAD------VGHINTRSEV 81
           K+ V+GA G +G   A  +    L   L L D+      G   D      VG  +T+  +
Sbjct: 2   KITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPVGLFDTK--I 58
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G   ND    A  DSD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+
Sbjct: 59  TG--SNDYADTA--DSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPII 114
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNP++    +A   + ++G   E+ +     LD  R ++F                 
Sbjct: 115 IVVSNPLDIMTHVA---WVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVL 171
Query: 202 XXHAGITILPLFSQAT----PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
             H G  ++P+    T    P ++ L  E I  L +RT++GG E+VE    +GSA  + A
Sbjct: 172 GGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE-HLKQGSAFYAPA 229
Query: 257 YAGAIFADA----------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEV 306
            +     ++          C  GL G          Q  + +  F    V+LG+NGVE++
Sbjct: 230 SSVVEMVESIVLDRKRVLPCAVGLEG----------QYGIDK-TFVGVPVKLGRNGVEQI 278
Query: 307 LGLGPLSDFEQEGLEKLNPTFHI 329
             +    + +Q  L+ L  +  I
Sbjct: 279 YEI----NLDQADLDLLQKSAKI 297

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 132/305 (43%), Gaps = 36/305 (11%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
           RK   L  AG IG  LA L  +  L   + L+DIA     G A D+        V   + 
Sbjct: 5   RKKITLVGAGNIGGTLAHLALIKQL-GDVVLFDIAQGXPNGKALDLLQTCPIEGVDFKVR 63
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + LE+SDVVI+ AGVPRKPG +RDDL  IN  + + +   I   CPNA V  I+N
Sbjct: 64  GTNDYKDLENSDVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVICITN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXXXHA 205
           P++    I     +K     + K+ G    LD  R +TF                   H 
Sbjct: 124 PLD----IXVNXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGGH- 178
Query: 206 GITILPL----------FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
           G T +PL            Q   +  L  E + A+  RT+ GG E+V A    GSA  + 
Sbjct: 179 GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV-ALLKTGSAYYAP 237
Query: 256 AYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDF 315
           A AG   A+               SF++     LP  A+KV+ G  G++E L +G  ++ 
Sbjct: 238 AAAGIQXAE---------------SFLKDKKXILP-CAAKVKAGXYGLDEDLFVGVPTEI 281
Query: 316 EQEGL 320
              G+
Sbjct: 282 SANGV 286

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 142/300 (47%), Gaps = 30/300 (10%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TP-GVAADVGHINTRSEVA 82
           S+   K+A++G+ G IG  LA L  L  L   + L+DIA  TP G   D+      S V 
Sbjct: 4   SMARNKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAE---SSPVD 58
Query: 83  GY-----MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
           G+       ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P
Sbjct: 59  GFDAKFTGANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAP 116
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
            A V  I+NP+++ V  A + F     +    + GV  LD  R + F             
Sbjct: 117 EAFVICITNPLDAMV-WALQKFSGLPAHKVVGMAGV--LDSARFRYFLSEEFNVSVEDVT 173
Query: 198 XXXXXXHAGITILPLFSQAT----PKANL------ADEDIKALTKRTQDGGTEVVEAKAG 247
                 H G +++PL   +T    P  +L      + + +  + +RT+DGG E+V     
Sbjct: 174 VFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIV-GLLK 231
Query: 248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVL 307
            GSA  + A +    A++ LK    V  V      Q  V ++ +      +G NGVE ++
Sbjct: 232 TGSAFYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM-YVGVPTVIGANGVERII 290

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 112/225 (49%), Gaps = 10/225 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 --QATPKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
                P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 CISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEE 288

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEE 288

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEE 288

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP+++   +A
Sbjct: 70  NSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA 129
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITI-LPLFS 214
           AEV   +G   E+ +     LD  R +TF                   H    + LP FS
Sbjct: 130 AEV---SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFS 186
Query: 215 QAT--PKAN-LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLN 271
             +  P +  +A + +  + +RT+ GG E+V      GSA  + A A A   +A LK   
Sbjct: 187 TISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLLK-TGSAYYAPAAATAQMVEAVLKDKK 245
Query: 272 GVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
            V  V      Q  + ++ +F   V LG  GVE++L L PL++ E
Sbjct: 246 RVMPVAAYLTGQYGLNDI-YFGVPVILGAGGVEKILEL-PLNEEE 288

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 87/161 (54%), Gaps = 12/161 (7%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLAL----YDIANTPGVAADV--GHINTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    + I    G+  D+      TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT 183
           I+NPV+  +   A V  K   +   ++FG+ T LD +R K 
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKV 157

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 129/304 (42%), Gaps = 52/304 (17%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H    +  A     
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60
Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D     L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NP
Sbjct: 61  DY--ADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP 118
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           V+    +    F K    + +K+FG  T LD  R +T                    H G
Sbjct: 119 VD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-G 173
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            + +P++S A     P  N+         + ++   ++T+    E++E    KG+   ++
Sbjct: 174 DSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIER---KGATHYAI 230
Query: 256 AYAGAIFADACLKGLNGVPDVVECSFV-QSTVTELPFFASK------------VRLGKNG 302
           A A              V D+VE  F  +  V  L  +               V LGK+G
Sbjct: 231 ALA--------------VADIVESIFFDEKRVLTLSVYLEDYLGVKDLCISVPVTLGKHG 276
Query: 303 VEEV 306
           VE +
Sbjct: 277 VERI 280

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 30/313 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL    T           K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
           A  + A +    A A LK    V P  V C   +  + ++ F      +G  G+E+V+ L
Sbjct: 241 AYYAPALSAITMAQAFLKDEKRVLPCSVYCQG-EYGLHDM-FIGLPAVIGGGGIEQVIEL 298
Query: 310 GPLSDFEQEGLEK 322
             L+  EQE   K
Sbjct: 299 -ELTHEEQECFRK 310

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 139/313 (44%), Gaps = 30/313 (9%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +K+A++G+ G IG  +  L  L  L + + L+D+      G A D     + ++    + 
Sbjct: 9   KKIAMIGS-GMIGGTMGYLCVLREL-ADVVLFDVVTGMPEGKALDDSQATSIADTNVSVT 66
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
           +    + +  SDVVII AG+ + PG      +R+DL   NA I++++   + KYCP A V
Sbjct: 67  SANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFV 126
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXX 200
            +++NP++  V    + F +A    +  + G+   LD  R + F                
Sbjct: 127 IVVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATV 182
Query: 201 XXXHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGS 250
              H G  +LPL    T           K  + +  +  + +RT+  G E+V    G+GS
Sbjct: 183 IGTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGS 240
Query: 251 ATLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
           A  + A +    A A LK    V P  V C   +  + ++ F      +G  G+E+V+ L
Sbjct: 241 AYYAPALSAITMAQAFLKDEKRVLPCSVYCQG-EYGLHDM-FIGLPAVIGGGGIEQVIEL 298
Query: 310 GPLSDFEQEGLEK 322
             L+  EQE   K
Sbjct: 299 -ELTHEEQECFRK 310

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 135/317 (42%), Gaps = 37/317 (11%)
Query: 24  ESVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH-INTRS 79
           E V  R KVA++GA G +G   A  M L    + L L D+      G A D+ H +    
Sbjct: 2   EMVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMG 60
Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +++ Y G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + 
Sbjct: 61  QMSLYAGD---YSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHG 117
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXX 199
           ++ ++SNPV+    I   + K +G    K +   T LD +R +                 
Sbjct: 118 VILVVSNPVD---IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGY 174
Query: 200 XXXXHAGITILPLFSQA------------TPKANLADEDIKALTKRTQDGGTEVVEAKAG 247
               H G + LPL+S               PK N  +ED K + +  +  G  +++    
Sbjct: 175 IIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---N 230
Query: 248 KGSATLSMAYAGAIFADACLKGLN---GVPDVVECSF-VQSTVTELPFFASKVRLGKNGV 303
           KG+    +A +     +  LK  N    V  V+   + ++     LP   +       GV
Sbjct: 231 KGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDVAISLPSIVN-----SEGV 285
Query: 304 EEVLGLGPLSDFEQEGL 320
           +EVL    L+  E+E L
Sbjct: 286 QEVLQFN-LTPEEEEAL 301

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 119/280 (42%), Gaps = 36/280 (12%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGRVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQ----EGLEKLNPTF 327
           F   VRLG NGVEE++    L D+EQ    +  EKL+  +
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 299

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 120/280 (42%), Gaps = 36/280 (12%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 208
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGL----EKLNPTF 327
           F   VRLG NGVEE++    L D+EQ+ +    EKL+  +
Sbjct: 262 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 300

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 119/280 (42%), Gaps = 36/280 (12%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+          + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E K   G+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIERK---GATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQ----EGLEKLNPTF 327
           F   VRLG NGVEE++    L D+EQ    +  EKL+  +
Sbjct: 261 FGVPVRLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 299

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 132/304 (43%), Gaps = 35/304 (11%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG NGVE+
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 306 VLGL 309
           V+ L
Sbjct: 289 VIEL 292

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 143/325 (44%), Gaps = 32/325 (9%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY--- 84
           KV V+GA G +G  +A  +    +   + + DI +    G A D   +   S + G+   
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALD---MRESSPIHGFDTR 57
Query: 85  -MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G +  G   EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 58  VTGTNDYGPT-EDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116
Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           ++NP++    +A E    A  +   ++ G+   LD  R ++F                  
Sbjct: 117 VANPLDVMTYVAYE----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172
Query: 203 XHAGITILPLFSQAT----PKANLADE-DIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
            H G T++PL    T    P   L D+  I+ + +RT+  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLMG--TSAWYAPGA 229
Query: 258 AGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFE 316
           A A   +A LK    + P    C   +  + +L F    V+LG  GVEEV+ +    D +
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDG-EYGLDDL-FIGVPVKLGAGGVEEVIEV----DLD 283
Query: 317 QEGLEKLNPTF-HIRKLFQILQFFR 340
            +   +L  +  H+      LQ  R
Sbjct: 284 ADEKAQLKTSAGHVHSNLDDLQRLR 308

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRS----E 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +    +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 283
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 284 GVEQVIEL 291

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRS----E 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +    +
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 60  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 116 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 171
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 172 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 230
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 231 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 283
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 284 GVEQVIEL 291

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 136/308 (44%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRS----E 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +    +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+  V    ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A   S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 232 HA---SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 284
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 285 GVEQVIEL 292

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 141/326 (43%), Gaps = 45/326 (13%)
Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG----VAADVGHINTRSEVAGYMG 86
           + +LGA G +G   A+++ +      L    IA TPG     A D+ H      V   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLL---IARTPGKPQGEALDLAHAAAELGVDIRIS 57
Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
                + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + +N
Sbjct: 58  GSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV++   +   ++KK G   E+ +     LD  R   +                   H G
Sbjct: 118 PVDAMTYV---MYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH-G 173
Query: 207 ITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAK---AGKGSATLSMAYA 258
             + P+   ++    P  +L + E+I+ +   T + G ++ E +   +  G A   +   
Sbjct: 174 QKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVLTV 233
Query: 259 GAIFADA--------CLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            AI  D+         L+G  G  D+         V E+P       +GK+G+E ++ L 
Sbjct: 234 EAIKRDSKRIYPYSLYLQGEYGYNDI---------VAEVPAV-----IGKSGIERIIEL- 278
Query: 311 PLSDFEQEGLEKLNPTFHIRKLFQIL 336
           PL++ E+   ++      ++KL + L
Sbjct: 279 PLTEDEKRKFDE--AVQAVKKLVETL 302

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 119/280 (42%), Gaps = 36/280 (12%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 93
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 94  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 149
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+ +        + ++ + L    
Sbjct: 150 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 208
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 209 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 261
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQ----EGLEKLNPTF 327
           F   V LG NGVEE++    L D+EQ    +  EKL+  +
Sbjct: 262 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 300

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 119/280 (42%), Gaps = 36/280 (12%)
Query: 64  NTPGVAADVGH-----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLF 118
           +T G AAD  H      NTR    GY   D  G     SDVV+I AG+PR+PG TR DL 
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVRQGGY--EDTAG-----SDVVVITAGIPRQPGQTRIDLA 92
Query: 119 NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD 177
             NA I++D+ S++ ++  + I    SNPV+    +      +AG  + +++ G    LD
Sbjct: 93  GDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLD 148
Query: 178 VVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQAT---PKANLADEDIKALTKRT 234
             R +                     H G   +P+FS+ +        + ++ + L    
Sbjct: 149 SARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDL 207
Query: 235 QDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGV-PDVV--ECSFVQSTVTELPF 291
           Q+   +V+E    KG+     A   A   +A L     V P  V  E  F          
Sbjct: 208 QESAMDVIER---KGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHEDTA---- 260
Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQ----EGLEKLNPTF 327
           F   V LG NGVEE++    L D+EQ    +  EKL+  +
Sbjct: 261 FGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY 299

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 84/154 (54%), Gaps = 17/154 (11%)
Query: 37  AGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGYMGNDQL 90
           AG +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G  G D  
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG--GADY- 64
Query: 91  GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS 150
              L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP++ 
Sbjct: 65  -SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDV 123
Query: 151 TVPIAAEVFKKAGT-YNEKKLFGV-TTLDVVRAK 182
              I   ++K++G   NE  +FG+   LD  R K
Sbjct: 124 MTYI---MWKESGKPRNE--VFGMGNQLDSQRLK 152

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 11/160 (6%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H +      +  +
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V  I+
Sbjct: 63  GTDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICIT 121
Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
           NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 122 NPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 17/163 (10%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  GT--NDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRAKTF 184
            I+NP++    +    F+K       K+ G+   LD  R +TF
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTF 157

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/326 (24%), Positives = 143/326 (43%), Gaps = 31/326 (9%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + ++DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L+D+DVVI+ AG  + PG +     RDDL  +N  I+ ++   I   CPNA
Sbjct: 61  VSGSNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIVGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL  +      + D+++ A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDQELDAIFDRTINTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA-SKVRLGKNGVEEVL 307
            S  ++ A A    A++ ++ L  V  ++  + ++        FA + + +G NGVE+V+
Sbjct: 234 -SPYVAPAAAIIEMAESYIRDLRKV--LICSTLLEGQYGHKDIFAGTPLVIGGNGVEQVI 290
Query: 308 GLGPLSDFEQEGLEKLNPTFHIRKLF 333
            L   +D +++  E +  T  ++ L 
Sbjct: 291 ELQLNADEKKKFDEAVAETSRMKALI 316

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 24/308 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 7   DHQKVILVGDGAVGSSYAFAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 66
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P++PG TR DL N N  I+K +   I     N I  
Sbjct: 67  SAEYSDA-----KDADLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFL 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 122 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 178
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 179 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 237
Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
           +A A A  + A L   N V  +      Q  + +L +  +   + +NG++ +L + PL+D
Sbjct: 238 IATALARISKAILNDENAVLPLSVYMDGQYGINDL-YIGTPAVINRNGIQNILEI-PLTD 295
Query: 315 FEQEGLEK 322
            E+E ++K
Sbjct: 296 HEEESMQK 303

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 26  VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD--IANTPGVAADVGHINTRSEVAG 83
           + + K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H        G
Sbjct: 6   LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH-------CG 58
Query: 84  YMG-----NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
           + G        + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+
Sbjct: 59  FEGLNLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPD 118
Query: 139 -AIVNMISNPVNST 151
              V +I NP + T
Sbjct: 119 CKHVIIIFNPADIT 132

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 131/304 (43%), Gaps = 35/304 (11%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +     
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  SDVVI+ AG  + PG +     R DL  +N  I+ ++   I K CPNA
Sbjct: 61  VSGSNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNA 120
Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXX 198
            + +++NPV+  V    ++  +     + K+ G+   LD  R K +              
Sbjct: 121 FIIVVTNPVDVMV----QLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176
Query: 199 XXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
                H    +L          PL      K  ++D +++A+  RT +   E+V   A  
Sbjct: 177 HIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNLHA-- 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            S  ++ A A    A++ LK L  V     ++E  +  S +    F  + V LG NGVE+
Sbjct: 234 -SPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGANGVEQ 288
Query: 306 VLGL 309
           V+ L
Sbjct: 289 VIEL 292

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 128/308 (41%), Gaps = 24/308 (7%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGH---INTRSEVA 82
           D +  +L   G +G   A  M L  +   + + DI    T G A D+ +     +  ++ 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIY 67
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
               +D      +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 68  SAEYSDA-----KDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           + +NPV+    +    +K +G    + +   T+LD  R +                    
Sbjct: 123 VAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179
Query: 203 XHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATLS 254
            H G T  P++S A        E +KA        L K  +D      E    KG+    
Sbjct: 180 EH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFYG 238
Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
           +A A A  + A L   N V  +      Q  + ++ +  +   + +NG++ +L + PL+D
Sbjct: 239 IATALARISKAILNDENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLTD 296
Query: 315 FEQEGLEK 322
            E+E ++K
Sbjct: 297 HEEESMQK 304

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 128/309 (41%), Gaps = 26/309 (8%)
Query: 28  DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYM 85
           D +  +L   G +G   A  M L  +   + + DI    T G A D+       +   + 
Sbjct: 8   DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDL------EDALPFT 61
Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              ++  A     +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I 
Sbjct: 62  SPKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIF 121
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            + +NPV+    +    +K +G    + +   T+LD  R +                   
Sbjct: 122 LVAANPVDI---LTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAKMVNVDARSVHAYIM 178
Query: 202 XXHAGITILPLFSQATPKANLADEDIKA--------LTKRTQDGGTEVVEAKAGKGSATL 253
             H G T  P++S A        E +KA        L K  +D   +  E    KG+   
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLKGATFY 237
Query: 254 SMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLS 313
            +A A A  + A L   N V  +      Q  + ++ +  +   + +NG++ +L + PL+
Sbjct: 238 GIATALARISKAILNDENAVLPLSVYMDGQYGLNDI-YIGTPAVINRNGIQNILEI-PLT 295
Query: 314 DFEQEGLEK 322
           D E+E ++K
Sbjct: 296 DHEEESMQK 304

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 43/308 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRS----E 80
           P  K+ ++G+ G IG  +A L+    L   + L+DI  N P G A D  H N  +    +
Sbjct: 3   PKAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 60
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V+G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K 
Sbjct: 61  VSGSNTYDDLAGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN 116
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXX 194
           CPNA + +++NPV+    +  ++  +     + K+ G+   LD  R K +          
Sbjct: 117 CPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPR 172
Query: 195 XXXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                    H    +L          PL      K  ++D +++A+  RT +   E+V  
Sbjct: 173 DVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKL-ISDAELEAIFDRTVNTALEIVNL 231
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKN 301
            A    A  +        A++ LK L  V     ++E  +  S +    F  + V LG N
Sbjct: 232 HAAPYVAPAAAIIE---MAESYLKDLKKVLICSTLLEGQYGHSDI----FGGTPVVLGAN 284
Query: 302 GVEEVLGL 309
           GVE+V+ L
Sbjct: 285 GVEQVIEL 292

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 113/265 (42%), Gaps = 26/265 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA--DVGHINTRSEVA 82
           +V   K+AV+GA G +G  LA       +   + L DIA     A   D+ H ++     
Sbjct: 4   TVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTV 62
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
              G+D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  
Sbjct: 63  SIDGSDD-PEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
           +I+NPV+    IA  V +K     E ++FG  T LD  R +                   
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177
Query: 202 XXHAGITILPLFSQAT------------PKANLADEDIK-ALTKRTQDGGTEVVEAKAGK 248
             H G + +PL+  AT            P  +  D D +  + +  ++   +++    GK
Sbjct: 178 GEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---GK 233
Query: 249 GSATLSMAYAGAIFADACLKGLNGV 273
           G+   ++  +G    +A L   N +
Sbjct: 234 GATNYAIGMSGVDIIEAVLHDTNRI 258

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 132/307 (42%), Gaps = 41/307 (13%)
Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRS----E 80
           P  K+ ++G+ G IG  +A L+    L   + ++D+  N P G A D  H N  +    +
Sbjct: 2   PKPKIVLVGS-GMIGGVMATLIVQKNL-GDVVMFDVVKNMPQGKALDTSHSNVMAYSNCK 59
Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKY 135
           V G    D L  A    DVVI+ AG  + PG +     RDDL  +N  I+ ++   I   
Sbjct: 60  VTGSNSYDDLKGA----DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNL 115
Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXX 195
           CPNA + +++NPV+  V +   +F+ +G    K +     LD  R K +           
Sbjct: 116 CPNAFIIVVTNPVDVMVQL---LFEHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRD 172
Query: 196 XXXXXXXXHAGITIL----------PLFSQATPKANLADEDIKALTKRTQDGGTEVVEAK 245
                   H    +L          PL  +      + DE+++ +  RT +   E+V   
Sbjct: 173 VNALIVGAHGNKMVLLKRYITVGGIPL-QEFINNKKITDEEVEGIFDRTVNTALEIVNLL 231
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGV---PDVVECSFVQSTVTELPFFASKVRLGKNG 302
           A   S  ++ A A    A++ LK +  V     ++E  +  S +    F  + + +G  G
Sbjct: 232 A---SPYVAPAAAIIEMAESYLKDIKKVLVCSTLLEGQYGHSNI----FGGTPLVIGGTG 284
Query: 303 VEEVLGL 309
           VE+V+ L
Sbjct: 285 VEQVIEL 291

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/330 (23%), Positives = 134/330 (40%), Gaps = 33/330 (10%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EHVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G     +      +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSG-----KDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           +  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 HCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHALSCH 185
Query: 198 XXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                 H             AG+++  L  +    A+   E  K + K+  D   EV++ 
Sbjct: 186 GWILGEHGDSSVPVWSGMNVAGVSLKTLHPELGTDAD--KEQWKQVHKQVVDSAYEVIKL 243
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
              KG  T ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ 
Sbjct: 244 ---KGYTTWAIGLSVADLAESIMKNLRRVHPISTMLKGLYGIKEDVFLSVPCVLGQNGIS 300
Query: 305 EVLGLGPLSDFEQEGLEKLNPTFHIRKLFQ 334
           +V+ +   S+ E    +  +  + I+K  Q
Sbjct: 301 DVVKVTLTSEEEAHLKKSADTLWGIQKELQ 330

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMCE 144

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 126 IIVVTNPLDCMVKVMCE 142

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 35/331 (10%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   +AL D+      G   D+ H    + T
Sbjct: 16  EHVPHNKITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQHGSLFLRT 74
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +V+I AG  ++ G +R +L   N  I K +   I KY P
Sbjct: 75  PKIVSGKDYN-----VTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSP 129
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 130 NCKLLVVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 186
Query: 198 XXXXXXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEA 244
                 H             AG+++  L  +    A+   E  KA+ K   D   EV++ 
Sbjct: 187 GWILGEHGDSSVPVWSGVNVAGVSLKNLHPELGTDAD--KEHWKAVHKEVVDSAYEVIKL 244
Query: 245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
              KG  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ 
Sbjct: 245 ---KGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENVFLSVPCILGQNGIS 301
Query: 305 EVLGLGPLSDFEQEGLEKLNPT-FHIRKLFQ 334
           +V+ +  L+  E+  L+K   T + I+K  Q
Sbjct: 302 DVVKV-TLTPEEEAHLKKSADTLWGIQKELQ 331

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV-AGYM 85
           +KVA++G+ G IG  +  L  L  L + + LYD+      G A D+ H+ +  +      
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67
Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127
Query: 141 VNMISNPVNSTVPIAAE 157
           + +++NP++  V +  E
Sbjct: 128 IIVVTNPLDCMVKVMXE 144

>pdb|1V6A|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Cyprinus Carpio Length = 332

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 120/299 (40%), Gaps = 28/299 (9%)
Query: 50  LNPLVSRLALYDIANTP--GVAADVGH----INTRSEVAGYMGNDQLGQALEDSDVVIIP 103
           L  L   LAL D+      G A D+ H    + T   VA     D+      +S VV++ 
Sbjct: 41  LKDLTDELALVDVMEDKLKGEAMDLQHGSLFLKTHKIVA-----DKDYSVTANSKVVVVT 95
Query: 104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG 163
           AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K +G
Sbjct: 96  AGARQQEGESRLNLVQRNVNIFKFIIPNIIKYSPNCILLVVSNPVDILTYVA---WKLSG 152
Query: 164 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH--------AGITILPLFSQ 215
               + +   T LD  R +                     H        +G+ +  +F Q
Sbjct: 153 LPRNRVIGSGTNLDSARFRHLMGEKLGIHPSNCHGWVIGEHGDSSVPVWSGVNVAGVFLQ 212
Query: 216 ATPKANLAD---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNG 272
                   D   ED K++ K   D   EV++    KG  + ++  + A    + LK L  
Sbjct: 213 GLNPDMGTDKDKEDWKSVHKMVVDSAYEVIKL---KGYTSWAIGMSAADLCQSILKNLRK 269
Query: 273 VPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK 331
              V         V E  F +    LG +G+ +V+ +   SD E++ ++     + ++K
Sbjct: 270 CHPVSTLVKGMHGVNEEVFLSVPCILGNSGLTDVVHMTLKSDEEKQLVKSAETLWGVQK 328

>pdb|2V65|A Chain A, Apo Ldh From The Psychrophile C. Gunnari Length = 331

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 129/302 (42%), Gaps = 34/302 (11%)
Query: 45  ALLMKLNPLVSRLALYDIANTP--GVAADVGH--INTRSEVAGYMGNDQLGQALEDSDVV 100
           A+ + L  L   LA+ D+      G   D+ H  +  ++++ G    D+      +S VV
Sbjct: 36  AISILLKDLCDELAMVDVMEDKLKGEVMDLQHGSLFLKTKIVG----DKDYSVTANSKVV 91
Query: 101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
           ++ AG  ++ G +R +L   N  I K +   I KY PN I+ ++SNPV+    +A   +K
Sbjct: 92  VVTAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVA---WK 148
Query: 161 KAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXH-------------AGI 207
            +G    + +   T LD  R +                     H             AG+
Sbjct: 149 LSGFPRHRVIGSGTNLDSARFRHLIGEKLHLHPSSCHAWIVGEHGDSSVPVWSGVNVAGV 208
Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           ++  L  Q   + +   E+ KA+ K   DG  EV++    KG  + ++  + A   ++ +
Sbjct: 209 SLQGLNPQMGTEGD--GENWKAIHKEVVDGAYEVIKL---KGYTSWAIGMSVADLVESII 263
Query: 268 KGLNGVPDVVECSFVQST--VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP 325
           K ++ V  V   + VQ    V +  F +    LG +G+ +V+ +  L   E++ L+K   
Sbjct: 264 KNMHKVHPV--STLVQGMHGVKDEVFLSVPCVLGNSGLTDVIHM-TLKAEEEKQLQKSAE 320
Query: 326 TF 327
           T 
Sbjct: 321 TL 322

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 25/326 (7%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV 81
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   + 
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   +
Sbjct: 74  PKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKL 132
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNPV+    +A   +K +G    + +     LD  R +                   
Sbjct: 133 LIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189
Query: 202 XXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
             H             AG+++  L  Q    A+   E  K + K+  D   EV++    K
Sbjct: 190 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL---K 244
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ +V+ 
Sbjct: 245 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 304
Query: 309 LGPLSDFEQEGLEKLNPTFHIRKLFQ 334
           +    D E    +  +  + I+K  Q
Sbjct: 305 VTLTPDEEARLKKSADTLWGIQKELQ 330

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 130/326 (39%), Gaps = 25/326 (7%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEV 81
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H +   + 
Sbjct: 16  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 74
Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
              + +        +S +VII AG  ++ G +R +L   N  I K +   + KY P   +
Sbjct: 75  PKIVSSKDYS-VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKL 133
Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXX 201
            ++SNPV+    +A   +K +G    + +     LD  R +                   
Sbjct: 134 LIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 190
Query: 202 XXH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGK 248
             H             AG+++  L  Q    A+   E  K + K+  D   EV++    K
Sbjct: 191 GEHGDSSVPVWSGVNVAGVSLKSLNPQLGTDAD--KEQWKDVHKQVVDSAYEVIKL---K 245
Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLG 308
           G  + ++  + A  A++ +K L  V  +         + E  F +    LG+NG+ +V+ 
Sbjct: 246 GYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVK 305
Query: 309 LGPLSDFEQEGLEKLNPTFHIRKLFQ 334
           +    D E    +  +  + I+K  Q
Sbjct: 306 VTLTPDEEARLKKSADTLWGIQKELQ 331

>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms Resolution Length = 334

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVA 82
           ++PD K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   +  
Sbjct: 18  TIPDNKITVVGV-GQVGMACAISILGKSLTDELALVDVLEDKLKGEMMDLQHGSLFLQTP 76
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             + N        +S +V++ AGV ++ G +R +L   N  + K +   I KY PN I+ 
Sbjct: 77  KIVANKDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPNCIII 135
Query: 143 MISNPVNSTVPIAAEV 158
           ++SNPV+    +A ++
Sbjct: 136 VVSNPVDILTYVAWKL 151

>pdb|3D0O|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Staphylococcus Aureus Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 37/307 (12%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+  +  D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTK--------------RTQDGGTEVVEAKAGKGSATL 253
           T LP++S     AN+A + +K L +              +T+D   ++++A   KG+   
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGATYY 234
Query: 254 SMAYAGAIFADACLKGLNGVPDV---VECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            +A   A   +A  +  + V  V   +E  + +  V    +      + +NG+  V+ + 
Sbjct: 235 GVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDV----YIGVPAVINRNGIRNVVEI- 289
Query: 311 PLSDFEQ 317
           PL+D EQ
Sbjct: 290 PLNDEEQ 296

>pdb|3H3J|A Chain A, Crystal Structure Of Lactate Dehydrogenase Mutant (A85r) Fro Staphylococcus Aureus Complexed With Nad And Pyruvate Length = 317

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 73/307 (23%), Positives = 131/307 (42%), Gaps = 37/307 (12%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV ++G  G +G   A  +    +V  L + D+ +T  V  DV  +   +  +      +
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDL-DTEKVRGDVMDLKHATPYSPTTVRVK 65
Query: 90  LGQALE--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
            G+  +  D+D+V+I AG  +KPG TR DL + N  I K +   +     + I  + +NP
Sbjct: 66  AGEYSDCHDADLVVICAGARQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNP 125
Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGI 207
           V+    +A   +K +G   E+ +   T LD  R +                     H G 
Sbjct: 126 VDI---LAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQIIGEH-GD 181
Query: 208 TILPLFSQATPKANLADEDIKALTK--------------RTQDGGTEVVEAKAGKGSATL 253
           T LP++S     AN+A + +K L +              +T+D   ++++A   KG+   
Sbjct: 182 TELPVWSH----ANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQA---KGATYY 234
Query: 254 SMAYAGAIFADACLKGLNGVPDV---VECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            +A   A   +A  +  + V  V   +E  + +  V    +      + +NG+  V+ + 
Sbjct: 235 GVAMGLARITEAIFRNEDAVLTVSALLEGEYEEEDV----YIGVPAVINRNGIRNVVEI- 289
Query: 311 PLSDFEQ 317
           PL+D EQ
Sbjct: 290 PLNDEEQ 296

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++  L L +I     + A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQA--MKALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++  L L +I     + A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQA--MKALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 75/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++  L L +I     + A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQA--MKALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG IG  L        +L K  P++ +L    + +     A  G +    +  
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL----LGSERSFQALEGVVMELEDCA 61
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              +AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+   
Sbjct: 62  FPLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
             + V ++ NP N+   IA   +K A   N +    +T LD  RAK
Sbjct: 122 KDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAK 164

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 134/329 (40%), Gaps = 31/329 (9%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 NCKLLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 185
Query: 198 XXXXXXHAGITILPLF--------SQATPKANLA----DEDIKALTKRTQDGGTEVVEAK 245
                 H G + +P++        S  T   +L      E  K + K+  +   EV++  
Sbjct: 186 GWVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL- 243
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             KG  + ++  + A  A++ +K L  V  V         + +  F +    LG+NG+ +
Sbjct: 244 --KGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISD 301
Query: 306 VLGLGPLSDFEQEGLEKLNPTFHIRKLFQ 334
           ++ +   S+ E    +  +  + I+K  Q
Sbjct: 302 LVKVTLTSEEEARLKKSADTLWGIQKELQ 330

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 134/329 (40%), Gaps = 31/329 (9%)
Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           E  P  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQTPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLRT 73
Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V+G   N        +S +VII AG  ++ G +R +L   N  I K +   + KY P
Sbjct: 74  PKIVSGKDYN-----VTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSP 128
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXX 197
           N  + ++SNPV+    +A   +K +G    + +     LD  R +               
Sbjct: 129 NCKLLIVSNPVDILTYVA---WKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCH 185
Query: 198 XXXXXXHAGITILPLF--------SQATPKANLA----DEDIKALTKRTQDGGTEVVEAK 245
                 H G + +P++        S  T   +L      E  K + K+  +   EV++  
Sbjct: 186 GWVLGEH-GDSSVPVWSGMNVAGVSLKTLHPDLGTDKDKEQWKEVHKQVVESAYEVIKL- 243
Query: 246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
             KG  + ++  + A  A++ +K L  V  V         + +  F +    LG+NG+ +
Sbjct: 244 --KGYTSWAIGLSVADLAESIMKNLRRVHPVSTMIKGLYGIKDDVFLSVPCILGQNGISD 301
Query: 306 VLGLGPLSDFEQEGLEKLNPTFHIRKLFQ 334
           ++ +   S+ E    +  +  + I+K  Q
Sbjct: 302 LVKVTLTSEEEARLKKSADTLWGIQKELQ 330

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 40/65 (61%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ + SNPV+    
Sbjct: 65  LADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTD 124
Query: 154 IAAEV 158
           +A ++
Sbjct: 125 LATQL 129

>pdb|1T2F|A Chain A, Human B Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1I0Z|A Chain A, Human Heart L-Lactate Dehydrogenase H Chain, Ternary Complex With Nadh And Oxamate Length = 333

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INTR 78
           +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H    + T 
Sbjct: 17  TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTP 75
Query: 79  SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
             VA     D+      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+
Sbjct: 76  KIVA-----DKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD 130
Query: 139 AIVNMISNPVN 149
            I+ ++SNPV+
Sbjct: 131 CIIIVVSNPVD 141

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 22/234 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFAD 264
           A             K   A +D++ +    +D   +++E    KG+    +A   A    
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGATYYGIAMGLARVTR 246
Query: 265 ACLKGLNGVPDVVECSFVQSTVTELP-FFASKVRLGKNGVEEVLGLGPLSDFEQ 317
           A L   N +  V   +++     E   +      + +NG+ EV+ +  L+D E+
Sbjct: 247 AILHNENAILTV--SAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEK 297

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 98/234 (41%), Gaps = 22/234 (9%)
Query: 96  DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA 155
           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +NPV+    + 
Sbjct: 74  DADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILT 130
Query: 156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQ 215
              +K +G  +E+ +   T LD  R +                     H G T LP++SQ
Sbjct: 131 YATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQ 189
Query: 216 A-----------TPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFAD 264
           A             K   A +D++ +    +D   +++E    KG+    +A   A    
Sbjct: 190 AYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEK---KGATYYGIAMGLARVTR 246
Query: 265 ACLKGLNGVPDVVECSFVQSTVTELP-FFASKVRLGKNGVEEVLGLGPLSDFEQ 317
           A L   N +  V   +++     E   +      + +NG+ EV+ +  L+D E+
Sbjct: 247 AILHNENAILTV--SAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEK 297

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 26/332 (7%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 7   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 65
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 66  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 120
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 121 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 177
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 178 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 237
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
           EV++    KG  + ++  + A  A+  +K L  V  V         + +  F +    L 
Sbjct: 238 EVIKL---KGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN 294
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK 331
            +G+  ++ +    + EQ+  +     + I+K
Sbjct: 295 DHGISNIVKMKLKPNEEQQLQKSATTLWDIQK 326

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 71/332 (21%), Positives = 129/332 (38%), Gaps = 26/332 (7%)
Query: 14  KPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAAD 71
           K  G    S E     K+ V+G  G +G   A+ + +  L   +AL D+      G   D
Sbjct: 6   KLIGHLATSQEPRSYNKITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMD 64
Query: 72  VGH----INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKD 127
           + H    ++T   V+G   +   G     S +V+I AG  ++ G +R +L   N  I K 
Sbjct: 65  LQHGSLFLHTAKIVSGKDYSVSAG-----SKLVVITAGARQQEGESRLNLVQRNVNIFKF 119
Query: 128 LCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXX 187
           +   I K+ P+ I+ ++SNPV+    +A   +K +G    + +     LD  R +     
Sbjct: 120 IIPNIVKHSPDCIILVVSNPVDVLTYVA---WKLSGLPMHRIIGSGCNLDSARFRYLMGE 176
Query: 188 XXXXXXXXXXXXXXXXH--------AGITILPLFSQATPKANLADEDIKALTKRTQDGGT 239
                           H        +G+ +  +        N   +D K L K   D   
Sbjct: 177 RLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAY 236
Query: 240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
           EV++    KG  + ++  + A  A+  +K L  V  V         + +  F +    L 
Sbjct: 237 EVIKL---KGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKDNVFLSLPCVLN 293
Query: 300 KNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK 331
            +G+  ++ +    + EQ+  +     + I+K
Sbjct: 294 DHGISNIVKMKLKPNEEQQLQKSATTLWDIQK 325

>pdb|4MDH|A Chain A, Refined Crystal Structure Of Cytoplasmic Malate Dehydrogenase At 2.5-Angstroms Resolution Length = 334

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 6   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 61
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 62  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 121
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 122 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 164

>pdb|5MDH|A Chain A, Crystal Structure Of Ternary Complex Of Porcine Cytoplasmic Malate Dehydrogenase Alpha-Ketomalonate And Tnad At 2.4 Angstroms Resolution Length = 333

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 76/166 (45%), Gaps = 20/166 (12%)
Query: 30  KVAVLGAAGGIGQPL-------ALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA 82
           +V V GAAG I   L       ++  K  P++  L L DI  TP +    G +    + A
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDI--TPMMGVLDGVLMELQDCA 60
Query: 83  -----GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
                  +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY  
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120
Query: 138 NAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
            ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAK 163

>pdb|1EZ4|A Chain A, Crystal Structure Of Non-Allosteric L-Lactate Dehydrogenase From Lactobacillus Pentosus At 2.3 Angstrom Resolution Length = 318

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
           S+P+ +  VL   G +G   A  M    +     + D+    T G A D+      +   
Sbjct: 1   SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPK 60
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
                +      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 61  KIYSGEY--SDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
           + +NPV+    +    +K +G   E+ +   T+LD  R +
Sbjct: 119 VAANPVDI---LTYATWKFSGFPKERVIGSGTSLDSSRLR 155

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 74/168 (44%), Gaps = 19/168 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANTPGVAADVGHINTRSEVAGY 84
           KVAV GAAG IG  L  L+    L+       L L DI   P + A  G +    E   +
Sbjct: 26  KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDI--EPALKALAG-VEAELEDCAF 82
Query: 85  MGNDQL------GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CP 137
              D++        A +   + I+    PRK GM R DL  +NA I K+   AIA     
Sbjct: 83  PLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAAS 142
Query: 138 NAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGVTTLDVVRAKTF 184
           +  V ++ NP N+   I   + K A G  N + +  +T LD  RA + 
Sbjct: 143 DCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRLDHNRALSL 187

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|3D5T|A Chain A, Crystal Structure Of Malate Dehydrogenase From Burkholderia Pseudomallei Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 77/176 (43%), Gaps = 22/176 (12%)
Query: 20  GYSSESVPDRKVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADV 72
           G  S + P ++VAV GAAG I   L        LL K  P++  L L D+   P   A V
Sbjct: 1   GPGSMAKPAKRVAVTGAAGQIAYSLLFRIANGDLLGKDQPVI--LQLLDL---PQAQAAV 55
Query: 73  GHINTRSE------VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVK 126
             +    +      +AG +  D    A +D+DV ++    PR  GM R DL + NA I  
Sbjct: 56  KGVVMELDDCAFPLLAGVVITDDPKVAFKDADVALLVGARPRSKGMERKDLLSANAEIFT 115
Query: 127 DLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
              +A+ +     + V ++ NP N+   IA    K A    +K    +  LD  RA
Sbjct: 116 VQGAALNEVASRDVKVLVVGNPANTNAYIA---MKSAPDLPKKNFTAMLRLDHNRA 168

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
            KVA++GA G +G   A  +    +   L + D+ N      DV  +N     A      
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHGKAFAPQPVKT 63
Query: 89  QLG--QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
             G  +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I  + +N
Sbjct: 64  SYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123
Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAG 206
           PV+    +    +K +G   E+ +   TTLD  R +                     H G
Sbjct: 124 PVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH-G 179
Query: 207 ITILPLFSQAT----PKANLAD-------EDIKALTKRTQDGGTEVVEAKAGKGSATLSM 255
            T LP++S A     P + L +       E++  +    ++    ++E    KG+    +
Sbjct: 180 DTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEK---KGATYYGV 236
Query: 256 AYAGAIFADACLKGLNGV 273
           A + A    A L   N +
Sbjct: 237 AMSLARITKAILHNENSI 254

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  +D++  ++    PR PGM R DL +IN  I  +   A+ A   PN  V ++ NP N+
Sbjct: 114 EIFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNT 173
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 174 NALIC---LKNAPNIPPKNFHALTRLDENRAK 202

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 21/241 (8%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PL--FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
                  PL  F++A  +A L+ ED   + +  +     ++E   GKG+    +    A 
Sbjct: 182 SAQVGGVPLLEFAEARGRA-LSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLAR 237
Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
              A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L 
Sbjct: 238 LVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALR 295
Query: 322 K 322
           +
Sbjct: 296 R 296

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 94/240 (39%), Gaps = 19/240 (7%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PLFSQATPK-ANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIF 262
                  PL   A  + A L+ ED   + +  +     ++E   GKG+    +    A  
Sbjct: 182 SAQVGGVPLLEFAEARGAALSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLARL 238
Query: 263 ADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L +
Sbjct: 239 VRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALRR 296

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 21/241 (8%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITIL--- 210
           +A   ++ +G    + +   T LD  R +                     H    +L   
Sbjct: 125 VA---YRLSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLGEHGDSEVLVWS 181
Query: 211 -------PL--FSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
                  PL  F++A  +A L+ ED   + +  +     ++E   GKG+    +    A 
Sbjct: 182 SAQVGGVPLLEFAEARGRA-LSPEDRARIDEGVRRAAYRIIE---GKGATYYGIGAGLAR 237
Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
              A L    GV  V   +     V E+     ++ LG  GVE  +    LS  E+E L 
Sbjct: 238 LVRAILTDEKGVYTVSAFTPEVEGVLEVSLSLPRI-LGAGGVEGTV-YPSLSPEEREALR 295
Query: 322 K 322
           +
Sbjct: 296 R 296

>pdb|1B8P|A Chain A, Malate Dehydrogenase From Aquaspirillum Arcticum Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 70/165 (42%), Gaps = 18/165 (10%)
Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVAADVGHINTRSE-- 80
           +VAV GAAG I   L        +L K  P++  L L +I N     A  G +    +  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64
Query: 81  ---VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYC 136
              +AG   +     A +D+DV ++    PR PGM R DL   NA I      AI A   
Sbjct: 65  FPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVAS 124
Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA 181
            N  V ++ NP N+   IA    K A +   K    +  LD  RA
Sbjct: 125 RNIKVLVVGNPANTNAYIA---MKSAPSLPAKNFTAMLRLDHNRA 166

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 126/313 (40%), Gaps = 37/313 (11%)
Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGH----INTRSEVA 82
           K+ V+G  G +G   A+ + L  L   LAL D A+T    G A D+ H    ++T   V 
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVD-ADTDKLRGEALDLQHGSLFLSTPKIVF 78
Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N        +S +VII AG     G TR DL   N  I+K +   + +  P+  + 
Sbjct: 79  GKDYN-----VSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKII 133
Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXX 202
           +++NPV+    +   V+K +G    + +     LD  R +                    
Sbjct: 134 VVTNPVDILTYV---VWKISGFPVGRVIGSGCNLDSARFRYLIGEKLGVNPTSCHGWVLG 190
Query: 203 XH-------------AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
            H             AG+T+  L        N   +  K + K+  +GG EV++    KG
Sbjct: 191 EHGDSSVPIWSGVNVAGVTLKSLNPAIGTDKN--KQHWKNVHKQVVEGGYEVLDM---KG 245
Query: 250 SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGL 309
             + ++  +    A + LK L  V  V         + E  F +    LG++G+ + + +
Sbjct: 246 YTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV 305
Query: 310 GPLSDFEQEGLEK 322
              +  E+EGL K
Sbjct: 306 NMTA--EEEGLLK 316

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 94  LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP 153
           LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 154 IA 155
           +A
Sbjct: 125 VA 126

>pdb|7MDH|A Chain A, Structural Basis For Light Acitvation Of A Chloroplast Enzyme. The Structure Of Sorghum Nadp-Malate Dehydrogenase In Its Oxidized Form Length = 375

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 92  QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAI-AKYCPNAIVNMISNPVNS 150
           +  ED D  ++    PR PGM R  L +IN  I  D   A+ A    N  V ++ NP N+
Sbjct: 104 EVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNT 163
Query: 151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK 182
              I     K A     K    +T LD  RAK
Sbjct: 164 NALIC---LKNAPDIPAKNFHALTRLDENRAK 192

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-175
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-173
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-165
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	4e-61
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	6e-51
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-50
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	6e-50
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	1e-49
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	3e-49
3tl2_A	315	Malate dehydrogenase; center for structural genomi	4e-49
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	5e-49
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	7e-49
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	1e-48
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	5e-48
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	1e-47
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	2e-47
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	8e-47
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	9e-47
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	1e-46
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-46
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	2e-46
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	2e-46
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	4e-46
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	5e-46
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	8e-46
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	9e-46
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	1e-45
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	8e-44
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	1e-43
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	5e-42
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	3e-41
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	8e-41
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	1e-40
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	1e-39
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	7e-39
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	4e-38
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	5e-09
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	8e-07
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  488 bits (1259), Expect = e-175
 Identities = 203/301 (67%), Positives = 238/301 (79%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           +    P  KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+ N PGV AD+ H++T + V
Sbjct: 2   AKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVV 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            G++G  QL  AL   D++I+PAGVPRKPGMTRDDLF INAGIVK LC  IAK CP AIV
Sbjct: 62  RGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIV 121

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           N+ISNPVNSTVPIAAEVFKKAGTY+ K+L GVT LDVVRA TF A    ++  +V+VPVV
Sbjct: 122 NLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 181

Query: 202 GGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI 261
           GGHAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVEAKAG GSATLSMAYA   
Sbjct: 182 GGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK 241

Query: 262 FADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE 321
           FADACL+GL G   V+EC+FV S VTELPFFASKVRLG+NG+EEV  LGPL+++E+ GLE
Sbjct: 242 FADACLRGLRGDAGVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLE 301

Query: 322 K 322
           K
Sbjct: 302 K 302

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  483 bits (1246), Expect = e-173
 Identities = 178/293 (60%), Positives = 226/293 (77%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITI 209
           ST+PI AEVFKK G YN  K+FGVTTLD+VRA  F A    ++ A V+VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 210 LPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKG 269
           +PL SQ TPK +   + +  LT R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDA 241

Query: 270 LNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           +NG   VVECSFV+S  T+ P+F++ + LGK G+E+ LG+G +S FE++ + +
Sbjct: 242 MNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAE 294

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  463 bits (1194), Expect = e-165
 Identities = 166/295 (56%), Positives = 205/295 (69%), Gaps = 4/295 (1%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           +    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGI 207
           VN+TV IAAEV KKAG Y++ KLFGVTTLD++R+ TF A        EV VPV+GGH+G+
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 208 TILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL 267
           TILPL SQ  P  +  ++++  LTKR Q+ GTEVVEAKAG GSATLSM  A A F  + +
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLV 239

Query: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           + L G   VVEC++V+       FF+  + LGKNGVEE   +G LS FEQ  LE 
Sbjct: 240 RALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEG 294

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  198 bits (506), Expect = 4e-61
 Identities = 76/308 (24%), Positives = 121/308 (39%), Gaps = 25/308 (8%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTP-GVAADVGHINTRSEVAGYMG 86
            K+ ++GAAG IG  +A    +  L   L LYD       GVA ++ H     E      
Sbjct: 9   EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRH--CGFEGLNLTF 66

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMIS 145
              + +AL D+  ++   G PRK GMTR+DL   NA I   L   I  YCP+   V +I 
Sbjct: 67  TSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF 126

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEV-NVPVVGGH 204
           NP + T  +       +G     ++  +  LD  R ++  A    +  + V N    GGH
Sbjct: 127 NPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH 182

Query: 205 AGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLS 254
            G  +    S A               L +E    L +R   GG  +++ +    S+  S
Sbjct: 183 -GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR--GRSSFQS 239

Query: 255 MAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSD 314
            +Y       A + G           +V     E    A +  + K+GV+        ++
Sbjct: 240 PSYVSIEMIRAAMGGEAFR--WPAGCYVNVPGFEHIMMAMETTITKDGVKHSDINQLGNE 297

Query: 315 FEQEGLEK 322
            E+  L++
Sbjct: 298 AERAALKE 305

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  171 bits (435), Expect = 6e-51
 Identities = 84/317 (26%), Positives = 134/317 (42%), Gaps = 52/317 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV----AADVGHINTRSEVAGYM 85
           KV+V+GAAG +G      + L  +   +   DI +        AAD  H         Y 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH------GIAYD 55

Query: 86  GNDQLGQA----LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
            N ++ Q        SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I 
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
              SNPV+    +      +AG  + +++ G    LD  R +   + + +  V  V   +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 201 VGGHAGITILPLFSQAT---PKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATL 253
           +G H G   +P+FS+ +        + ++ + L    Q+   +V+E K     G      
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERKGATEWGPARGVA 230

Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
            M    AI  D          L+G  G  D                F   V LG NGVEE
Sbjct: 231 HM--VEAILHDTGEVLPASVKLEGEFGHEDT--------------AFGVPVSLGSNGVEE 274

Query: 306 VLGLGPLSDFEQEGLEK 322
           ++    L D+EQ+ +  
Sbjct: 275 IVEW-DLDDYEQDLMAD 290

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  170 bits (433), Expect = 1e-50
 Identities = 91/318 (28%), Positives = 143/318 (44%), Gaps = 52/318 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           KV V+GA G +G  +A  +    +   + + DI +    G A D+          + V G
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND      EDSDV II AG+PR PGM+RDDL   N  IV  +     +  P++ + +
Sbjct: 61  --TNDY--GPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   V  +A  +   ++ G+   LD  R ++F A + +V+V +V   ++G
Sbjct: 117 VANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMG 172

Query: 203 GHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G T++PL    T    P   L D   I+ + +RT+  G E+V+      SA  +   
Sbjct: 173 GH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM--GTSAWYAPGA 229

Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           A      AI  D        A   G  G+ D+              F    V+LG  GVE
Sbjct: 230 AAAEMTEAILKDNKRILPCAAYCDGEYGLDDL--------------FIGVPVKLGAGGVE 275

Query: 305 EVLGLGPLSDFEQEGLEK 322
           EV+ +  L   E+  L+ 
Sbjct: 276 EVIEV-DLDADEKAQLKT 292

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  168 bits (429), Expect = 6e-50
 Identities = 97/318 (30%), Positives = 153/318 (48%), Gaps = 51/318 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+ V+GA G +G   A  +    L   L L D+      G A D+          ++V G
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
              ND       +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ +
Sbjct: 61  --SNDY--ADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           +SNP++    I   V        ++++ G+   LD  R ++F A +  V++ ++N  V+G
Sbjct: 117 VSNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLG 172

Query: 203 GHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY 257
           GH G  ++P+    T    P ++L   E I  L +RT++GG E+VE    +GSA  + A 
Sbjct: 173 GH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPAS 230

Query: 258 AG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           +      +I  D          L+G  G+                 F    V+LG+NGVE
Sbjct: 231 SVVEMVESIVLDRKRVLPCAVGLEGQYGIDKT--------------FVGVPVKLGRNGVE 276

Query: 305 EVLGLGPLSDFEQEGLEK 322
           ++  +  L   + + L+K
Sbjct: 277 QIYEI-NLDQADLDLLQK 293

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  168 bits (427), Expect = 1e-49
 Identities = 80/322 (24%), Positives = 138/322 (42%), Gaps = 54/322 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGH----INTRSEV 81
           KV ++GA+G +G   ALL+   P +  L L    +      G+  D+        + + +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV 141
                 +   + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I 
Sbjct: 62  YVESDENL--RIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF 119

Query: 142 NMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPV 200
            +I+NPV+    +          +   ++FG+ T LD +R K   A    V++ EV   +
Sbjct: 120 -VITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRI 174

Query: 201 VGGHAGITILPLFSQATPK-------ANLADEDIKALTKRTQDGGTEVVEAKA----GKG 249
           +G H G +++PL S  +             +  I  + +  +  G +++  K     G  
Sbjct: 175 IGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGPA 233

Query: 250 SATLSMAYAGAIFAD--------ACLKGL-NGVPDVVECSFVQSTVTELPFFASKVRLGK 300
           +A L++     I  +        A + G  +G+ DV                   V++G+
Sbjct: 234 AAILNV--VRCIVNNEKRLLTLSAYVDGEFDGIRDV--------------CIGVPVKIGR 277

Query: 301 NGVEEVLGLGPLSDFEQEGLEK 322
           +G+EEV+ +  L   E     K
Sbjct: 278 DGIEEVVSI-ELDKDEIIAFRK 298

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  166 bits (424), Expect = 3e-49
 Identities = 93/324 (28%), Positives = 144/324 (44%), Gaps = 57/324 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           RK+AV+G+ G IG  +A ++  + L + + L+DIA     G A D+ H      + S+V 
Sbjct: 5   RKIAVIGS-GQIGGNIAYIVGKDNL-ADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   +D     +  SDVVII A +P +P   R +L   NA I+  +   + KYCPNA V 
Sbjct: 63  G--TDDY--ADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVI 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    +    F+K       K+ G+   LD  R +TF A    VN ++V+  V+
Sbjct: 119 CITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVI 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G  ++P  S  +           +  +  E I  +   T+    EV +     G+A
Sbjct: 175 GGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
             + A A      A   D        A      GV  +            +P       +
Sbjct: 233 YFAPAAAAVKMAEAYLKDKKAVVPCSAFCSNHYGVKGI---------YMGVP-----TII 278

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEK 322
           GKNGVE++L L  L+  EQ+ L +
Sbjct: 279 GKNGVEDILEL-DLTPLEQKLLGE 301

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  166 bits (423), Expect = 4e-49
 Identities = 97/328 (29%), Positives = 156/328 (47%), Gaps = 54/328 (16%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA----DVGH--- 74
           ++ ++  +KV+V+GA G  G   A L+    L + + L DI            D+     
Sbjct: 2   NAMTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASP 59

Query: 75  -INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                + + G   +D       DSDVV+I AG+ RKPGM+RDDL   N+ I+K +   IA
Sbjct: 60  VQGFDANIIG--TSDY--ADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIA 115

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ PNAI+ +++NPV+           K   + ++++ G    LD  R +TF A + N++
Sbjct: 116 KHSPNAIIVVLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLS 171

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAG 247
           V ++   V+GGH G  ++PL   +     P   L   E ++A+ +RT+ GG E+V    G
Sbjct: 172 VKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLG 229

Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
            GSA  + A +      AI  D        A L+G  G  D+              +   
Sbjct: 230 NGSAYYAPAASLVEMTEAILKDQRRVLPAIAYLEGEYGYSDL--------------YLGV 275

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            V LG NG+E+++ L  L   E+E L++
Sbjct: 276 PVILGGNGIEKIIEL-ELLADEKEALDR 302

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  166 bits (422), Expect = 5e-49
 Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 52/319 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K++++GA G +G   A  +    L   + L DI      G A D+            V 
Sbjct: 3   KKISIIGA-GFVGSTTAHWLAAKEL-GDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVT 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   N+       +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ 
Sbjct: 61  G--TNNY--ADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVII 116

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           M++NP++        +  +   + ++++ G    LD  R +TF A +A V+V +V   ++
Sbjct: 117 MVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLM 172

Query: 202 GGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA 256
           GGH G  ++PL   +     P +   A + +  + +RT+ GG E+V      GSA  + A
Sbjct: 173 GGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSAYYAPA 230

Query: 257 YAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGV 303
            A      A+  D        A L G  G+ D+              +F   V LG  GV
Sbjct: 231 AATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDI--------------YFGVPVILGAGGV 276

Query: 304 EEVLGLGPLSDFEQEGLEK 322
           E++L L PL++ E   L  
Sbjct: 277 EKILEL-PLNEEEMALLNA 294

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  166 bits (423), Expect = 7e-49
 Identities = 101/330 (30%), Positives = 153/330 (46%), Gaps = 57/330 (17%)

Query: 23  SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----IN 76
           +  +  +K++++GA G IG  +ALL+    L   + ++DI      G A D+ H    I 
Sbjct: 9   NTVIMRKKISIIGA-GQIGSTIALLLGQKDL-GDVYMFDIIEGVPQGKALDLNHCMALIG 66

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           + +++ G   N+   + L++SDVVII AGVPRKP MTR DL  +NA IV  +   + KYC
Sbjct: 67  SPAKIFG--ENNY--EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC 122

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
           PNA V  I+NP++         FK+       K+ G+   LD  R +   +    V  ++
Sbjct: 123 PNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSD 178

Query: 196 VNVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAK 245
           V+  VVGGH G  ++PL S  T           +  +    I  + K+T  GG E+VE  
Sbjct: 179 VSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL 237

Query: 246 AGKGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
              GSA  + A +      A   D          L G   V ++              F 
Sbjct: 238 -KTGSAFYAPAASAVAMAQAYLKDSKSVLVCSTYLTGQYNVNNL--------------FV 282

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
              V +GKNG+E+V+ +  LSD E+    K
Sbjct: 283 GVPVVIGKNGIEDVVIV-NLSDDEKSLFSK 311

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  165 bits (420), Expect = 1e-48
 Identities = 68/323 (21%), Positives = 134/323 (41%), Gaps = 58/323 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M    +     + D+    T G A D+           +  
Sbjct: 6   QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED------AQAFTA 58

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  
Sbjct: 59  PKKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFL 118

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + ++++ G  T+LD  R +     + NV+   V+  ++
Sbjct: 119 VAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIM 174

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
           G H G +    +S AT           +  ++D+D+  L    ++   +++  K     G
Sbjct: 175 GEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLKGATFYG 233

Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
            G+A + +  + AI  D        A + G  G+ D+              +  +   +G
Sbjct: 234 IGTALMRI--SKAILRDENAVLPVGAYMDGQYGLNDI--------------YIGTPAIIG 277

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
             G+++++   PLS  E + ++ 
Sbjct: 278 GTGLKQIIES-PLSADELKKMQD 299

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  163 bits (416), Expect = 5e-48
 Identities = 96/324 (29%), Positives = 148/324 (45%), Gaps = 57/324 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+A++G+ G IG  LA L  L  L   + L+DIA     G   D+          ++  
Sbjct: 8   NKIALIGS-GMIGGTLAHLAGLKEL-GDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT 65

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND    A+E +DVVI+ AGVPRKPGM+RDDL  IN  +++ + + I KY P A V 
Sbjct: 66  G--ANDY--AAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVI 121

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++          +K       K+ G+   LD  R + F + + NV+V +V V V+
Sbjct: 122 CITNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVL 177

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G +++PL   +T               + + +  + +RT+DGG E+V      GSA
Sbjct: 178 GGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

Query: 252 TLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
             + A +      +   D        A L G  GV D+              +      +
Sbjct: 236 FYAPAASAIQMAESYLKDKKRVLPVAAQLSGQYGVKDM--------------YVGVPTVI 281

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEK 322
           G NGVE ++ +  L   E+   +K
Sbjct: 282 GANGVERIIEI-DLDKDEKAQFDK 304

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  162 bits (413), Expect = 1e-47
 Identities = 74/325 (22%), Positives = 125/325 (38%), Gaps = 61/325 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KV ++G  G +G   A  +    +V  L + D+      G   D+ H         R +
Sbjct: 7   NKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVK 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I K +   +     + I
Sbjct: 66  AGEY-------SDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGI 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I A    K     ++++ G  T LD  R +   +   +V    V+  
Sbjct: 119 FLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQ 174

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA--- 246
           ++G H G T LP++S A            +       I+ +  +T+D   ++++AK    
Sbjct: 175 IIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATY 233

Query: 247 -GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVR 297
            G       +    AIF +        A L+G     DV              +      
Sbjct: 234 YGVAMGLARI--TEAIFRNEDAVLTVSALLEGEYEEEDV--------------YIGVPAV 277

Query: 298 LGKNGVEEVLGLGPLSDFEQEGLEK 322
           + +NG+  V+ + PL+D EQ     
Sbjct: 278 INRNGIRNVVEI-PLNDEEQSKFAH 301

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  162 bits (412), Expect = 2e-47
 Identities = 79/317 (24%), Positives = 137/317 (43%), Gaps = 53/317 (16%)

Query: 31  VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAGY 84
           + +LGA G +G   A+++ +      L L         G A D+ H    +     ++G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISG- 58

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI 144
             N    + +  SD+V++ AG+ RKPGMTR+ L   NA  + DL   I  Y  +AIV + 
Sbjct: 59  -SNSY--EDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVIT 115

Query: 145 SNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVGG 203
           +NPV+        V  K   +  +++ G    LD  R   + + K  V+   VN  V+G 
Sbjct: 116 TNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGM 171

Query: 204 HAGITILPLFSQAT----PKANLAD-EDIKALTKRTQDGGTEVVEAKAGK-----GSATL 253
           H G  + P+   ++    P  +L   E+I+ +   T + G ++ E +         +  +
Sbjct: 172 H-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLV 230

Query: 254 SMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEE 305
                 AI  D          L+G  G  D+         V E+P       +GK+G+E 
Sbjct: 231 LT--VEAIKRDSKRIYPYSLYLQGEYGYNDI---------VAEVP-----AVIGKSGIER 274

Query: 306 VLGLGPLSDFEQEGLEK 322
           ++ L PL++ E+   ++
Sbjct: 275 IIEL-PLTEDEKRKFDE 290

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  160 bits (408), Expect = 8e-47
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 59/324 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KV ++G  G +G   A  M L  +   + + DI    T G A D+ +         +  
Sbjct: 10  QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN------ALPFTS 62

Query: 87  NDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
             ++        +D+D+V+I AG P+KPG TR DL N N  I+K +   I     N I  
Sbjct: 63  PKKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFL 122

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + +NPV+    I      K   + + ++ G  T+LD  R +   A   NV+   V+  ++
Sbjct: 123 VAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIM 178

Query: 202 GGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
           G H G T  P++S A                + ++ +  + +  +D   E+++ K     
Sbjct: 179 GEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLKGATFY 237

Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
           G  +A   +  + AI  D          + G  G+ D+              +  +   +
Sbjct: 238 GIATALARI--SKAILNDENAVLPLSVYMDGQYGLNDI--------------YIGTPAVI 281

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEK 322
            +NG++ +L + PL+D E+E ++K
Sbjct: 282 NRNGIQNILEI-PLTDHEEESMQK 304

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  160 bits (407), Expect = 9e-47
 Identities = 72/326 (22%), Positives = 119/326 (36%), Gaps = 62/326 (19%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            +V V+GA G +G      +    +   + L D       G A D  H            
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y           D+D+V+I AG  +KPG TR DL + N  I + +  ++       +
Sbjct: 66  HGDY-------DDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGL 118

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K      +++ G  T LD  R +       +V    V+  
Sbjct: 119 FLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAY 174

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++SQA             K   A +D++ +    +D   +++E K   
Sbjct: 175 IIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKKGAT 233

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
             G       +    AI  +        A L GL G  DV              +     
Sbjct: 234 YYGIAMGLARV--TRAILHNENAILTVSAYLDGLYGERDV--------------YIGVPA 277

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEK 322
            + +NG+ EV+ +  L+D E+     
Sbjct: 278 VINRNGIREVIEI-ELNDDEKNRFHH 302

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  160 bits (407), Expect = 1e-46
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 55/326 (16%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH-INTRSEVAGYM 85
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H  +         
Sbjct: 10  KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 67

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAI 140
                  AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 68  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 127

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
           + +++NP++       +V  +A       + G+   LD  R + + A   +V+  +V   
Sbjct: 128 IIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQAT 183

Query: 200 VVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           V+G H G  ++PL    T              + ++ ++ + + T+  G E+V    G+G
Sbjct: 184 VIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-GQG 241

Query: 250 SATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
           SA  + A +      +   D            G  G+ D+              F     
Sbjct: 242 SAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGLKDM--------------FIGLPA 287

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEK 322
            +G  G+E V+ L  L++ E++  +K
Sbjct: 288 VIGGAGIERVIEL-ELNEEEKKQFQK 312

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  160 bits (407), Expect = 1e-46
 Identities = 67/326 (20%), Positives = 117/326 (35%), Gaps = 62/326 (19%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH------INTRSE 80
            KVA++GA G +G   A  +    +   L + D+      G   D+ H         ++ 
Sbjct: 6   NKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS 64

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
              Y       +  +D+D+V I AG  +KPG TR +L   N  I K + S +     + I
Sbjct: 65  YGTY-------EDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGI 117

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVP 199
             + +NPV+    I      K     ++++ G  TTLD  R +   +         V   
Sbjct: 118 FLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAH 173

Query: 200 VVGGHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA-- 246
           ++G H G T LP++S A                   E++  +    ++    ++E K   
Sbjct: 174 IIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKKGAT 232

Query: 247 --GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKV 296
             G   +   +    AI  +          L G  G  DV              +     
Sbjct: 233 YYGVAMSLARI--TKAILHNENSILTVSTYLDGQYGADDV--------------YIGVPA 276

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEK 322
            + + G+  +  L  L++ E+E    
Sbjct: 277 VVNRGGIAGITEL-NLNEKEKEQFLH 301

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  160 bits (406), Expect = 2e-46
 Identities = 103/313 (32%), Positives = 153/313 (48%), Gaps = 34/313 (10%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
           +K+ ++GA G IG  LA L  +  L   + L+DIA     G A D+           +V 
Sbjct: 6   KKITLVGA-GNIGGTLAHLALIKQL-GDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR 63

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G   ND   + LE+SDVVI+ AGVPRKPGM+RDDL  IN  +++ +   I   CPNA V 
Sbjct: 64  G--TNDY--KDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVI 119

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
            I+NP++    I   + +K     + K+ G+   LD  R +TF A + NV+V +V   V+
Sbjct: 120 CITNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVM 175

Query: 202 GGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKAGKGSA 251
           GGH G T++PL   +            +  L  E + A+  RT+ GG E+V      GSA
Sbjct: 176 GGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

Query: 252 TLSMAYAGAIFADACLKGLNGV-PDVVECSFVQSTVTELPFFASKVRLGKNGVEEV-LGL 309
             + A AG   A++ LK    + P   +       + E  F      +  NGV  + +  
Sbjct: 234 YYAPAAAGIQMAESFLKDKKMILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPIEV-- 291

Query: 310 GPLSDFEQEGLEK 322
             +SD E+E L+ 
Sbjct: 292 -EISDKEREQLQV 303

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  159 bits (405), Expect = 2e-46
 Identities = 82/336 (24%), Positives = 135/336 (40%), Gaps = 66/336 (19%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           +  +V   K+AV+GA G +G  LA       +   + L DIA         D+ H     
Sbjct: 1   AETTVKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFY 59

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
            T S              +   D+D+V+I AG  +KPG +R +L      I+K +   + 
Sbjct: 60  PTVSIDGSDDP-------EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLV 112

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K  PNAI  +I+NPV+    IA  V +K     E ++FG  T LD  R +   A +  VN
Sbjct: 113 KVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVN 168

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT-------------PKANLADEDIKALTKRTQDGGT 239
           V  V+  + G H G + +PL+  AT                 L  +  + + +  ++   
Sbjct: 169 VKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAY 227

Query: 240 EVVEAKAGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTV 286
           +++    GKG+      +S      A+  D        + LK  +G+ D+          
Sbjct: 228 KIIN---GKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLKDFHGISDI---------- 274

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                 +    L + GV   +   P+SD E   L++
Sbjct: 275 ----CMSVPTLLNRQGVNNTINT-PVSDKELAALKR 305

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  158 bits (403), Expect = 4e-46
 Identities = 85/330 (25%), Positives = 137/330 (41%), Gaps = 62/330 (18%)

Query: 25  SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA 82
                KVA++GA G +G   A  M L    + L L D+      G A D+ H        
Sbjct: 4   VKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH------GL 56

Query: 83  GYMGNDQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
            +MG   L       ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  +
Sbjct: 57  PFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNH 116

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
            ++ ++SNPV+    I   + +K       K+ G  T LD +R +   + K  V+V  V+
Sbjct: 117 GVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVH 172

Query: 198 VPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAK 245
             ++G H G + LPL+S               PK N  +ED K + +  +  G  +++  
Sbjct: 173 GYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK-- 229

Query: 246 AGKGSAT----LSMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFF 292
             KG+      +S+      +  +          + G+ G+ DV                
Sbjct: 230 -NKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYGIEDV--------------AI 274

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           +    +   GV+EVL    L+  E+E L  
Sbjct: 275 SLPSIVNSEGVQEVLQF-NLTPEEEEALRF 303

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  158 bits (402), Expect = 5e-46
 Identities = 83/323 (25%), Positives = 138/323 (42%), Gaps = 59/323 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+ ++G  G +G   A  + +      + L D+      G A D+ H         +   
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH------GTPFTRR 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NPV+    +    F K    + +K+FG  T LD  R +T  A     +   V+V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 203 GHAGITILPLFSQAT-----------PKANLADEDIKALTKRTQDGGTEVVEAKA----G 247
            H G + +P++S A                   + ++   ++T+    E++E K      
Sbjct: 171 EH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERKGATHYA 229

Query: 248 KGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLG 299
              A   +    +IF D          L+   GV D+                +  V LG
Sbjct: 230 IALAVADI--VESIFFDEKRVLTLSVYLEDYLGVKDL--------------CISVPVTLG 273

Query: 300 KNGVEEVLGLGPLSDFEQEGLEK 322
           K+GVE +L L  L++ E E   K
Sbjct: 274 KHGVERILEL-NLNEEELEAFRK 295

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  157 bits (400), Expect = 8e-46
 Identities = 67/324 (20%), Positives = 118/324 (36%), Gaps = 60/324 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           KV ++G+ G +G   A  + L  +   + L D+        A D+ H         +   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILH------ATPFAHP 54

Query: 88  DQLG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             +       LE +  V++ AGV ++PG TR  L + NA +   +   + +  P A++ +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
            +NPV+    +  +V          ++ G  T LD  R +   A    V    V+  V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 203 GHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKA---- 246
            H G + + ++S A                 L+ ED   + +  +     ++E K     
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGKGATYY 229

Query: 247 GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRL 298
           G G+    +    AI  D        A    + GV +V                +    L
Sbjct: 230 GIGAGLARL--VRAILTDEKGVYTVSAFTPEVAGVLEV--------------SLSLPRIL 273

Query: 299 GKNGVEEVLGLGPLSDFEQEGLEK 322
           G  GV   +    LS  E+  L +
Sbjct: 274 GAGGVAGTVYP-SLSPEERAALRR 296

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  158 bits (401), Expect = 9e-46
 Identities = 86/328 (26%), Positives = 142/328 (43%), Gaps = 62/328 (18%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVA 82
            K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H      +  +V+
Sbjct: 5   AKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS 62

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCP 137
           G   N      L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CP
Sbjct: 63  G--SNTY--DDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP 118

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEV 196
           NA + +++NPV+    +  ++  +     + K+ G+   LD  R K + + K NV   +V
Sbjct: 119 NAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDV 174

Query: 197 NVPVVGGHAGITILPLFSQAT----------PKANLADEDIKALTKRTQDGGTEVVEAKA 246
           N  +VG H G  ++ L    T              ++D +++A+  RT +   E+V   A
Sbjct: 175 NAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLHA 233

Query: 247 ----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
                  +A + M  A +   D          L+G  G  D+             P    
Sbjct: 234 SPYVAPAAAIIEM--AESYLKDLKKVLICSTLLEGQYGHSDI---------FGGTP---- 278

Query: 295 KVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            V LG NGVE+V+ L  L+  E+   ++
Sbjct: 279 -VVLGANGVEQVIEL-QLNSEEKAKFDE 304

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  158 bits (401), Expect = 1e-45
 Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 62/332 (18%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INT 77
           E VP  K+ V+G  G +G   A+ + +  L   LAL D+      G   D+ H    + T
Sbjct: 15  EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKT 73

Query: 78  RSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
              V+   Y           +S +VII AG  ++ G +R +L   N  I K +   + KY
Sbjct: 74  PKIVSSKDY-------SVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKY 126

Query: 136 CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVA 194
            P   + ++SNPV+    I   V  K   + + ++ G    LD  R +     +  V+  
Sbjct: 127 SPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPL 182

Query: 195 EVNVPVVGGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVV 242
             +  V+G H G + +P++S                  +   E  K + K+  D   EV+
Sbjct: 183 SCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVI 241

Query: 243 EAKA----GKGSATLSMAYAGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELP 290
           + K       G +   +  A +I  +          +KGL G+ + V  S        +P
Sbjct: 242 KLKGYTSWAIGLSVADL--AESIMKNLRRVHPISTMIKGLYGIKEDVFLS--------VP 291

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                  LG+NG+ +V+ +  L+  E+  L+K
Sbjct: 292 -----CILGQNGISDVVKV-TLTPDEEARLKK 317

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  153 bits (388), Expect = 8e-44
 Identities = 81/326 (24%), Positives = 125/326 (38%), Gaps = 49/326 (15%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTPGVA-------ADVGHI 75
           +V V GAAG I   L        +  K  P++  L L DI    GV         D    
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMELQDCALP 62

Query: 76  NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY 135
             +  +A     D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY
Sbjct: 63  LLKDVIAT----DKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKY 118

Query: 136 CPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVA 194
              ++ V ++ NP N+    A+   K A +  ++    +T LD  RAK   A K  V   
Sbjct: 119 AKKSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSD 175

Query: 195 EVNVPVVGGHAGITILPLFSQAT----PKANLADEDI-------KALTKRTQDGGTEVVE 243
           +V   ++ G+   T  P  + A      K     E +              Q  G  V++
Sbjct: 176 DVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK 235

Query: 244 AKAGKGSATLSMAYAGAIFADACLKGLNGVP--DVVECSFVQST-----VTELPFFASKV 296
           A+    SA      A     D       G P  + V    + S      V +   ++  V
Sbjct: 236 AR-KLSSA----MSAAKAICDHVRDIWFGTPEGEFVSMG-IISDGNSYGVPDDLLYSFPV 289

Query: 297 RLGKNGVEEVLGLGPLSDFEQEGLEK 322
            +     + V GL P++DF +E ++ 
Sbjct: 290 TIKDKTWKIVEGL-PINDFSREKMDL 314

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  151 bits (384), Expect = 1e-43
 Identities = 87/328 (26%), Positives = 139/328 (42%), Gaps = 54/328 (16%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----INTRSEVAG 83
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H    I+   ++ G
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
             G D     L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +
Sbjct: 61  --GADY--SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILV 116

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVVG 202
           ++NP++    +   +  K       ++FG+   LD  R K         N+      ++G
Sbjct: 117 VTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNI--RRAWIIG 170

Query: 203 GHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKA----GKGSATLSMAYA 258
            H G ++    S A       + D +A+    +    EV++ K     G   A   M   
Sbjct: 171 EH-GDSMFVAKSLADFD---GEVDWEAVENDVRFVAAEVIKRKGATIFGPAVAIYRM--V 224

Query: 259 GAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLG 310
            A+  D          L+G  G+ +V                    +LGKNG  EV  + 
Sbjct: 225 KAVVEDTGEIIPTSMILQGEYGIENV--------------AVGVPAKLGKNGA-EVADI- 268

Query: 311 PLSDFEQEGLEKLNPTFHIRKLFQILQF 338
            LSD E E L        +R+  + L +
Sbjct: 269 KLSDEEIEKLRNSAKI--LRERLEELGY 294

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  148 bits (375), Expect = 5e-42
 Identities = 80/330 (24%), Positives = 114/330 (34%), Gaps = 61/330 (18%)

Query: 30  KVAVLGAAGGIGQPLA-------LLMKLNPLVSRLALYDIANTP------GVA---ADVG 73
           +VAV GAAG I   L        +L K  P++  L L +I N        GV     D  
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEIDDCA 64

Query: 74  HINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
                   A          A +D+DV ++    PR PGM R DL   NA I      AI 
Sbjct: 65  FPLLAGMTAH----ADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAID 120

Query: 134 KYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVN 192
                N  V ++ NP N+   IA    K A +   K    +  LD  RA +  A K    
Sbjct: 121 AVASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKP 177

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANLADED---IKALTKRTQDGGTEVVEAK 245
           V+ +    V G+   T+   +  A        ++ ++D              G  +++A+
Sbjct: 178 VSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR 237

Query: 246 AGKGSATLSMAYAGAIFADACLK-------------GLNGVPDVVECSFVQSTVTELPFF 292
            G  SA  +   A     D  L              G  G+P+ V   F        P  
Sbjct: 238 -GVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEGVIFGF--------P-- 286

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
              V       + V GL  +  F QE +  
Sbjct: 287 ---VTTENGEYKIVQGL-SIDAFSQERINV 312

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  145 bits (368), Expect = 3e-41
 Identities = 65/319 (20%), Positives = 107/319 (33%), Gaps = 55/319 (17%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-NTPGVAADVGHINTRSE 80
           + E+    K+ V+G  G +G    L +    +  RL L D++  T G   D+   N  + 
Sbjct: 8   NHENKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNV 66

Query: 81  VAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN 138
                         A   S VVI           +  D+   N  + + L  A+  Y  +
Sbjct: 67  EISKDL-------SASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQH 118

Query: 139 AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVN 197
           +++ + S P    V I   V  K  T+   ++ G+   LD  R +           +   
Sbjct: 119 SVLLVASQP----VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKE 174

Query: 198 VPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT----L 253
           V V+G   G   +  +S                  +  +   E++     KG  +    L
Sbjct: 175 VWVIGEQ-GEDKVLTWSGQEE------VVSHTSQVQLSNRAMELLR---VKGQRSWSVGL 224

Query: 254 SMAY-AGAIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVE 304
           S+A    +I  +        A  KG   +   V  S        LP       LG NGV 
Sbjct: 225 SVADMVDSIVNNKKKVHSVSALAKGYYDINSEVFLS--------LP-----CILGTNGVS 271

Query: 305 EVLGLGPLSDFE-QEGLEK 322
           EV+    L +    E L+ 
Sbjct: 272 EVIKT-TLKEDTVTEKLQS 289

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  144 bits (366), Expect = 8e-41
 Identities = 79/320 (24%), Positives = 125/320 (39%), Gaps = 58/320 (18%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-----INTRSEVA 82
           KV V+G  G +G   A  + L    S L L D         A D+ H       TR    
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHG 60

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN 142
           G+         L D+ VVI+ AG  +KPG +R DL   NA I ++L   I +  P+A++ 
Sbjct: 61  GH-------SELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLL 113

Query: 143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAEVNVPVV 201
           + SNPV+    +  ++  +        + G  T LD  R +   A  A V+    +  V+
Sbjct: 114 VTSNPVD----LLTDLATQLAPGQ--PVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 202 GGHAGITILPLFSQAT------------PKANLADEDIKALTKRTQDGGTEVVEAKAGKG 249
           G H G + +  +S A                   ++    + + T++    ++E   GK 
Sbjct: 168 GEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKR 223

Query: 250 SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKNG 302
           +    +  A A   +A L+    V  V       S  T        LP       +G+ G
Sbjct: 224 ATYYGIGAALARITEAVLRDRRAVLTV-------SAPTPEYGVSLSLP-----RVVGRQG 271

Query: 303 VEEVLGLGPLSDFEQEGLEK 322
           V   L    L+  EQ+ LE+
Sbjct: 272 VLSTLHP-KLTGDEQQKLEQ 290

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  144 bits (365), Expect = 1e-40
 Identities = 81/330 (24%), Positives = 121/330 (36%), Gaps = 63/330 (19%)

Query: 30  KVAVLGAAGGIGQPLAL------LMKLNPLVSRLALYDIANTPGVAA---------DVGH 74
           +VAV GAAG IG  L        ++  +  V  L L +I     + A         D   
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI-LQLLEI--PQAMKALEGVVMELEDCAF 62

Query: 75  INTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK 134
                  A     D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+
Sbjct: 63  PLLAGLEAT----DDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAE 118

Query: 135 YCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV 193
                + V ++ NP N+   IA    K A   N +    +T LD  RAK   A K    V
Sbjct: 119 VAKKDVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGV 175

Query: 194 AEVNVPVVGGHAGITILPLFSQAT----PKANLADED--IKALTKRTQDGGTEVVEAKAG 247
             +    V G+   T+ P    A     P   L D +   K         G  +++A+ G
Sbjct: 176 DRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G 234

Query: 248 KGSATLSMAYA--------------GAIF-ADACLKGLNGVPDVVECSFVQSTVTELPFF 292
             SA  S A A              G         +G  G+P+ +  SF    VT     
Sbjct: 235 ASSA-ASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIPEGIVYSFP---VT----- 285

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                  K+G   V+    +++F ++ +E 
Sbjct: 286 ------AKDGAYRVVEGLEINEFARKRMEI 309

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  142 bits (359), Expect = 1e-39
 Identities = 65/330 (19%), Positives = 114/330 (34%), Gaps = 57/330 (17%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGH----I 75
           S E     K+ V+G    +G   A+ + +  L   +AL D+      G   D+ H    +
Sbjct: 15  SQEPRSYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFL 73

Query: 76  NTRSEVAG--YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA 133
           +T   V+G  Y            S +V+I AG  ++ G +R +L   N  I K +   I 
Sbjct: 74  HTAKIVSGKDY-------SVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIV 126

Query: 134 KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVN 192
           K+ P+ +  +             +   K       ++ G    LD  R +     +  V+
Sbjct: 127 KHSPDCLKELHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVH 182

Query: 193 VAEVNVPVVGGHAGITILPLFSQAT----PKANL-ADEDIKALTKRTQDGGTEVVEAKAG 247
              V   V+G H G ++  ++S        K  + +  ++  L   T      VV     
Sbjct: 183 SCLVIGWVIGQH-GDSVPSVWSGMWDAKLHKDVVDSAYEVIKLKGYTSWAIGLVVSNPVD 241

Query: 248 KGSATLSMAYAG-----AIFAD--------ACLKGLNGVPDVVECSFVQSTVTELPFFAS 294
             +       +       I  D          +K   G+ D V  S        LP    
Sbjct: 242 VLTYVAWKGCSVADLAQTIMKDLCRVHPVSTMVKDFYGIKDNVFLS--------LP---- 289

Query: 295 KVRLGKNGVEE--VLGLGPLSDFEQEGLEK 322
              L  NG+    ++ +  L   E++ L+K
Sbjct: 290 -CVLN-NGISHCNIVKM-KLKPDEEQQLQK 316

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  139 bits (353), Expect = 7e-39
 Identities = 63/321 (19%), Positives = 116/321 (36%), Gaps = 56/321 (17%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH------INTRSE 80
           RK+ ++G  G +G  +A  +    +       D           D          +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
           +  +        AL D+DVVI   G  +     P   R       + +V+ + + + +  
Sbjct: 61  INDW-------AALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG 113

Query: 137 PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTFYAGKANVNVAE 195
            + ++ +ISNPV+    +   +F+    +   K+ G  T LD  R +       +++   
Sbjct: 114 FHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRS 169

Query: 196 VNVPVVGGHAGITILPLFSQAT----PKANLAD---EDIKALTKRTQDGGTEVVEAKAGK 248
           V+   +G H G +    +S       P   LAD    D+ A+ +  + GG  V+    GK
Sbjct: 170 VSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---GK 225

Query: 249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE-------LPFFASKVRLGKN 301
           G  +  +A +    A A +   +    V       S   +        P       +G++
Sbjct: 226 GYTSYGVATSAIRIAKAVMADAHAELVV-------SNRRDDMGMYLSYP-----AIIGRD 273

Query: 302 GVEEVLGLGPLSDFEQEGLEK 322
           GV     L  L+  EQE L +
Sbjct: 274 GVLAETTL-DLTTDEQEKLLQ 293

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  139 bits (351), Expect = 4e-38
 Identities = 78/330 (23%), Positives = 112/330 (33%), Gaps = 60/330 (18%)

Query: 30  KVAVLGAAGGIGQPLALL------MKLNPLVSRLALYDIANTP----GVA---ADVGHIN 76
            +AV GAAG I   L            +  ++ L L     +     GVA    D  +  
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA-LKLLGSERSFQALEGVAMELEDSLYPL 92

Query: 77  TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            R    G        +  ED D  ++    PR PGM R  L +IN  I  D   A+    
Sbjct: 93  LREVSIG----IDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVA 148

Query: 137 P-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAE 195
             N  V ++ NP N+   I     K A     K    +T LD  RAK   A KA V   +
Sbjct: 149 SKNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDK 205

Query: 196 VNVPVVGGHAGITILPLFSQATPKANLADEDIK-------ALTKRTQDGGTEVVEAKAGK 248
           V+   + G+   T +P F  A        E IK         T   Q  G  +++   G+
Sbjct: 206 VSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GR 264

Query: 249 GSATLSMAYAGAIFADACLKGLN----------------GVPDVVECSFVQSTVTELPFF 292
            SA  S A + A    + +                    G+ + +  S         P  
Sbjct: 265 SSA-ASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAEDIVFSM--------P-- 313

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               R   +G  E+       DF  E ++K
Sbjct: 314 ---CRSKGDGDYELATDVSNDDFLWERIKK 340

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 56.3 bits (135), Expect = 5e-09
 Identities = 42/207 (20%), Positives = 69/207 (33%), Gaps = 30/207 (14%)

Query: 25  SVPDRKVAVLGAAGGIGQPLAL---LMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
           S+   K+A +G  G  G   +L   L     +   +ALYD+      A     I   S  
Sbjct: 2   SLDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLD--FEAAQKNEVIGNHSGN 58

Query: 82  AG--YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNINAG---- 123
               Y     L +AL  +D+VII                P + G+ +     +  G    
Sbjct: 59  GRWRYEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIR 118

Query: 124 ------IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD 177
                 I  ++  AI  Y P + V   +NP++    +  +VF              T   
Sbjct: 119 GLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKL 178

Query: 178 VVRAKTFYAGKANVNVAEVNVPVVGGH 204
           +    T   G       ++ V V+G +
Sbjct: 179 LAEMVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 28/146 (19%), Positives = 46/146 (31%), Gaps = 28/146 (19%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI-ANTPGVAADVGH--INTRSEVA 82
            + + G  G    P   L LL  L    + +L LYD         A      I  ++   
Sbjct: 30  SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 88

Query: 83  GYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +       +A  D D V+    V +      D+   +  G+                  
Sbjct: 89  EFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSI 148

Query: 125 --VKDLCSAIAKYCPNAIVNMISNPV 148
             V ++   + KY P+A +   SNP 
Sbjct: 149 GGVLEILDYMEKYSPDAWMLNYSNPA 174

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 49.4 bits (117), Expect = 8e-07
 Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 28/147 (19%)

Query: 30  KVAVLGAAGGI--GQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTR-SEVAG-- 83
           K+A +G            L+ + + L V  L L DI         VG +  R  E AG  
Sbjct: 9   KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVP 68

Query: 84  --YMGNDQLGQALEDSDVVIIPAGV------------PRKPGMTRDDLFNI--------N 121
                     +AL+ +D V     V            P K G+   +             
Sbjct: 69  IEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRT 128

Query: 122 AGIVKDLCSAIAKYCPNAIVNMISNPV 148
             ++ D+   + + CP+A +   +NP 
Sbjct: 129 IPVILDIIRDMEELCPDAWLINFTNPA 155

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 32/206 (15%), Positives = 52/206 (25%), Gaps = 43/206 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIA--NTPGVAADVGHINTRSEVAG 83
           K+ ++GA G        ++ L K   L  S + L DI       +               
Sbjct: 5   KIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADL 63

Query: 84  -YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGI------------------ 124
            +     L   + D+D VI  A V     + +        G                   
Sbjct: 64  KFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTF 123

Query: 125 --------VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL 176
                     D+   I K  P A     +NP+         +  +       K  G    
Sbjct: 124 SNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTVPI---KAVGFC-- 174

Query: 177 DVVRAKTFYAGKANVNVAEVNVPVVG 202
                      K  +   +V+  V G
Sbjct: 175 HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 56/395 (14%), Positives = 103/395 (26%), Gaps = 140/395 (35%)

Query: 50  LNPLVSRLALYDIANTP-GV--AADVGHI-NTRSEVAG-YM--------GNDQLGQALED 96
            +  V      D+ + P  +    ++ HI  ++  V+G             + + + +E+
Sbjct: 26  EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 97  SD-------------VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                              P+ + R     RD L+N N    K   S +  Y    +   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY--LKLRQA 143

Query: 144 ISN--PVNSTVPIAAEVFKKAGTYNEKKLFGVTTL--DVVRAKTFYAGKAN----VNVAE 195
           +    P  + +     +    G        G T +  DV  +             +N+  
Sbjct: 144 LLELRPAKNVL-----IDGVLG-------SGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191

Query: 196 VNVPVVGGHAGITIL-PLFSQATPKAN--------------------------------- 221
            N P       + +L  L  Q  P                                    
Sbjct: 192 CNSP----ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 222 --LAD----EDIKA--------LTKRTQDGG-TEVVEAKAGK------GSATLSMAYAGA 260
             L +    +   A        LT  T+    T+ + A           S TL+     +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 261 IFADACLKGLNGVPDVVECSFVQSTVTELP------------FFASKVRLGKNGVE--EV 306
           +               ++C        +LP              A  +R G    +  + 
Sbjct: 306 LLLK-----------YLDCR-----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 307 LGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFRK 341
           +    L+   +  L  L P    RK+F  L  F  
Sbjct: 350 VNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPP 383

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	100.0
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	100.0
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.97
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.97
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.86
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.76
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.47
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.46
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.41
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.4
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.4
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.31
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.28
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.26
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.24
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.23
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.21
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.16
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.16
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.14
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.11
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.11
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.03
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.03
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.02
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	97.99
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.99
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.98
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.97
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.97
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.96
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	97.95
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	97.94
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	97.9
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.9
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	97.89
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.87
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.87
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.86
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	97.86
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.86
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.85
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.85
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	97.85
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.85
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.85
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.84
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.83
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	97.82
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	97.81
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.81
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.8
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	97.8
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	97.8
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	97.8
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	97.79
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.79
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	97.78
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	97.78
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.78
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	97.77
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.77
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.75
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.73
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	97.73
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.72
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.7
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	97.7
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.7
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	97.69
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.69
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.68
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.68
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.68
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.68
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.67
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.67
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.66
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	97.65
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.65
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.63
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.63
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	97.6
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.6
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	97.58
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	97.58
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.57
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.57
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	97.57
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.56
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.55
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	97.55
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.54
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.54
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.52
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.5
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.49
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	97.49
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.49
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.47
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	97.46
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	97.45
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	97.45
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	97.45
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.44
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.44
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.43
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	97.43
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.43
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	97.43
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.43
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	97.43
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.42
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.42
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	97.42
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.42
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.41
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.41
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.41
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	97.41
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.4
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	97.4
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.39
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.39
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	97.39
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.37
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	97.36
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.36
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	97.35
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.34
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.33
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.33
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.33
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.32
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	97.32
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	97.32
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	97.31
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.31
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.3
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.3
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.29
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.29
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.28
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.27
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.26
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	97.26
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.25
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.25
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.25
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.24
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	97.24
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	97.24
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.24
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.23
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	97.23
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.23
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.23
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.22
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.22
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.21
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	97.21
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	97.2
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.2
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.19
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.18
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.18
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.18
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.17
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.16
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.15
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.15
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.15
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.15
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.15
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.14
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.14
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.14
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.13
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	97.13
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.13
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.12
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.11
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.11
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.1
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	97.1
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.1
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.1
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.09
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.09
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.08
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.08
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.07
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.06
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.06
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.06
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.06
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.06
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.05
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.04
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.03
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.03
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.03
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.02
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.02
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.0
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.99
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.99
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.99
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.99
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.98
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.98
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.97
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.97
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.97
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	96.96
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.96
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.96
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.95
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	96.95
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.95
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.95
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.95
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.94
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.93
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.93
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.92
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.92
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.92
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	96.91
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	96.9
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	96.9
4f6l_B	508	AUSA reductase domain protein; thioester reductase	96.89
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.89
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.89
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.88
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.88
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.88
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.86
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	96.86
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	96.86
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.86
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.85
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.85
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.84
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	96.84
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.84
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.83
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.83
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	96.83
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.82
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.82
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.81
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.81
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.8
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.8
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.78
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.78
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.78
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.78
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.78
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.77
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.77
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	96.76
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.76
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.75
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.75
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.75
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.75
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.74
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.74
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.73
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.73
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.73
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.73
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.73
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.72
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.72
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.71
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.71
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.71
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.7
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.69
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.69
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.68
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.68
1spx_A	278	Short-chain reductase family member (5L265); paral	96.67
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.67
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.67
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.67
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.67
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.66
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.66
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.66
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	96.65
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.64
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.64
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.63
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.63
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.63
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.63
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.62
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.62
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	96.62
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.61
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	96.61
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.61
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.6
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.6
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.6
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.6
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.59
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	96.59
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	96.59
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.59
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.58
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.58
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.58
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.57
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.57
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.57
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.56
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.56
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.56
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	96.56
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	96.55
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.55
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.54
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.54
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.53
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.53
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.52
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.52
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.51
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	96.51
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.51
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.5
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	96.5
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.49
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.49
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.48
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.47
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.47
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.46
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.46
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.46
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.46
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.46
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.45
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.45
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.45
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.45
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.44
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.43
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.43
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	95.44
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.41
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	96.4
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.38
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.34
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.32
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.3
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.29
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.29
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.28
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	96.27
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	96.25
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.25
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	96.22
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.22
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.21
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.18
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.18
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	96.17
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.16
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.14
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.14
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.12
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.1
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.08
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	96.02
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.01
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.99
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	95.99
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.98
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	95.97
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	95.96
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.95
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.93
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	95.92
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.91
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	95.9
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.86
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	95.85
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.83
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.83
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.82
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	95.76
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	95.75
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	95.74
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.74
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.73
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	95.72
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.72
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	95.66
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	95.66
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	95.66
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.65
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	95.64
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	95.64
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	95.63
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.63
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.62
4e4y_A	244	Short chain dehydrogenase family protein; structur	95.61
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.61
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	95.57
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.56
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.49
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	95.46
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.46
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.46
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	95.43
2duw_A	145	Putative COA-binding protein; ligand binding prote	95.39
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.38
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.38
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	95.35
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	95.31
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.31
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	95.29
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	95.24
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	95.2
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	95.19
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.19
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	95.19
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.17
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	95.17
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.17
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	95.16
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.15
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	95.14
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.14
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	95.13
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.11
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	95.11
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.1
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.1
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.06
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	95.04
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	95.03
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.0
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	94.99
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	94.97
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	94.95
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	94.93
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	94.92
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	94.89
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	94.87
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.87
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.86

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=1.4e-64  Score=485.28  Aligned_cols=301  Identities=55%  Similarity=0.852  Sum_probs=269.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+||||+|.||+++++.|+++ ++..||+|+|+++ ..|+++||+|...+.++..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999997799999999999987 7888999999987 7899999999865555665432 3447899999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHH
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYA  186 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la  186 (358)
                      |+++||+|.|++.+|+++++++++.|.++||+++++++|||+|++|++++++++++|.+|++||+|+|.||++|+++++|
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la  159 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA  159 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999987779999934999999999999999999999


Q ss_pred             HHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHH
Q 018314          187 GKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADAC  266 (358)
Q Consensus       187 ~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ai  266 (358)
                      +++|+++++|+++|||||+++++||+||++ -+.++++++++++.++|+++|++|++.|.|+|+++||+|.|+++++++|
T Consensus       160 ~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~ai  238 (312)
T 3hhp_A          160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSL  238 (312)
T ss_dssp             HHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             HHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHHHH
Confidence            999999999999999999333899999998 4457889999999999999999999976677999999999999999999


Q ss_pred             HccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          267 LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       267 l~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      +...++++.++|+++++|+...++|||+||++|++|+++++++++|+++|+++|++|++.|+++.
T Consensus       239 ~~~l~~~~~v~~~s~~~g~g~~~v~~s~P~~~g~~Gv~~v~~~~~L~~~E~~~l~~s~~~l~~~i  303 (312)
T 3hhp_A          239 VRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKKDI  303 (312)
T ss_dssp             HHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCceEEEEEecCCCCcceEEEeEEEEeCCEEEEEcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            54443445688888888654558999999999999999999987899999999999999999543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=1.1e-62  Score=467.72  Aligned_cols=278  Identities=29%  Similarity=0.425  Sum_probs=250.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |+||+++++.|++++.++||+|||+++  ++|+++||+|+.    ..+++..   ++| +++++|||+||+
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~---~~d-~~~~~~aDvVvi   75 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEec---CCC-HHHhCCCCEEEE
Confidence            79999997 999999999999999999999999987  789999999964    2334443   245 588999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      +||.||+|||+|.|++..|++|++++++.|.++||+++++++|||+|+||+++   ++.+| +|++|+||+ |.||++||
T Consensus        76 tAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~i~---~k~sg-~p~~rvig~gT~LDs~R~  151 (294)
T 2x0j_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSS-CCTTSEEECCHHHHHHHH
T ss_pred             ecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHHhh---HHHcC-CChhhEEEeeeEEeHHHH
Confidence            99999999999999999999999999999999999999999999999999986   78998 999999999 89999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI  261 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~  261 (358)
                      ++++++.+++++.  +++|||+||+ ++||+||++++.+..   +++++.++++++|++|++   +||+++|++|.++++
T Consensus       152 ~~~l~~~~~~~~~--~~~V~G~HGd-t~vp~~S~~~v~g~~---~~~~i~~~~~~~g~eIi~---~kGst~~a~a~a~~~  222 (294)
T 2x0j_A          152 KERLYNAGARNIR--RAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIK---RKGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHHHTTCEEEC--CCCEEBCSST-TCEECGGGCCEESCC---CHHHHHHHHHTHHHHHHH---HHSSCCHHHHHHHHH
T ss_pred             HHHHhhcccCCcc--eeEEEecCCC-cEEEeeeccCCCCch---hHHHHHHHHhhhheEEEe---cCcccchhHHHHHHH
Confidence            9999999887653  7899999998 899999999986533   357788899999999998   568999999999999


Q ss_pred             HHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          262 FADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       262 li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      ++++|+++.+   .++|++ +++|+| .+|+|||+||++|++|++ ++++ +||++|+++|++|++.|++
T Consensus       223 ~~~ail~d~~---~v~~~s~~l~g~yG~~~v~~s~P~~lg~~Gve-i~~l-~L~~~E~~~l~~s~~~lk~  287 (294)
T 2x0j_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRE  287 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC---cEEEEEEEEecCCCCccEEEEEEEEEeCCEEE-EeCC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999864   588886 579998 679999999999999985 8887 9999999999999999983

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=1.4e-61  Score=465.66  Aligned_cols=310  Identities=57%  Similarity=0.923  Sum_probs=277.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+||||+|+||++++..|+..++..||+|+|+++.+++++||.|...+.+++.+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999997799999999999998888899999998878899999998765567765444577778999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHH
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGK  188 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~  188 (358)
                      ++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++++++++.+++|++||||+|.||+.|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999877665555545999999999999999999999999


Q ss_pred             cCCCCCCCceEEEeec-CCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHH
Q 018314          189 ANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACL  267 (358)
Q Consensus       189 l~v~~~~v~~~v~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail  267 (358)
                      +|++|++|+++|||+| |+ +++|+||++++...+++++++++.+++++++++|++.+.|+|+++|++|.++++++++|+
T Consensus       161 l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~ai~  239 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGK-TIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLV  239 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCC-cEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHHH
Confidence            9999999999999999 66 899999999865458888899999999999999999877889999999999999999999


Q ss_pred             ccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHhhhhHHHhcc
Q 018314          268 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQFFR  340 (358)
Q Consensus       268 ~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~~~~~~~~~~  340 (358)
                      +|+++++.++++++++|+|++|+|||+||++|++|+++++++++|+++|+++|++|++.|+.+ ..+.++|.+
T Consensus       240 ~~~~g~~~v~~~~~~~g~y~~~~~~~~P~~ig~~Gv~~i~~l~~l~~~e~~~l~~s~~~l~~~-~~~~~~~~~  311 (314)
T 1mld_A          240 DAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKAS-IKKGEEFVK  311 (314)
T ss_dssp             HHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred             cCcCCCcceEEEEEeCCccCCceEEEEEEEEeCCeeEEecCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence            997655457888888999988999999999999999999888789999999999999999943 334444543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=1.3e-62  Score=474.68  Aligned_cols=288  Identities=26%  Similarity=0.414  Sum_probs=260.0

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CC--ccEEEEecCCccccccCCCCE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TR--SEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~--~~v~~~~~~~d~~~al~~aDi   99 (358)
                      +.+++||+|||| |.||+++++.++..++++||+|+|+++  ++++++||+|+. +.  ..+..   ++|+ ++++|||+
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---~~d~-~~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVS---SKDY-SVTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEE---CSSG-GGGTTEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEE---cCCH-HHhCCCCE
Confidence            346789999998 999999999999999989999999987  689999999985 22  23332   3564 68999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccH
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds  178 (358)
                      ||+++|.|+++||+|.|++.+|++|++++++.|+++||++|++++|||+|++|+++   ++.+| +|++|+||+ |.||+
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvdi~t~~~---~k~sg-~p~~rviG~gt~LD~  166 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVDILTYVA---WKISG-FPKNRVIGSGCNLDS  166 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHH
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH---HHHhC-CCHHHEEeeccccHH
Confidence            99999999999999999999999999999999999999999999999999999886   78887 999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC------------CCCHHHHHHHHHHHhcCcceEEeecc
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA------------NLADEDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~------------~~~~~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      +|+++++|+++|+++++|+++||||||+ ++||+||++++++            .+++++|+++.++++++|++|++.  
T Consensus       167 ~R~~~~la~~lgv~~~~V~~~ViGeHG~-s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~--  243 (331)
T 4aj2_A          167 ARFRYLMGERLGVHPLSCHGWVLGEHGD-SSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKL--  243 (331)
T ss_dssp             HHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHhCCCHHHCEEeEEecCCC-ceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhc--
Confidence            9999999999999999999999999998 8999999998753            134567899999999999999984  


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s  323 (358)
                       ||+++|++|.++++++++|+++.+   .++|++ +++|+|  ++++|||+||++|++|+++++++ +|+++|+++|++|
T Consensus       244 -kg~t~~a~a~a~a~~~~ail~d~~---~~~~vs~~~~g~ygi~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s  318 (331)
T 4aj2_A          244 -KGYTSWAIGLSVADLAESIMKNLR---RVHPISTMIKGLYGIKEDVFLSVPCILGQNGISDVVKV-TLTPDEEARLKKS  318 (331)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTGGGCCSCCEEEEEEEEETTEEEEEECC-CCCHHHHHHHHHH
T ss_pred             -CCCCchhHHHHHHHHHHHHHhCCC---CeEEEEEecCCccCCcCceEEEEEEEEcCCeeEEEccC-CCCHHHHHHHHHH
Confidence             588999999999999999999864   578776 678888  56999999999999999999997 9999999999999


Q ss_pred             HHHHHH
Q 018314          324 NPTFHI  329 (358)
Q Consensus       324 ~~~L~~  329 (358)
                      ++.|+.
T Consensus       319 ~~~l~~  324 (331)
T 4aj2_A          319 ADTLWG  324 (331)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999983

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.9e-62  Score=472.65  Aligned_cols=288  Identities=26%  Similarity=0.419  Sum_probs=245.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ++++||+|||| |.||+++++.|+..++++||+|+|+++  ++++++||+|... ...++.++  ++ +++++|||+||+
T Consensus         7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi   82 (326)
T 3vku_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVI   82 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEE
Confidence            35679999997 999999999999999989999999987  6899999999762 12444443  33 689999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++||+|.|++.+|+++++++++.|.++||++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        83 ~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvdi~t~~~---~k~~g-~p~~rviG~gt~LD~~R~  158 (326)
T 3vku_A           83 TAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARF  158 (326)
T ss_dssp             CCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchHHHHHHH---HHhcC-CCHHHeeeecccCcHHHH
Confidence            99999999999999999999999999999999999999999999999999886   68888 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC----------CHHHHHHHHHHHhcCcceEEeeccCCCC
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~----------~~~~~~~l~~~v~~~~~~i~~~~~gkg~  250 (358)
                      ++++|+++|+++++|+++||||||+ ++||+||++++++ |+          ++++++++.++++++|++|++   +||+
T Consensus       159 ~~~la~~lgv~~~~V~~~ViGeHGd-t~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~kG~  234 (326)
T 3vku_A          159 RQSIAKMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIK---LKGA  234 (326)
T ss_dssp             HHHHHHHHTSCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHH---HHSC
T ss_pred             HHHHHHHhCCCHHHCeEEEEcCCCC-eeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHh---cCCC
Confidence            9999999999999999999999998 8999999999864 22          566789999999999999998   4689


Q ss_pred             ccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH  328 (358)
Q Consensus       251 t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~  328 (358)
                      ++||+|.|+++++++|+++.   +.++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|+
T Consensus       235 t~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~sa~~L~  310 (326)
T 3vku_A          235 TFYGIATALARISKAILNDE---NAVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLK  310 (326)
T ss_dssp             CCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEEEGGGEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcCC---CceEEEEeeccCccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHHHHH
Confidence            99999999999999999975   3688875 688988 46899999999999999999998 999999999999999999


Q ss_pred             H
Q 018314          329 I  329 (358)
Q Consensus       329 ~  329 (358)
                      +
T Consensus       311 ~  311 (326)
T 3vku_A          311 K  311 (326)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=8.2e-62  Score=468.70  Aligned_cols=292  Identities=22%  Similarity=0.320  Sum_probs=262.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      |+++++||+|||| |.||+++++.|+..+++++|+|+|+++  .+++++||+|...  ...++.++  ++ +++++|||+
T Consensus         1 m~~~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~--~~-~~a~~~aDv   76 (326)
T 3pqe_A            1 MNKHVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSY--GT-YEDCKDADI   76 (326)
T ss_dssp             -CCSCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEE--EC-GGGGTTCSE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEe--Cc-HHHhCCCCE
Confidence            4456789999997 999999999999999889999999987  6899999999731  12445443  33 589999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccH
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds  178 (358)
                      ||+++|.|+++|++|.|++..|+++++++++.|.++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+
T Consensus        77 Vvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~  152 (326)
T 3pqe_A           77 VCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYAT---WKFSG-LPKERVIGSGTTLDS  152 (326)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHH
T ss_pred             EEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHEEeeccccHH
Confidence            99999999999999999999999999999999999999999999999999999886   68888 999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----------CCHHHHHHHHHHHhcCcceEEeeccC
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~~~~~g  247 (358)
                      +|+++++|+++|+++++|+++||||||+ ++||+||++++++ |          +++++++++.++++++|++|++   +
T Consensus       153 ~R~~~~la~~lgv~~~~V~~~V~GeHG~-t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~---~  228 (326)
T 3pqe_A          153 ARFRFMLSEYFGAAPQNVCAHIIGEHGD-TELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE---K  228 (326)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHHhCCCHHHceeeeeecCCC-ceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeee---C
Confidence            9999999999999999999999999998 8999999999864 2          2567789999999999999998   4


Q ss_pred             CCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 018314          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP  325 (358)
Q Consensus       248 kg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~  325 (358)
                      ||+++||+|.|+++++++|+++.   +.++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++
T Consensus       229 kG~t~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~v~~s~P~~lg~~Gv~~iv~l-~L~~~E~~~l~~s~~  304 (326)
T 3pqe_A          229 KGATYYGVAMSLARITKAILHNE---NSILTVSTYLDGQYGADDVYIGVPAVVNRGGIAGITEL-NLNEKEKEQFLHSAG  304 (326)
T ss_dssp             HSCCCHHHHHHHHHHHHHHHTTC---CEEECCEEEEESGGGCEEEEEECCEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCC---CcEEEEEEeeccccCCCceEEEEEEEEcCCceEEEecC-CCCHHHHHHHHHHHH
Confidence            68999999999999999999875   3688875 689998 56999999999999999999998 999999999999999


Q ss_pred             HHHHHh
Q 018314          326 TFHIRK  331 (358)
Q Consensus       326 ~L~~~~  331 (358)
                      .|++..
T Consensus       305 ~l~~~~  310 (326)
T 3pqe_A          305 VLKNIL  310 (326)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998443

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=1.9e-61  Score=463.85  Aligned_cols=287  Identities=30%  Similarity=0.505  Sum_probs=253.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |.||+++++.|++.+++++|+|+|+++  ++++++||+|...    ..++...   ++ +++++|||+||+
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~---~~-~~a~~~aDvVii   75 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGT---ND-YGPTEDSDVCII   75 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEE---SS-SGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEEC---CC-HHHhCCCCEEEE
Confidence            79999998 999999999999999889999999988  6899999999752    2344432   23 689999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R~  181 (358)
                      ++|.|+++||+|.|++.+|+++++++++.|.++||+++++++|||+|++|+++   ++.+| +|++||||+| .||++|+
T Consensus        76 ~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~~g-~p~~rviG~~t~LD~~R~  151 (314)
T 3nep_X           76 TAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVA---YEASG-FPTNRVMGMAGVLDTGRF  151 (314)
T ss_dssp             CCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHH---HHHHT-CCGGGEEECCHHHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHH---HHhcC-CChHHEEeecCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999987   67888 9999999995 9999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A  256 (358)
                      ++++|+++|+++++|+++||||||+ ++||+||++++++ |    +++++++++.++++++|++|++.| |+ +++|++|
T Consensus       152 ~~~la~~lgv~~~~v~~~ViG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a  228 (314)
T 3nep_X          152 RSFIAEELDVSVRDVQALLMGGHGD-TMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPG  228 (314)
T ss_dssp             HHHHHHHHTCCGGGEEEEEEESSGG-GEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHH
T ss_pred             HHHHHHHhCcCHHHeEEEEECCCCC-cEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHH
Confidence            9999999999999999999999998 8999999999864 2    467778999999999999999976 44 8999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      .++++++++|+++.   +.++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|+++.
T Consensus       229 ~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~~~~s~P~~lg~~Gv~~v~~l-~L~~~E~~~l~~s~~~l~~~~  301 (314)
T 3nep_X          229 AAAAEMTEAILKDN---KRILPCAAYCDGEYGLDDLFIGVPVKLGAGGVEEVIEV-DLDADEKAQLKTSAGHVHSNL  301 (314)
T ss_dssp             HHHHHHHHHHHHTC---CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---CeEEEEEEEeccccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999985   3588886 678988 57999999999999999999998 999999999999999999443

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=4.4e-61  Score=461.72  Aligned_cols=290  Identities=33%  Similarity=0.513  Sum_probs=264.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC--C--cHHHHHHhhcCC----CCccEEEEecCCccccccC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA--N--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~--~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~   95 (358)
                      |..+++||+|||| |.||+++++.++..++ ++|+|+|++  +  .+++++|+.|..    ...++...   +| +++++
T Consensus         4 m~~~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t---~d-~~a~~   77 (315)
T 3tl2_A            4 MTIKRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT---SD-YADTA   77 (315)
T ss_dssp             CCCCCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE---SC-GGGGT
T ss_pred             cccCCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc---CC-HHHhC
Confidence            4445679999998 9999999999999998 899999998  4  578889999864    34566653   34 58999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-c
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t  174 (358)
                      |||+||+++|.|+++|++|.|++.+|+++++++++.+.++||++|++++|||+|++|+++   ++.+| +|++|+||+ |
T Consensus        78 ~aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~---~k~sg-~p~~rviG~gt  153 (315)
T 3tl2_A           78 DSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSV---FKEAG-FPKERVIGQSG  153 (315)
T ss_dssp             TCSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCH
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHH---HHhcC-CChHHEEeecc
Confidence            999999999999999999999999999999999999999999999999999999999987   68888 999999999 8


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      .||++|+++++|+++|+++++|+++||||||+ ++||+||++++++ |    +++++++++.++++++|++|++.+ +||
T Consensus       154 ~LD~~R~~~~la~~lgv~~~~v~~~viG~Hg~-t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kg  231 (315)
T 3tl2_A          154 VLDTARFRTFIAQELNLSVKDITGFVLGGHGD-DMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNG  231 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEBCSGG-GCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             CcHHHHHHHHHHHHhCcCHHHceeeEecCCCC-cceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence            99999999999999999999999999999998 8999999999864 2    577789999999999999999863 789


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      +++||+|.|+++++++|+++.   +.++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus       232 st~~a~a~a~~~~~~ail~~~---~~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  307 (315)
T 3tl2_A          232 SAYYAPAASLVEMTEAILKDQ---RRVLPAIAYLEGEYGYSDLYLGVPVILGGNGIEKIIEL-ELLADEKEALDRSVESV  307 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTC---CEEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCC---CcEEEEEEeccCccCCCceEEEEEEEEeCCEEEEEcCC-CCCHHHHHHHHHHHHHH
Confidence            999999999999999999975   3688887 679998 57899999999999999999998 99999999999999999


Q ss_pred             HH
Q 018314          328 HI  329 (358)
Q Consensus       328 ~~  329 (358)
                      +.
T Consensus       308 ~~  309 (315)
T 3tl2_A          308 RN  309 (315)
T ss_dssp             HH
T ss_pred             HH
Confidence            84

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=7.4e-61  Score=456.06  Aligned_cols=279  Identities=29%  Similarity=0.419  Sum_probs=254.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |.+|+++++.|+..+++++|+|+|+++  ++++++|++|..    .+.++..   ++| +++++|||+||+
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~---t~d-~~a~~~aDiVVi   75 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE---eCC-HHHhCCCCEEEE
Confidence            69999998 999999999999999889999999987  577899998865    2335554   245 789999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++|++|.|++.+|+++++++++.|.++||++++|++|||+|++|+++   ++.+| +|++||||+ |.||++|+
T Consensus        76 aag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd~~t~~~---~k~~g-~p~~rviG~gt~LD~~R~  151 (294)
T 1oju_A           76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGMGNQLDSQRL  151 (294)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEECSHHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcchHHHHHH---HHhcC-CCHHHEeecccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999886   78888 999999999 79999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI  261 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~  261 (358)
                      ++++| ++|++|++ +++||||||+ ++||+||++++++ .+  +++++.++++++|++|++.   ||+++||+|.|+++
T Consensus       152 ~~~la-~l~v~~~~-~~~V~G~Hg~-t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~---kG~t~~~~a~a~~~  222 (294)
T 1oju_A          152 KERLY-NAGARNIR-RAWIIGEHGD-SMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKR---KGATIFGPAVAIYR  222 (294)
T ss_dssp             HHHHH-HTTCBSCC-CCCEEBCSST-TCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHH---HSSCCHHHHHHHHH
T ss_pred             HHHHH-HhCCCccC-ceEEEecCCC-ceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHh---cCCcchHHHHHHHH
Confidence            99999 99999999 9999999998 8999999999854 22  5789999999999999985   58999999999999


Q ss_pred             HHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          262 FADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       262 li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      ++++|+++.+   .++|++ +++|+| .+++|||+||++|++|++ ++++ +|+++|+++|++|++.|+..
T Consensus       223 ~~~ail~~~~---~v~~~s~~~~g~yg~~~~~~s~P~~~g~~Gv~-v~~l-~L~~~E~~~l~~s~~~l~~~  288 (294)
T 1oju_A          223 MVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRER  288 (294)
T ss_dssp             HHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCC---eEEEEEecccccCCCCceEEEEEEEEeCCEEE-EecC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999853   588887 689988 459999999999999999 9888 99999999999999999843

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=4.1e-60  Score=456.26  Aligned_cols=286  Identities=36%  Similarity=0.542  Sum_probs=260.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ++||+|||| |.||+++++.|+..++. +|+|+|+++  .+++++||+|..    .+.++..+   +| +++++|||+||
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t---~d-~~a~~~aDvVI   78 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGT---ND-YKDLENSDVVI   78 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE---SC-GGGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEc---CC-HHHHCCCCEEE
Confidence            579999997 99999999999999886 999999987  578899999974    23456542   45 58999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~R  180 (358)
                      +++|.|+++|++|.|++.+|+++++++++.|.++||++++|++|||+|++|+++   ++.+| +|++||||+| .||++|
T Consensus        79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~~R  154 (321)
T 3p7m_A           79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNML---QKFSG-VPDNKIVGMAGVLDSAR  154 (321)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEEECHHHHHHH
T ss_pred             EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHhcC-CCHHHEEeeccchHHHH
Confidence            999999999999999999999999999999999999999999999999999886   78887 9999999996 899999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGS  250 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~  250 (358)
                      +++++|+++|+++++|+++|||+||+ ++||+||++++++ |         +++++++++.++++++|++|++.+ |+|+
T Consensus       155 ~~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~gs  232 (321)
T 3p7m_A          155 FRTFLADELNVSVQQVQAYVMGGHGD-TMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGS  232 (321)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEECSGG-GEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcCHHHceEeeecCcCC-ceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CCCC
Confidence            99999999999999999999999998 8999999999854 2         367788999999999999999976 8899


Q ss_pred             ccchHHHHHHHHHHHHHccCCCCCcEEEee-eec-CCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 018314          251 ATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQ-STV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPT  326 (358)
Q Consensus       251 t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~-~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~  326 (358)
                      ++||+|.|+++++++|++|.+   .++|++ +++ |+|  ++|+|||+||++|++|++++ ++ +|+++|+++|++|++.
T Consensus       233 a~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~~g~ygi~~~v~~s~P~~~g~~Gv~~v-~l-~L~~~E~~~l~~s~~~  307 (321)
T 3p7m_A          233 AYYAPAAAGIQMAESFLKDKK---MILPCAAKVKAGMYGLDEDLFVGVPTEISANGVRPI-EV-EISDKEREQLQVSINA  307 (321)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCC---EEEEEEEEECTTGGGCSSCEEEEEEEEEETTEEEEC-CC-CCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCC---cEEEEEEEccCcccCCCCCeEEEEEEEEcCCEEEEe-CC-CCCHHHHHHHHHHHHH
Confidence            999999999999999999863   688987 567 787  55999999999999999999 88 9999999999999999


Q ss_pred             HHHH
Q 018314          327 FHIR  330 (358)
Q Consensus       327 L~~~  330 (358)
                      |+++
T Consensus       308 l~~~  311 (321)
T 3p7m_A          308 IKDL  311 (321)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9943

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=1.5e-60  Score=459.55  Aligned_cols=288  Identities=32%  Similarity=0.506  Sum_probs=257.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +++||+|||| |.||+++++.|+..++. +|+|+|+++  .+++++||.|..    .+.++..+   +|+ ++++|||+|
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t---~d~-~a~~~aDiV   79 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA---NDY-AAIEGADVV   79 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE---SSG-GGGTTCSEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe---CCH-HHHCCCCEE
Confidence            3579999998 99999999999999985 999999987  578899999874    24456643   454 899999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-cccHH
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLDVV  179 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~lds~  179 (358)
                      |+++|.|+++|++|.|++.+|+++++++++.|+++||++++|++|||+|++|+++   ++.+| +|++||||+| .||++
T Consensus        80 Iiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~---~k~sg-~p~~rviG~~~~LD~~  155 (324)
T 3gvi_A           80 IVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWAL---QKFSG-LPAHKVVGMAGVLDSA  155 (324)
T ss_dssp             EECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHH
T ss_pred             EEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHH---HHhcC-CCHHHEEeecCccHHH
Confidence            9999999999999999999999999999999999999999999999999999986   78888 9999999996 89999


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      |+++++|+++|+++++|+++|||+||+ ++||+||++++++ +         +++++++++.++++++|++|++.+ |+|
T Consensus       156 R~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-gkg  233 (324)
T 3gvi_A          156 RFRYFLSEEFNVSVEDVTVFVLGGHGD-SMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTG  233 (324)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSC
T ss_pred             HHHHHHHHHhCcCHHHCeEEEEcCCCC-ceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc-CCC
Confidence            999999999999999999999999998 8999999999853 1         367788999999999999999976 889


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      +++||+|.|+++++++|+++.+   .++|++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus       234 sa~~~~a~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~v~~s~P~~~g~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  309 (324)
T 3gvi_A          234 SAFYAPAASAIQMAESYLKDKK---RVLPVAAQLSGQYGVKDMYVGVPTVIGANGVERIIEI-DLDKDEKAQFDKSVASV  309 (324)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCEEEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999864   688987 678988 45899999999999999999998 99999999999999999


Q ss_pred             HHH
Q 018314          328 HIR  330 (358)
Q Consensus       328 ~~~  330 (358)
                      +..
T Consensus       310 ~~~  312 (324)
T 3gvi_A          310 AGL  312 (324)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            843

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=3.2e-60  Score=460.08  Aligned_cols=289  Identities=26%  Similarity=0.384  Sum_probs=249.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC-ccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +++||+||||+|+||+++++.++..+...||+|+|+++  ++++++||+|..++ .++..   ++|++++++|||+||++
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~---t~d~~~al~dADvVvit   83 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF---TSDIKEALTDAKYIVSS   83 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE---ESCHHHHHTTEEEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE---cCCHHHHhCCCCEEEEc
Confidence            35699999977999999999999999888999999987  58999999998643 35554   25667899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeE-EEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~-iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      +|.|+++|++|.|++.+|+++++++++.|+++||+++ ++++|||+|++|+++   ++.+| +|++||+|+|.||++|++
T Consensus        84 aG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~i~---~k~sg-~p~~rv~g~t~LDs~R~~  159 (343)
T 3fi9_A           84 GGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQ  159 (343)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEEECCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHHHH---HHHcC-CCcceEEEecCcHHHHHH
Confidence            9999999999999999999999999999999999996 899999999999987   78998 999999999999999999


Q ss_pred             HHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          183 TFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       183 ~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      +++|+++|++|++|+ ++||||||+ ++||+||++++++ |         +++++|+++.++|+++|++|++.| | .++
T Consensus       160 ~~la~~l~v~~~~v~~~~ViGeHgd-s~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g-~ss  236 (343)
T 3fi9_A          160 SELAKHFGIKQSLVTNTRTYGGHGE-QMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLR-G-RSS  236 (343)
T ss_dssp             HHHHHHHTSCGGGEECCCEEESSGG-GEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHH-S-SCC
T ss_pred             HHHHHHhCcCHHHcccceEEEcCCC-ceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHcc-C-CCc
Confidence            999999999999996 899999998 8999999998853 1         467889999999999999999965 2 245


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEe-eeecCCCCCccEEEEeEEEcCCcEEEEecCCC-CCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVEC-SFVQSTVTELPFFASKVRLGKNGVEEVLGLGP-LSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~-s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~-L~~~E~~~L~~s~~~L~~  329 (358)
                      ++|+|.|+++++++|++|.+   .++|+ +++++++.+|+|||+||++|++||+.+ .++. |+++|+++|++|++.|++
T Consensus       237 ~~s~A~a~~~~~~ail~d~~---~v~~~s~~~~g~~~~~v~~s~P~~lg~~Gv~~~-~~~~ll~~~E~~~l~~Sa~~l~~  312 (343)
T 3fi9_A          237 FQSPSYVSIEMIRAAMGGEA---FRWPAGCYVNVPGFEHIMMAMETTITKDGVKHS-DINQLGNEAERAALKESYSHLAK  312 (343)
T ss_dssp             CHHHHHHHHHHHHHHTTSSC---CCSCEEEEEEETTEEEEEEEESEEEETTEEEEC-CGGGSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhCCC---ceEEEEEEEeCCCcCceEEEeEEEEeCCceEEE-ecCCCCCHHHHHHHHHHHHHHHH
Confidence            67999999999999999875   35555 567776667999999999999999876 4412 899999999999999983

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.5e-58  Score=446.77  Aligned_cols=311  Identities=63%  Similarity=0.998  Sum_probs=272.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +++++|||+||||+|+||++++..|+..+++.||+|+|+++..+.++||.|...+.++..+.+++|++++++|||+||++
T Consensus         4 ~~~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~   83 (326)
T 1smk_A            4 GGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVP   83 (326)
T ss_dssp             ----CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEEC
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEc
Confidence            34467899999976999999999999888778999999987678889999876444566544445777899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHH-HHhCCCCCCceEeeccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~-~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      +|.|+++|++|.+++.+|+++++++++.+++++|+++++++|||+|++|++++++. +.+| +|++||||+|.||+.|++
T Consensus        84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~-~p~~rviG~~~Ld~~r~~  162 (326)
T 1smk_A           84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGT-YDPKRLLGVTMLDVVRAN  162 (326)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTC-CCTTSEEECCHHHHHHHH
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccC-CCcccEEEEeehHHHHHH
Confidence            99999999999999999999999999999999999999999999999777766544 4466 999999999999999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeec-CCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHH
Q 018314          183 TFYAGKANVNVAEVNVPVVGGH-AGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAI  261 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~h-g~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~  261 (358)
                      +++|+++|++|++|+++|||+| |+ +++|+||++++...+++++++++.+++++++++|++.|.|+|+++||+|.++++
T Consensus       163 ~~la~~l~v~~~~v~~~v~G~H~G~-~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~  241 (326)
T 1smk_A          163 TFVAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVK  241 (326)
T ss_dssp             HHHHHHHTCCGGGCBCCEEECSSGG-GEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHH
T ss_pred             HHHHHHhCcChhheEEEEecccCCc-eEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Confidence            9999999999999999999999 76 899999999987678888899999999999999999766779999999999999


Q ss_pred             HHHHH---HccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHhhhhHHHh
Q 018314          262 FADAC---LKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQF  338 (358)
Q Consensus       262 li~ai---l~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~~~~~~~~  338 (358)
                      ++++|   ++|.+   .++++++++|++++|+|||+||++|++|+++++++++|+++|+++|++|++.|+.+. .+..+|
T Consensus       242 ~~~ai~~~~~~~~---~v~~~~~~~g~~~~~~~~~vP~~ig~~Gv~~i~~~~~L~~~e~~~l~~s~~~l~~~~-~~~~~~  317 (326)
T 1smk_A          242 FADACLRGLRGDA---GVIECAFVSSQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSI-EKGVSF  317 (326)
T ss_dssp             HHHHHHHHHHTCS---CEEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHhCCCC---eEEEEEeeccccCCceEEEEEEEEeCCeeEEEcCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence            99999   77654   588888888888889999999999999999999933999999999999999998433 334445


Q ss_pred             cc
Q 018314          339 FR  340 (358)
Q Consensus       339 ~~  340 (358)
                      ..
T Consensus       318 ~~  319 (326)
T 1smk_A          318 IR  319 (326)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=5.8e-59  Score=454.06  Aligned_cols=314  Identities=25%  Similarity=0.236  Sum_probs=256.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcE---EEEEecCC------cHHHHHHhhcCCCC--ccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR---LALYDIAN------TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e---i~L~D~~~------~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~   95 (358)
                      +++||+||||+|+||+++++.|+.+++++|   |+|+|.+.      ++|+++||+|+.++  ..++.+   ++.+++++
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~---~~~y~~~~  107 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG---IDPYEVFE  107 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE---SCHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEe---cCCHHHhC
Confidence            678999999779999999999999998877   77766543      48999999999753  244443   33479999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-  173 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-  173 (358)
                      |||+||++||.||++||+|.|++..|++|++++++.|.++ +|++++|++|||+|++|+++   ++++| ++++|+||. 
T Consensus       108 daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~ia---~k~sg-~~~~rvig~g  183 (375)
T 7mdh_A          108 DVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAP-DIPAKNFHAL  183 (375)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCT-TSCGGGEEEC
T ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHHH---HHHcC-CCCccEEEee
Confidence            9999999999999999999999999999999999999998 79999999999999999987   78888 566688888 


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C---C-CHHH--HHHHHHHHhcCcceEEeec
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N---L-ADED--IKALTKRTQDGGTEVVEAK  245 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~---~-~~~~--~~~l~~~v~~~~~~i~~~~  245 (358)
                      |.||++||++++|+++|++|++|+. +||||||+ ++||+||++++++ |   + ++++  .+++.++++++|++|++.|
T Consensus       184 T~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeHgd-t~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k  262 (375)
T 7mdh_A          184 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW  262 (375)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ehHHHHHHHHHHHHHhCcChhhcccceEEecCCC-ceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999985 89999998 8999999999864 2   2 2333  3789999999999999854


Q ss_pred             cCCCCccch-HHHHHHHHHHHHHccCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHH
Q 018314          246 AGKGSATLS-MAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEG  319 (358)
Q Consensus       246 ~gkg~t~~s-~A~a~~~li~ail~~~~~~~~v~~~s-~~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~  319 (358)
                         |.++++ .|.++++.+.+|+++.+ ++.++|++ +++| +|  ++|+|||+||++|++|++++++ + +|+++|+++
T Consensus       263 ---G~ts~a~aa~~i~~~i~~~l~g~d-~~~v~~vs~~~~G~~YGi~~dv~~s~P~vlg~~Gv~~iv~~l-~L~~~E~~~  337 (375)
T 7mdh_A          263 ---GRSSAASTAVSIADAIKSLVTPTP-EGDWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDV-SNDDFLWER  337 (375)
T ss_dssp             ---SSCCHHHHHHHHHHHHHHHHSCCC-TTCCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCC-CCCHHHHHH
T ss_pred             ---CCCchHHHHHHHHHHHHHHhcCCC-CCeEEEEEEEeCCccCCCCCceEEEEEEEEcCCeeEEecCCC-CCCHHHHHH
Confidence               555553 34444444444454322 23588987 5788 68  5799999999999999999996 6 999999999


Q ss_pred             HHHHHHHHHHHhhhh--HHHhccccccccccccccc
Q 018314          320 LEKLNPTFHIRKLFQ--ILQFFRKCCTCCSWHQLFG  353 (358)
Q Consensus       320 L~~s~~~L~~~~~~~--~~~~~~~~~~~~~~~~~~~  353 (358)
                      |++|++.|++|+...  ++.-...-|..-+=.+|||
T Consensus       338 l~~Sa~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T 7mdh_A          338 IKKSEAELLAEKKCVAHLTGEGNAYCDVPEDTMLPG  373 (375)
T ss_dssp             HHHHHHHHHHHHHHTHHHHTSSSCCCCCCSTTCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC
Confidence            999999999776644  3434446666655555665

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.6e-59  Score=450.54  Aligned_cols=289  Identities=22%  Similarity=0.372  Sum_probs=249.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +.+||+|||| |+||+++++.|+..+.++||+|+|+++  +++.++||.|.. ....++...   +.+++++|||+||++
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~---~~~~a~~~aDvVii~   79 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS---GEYSDCKDADLVVIT   79 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE---CCGGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEC
Confidence            4479999998 999999999999999999999999986  678899999875 112344432   237899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~  182 (358)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|++
T Consensus        80 ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~  155 (318)
T 1ez4_A           80 AGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGSGTSLDSSRLR  155 (318)
T ss_dssp             CCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEeccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999886   78887 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----------CCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +++|+++|+++++|+++|||+||+ +++|+||++++++          .++++.++++.+++++++++|++   +||+++
T Consensus       156 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  231 (318)
T 1ez4_A          156 VALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN---LKGATF  231 (318)
T ss_dssp             HHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH---HHSCCC
T ss_pred             HHHHHHhCcChhHEEEEEecccCC-ceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhhee---CCCcch
Confidence            999999999999999999999998 8999999998753          15667789999999999999998   568999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      |++|.|+++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+
T Consensus       232 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  307 (318)
T 1ez4_A          232 YGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQDSAATLKKV  307 (318)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   577776 578888 34999999999999999999998 99999999999999999944


Q ss_pred             h
Q 018314          331 K  331 (358)
Q Consensus       331 ~  331 (358)
                      .
T Consensus       308 ~  308 (318)
T 1ez4_A          308 L  308 (318)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=8e-59  Score=448.42  Aligned_cols=289  Identities=27%  Similarity=0.421  Sum_probs=254.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +++||+|||| |+||+++++.|+..+.++||+|+|+++  +++.++||.|.. ....++...   +.+++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS---AEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE---CCGGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE---CCHHHhCCCCEEEEc
Confidence            4579999998 999999999999999899999999986  678899999975 112344432   237899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~  182 (358)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYAT---WKLSG-FPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH---HHHcC-CCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999886   78887 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-----------CCCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      +++|+++|+++++|+++|||+||+ +++|+||++++++           .++++.++++.+++++++++|++   +||++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~---~kG~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIK---LKGAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSSST-TCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHhCCChhheEEEEecccCC-ceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHH---cCCCc
Confidence            999999999999999999999998 8999999998753           15566788999999999999998   56899


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|++|.|+++++++|+++.+   .+++++ +++|+| .+|+|||+||++|++|+++++++ +|+++|+++|++|++.|+.
T Consensus       236 ~~~~a~aa~~~~~ai~~~~~---~~~~vsv~~~G~yg~~~~~~svP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  311 (326)
T 2zqz_A          236 FYGIATALARISKAILNDEN---AVLPLSVYMDGQYGLNDIYIGTPAVINRNGIQNILEI-PLTDHEEESMQKSASQLKK  311 (326)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---cEEEEEEeccCccCCCceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999864   577776 678888 34999999999999999999997 9999999999999999994


Q ss_pred             Hh
Q 018314          330 RK  331 (358)
Q Consensus       330 ~~  331 (358)
                      +.
T Consensus       312 ~~  313 (326)
T 2zqz_A          312 VL  313 (326)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=7.3e-59  Score=450.39  Aligned_cols=298  Identities=26%  Similarity=0.300  Sum_probs=247.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      ++.||+|+||+|+||+++++.|++.++++     ||+|||+++    .+|.++||+|+.++.....+. ++|.+++++||
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-~~~~~~a~~~a  101 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-TADPRVAFDGV  101 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-ESCHHHHTTTC
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-cCChHHHhCCC
Confidence            35699999988999999999999988765     999999986    368899999998765444443 35668999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHh-CCCCCCceEee-c
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA-GTYNEKKLFGV-T  174 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~s-g~~~~~kviG~-t  174 (358)
                      |+||++||.||||||+|.|++..|++|++++++.|.+++ |+++++++|||+|++++++   ++++ | +++.|+||. |
T Consensus       102 dvVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g-~~~~r~i~~~t  177 (345)
T 4h7p_A          102 AIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQG-KLNPRHVTAMT  177 (345)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTT-CSCGGGEEECC
T ss_pred             CEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccC-CCCcceeeecc
Confidence            999999999999999999999999999999999999997 7899999999999999986   5554 5 666666655 9


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCc-eEEEeecCCcccccccccccCCC-C----CCHHHH-HHHHHHHhcCcceEEeeccC
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAGITILPLFSQATPKA-N----LADEDI-KALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~-~~l~~~v~~~~~~i~~~~~g  247 (358)
                      .||++|+++++|+++|++|++|+ .+|||+||+ ++||+||++++++ +    ++++.+ +++.++++++|++|++.|  
T Consensus       178 ~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG~-t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~g~eIi~~k--  254 (345)
T 4h7p_A          178 RLDHNRALSLLARKAGVPVSQVRNVIIWGNHSS-TQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGRGAEIIQLR--  254 (345)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEEBCSST-TCEEECTTCEETTEEGGGGCCC------HHHHHHHHHHHHHHHH--
T ss_pred             chhHHHHHHHHHHHHCcChhheecceeecCCCC-eEEeeeccceECCccHHHhcchhhHHHHHHHHHHhhhhhhhhcC--
Confidence            99999999999999999999997 568999998 8999999999864 2    333333 579999999999999975  


Q ss_pred             CCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-e-cCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-V-QSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (358)
Q Consensus       248 kg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~-~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s  323 (358)
                      +++++||+|.|+++++++|+++.+... ++++.+ . +|+|  ++|+|||+||+++ +|++++++.++|+++|+++|++|
T Consensus       255 g~ss~~s~a~a~~~~~~~~l~~~~~~~-~vs~~v~s~~g~YGi~~~v~~s~Pv~~~-~G~~~iv~~l~l~~~e~~~l~~s  332 (345)
T 4h7p_A          255 GLSSAMSAAKAAVDHVHDWIHGTPEGV-YVSMGVYSDENPYGVPSGLIFSFPCTCH-AGEWTVVSGKLNGDLGKQRLAST  332 (345)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCTTCCCSSCEEEEEEEEE-TTEEEECCSCC-----CGGGHHH
T ss_pred             CCcchhhHHHHHHHHHHHHhcCCCCce-EEEEEEEeCCCCcCCCCCEEEEEEEEEe-CCEEEEeCCCCCCHHHHHHHHHH
Confidence            357899999999999999999986543 333333 3 5778  6899999999997 67788887558999999999999


Q ss_pred             HHHHHHHhhhh
Q 018314          324 NPTFHIRKLFQ  334 (358)
Q Consensus       324 ~~~L~~~~~~~  334 (358)
                      ++.|++|+.+|
T Consensus       333 ~~~L~~E~~~A  343 (345)
T 4h7p_A          333 IAELQEERAQA  343 (345)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHc
Confidence            99999888765

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=1.8e-58  Score=443.19  Aligned_cols=288  Identities=23%  Similarity=0.328  Sum_probs=258.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|||| |+||+++++.|+++++++||+|+|+++  ++++++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999998 999999999999999899999999987  6788999999751 12333332  23 689999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~  184 (358)
                      .|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~s~-~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVA---YALSG-LPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHH---HHHcC-CCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887   78888 999999999 99999999999


Q ss_pred             HHHHcCCCCCCCceEEEeecCCcccccccccccCCCC------------CCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN------------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~------------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|+++|+++++|+++|+|+||+ +++|+||++++++.            ++++.++++.+++++++++|++   +||+++
T Consensus       153 la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEHGD-SEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIE---GKGATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHH---HHSCCC
T ss_pred             HHHHhCcCHHHeEEEEecccCC-ccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHh---ccCCcH
Confidence            9999999999999999999998 89999999987531            4667789999999999999998   568999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      |++|.++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+
T Consensus       229 ~~~a~a~~~~~~ai~~~~~---~~~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~  304 (310)
T 2xxj_A          229 YGIGAGLARLVRAILTDEK---GVYTVSAFTPEVAGVLEVSLSLPRILGAGGVAGTVYP-SLSPEERAALRRSAEILKEA  304 (310)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCC---CEEEEEEEEcCccCCccEEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   577776 568877 46899999999999999999998 99999999999999999955


Q ss_pred             hh
Q 018314          331 KL  332 (358)
Q Consensus       331 ~~  332 (358)
                      ..
T Consensus       305 ~~  306 (310)
T 2xxj_A          305 AF  306 (310)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=8.2e-58  Score=438.27  Aligned_cols=284  Identities=25%  Similarity=0.448  Sum_probs=258.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEEc
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ||+|||| |+||+++++.++..++ +||+|+|+++  +++.++|+.|..    ...+++.+   +|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t---~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS---NSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE---SCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC---CCH-HHhCCCCEEEEe
Confidence            7999998 9999999999998888 8999999987  678899999863    24456642   454 899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~  182 (358)
                      +|.|+++|++|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVDAMTYVM---YKKTG-FPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH---HHhcC-CChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999999886   67887 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCC-CccchHH
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKG-SATLSMA  256 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg-~t~~s~A  256 (358)
                      +++|+++|+++++|+++|||+||+ +++|+||++++++ +    +++++++++.+++++++++|++   +|| +++|++|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMHGQ-KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITE---LRGYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHH---HHSSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEeccCC-ceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhh---CCCCccHHHHH
Confidence            999999999999999999999998 8999999998854 2    5777899999999999999998   568 9999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      .++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+++.
T Consensus       227 ~a~~~~~~ai~~~~~---~v~~vs~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~~~  299 (308)
T 2d4a_B          227 AGLVLTVEAIKRDSK---RIYPYSLYLQGEYGYNDIVAEVPAVIGKSGIERIIEL-PLTEDEKRKFDEAVQAVKKLV  299 (308)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC---cEEEEEEEEcCccCCCceEEEEEEEEcCCceEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588875 578887 57999999999999999999998 999999999999999999443

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=1.5e-57  Score=438.21  Aligned_cols=289  Identities=24%  Similarity=0.373  Sum_probs=258.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +++||+|||| |+||+++++.|+..++++||+|+|+++  .+++++||.|...  ...++...   +.+++++|||+||+
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~---~~~~a~~~aDvVvi   80 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA---GEYSDCHDADLVVI   80 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE---CCGGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe---CCHHHhCCCCEEEE
Confidence            5679999998 999999999999988889999999987  5788899988531  12334432   23789999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++|++|.+++.+|+++++++++.|++++|++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|+
T Consensus        81 ~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~---~k~~~-~p~~rviG~gt~lD~~r~  156 (317)
T 3d0o_A           81 CAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYAT---WKFSG-LPKERVIGSGTILDSARF  156 (317)
T ss_dssp             CCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHhC-CCHHHEEecCccccHHHH
Confidence            99999999999999999999999999999999999999999999999999886   78887 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      ++++|+++|+++++|+++|||+||+ +++|+||++++++ +         ++++.++++.+++++++++|++   +||++
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  232 (317)
T 3d0o_A          157 RLLLSEAFDVAPRSVDAQIIGEHGD-TELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQ---AKGAT  232 (317)
T ss_dssp             HHHHHHHHTSCGGGCBCCEEBCSST-TCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHH---HHSCC
T ss_pred             HHHHHHHhCcChhhEEEEEEecCCC-CeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEe---CCCCc
Confidence            9999999999999999999999998 8999999998753 1         4555678999999999999998   56899


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|++|.|+++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.
T Consensus       233 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~  308 (317)
T 3d0o_A          233 YYGVAMGLARITEAIFRNED---AVLTVSALLEGEYEEEDVYIGVPAVINRNGIRNVVEI-PLNDEEQSKFAHSAKTLKD  308 (317)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999854   577776 578888 34999999999999999999998 9999999999999999995


Q ss_pred             Hh
Q 018314          330 RK  331 (358)
Q Consensus       330 ~~  331 (358)
                      +.
T Consensus       309 ~~  310 (317)
T 3d0o_A          309 IM  310 (317)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=3.1e-59  Score=449.95  Aligned_cols=276  Identities=22%  Similarity=0.308  Sum_probs=250.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-C--CccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-T--RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~--~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.+||+|||| |.||+++++.++..++++||+|+|+++  .+++++||+|.. +  ..++..   ++|+ ++++|||+||
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~---t~d~-~~~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVS---GKDY-SVSAGSKLVV   94 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEE---ESSS-CSCSSCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEE---cCCH-HHhCCCCEEE
Confidence            5689999998 999999999999999999999999987  689999999973 2  234443   3464 5699999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R  180 (358)
                      +++|.|+++||+|.|++.+|+++++++++.|.+++|++|++++|||+|++|+++   ++.+| +|++||||+ |.||++|
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi~t~~~---~k~sg-~p~~rViG~gt~LDs~R  170 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTDKNKQD---WKLSG-LPMHRIIGSGCNLDSAR  170 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEECCTTHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHHHHHHH---HHHhC-CCHHHeecccCchhHHH
Confidence            999999999999999999999999999999999999999999999999999987   78888 999999999 6899999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHH---
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAY---  257 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~---  257 (358)
                      +++++|+++|+++++|+++|||+||+ ++||+||+.     +    .+++.++++++|++|++   .||+++|++|.   
T Consensus       171 ~~~~lA~~lgv~~~~V~~~V~G~Hg~-t~vp~~S~~-----~----~~~~~~~v~~~g~eii~---~kg~t~~a~a~~~~  237 (330)
T 3ldh_A          171 FRYLMGERLGVHSCLVIGWVIGQHGD-SVPSVWSGM-----W----DAKLHKDVVDSAYEVIK---LKGYTSWAIGLVVS  237 (330)
T ss_dssp             HHHHHHHHHTSCTTTCCEEECSSSST-TCCEEEEEE-----E----ETTEEHHHHHCCCTTST---TCHHHHHHHHHTTH
T ss_pred             HHHHHHHHhCCCHHHeEEEEEcCCCC-ceeeechhh-----H----HHHHHHHHHHHHHHHHH---ccCCcceeeeeecc
Confidence            99999999999999999999999998 899999981     1    16788899999999998   56899999999   


Q ss_pred             --------------HHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEE--EecCCCCCHHHHH
Q 018314          258 --------------AGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEE--VLGLGPLSDFEQE  318 (358)
Q Consensus       258 --------------a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~--i~~l~~L~~~E~~  318 (358)
                                    ++++++++|+++.+   .++|++ +++|+|  ++|+|||+||++| +|+++  ++++ +|+++|++
T Consensus       238 ~~~~~~~~~~~~~~a~~~~~~ail~~~~---~v~~~s~~~~g~yg~~~~v~~s~P~~lg-~Gv~~~~iv~~-~L~~~E~~  312 (330)
T 3ldh_A          238 NPVDVLTYVAWKGCSVADLAQTIMKDLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLN-NGISHCNIVKM-KLKPDEEQ  312 (330)
T ss_dssp             HHHTTSSSCSCTHHHHHHHHHHHHHTCC---EEECCBCCCSSSSSCCSCCCCBCCEEEB-TTBCTTCCCCC-CCCHHHHH
T ss_pred             CccchhhhhhhHHHHHHHHHHHHHcCCC---ceEEEEeecCCccCCCCceEEEEEEEEC-CcEEEcceecC-CCCHHHHH
Confidence                          99999999999854   688887 578888  4599999999999 99999  9997 99999999


Q ss_pred             HHHHHHHHHHH
Q 018314          319 GLEKLNPTFHI  329 (358)
Q Consensus       319 ~L~~s~~~L~~  329 (358)
                      +|++|++.|+.
T Consensus       313 ~l~~s~~~l~~  323 (330)
T 3ldh_A          313 QLQKSATTLWD  323 (330)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999983

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=4.6e-58  Score=443.93  Aligned_cols=301  Identities=26%  Similarity=0.342  Sum_probs=255.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcE-----EEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-----i~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +++||+|+||+|+||+++++.|+.++++++     |+|+|+++    ++|+++||+|+..+. +.....+++.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            578999999779999999999999998888     99999974    579999999976432 22222234557899999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCe-EEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cc
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA-IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TT  175 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a-~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~  175 (358)
                      |+||++||.|+++||+|.|++..|+++++++++.+++++|++ |+|++|||+|++|+++   ++++|.+|+ ++||. |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t~~~---~~~~~~~p~-~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPK-ENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCG-GGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHHHHH---HHHcCCCCc-CEEEEEEh
Confidence            999999999999999999999999999999999999999987 7999999999999987   677873555 55776 99


Q ss_pred             ccHHHHHHHHHHHcCCCCCCCceE-EEeecCCcccccccccccC--CC-CCC------HHH--HHHHHHHHhcCcceEEe
Q 018314          176 LDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATP--KA-NLA------DED--IKALTKRTQDGGTEVVE  243 (358)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~S~~~v--~~-~~~------~~~--~~~l~~~v~~~~~~i~~  243 (358)
                      ||++|+++++|+++|++|++|+++ ||||||+ ++||+||++++  ++ +++      +++  .+++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeHgd-s~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcCCC-CEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 5999999 89999999975  33 332      222  36899999999999998


Q ss_pred             eccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecC-CC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHH
Q 018314          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQS-TV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE  318 (358)
Q Consensus       244 ~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~  318 (358)
                      .|  ++++.|++|.++++++++|+++.+. +.++|+++ ++| +|  ++|+|||+||++ ++|++++++ + +|+++|++
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~~il~~~~~-~~v~~~s~~~~G~~YGi~~~v~~s~P~~~-~~Gv~~iv~~l-~L~~~E~~  310 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVRDIWFGTPE-GEFVSMGIISDGNSYGVPDDLLYSFPVTI-KDKTWKIVEGL-PINDFSRE  310 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHHHHHHCCCT-TCCEEEEEECTTCSSSCCSSCEEEEEEEE-ETTEEEECCCC-CCCHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCcccCCCCCeEEEEEEEE-cCCeEEEcCCC-CCCHHHHH
Confidence            64  3578999999999999999998752 24888875 688 88  479999999999 999999998 6 99999999


Q ss_pred             HHHHHHHHHHHHhhhhHHHhc
Q 018314          319 GLEKLNPTFHIRKLFQILQFF  339 (358)
Q Consensus       319 ~L~~s~~~L~~~~~~~~~~~~  339 (358)
                      +|++|++.|+++...+ ++|+
T Consensus       311 ~l~~sa~~L~~~~~~~-~~~l  330 (333)
T 5mdh_A          311 KMDLTAKELAEEKETA-FEFL  330 (333)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHHHH-HHHH
Confidence            9999999999554433 3443

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.4e-57  Score=438.51  Aligned_cols=292  Identities=27%  Similarity=0.388  Sum_probs=249.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      |.++++||+|||| |+||+++++.|+..++++||+|+|+++  .+++++||.|... ...++...  ++ +++++|||+|
T Consensus         3 m~~~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvV   78 (318)
T 1y6j_A            3 MVKSRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVI   78 (318)
T ss_dssp             ----CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEE
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEE
Confidence            4446789999998 999999999999999999999999987  6788999999752 23444432  34 6899999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHH
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~  179 (358)
                      |+++|.|+++|++|.|++.+|+++++++++.|.+++|++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.
T Consensus        79 ii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~---~k~s~-~p~~rviG~gt~Ld~~  154 (318)
T 1y6j_A           79 VVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGSGTVLDSI  154 (318)
T ss_dssp             EECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHH
T ss_pred             EEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHH---HHHcC-CCHHHEeccCCchHHH
Confidence            9999999999999999999999999999999999999999999999999999887   68888 999999999 999999


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---C--------CHHHHHHHHHHHhcCcceEEeeccC
Q 018314          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---L--------ADEDIKALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---~--------~~~~~~~l~~~v~~~~~~i~~~~~g  247 (358)
                      |+++++|+++|+++++|+++|||+||+ +++|+||++++++ +   +        ++++++++.+++++++++|++   +
T Consensus       155 r~~~~la~~lgv~~~~v~~~v~G~HG~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~  230 (318)
T 1y6j_A          155 RFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIK---N  230 (318)
T ss_dssp             HHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHH---H
T ss_pred             HHHHHHHHHhCCCHHHeEEEEecccCC-cEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhh---C
Confidence            999999999999999999999999998 8999999998742 2   2        233468999999999999998   5


Q ss_pred             CCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 018314          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP  325 (358)
Q Consensus       248 kg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~  325 (358)
                      ||+++|++|.|+++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++
T Consensus       231 kg~t~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~yg~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~~~l~~s~~  306 (318)
T 1y6j_A          231 KGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEALRFSAE  306 (318)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEcCCeeEEEecC-CCCHHHHHHHHHHHH
Confidence            689999999999999999999864   477776 568887 57899999999999999999997 999999999999999


Q ss_pred             HHHHHh
Q 018314          326 TFHIRK  331 (358)
Q Consensus       326 ~L~~~~  331 (358)
                      .|+.+.
T Consensus       307 ~l~~~~  312 (318)
T 1y6j_A          307 QVKKVL  312 (318)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999554

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=2.1e-56  Score=427.62  Aligned_cols=288  Identities=28%  Similarity=0.388  Sum_probs=257.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec--CC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~--~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      |||+||||+|+||++++..|+..+...|++|+|+  ++  .++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999779999999999999888889999999  65  4677889988632 22334332  23 6899999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~  182 (358)
                      +|.|+++|++|.+++.+|+++++++++.+++++|++|++++|||+|++|+++   ++.+| +|++||||+ |.||+.|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~---~~~~~-~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH---HHHcC-CCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999886   78887 999999999 999999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC--CC-CHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHH
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA--NL-ADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAG  259 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~--~~-~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~  259 (358)
                      +++|+++|+++++|+++|||+||+ +++|+||++++++  ++ ++++++++.+++++++++|++   +||+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~---~kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---RKGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---TTSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCCCC-ccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHh---cCCChHHHHHHHH
Confidence            999999999999999999999998 8999999998742  34 777899999999999999998   6789999999999


Q ss_pred             HHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          260 AIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       260 ~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      ++++++|+++++   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+.
T Consensus       230 ~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (303)
T 1o6z_A          230 AHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAEKLSDQY  299 (303)
T ss_dssp             HHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC---CEEEEEEecCCccCCcceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999864   477775 578887 56899999999999999999998 999999999999999998543

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=2.9e-56  Score=427.82  Aligned_cols=287  Identities=30%  Similarity=0.498  Sum_probs=250.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +||+|||| |.||+++++.++..++++ |+|+|+++  .++.++|+.|..    ...+++.+   +|+ ++++|||+||+
T Consensus         3 ~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t---~d~-~a~~~aD~Vi~   76 (309)
T 1ur5_A            3 KKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT---NNY-ADTANSDVIVV   76 (309)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE---SCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC---CCH-HHHCCCCEEEE
Confidence            69999998 999999999999998764 99999987  578889999863    23456642   565 89999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      ++|.|+++|++|.|++.+|+++++++++.|++++|++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|+
T Consensus        77 a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~~~t~~~---~~~~~-~~~~rviG~gt~LD~~r~  152 (309)
T 1ur5_A           77 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIGQAGVLDAARY  152 (309)
T ss_dssp             CCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEECCHHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchHHHHHHH---HHHcC-CCHHHEEECCcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999886   67887 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A  256 (358)
                      ++++|+++|+++++|+++|||+||+ +++|+||++++++ +    +++++++++.+++++++++|++. .+||+++|++|
T Consensus       153 ~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~a  230 (309)
T 1ur5_A          153 RTFIAMEAGVSVEDVQAMLMGGHGD-EMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAPA  230 (309)
T ss_dssp             HHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHHH
T ss_pred             HHHHHHHhCCChhheeEEEecCcCC-ceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHHH
Confidence            9999999999999999999999997 8999999998853 2    47788999999999999999985 35689999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      .++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+.
T Consensus       231 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  303 (309)
T 1ur5_A          231 AATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAVRATL  303 (309)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCceEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588875 678887 57999999999999999999998 999999999999999999543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=2.2e-56  Score=429.90  Aligned_cols=291  Identities=23%  Similarity=0.344  Sum_probs=258.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ++++||+|||| |.||+++++.++..++.+||+|+|+++  .++.++|+.|...  ...++.+.  ++ +++++|||+||
T Consensus         4 ~~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVi   79 (316)
T 1ldn_A            4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVV   79 (316)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEE
Confidence            35679999998 999999999999988889999999987  5777889988642  11344432  23 68999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVR  180 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R  180 (358)
                      +++|.|+++|++|.+++.+|.++++++++.+++++|++|++++|||+|++|+++   ++.+| +|++||||+ |.||+.|
T Consensus        80 ia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~~~~~~~---~~~s~-~p~~rviG~gt~lD~~r  155 (316)
T 1ldn_A           80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGSGTILDTAR  155 (316)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECTTHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHHH---HHHhC-CCHHHEEecccchHHHH
Confidence            999999999999999999999999999999999999999999999999999886   68888 999999999 9999999


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----C-------CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----N-------LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----~-------~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      +++++|+++|+++++|+++|||+||+ +++|+||++++++    .       +++++++++.+++++++++|++   +||
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg  231 (316)
T 1ldn_A          156 FRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE---KKG  231 (316)
T ss_dssp             HHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHH---HHS
T ss_pred             HHHHHHHHhCCCHHHeEEEEecccCC-ceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHh---ccC
Confidence            99999999999999999999999998 8999999988742    1       3455678999999999999998   568


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      +++|++|.|+++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|
T Consensus       232 ~~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~yg~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  307 (316)
T 1ldn_A          232 ATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRFHHSAATL  307 (316)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCcceEEEEEEEEeCCeeEEEccC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999854   577776 578888 57999999999999999999998 99999999999999999


Q ss_pred             HHHhh
Q 018314          328 HIRKL  332 (358)
Q Consensus       328 ~~~~~  332 (358)
                      +++..
T Consensus       308 ~~~~~  312 (316)
T 1ldn_A          308 KSVLA  312 (316)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            95543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=3e-56  Score=426.31  Aligned_cols=282  Identities=21%  Similarity=0.295  Sum_probs=243.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++++||+|||| |+||+++++.++..++++||+|+|+++ ..+.++|+.|...+ +++.+   +|+ ++++|||+||+++
T Consensus        12 ~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~t---~d~-~~l~~aD~Vi~aa   85 (303)
T 2i6t_A           12 KTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEIS---KDL-SASAHSKVVIFTV   85 (303)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEEE---SCG-GGGTTCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEEe---CCH-HHHCCCCEEEEcC
Confidence            45679999998 999999999999999899999999987 67788899986543 67763   565 8899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKT  183 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~  183 (358)
                      |.+ ++||+|.|++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||||+ |.||+.|+++
T Consensus        86 g~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~~~t~~~---~~~~~-~p~~rviG~gt~Ld~~R~~~  160 (303)
T 2i6t_A           86 NSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVEIMTYVT---WKLST-FPANRVIGIGCNLDSQRLQY  160 (303)
T ss_dssp             CC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHHHHHHH
T ss_pred             CCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHHHHHHHH---HHhcC-CCHHHeeCCCCCchHHHHHH
Confidence            996 79999999999999999999999999999999999999999999886   67887 999999999 9999999999


Q ss_pred             HHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCccchHHHHHHHHH
Q 018314          184 FYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFA  263 (358)
Q Consensus       184 ~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li  263 (358)
                      ++|+++|+++++|+++|||+||+ +++|+||+..   ++.   .+++.+++++++++|++   +||+++||+|.++++++
T Consensus       161 ~la~~lgv~~~~v~~~v~G~Hg~-s~~p~~s~~~---~~~---~~~~~~~~~~~g~eii~---~kGst~~~~a~a~~~i~  230 (303)
T 2i6t_A          161 IITNVLKAQTSGKEVWVIGEQGE-DKVLTWSGQE---EVV---SHTSQVQLSNRAMELLR---VKGQRSWSVGLSVADMV  230 (303)
T ss_dssp             HHHHTSCCTTGGGGEEEEBSCSS-SCEEEEBCSS---CCC---CHHHHHHHHHHHHTTSS---SCCCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCChHHeEEEEecCCCC-Cccccccccc---ccc---HHHHHHHHHHHHHHHHH---ccCchHHhHHHHHHHHH
Confidence            99999999999999999999998 8999999863   221   24567778888999987   67899999999999999


Q ss_pred             HHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          264 DACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       264 ~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      ++|+++.+   .+++++ +++|+|  ++|+|||+||++|++|+++++++++|+++|+++|++|++.|++..
T Consensus       231 ~ai~~~~~---~~~~vs~~~~g~yg~~~~~~~~vP~~ig~~Gv~~i~~~~~l~~~e~~~l~~s~~~l~~~~  298 (303)
T 2i6t_A          231 DSIVNNKK---KVHSVSALAKGYYDINSEVFLSLPCILGTNGVSEVIKTTLKEDTVTEKLQSSASSIHSLQ  298 (303)
T ss_dssp             HHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCBCC-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCC---cEEEEEEEeCCccCCCCCeEEEEEEEEECCccEEecCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999875   577776 578887  579999999999999999998886799999999999999999543

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=1.4e-55  Score=423.84  Aligned_cols=290  Identities=27%  Similarity=0.423  Sum_probs=252.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec--CC--cHHHHHHhhcCC-CC-ccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--AN--TPGVAADVGHIN-TR-SEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~--~~--~~~~~~dl~~~~-~~-~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+||||+|+||+++++.|+..+...|++|+|+  ++  ..++++|+.|.. .. ..++...++++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            6999999989999999999999888889999999  64  467889998863 11 223332222236889999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      +||.|+++|++|.+++.+|+++++++++.+++++ ++|++++|||+|++|+++   ++.+| +|++|+||+ |.||+.|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~~~t~~~---~k~~~-~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVDVMTYKA---LVDSK-FERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHHHHHHHH---HHHHC-CCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHHHHHHHH---HHhhC-cChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999999987   67887 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C------CCHHHHHHHHHHHhcCcceEEeeccCCCCccch
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSATLS  254 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s  254 (358)
                      ++++|+++|+++++|++++||+||+ +++|+||++++++ +      +++++++++.+++++++++|++   +||+++|+
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kgs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---LKGGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeeccCC-cccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeec---CCCCcHHH
Confidence            9999999999999999999999998 8999999998853 2      2566689999999999999998   67899999


Q ss_pred             HHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          255 MAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       255 ~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      +|.++++++++|+++.+   .+++++ +++|+|  .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+.
T Consensus       232 ~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  307 (313)
T 1hye_A          232 PAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKSAEIIKKYC  307 (313)
T ss_dssp             HHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCC---eEEEEEEeecceecCccceEEEEEEEEeCCeeEEecCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999864   577776 578887  25999999999999999999998 999999999999999999544

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=5.3e-55  Score=421.23  Aligned_cols=290  Identities=31%  Similarity=0.490  Sum_probs=258.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +++||+|||| |.||++++..|+..++++ |+|+|+++  .++.+.|+.+..    ...+++.+   +|+ ++++|||+|
T Consensus         3 ~~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t---~d~-~al~~aD~V   76 (322)
T 1t2d_A            3 PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS---NTY-DDLAGADVV   76 (322)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE---CCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC---CCH-HHhCCCCEE
Confidence            4579999998 999999999999998764 99999987  577788888752    24456643   565 899999999


Q ss_pred             EEcCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-c
Q 018314          101 IIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (358)
Q Consensus       101 Ii~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t  174 (358)
                      |+++|.|+++|++     |.|++.+|+++++++++.|++++|++|+|++|||+|++|+++   ++.+| +|++||||+ |
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~~~t~~~---~~~~g-~~~~rviG~gt  152 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGLGG  152 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECCH
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHHH---HHhcC-CChHHEEeccC
Confidence            9999999999999     999999999999999999999999999999999999999886   56777 999999999 6


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----------CCCHHHHHHHHHHHhcCcceEEee
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  244 (358)
                      .||++|+++++|+++|+++++|+++|||+||+ +++|+||++++++          .+++++++++.+++++++++|++.
T Consensus       153 ~ld~~R~~~~la~~lgv~~~~v~~~v~G~HG~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~  231 (322)
T 1t2d_A          153 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL  231 (322)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHhCCCHHHeEEEEEcCCCC-cEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999998 8999999988752          146677899999999999999984


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~  322 (358)
                         ||+++||+|.++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++
T Consensus       232 ---kgs~~~~~a~a~~~~~~ai~~~~~---~v~~~s~~~~g~~g~~~~~~~vP~~ig~~Gv~~i~~~-~l~~~e~~~l~~  304 (322)
T 1t2d_A          232 ---HASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  304 (322)
T ss_dssp             ---TSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             ---cCchHHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCCCceEEEEEEEEeCCeeEEeCCC-CCCHHHHHHHHH
Confidence               579999999999999999999864   588875 678888 57999999999999999999998 999999999999


Q ss_pred             HHHHHHHHhhhh
Q 018314          323 LNPTFHIRKLFQ  334 (358)
Q Consensus       323 s~~~L~~~~~~~  334 (358)
                      |++.|+++...+
T Consensus       305 s~~~L~~~~~~~  316 (322)
T 1t2d_A          305 AIAETKRMKALA  316 (322)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh
Confidence            999999665544

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=9.9e-55  Score=420.38  Aligned_cols=299  Identities=34%  Similarity=0.514  Sum_probs=256.9

Q ss_pred             ccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCcc
Q 018314           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQL   90 (358)
Q Consensus        17 ~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~   90 (358)
                      |+.+|.+.+ .++||+|||| |.+|++++..++..+++ +|+|+|+++  .++.++|+.|..    .+.+++.+   +|+
T Consensus         4 ~~~~~~~~~-~~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t---~d~   77 (328)
T 2hjr_A            4 ISYKYNTVI-MRKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE---NNY   77 (328)
T ss_dssp             ----------CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE---SCG
T ss_pred             cchhhcccC-CCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC---CCH
Confidence            566665443 3369999998 99999999999999875 499999987  466677887753    23466653   565


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                       ++++|||+||+++|.|+++|++|.|++.+|+++++++++.|+++||++++|++|||+|++|+++   ++.+| +||+||
T Consensus        78 -~al~~aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~~t~~~---~~~~~-~~~~rv  152 (328)
T 2hjr_A           78 -EYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDAMVYYF---KEKSG-IPANKV  152 (328)
T ss_dssp             -GGGTTCSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGE
T ss_pred             -HHHCCCCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH---HHhcC-CChhhE
Confidence             8999999999999999999999999999999999999999999999999999999999999886   56777 999999


Q ss_pred             Eeec-cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcc
Q 018314          171 FGVT-TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGT  239 (358)
Q Consensus       171 iG~t-~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~  239 (358)
                      ||+| .||++|+++++|+++|+++++|+++|||+||+ +++|+||++++++ +         +++++++++.++++++|+
T Consensus       153 iG~~t~Ld~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~  231 (328)
T 2hjr_A          153 CGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGGHGD-EMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGG  231 (328)
T ss_dssp             EESCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHH
T ss_pred             EEeCcHHHHHHHHHHHHHHhCCCHHHeeEEEecCCCC-ceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHH
Confidence            9995 89999999999999999999999999999998 8999999988753 1         466778899999999999


Q ss_pred             eEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHH
Q 018314          240 EVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ  317 (358)
Q Consensus       240 ~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~  317 (358)
                      +|++.+ ++|+++||+|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++.+ +|+++|+
T Consensus       232 eii~~~-~~gs~~~~~a~a~~~i~~ai~~~~~---~v~~~~v~~~G~~g~~~~~~~vP~~ig~~Gv~~i~~~-~L~~~e~  306 (328)
T 2hjr_A          232 EIVELL-KTGSAFYAPAASAVAMAQAYLKDSK---SVLVCSTYLTGQYNVNNLFVGVPVVIGKNGIEDVVIV-NLSDDEK  306 (328)
T ss_dssp             HHHHHH-SSCCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHH
T ss_pred             HHHhhh-CCCchHHHHHHHHHHHHHHHHcCCC---cEEEEEEeecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHH
Confidence            999853 6789999999999999999999864   578875 578888 47999999999999999999987 9999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 018314          318 EGLEKLNPTFHIRKL  332 (358)
Q Consensus       318 ~~L~~s~~~L~~~~~  332 (358)
                      ++|++|++.|++...
T Consensus       307 ~~l~~s~~~l~~~~~  321 (328)
T 2hjr_A          307 SLFSKSVESIQNLVQ  321 (328)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999995443

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=1.8e-54  Score=418.99  Aligned_cols=294  Identities=27%  Similarity=0.476  Sum_probs=259.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~a   97 (358)
                      |.++++||+|||| |.+|++++..|+..+++ +|+|||+++  .++.+.|+.|..    .+.+++.   ++|+.++++||
T Consensus         5 ~~~~~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~---t~d~~ea~~~a   79 (331)
T 1pzg_A            5 LVQRRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGA   79 (331)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTC
T ss_pred             cCCCCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE---eCCHHHHhCCC
Confidence            5666789999998 99999999999998875 599999987  466667777642    2446665   35776699999


Q ss_pred             CEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           98 DVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        98 DiVIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |+||+++|.|+++|+     +|.+++.+|+++++++++.|+++||++|+|++|||+|++|+++   ++.+| +|++||+|
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~---~~~~~-~~~~rviG  155 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICG  155 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHH---HHhcC-CChhcEEe
Confidence            999999999999999     9999999999999999999999999999999999999999886   67777 99999999


Q ss_pred             e-ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCC----------CCHHHHHHHHHHHhcCcceE
Q 018314          173 V-TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----------LADEDIKALTKRTQDGGTEV  241 (358)
Q Consensus       173 ~-t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~----------~~~~~~~~l~~~v~~~~~~i  241 (358)
                      + |.||++|+++++|+++|+++++|+++|||+||+ ++||+||++++++.          +++++++++.++++++|++|
T Consensus       156 ~gt~LD~~R~~~~la~~lgv~~~~v~~~v~G~Hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ei  234 (331)
T 1pzg_A          156 MACMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEI  234 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCHHHceEEEecCCCC-CEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHH
Confidence            9 699999999999999999999999999999998 89999999987531          46667888999999999999


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG  319 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~  319 (358)
                      ++.. +||+++||+|.++++++++|++|.+   .+++++ +++|+| .+|+|+|+||++|++|+++++.+ +|+++|+++
T Consensus       235 i~~~-~kgst~~~~a~a~~~ii~ai~~~~~---~~~~~~v~~~G~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~  309 (331)
T 1pzg_A          235 VRFL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQ  309 (331)
T ss_dssp             HHHH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHH
T ss_pred             HHhh-cCCCccchHHHHHHHHHHHHHhCCC---cEEEEEEEecCccCCCceEEEEEEEEeCCeeEEecCC-CCCHHHHHH
Confidence            9842 4689999999999999999999864   588875 578887 47999999999999999999997 999999999


Q ss_pred             HHHHHHHHHHHhh
Q 018314          320 LEKLNPTFHIRKL  332 (358)
Q Consensus       320 L~~s~~~L~~~~~  332 (358)
                      |++|++.|+.+..
T Consensus       310 l~~s~~~l~~~~~  322 (331)
T 1pzg_A          310 FQKSVDDVMALNK  322 (331)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999995443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=1.2e-52  Score=402.75  Aligned_cols=288  Identities=31%  Similarity=0.522  Sum_probs=255.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |.+|++++..|+..+...+|+|+|+++  .++..+|+.|..    ...+++.+   +|+ +++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t---~d~-~~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS---NDY-ADTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE---SCG-GGGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC---CCH-HHHCCCCEEEE
Confidence            69999998 999999999999876566999999987  466667787752    23355542   455 45999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRA  181 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~  181 (358)
                      +++.|+++|++|.|++.+|+++++++++.|++++|+++++++|||+|++++++   ++.+| +|++|+||+ |.||+.|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~~~~~~---~~~~~-~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHHHHHHH---HHhcC-CChHHEEECCCchHHHHH
Confidence            99999999999999999999999999999999999999999999999999876   67777 999999999 99999999


Q ss_pred             HHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----CCHHHHHHHHHHHhcCcceEEeeccCCCCccchHH
Q 018314          182 KTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----LADEDIKALTKRTQDGGTEVVEAKAGKGSATLSMA  256 (358)
Q Consensus       182 ~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~~s~A  256 (358)
                      ++++|+++|+++++|++++||+||+ +++|+||++++++ +    +++++++++.+++++++++|++. .+||+++|++|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEcccCC-cEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            9999999999999999999999997 8999999998854 2    57778999999999999999985 35689999999


Q ss_pred             HHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          257 YAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      .++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+.
T Consensus       230 ~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  302 (310)
T 1guz_A          230 SSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIVDENC  302 (310)
T ss_dssp             HHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC---cEEEEEEeecCccCCcceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999864   588875 578887 57999999999999999999998 999999999999999999543

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.4e-52  Score=401.25  Aligned_cols=282  Identities=26%  Similarity=0.339  Sum_probs=227.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |||+|||| |.||+++++.|+..++.++|+|+|+++  .++.++|+.|... ....+...  +| +++++|||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999998 999999999999999889999999987  4677889987651 12233322  24 578999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~  184 (358)
                      .|+++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++   ++.+   |++||||+ |.||+.|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~---~~~~---~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLA---TQLA---PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHH---HHHS---CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHH---HHhC---ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998876   4543   89999999 99999999999


Q ss_pred             HHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          185 YAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       185 la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|+++|+++++|+++++|+||+ +++|+||++++++ +           +++++++++.+++++++++|++   +||+++
T Consensus       151 la~~l~v~~~~v~~~v~G~Hg~-~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~---~kg~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEHGD-SEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIE---GKRATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESSST-TEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCCCC-ceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHh---ccCCcH
Confidence            9999999999999999999998 8999999998853 1           4666789999999999999998   678999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHHh
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRK  331 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~~  331 (358)
                      |++|.++++++++|++|.+   .++|++ +++| | . +|+|+||++|++|+++++++ +|+++|+++|++|++.|+++.
T Consensus       227 ~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g-y-g-~~~~~P~~ig~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~~  299 (304)
T 2v6b_A          227 YGIGAALARITEAVLRDRR---AVLTVSAPTPE-Y-G-VSLSLPRVVGRQGVLSTLHP-KLTGDEQQKLEQSAGVLRGFK  299 (304)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---EEEEEEEEETT-T-T-EEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHhCCC---cEEEEEEEECC-c-C-cEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999854   577776 5688 8 3 99999999999999999998 999999999999999999544

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=7.7e-53  Score=407.33  Aligned_cols=295  Identities=24%  Similarity=0.294  Sum_probs=252.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCC-----cEEEEEecC----C--cHHHHHHhhcCCCC--ccEEEEecCCccc
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIA----N--TPGVAADVGHINTR--SEVAGYMGNDQLG   91 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~-----~ei~L~D~~----~--~~~~~~dl~~~~~~--~~v~~~~~~~d~~   91 (358)
                      +++++||+||||+|+||+++++.|+..+..     .||+|+|++    +  ..++++||.|...+  .+++.   ++|++
T Consensus         2 ~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~---~~~~~   78 (329)
T 1b8p_A            2 AKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTA---HADPM   78 (329)
T ss_dssp             -CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEE---ESSHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEE---ecCcH
Confidence            345789999998899999999999998865     499999998    4  56889999996422  23332   46778


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      ++++|||+||++||.|+++|++|.+++.+|+++++++++.+++++ |++++|++|||+|++|+++   ++.+++||++|+
T Consensus        79 ~al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~~t~~~---~~~~~~~p~~~v  155 (329)
T 1b8p_A           79 TAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANTNAYIA---MKSAPSLPAKNF  155 (329)
T ss_dssp             HHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGE
T ss_pred             HHhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHHHHHHH---HHHcCCCCHHHE
Confidence            999999999999999999999999999999999999999999997 9999999999999999987   677734999999


Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEE
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVV  242 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~  242 (358)
                      +|+|.||+.|+++++|+++|+++++|++ +|||+||+ +++|+||++++++ +    +++++  .+++.+++++++++|+
T Consensus       156 ~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~Hg~-s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii  234 (329)
T 1b8p_A          156 TAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAII  234 (329)
T ss_dssp             EECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHH
T ss_pred             EEeecHHHHHHHHHHHHHhCcCHHHceEEEEEeccCC-cEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999995 68999998 8999999999854 2    23223  4789999999999999


Q ss_pred             eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHH
Q 018314          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQE  318 (358)
Q Consensus       243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~  318 (358)
                      +.| | .+.+++.|.++++++++|+++..  +.+++++ +++|+|  ++|+|||+||++ ++|++++++ + +|+++|++
T Consensus       235 ~~k-g-~~~~~~~a~a~~~~~~ai~~~~~--~~~~~~s~~~~g~yg~~~~~~~s~P~~i-~~Gv~~i~~~~-~l~~~e~~  308 (329)
T 1b8p_A          235 DAR-G-VSSAASAANAAIDHIHDWVLGTA--GKWTTMGIPSDGSYGIPEGVIFGFPVTT-ENGEYKIVQGL-SIDAFSQE  308 (329)
T ss_dssp             HHH-S-SCCHHHHHHHHHHHHHHHHHCCT--TCCEEEEEECCSGGGCCTTCEEEEEEEE-ETTEEEECCCC-CCCHHHHH
T ss_pred             hcc-C-CChHHHHHHHHHHHHHHHhcCCC--CcEEEEEEEecCccCCCCCeEEEEEEEE-cCCEEEecCCC-CCCHHHHH
Confidence            965 3 23344467799999999999842  2477776 567877  689999999999 999999998 7 99999999


Q ss_pred             HHHHHHHHHHHHhh
Q 018314          319 GLEKLNPTFHIRKL  332 (358)
Q Consensus       319 ~L~~s~~~L~~~~~  332 (358)
                      +|++|++.|+++..
T Consensus       309 ~l~~s~~~l~~~~~  322 (329)
T 1b8p_A          309 RINVTLNELLEEQN  322 (329)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999995544

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=4.9e-50  Score=386.14  Aligned_cols=286  Identities=28%  Similarity=0.458  Sum_probs=251.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC---CCccEEEEecCCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      |||+|||| |.||++++..|+..++.++|+|+|+++  .++...++.+..   ...++..    +| ++++++||+||++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~----~d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA----GD-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE----CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe----CC-HHHhCCCCEEEEc
Confidence            69999998 999999999999988878999999986  455566666532   1223432    24 4789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAK  182 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~  182 (358)
                      ++.++++|++|.|++.+|+++++++++.|++++|++++|++|||++++++++   ++.+| +|++||+|+ |.||+.|++
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~r~~  150 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGSGTVLDTARLR  150 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECTTHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHH---HHHhC-CChhhEEeeCccHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998876   56777 999999999 789999999


Q ss_pred             HHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCC-----------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          183 TFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       183 ~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~-----------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      +++|+.+|+++++|+++|+|+||+ +++|+||++++++.           ++++.++++.++++++++++++   +||++
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~hg~-~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~---~kg~~  226 (319)
T 1a5z_A          151 TLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIE---RKGAT  226 (319)
T ss_dssp             HHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHH---HHSCC
T ss_pred             HHHHHHhCcCHHHceEEEEeCCCC-CcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhc---cCCch
Confidence            999999999999999999999998 89999999987531           4666788999999999999998   56899


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|++|.++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++.+ +|+++|+++|++|++.|+.
T Consensus       227 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g~~g~~~~~~~vP~~vg~~Gv~~i~~~-~L~~~e~~~l~~s~~~l~~  302 (319)
T 1a5z_A          227 HYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAFRKSASILKN  302 (319)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCC---CEEEEEEEecCccCccceEEEEEEEEeCCceEEEecC-CCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999854   577776 568877 57899999999999999999997 9999999999999999995


Q ss_pred             Hhh
Q 018314          330 RKL  332 (358)
Q Consensus       330 ~~~  332 (358)
                      +..
T Consensus       303 ~~~  305 (319)
T 1a5z_A          303 AIN  305 (319)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=1.4e-47  Score=368.46  Aligned_cols=289  Identities=33%  Similarity=0.498  Sum_probs=252.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +++||+|||| |.+|++++..|+..++. +|+|+|+++  .++...|+.+..    ...++..+   +|+ +++++||+|
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t---~d~-~a~~~aDiV   76 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT---DDY-ADISGSDVV   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE---SCG-GGGTTCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC---CCH-HHhCCCCEE
Confidence            3579999998 99999999999988864 699999987  455566766542    23456542   465 789999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHH
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~  179 (358)
                      |+++|.|+++|++|.|++.+|.++++++++.|++++|+++++++|||++++++.+   ++.++ +|++|++|+ |.+|+.
T Consensus        77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~---~~~~~-~~~~rviG~~t~ld~~  152 (317)
T 2ewd_A           77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHF---QKVSG-LPHNKVCGMAGVLDSS  152 (317)
T ss_dssp             EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHC-CCGGGEEESCHHHHHH
T ss_pred             EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHH---HHhhC-CCHHHEEeccCcHHHH
Confidence            9999999999999999999999999999999999999999999999999998776   56777 999999999 689999


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----------CCCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      |+++.+|+.+|++++++.++|+|+||+ +++|+||.+++++          -++.++++++.+.++.+++++++.. |+|
T Consensus       153 r~~~~la~~lg~~~~~v~~~v~g~Hg~-~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g  230 (317)
T 2ewd_A          153 RFRTFIAQHFGVNASDVSANVIGGHGD-GMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTG  230 (317)
T ss_dssp             HHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSS
T ss_pred             HHHHHHHHHhCcChhhceEEEEecCCC-ceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCC
Confidence            999999999999999999999999997 8999999997643          1467778888888888899998863 678


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      +++|++|.++++++++|+++.+   .+++++ +++|+| .+|+|+|+||++|++|+++++.+ +|+++|+++|++|++.|
T Consensus       231 ~~~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~G~~g~~~~~~~~P~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l  306 (317)
T 2ewd_A          231 TAYFAPAAAAVKMAEAYLKDKK---AVVPCSAFCSNHYGVKGIYMGVPTIIGKNGVEDILEL-DLTPLEQKLLGESINEV  306 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSSTTCSSEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHcCCC---eEEEEEEEecCccCCcceEEEeEEEEcCCeeEEecCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999998764   577775 568888 57999999999999999999997 99999999999999999


Q ss_pred             HHHh
Q 018314          328 HIRK  331 (358)
Q Consensus       328 ~~~~  331 (358)
                      ++..
T Consensus       307 ~~~~  310 (317)
T 2ewd_A          307 NTIS  310 (317)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8443

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=6.9e-48  Score=369.28  Aligned_cols=285  Identities=20%  Similarity=0.264  Sum_probs=242.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      |+||+|||| |.||++++..|+..+...+|+|+|+++  .++.+.++.|..  ....++.+.  +|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--NDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEe--CCH-HHhCCCCEEEEe
Confidence            479999997 999999999999888556999999986  456666766542  112334322  455 789999999999


Q ss_pred             CCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccH
Q 018314          104 AGVPRK----PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDV  178 (358)
Q Consensus       104 ag~~~~----~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds  178 (358)
                      ++.|++    +|++|.|++.+|+++++++++.+++++|+++++++|||+|++++++   ++.++ +|++|++|+ |.+|+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~---~~~~~-~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHHHHHHHH---HHhcC-CCHHHEeecCccchH
Confidence            999998    9999999999999999999999999999999999999999998876   56667 999999999 99999


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C------CCHHHHHHHHHHHhcCcceEEeeccCCCCc
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------LADEDIKALTKRTQDGGTEVVEAKAGKGSA  251 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~------~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t  251 (358)
                      .|+++.+++.+++++.+++++++|+||+ +++|+||++.+++ +      ++++.++++.++++++++++++.   ||++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNG---KGYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHH---HSSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCCCC-cEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhc---cCCc
Confidence            9999999999999999999999999998 8999999998753 2      45667899999999999999984   5789


Q ss_pred             cchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 018314          252 TLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIR  330 (358)
Q Consensus       252 ~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~~  330 (358)
                      +|++|.++++++++|+++.+   .+++++ +++|   +|+|+|+||++|++|+++++++ +|+++|+++|++|++.|+.+
T Consensus       229 ~~~~a~a~~~~~~ai~~~~~---~~~~~~~~~~g---~~~~~~vP~~i~~~Gv~~i~~~-~l~~~e~~~l~~s~~~l~~~  301 (309)
T 1hyh_A          229 SYGVATSAIRIAKAVMADAH---AELVVSNRRDD---MGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDYIQQR  301 (309)
T ss_dssp             CHHHHHHHHHHHHHHHTTCC---EEEEEEEECTT---TCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCC---cEEEEEEEECC---CCeEEEEEEEEeCCceEEEeCC-CCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874   578876 4566   6899999999999999999998 99999999999999999954


Q ss_pred             h
Q 018314          331 K  331 (358)
Q Consensus       331 ~  331 (358)
                      .
T Consensus       302 ~  302 (309)
T 1hyh_A          302 F  302 (309)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=7.8e-44  Score=343.61  Aligned_cols=295  Identities=26%  Similarity=0.337  Sum_probs=246.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCC-----cEEEEEecCC----cHHHHHHhhcCCCC--ccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTR--SEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~-----~ei~L~D~~~----~~~~~~dl~~~~~~--~~v~~~~~~~d~~~al~   95 (358)
                      ++|||+|+||+|++|++++..|+..+..     .+|+|+|+++    ..+.+.|+.|....  ..+..   +++++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~---~~~~~~a~~   79 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEA---TDDPKVAFK   79 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE---ESCHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEe---ccChHHHhC
Confidence            4579999998899999999999988764     4999999874    35677899876422  12332   345678999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      |+|+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||+|.++++.   ++.++.++|.+++|.|
T Consensus        80 ~~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~---~~~~~~~~p~~~yg~t  156 (327)
T 1y7t_A           80 DADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMT  156 (327)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEECC
T ss_pred             CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHH---HHHcCCCChhheeccc
Confidence            99999999999999999999999999999999999999998 9999999999999888765   4555238899999999


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C----CCHHH-HHHHHHHHhcCcceEEeeccC
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED-IKALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~-~~~l~~~v~~~~~~i~~~~~g  247 (358)
                      .+|+.|+.+.+++.+|+++..++. +|+|+|++ +++|.|+++.+++ +    ++++. .+++.++++++|++|++.| |
T Consensus       157 kl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g  234 (327)
T 1y7t_A          157 RLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-G  234 (327)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-S
T ss_pred             hHHHHHHHHHHHHHhCcChhheeeeEEEcCCCC-eEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-C
Confidence            999999999999999999999985 78999997 8999999987753 2    24333 5899999999999999975 3


Q ss_pred             CCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEec-CCCCCHHHHHHHHHH
Q 018314          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLG-LGPLSDFEQEGLEKL  323 (358)
Q Consensus       248 kg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~-l~~L~~~E~~~L~~s  323 (358)
                       +++++++|.|+++++++|+++.+ ++.+++++ +++|+|  ++|+|||+||++ ++|++++++ + +|+++|+++|++|
T Consensus       235 -~~~~~~~a~a~~~~~~~i~~~~~-~~~~~~~~~~~~g~yg~~~~~~~~~P~~i-~~G~~~i~~~~-~l~~~e~~~l~~s  310 (327)
T 1y7t_A          235 -ASSAASAANAAIEHIRDWALGTP-EGDWVSMAVPSQGEYGIPEGIVYSFPVTA-KDGAYRVVEGL-EINEFARKRMEIT  310 (327)
T ss_dssp             -SCCHHHHHHHHHHHHHHHHTBCC-TTCCEEEEEECSSGGGCCTTSEEEEEEEE-ETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHHHHcCCC-CCeEEEEEEEecCccCCCCCeEEEEEEEE-cCCeEEecCCC-CCCHHHHHHHHHH
Confidence             23445678999999999999962 12477776 467877  589999999999 999999988 6 9999999999999


Q ss_pred             HHHHHHHhhh
Q 018314          324 NPTFHIRKLF  333 (358)
Q Consensus       324 ~~~L~~~~~~  333 (358)
                      ++.|+.+...
T Consensus       311 ~~~l~~~~~~  320 (327)
T 1y7t_A          311 AQELLDEMEQ  320 (327)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999955443

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=1.5e-42  Score=347.41  Aligned_cols=291  Identities=13%  Similarity=0.125  Sum_probs=224.8

Q ss_pred             CceEEEEcCCCCh-HHHHHHHHHh--CCC-CcEEEEEecCC--cHHH-HHHhh-----cCCCCccEEEEecCCccccccC
Q 018314           28 DRKVAVLGAAGGI-GQPLALLMKL--NPL-VSRLALYDIAN--TPGV-AADVG-----HINTRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~v-G~~~a~~l~~--~~~-~~ei~L~D~~~--~~~~-~~dl~-----~~~~~~~v~~~~~~~d~~~al~   95 (358)
                      ++||+|||| |++ |..++..|+.  .++ ..||+|||+++  .... ..|+.     +...+.+++.   ++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~---t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEE---eCCHHHHhC
Confidence            579999998 888 7777777776  555 78999999986  3211 12222     2233456665   367778999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHH--------------------HHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHH
Q 018314           96 DSDVVIIPAGVPRKPGMTRDD--------------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~--------------------~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~  155 (358)
                      |||+||+++|.++++|++|.+                    ++.+|+++++++++.|+++|||||+|++|||+|++|+++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~  162 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  162 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            999999999998888877764                    489999999999999999999999999999999999886


Q ss_pred             HHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-----------ecCCcccccccccccCC-----
Q 018314          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQATPK-----  219 (358)
Q Consensus       156 ~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~S~~~v~-----  219 (358)
                         ++.+   |++||||+|... .|+++.+|+.+|+++++|+++++|           +||+ +++|.|+.....     
T Consensus       163 ---~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~G~-d~~p~~~~~~~~~~~~g  234 (450)
T 1s6y_A          163 ---LRYT---KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLDGV-EVTEKVIDLVAHPDRSG  234 (450)
T ss_dssp             ---HHHC---CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHSCC----
T ss_pred             ---HHhC---CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeCCc-CchHhHHHHHhhhcccc
Confidence               5653   677999998653 599999999999999999999999           9998 899999874321     


Q ss_pred             --------CCCC---------------------HHHHH-------------HHHHHHhcCcceEE-----eecc--CCCC
Q 018314          220 --------ANLA---------------------DEDIK-------------ALTKRTQDGGTEVV-----EAKA--GKGS  250 (358)
Q Consensus       220 --------~~~~---------------------~~~~~-------------~l~~~v~~~~~~i~-----~~~~--gkg~  250 (358)
                              .++.                     ++.++             ++.+++++.+++++     +.+.  -.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~g~~p~~y~~yy~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ei~~~~~~~~k~~~~~~~  314 (450)
T 1s6y_A          235 VTMKNIVDLGWEPDFLKGLKVLPCPYHRYYFQTDKMLAEELEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKR  314 (450)
T ss_dssp             --------CCCCHHHHHHHCSBCCGGGHHHHSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTTCC-----------C
T ss_pred             ccccccccCccHHHHHHhcCCccchhhhhhcCCHHHHHhhhccccccchHHHHHHHHHHHHHHHHhhhccccccchhhcc
Confidence                    1221                     22111             34556777777777     3220  0012


Q ss_pred             ccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHH
Q 018314          251 ATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLN  324 (358)
Q Consensus       251 t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~  324 (358)
                      +.+++|.+++++++||++|.+   .+++++. ++|.|   |+|+++|+||+||++|++++..+ +|+++|+++++  +++
T Consensus       315 ~~~~~~~~a~~ii~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~vvg~~Gi~~i~~~-~L~~~e~~l~~~~~~~  390 (450)
T 1s6y_A          315 GGAYYSDAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAVG-DLPVAVRGLVQQIKSF  390 (450)
T ss_dssp             CSCCHHHHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcCCC---eEEEEEeecCceecCCCCCeEEEEeEEEcCCCeEEeecC-CCCHHHHHHHHHHHHH
Confidence            334667999999999999875   4788865 57876   58999999999999999999988 99999999999  777


Q ss_pred             HHHHHHhhhh
Q 018314          325 PTFHIRKLFQ  334 (358)
Q Consensus       325 ~~L~~~~~~~  334 (358)
                      +.|.+|+...
T Consensus       391 e~l~veAa~~  400 (450)
T 1s6y_A          391 ERVAAEAAVT  400 (450)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777766554

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=3.8e-42  Score=341.53  Aligned_cols=281  Identities=13%  Similarity=0.106  Sum_probs=216.5

Q ss_pred             CCceEEEEcCCCChHHHH--HHHHHh--CCC-CcEEEEEecCC-cHHHHHHhhcCC--CCccEEEEecCCccccccCCCC
Q 018314           27 PDRKVAVLGAAGGIGQPL--ALLMKL--NPL-VSRLALYDIAN-TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~--a~~l~~--~~~-~~ei~L~D~~~-~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      +++||+|||| |++ .+.  +..|+.  .++ .+||+|||+++ ....+.|+.+..  ...+++.   ++|++++++|||
T Consensus         1 ~~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~---t~d~~~al~~AD   75 (417)
T 1up7_A            1 RHMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAK   75 (417)
T ss_dssp             CCCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCS
T ss_pred             CCCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEE---eCCHHHHhCCCC
Confidence            3579999998 776 333  335565  566 88999999987 212245554421  1134543   467779999999


Q ss_pred             EEEEcCCCCCCCCCCHH--------------------HHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           99 VVIIPAGVPRKPGMTRD--------------------DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~--------------------~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                      |||+++|.+++++++|.                    .++.+|+++++++++.|+++| |||+|++|||+|++|+++   
T Consensus        76 ~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvdi~t~a~---  151 (417)
T 1up7_A           76 YVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSGHITEFV---  151 (417)
T ss_dssp             EEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHHHHHHHH---
T ss_pred             EEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHHHHHHHH---
Confidence            99999999888777763                    246999999999999999999 999999999999999886   


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe-----------ecCCcccccccccc---cCCC----
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG-----------GHAGITILPLFSQA---TPKA----  220 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~hg~~~~vp~~S~~---~v~~----  220 (358)
                      ++.   .|++||||+|..- .|+++.+|+.+|+++++|+++++|           +||+ +++|.||..   ++++    
T Consensus       152 ~k~---~p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~hG~-d~~p~~~~~~~~~~~~~~~~  226 (417)
T 1up7_A          152 RNY---LEYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVKGE-DVTEKVFENLKLKLSNIPDE  226 (417)
T ss_dssp             HHT---TCCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEETTE-ECHHHHHHHHTTC---CCTT
T ss_pred             HHh---CCCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecCCc-EehhhHHHHHHHhhCCCcCC
Confidence            554   3677999997542 599999999999999999999999           9998 899999985   3322    


Q ss_pred             CCC---------------------HHHHHHH---------HHHHhcCcceEE--------eeccCCCCccchHHHHHHHH
Q 018314          221 NLA---------------------DEDIKAL---------TKRTQDGGTEVV--------EAKAGKGSATLSMAYAGAIF  262 (358)
Q Consensus       221 ~~~---------------------~~~~~~l---------~~~v~~~~~~i~--------~~~~gkg~t~~s~A~a~~~l  262 (358)
                      ++.                     ++.++++         .+++++.+++++        ++ .++|+++|  +.+++++
T Consensus       227 ~~~~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l-~~kg~t~~--~~~a~~i  303 (417)
T 1up7_A          227 DFPTWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEEL-TKRGGSMY--STAAAHL  303 (417)
T ss_dssp             SCCHHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGG-GGSTTTTH--HHHHHHH
T ss_pred             chHHHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhh-hhcCCcHH--HHHHHHH
Confidence            332                     2333444         355666667776        21 24566644  7999999


Q ss_pred             HHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 018314          263 ADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFH  328 (358)
Q Consensus       263 i~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~  328 (358)
                      ++||++|.+   .+++++. ++|.|   |+|+++|+||+||++|++++... +|+++|+++++.++...+
T Consensus       304 i~AI~~d~~---~~~~vsv~n~G~i~~lp~d~~vevP~~vg~~Gi~~i~~~-~L~~~e~~~l~~~~~~e~  369 (417)
T 1up7_A          304 IRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQG-KGDHFALSFIHAVKMYER  369 (417)
T ss_dssp             HHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCCC-CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC---eEEEEEEecCCccCCCCCCeEEEEeEEEeCCceEEeecC-CCCHHHHHHHHHHHHHHH
Confidence            999999865   5788875 57876   58999999999999999999887 999999999995554443

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=1.9e-40  Score=318.05  Aligned_cols=289  Identities=27%  Similarity=0.454  Sum_probs=245.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC---CccEEEEecCCccccccCCCCEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +++|||+|||| |.||++++..|+..++.++|+|+|+++  .++.+.|+.+...   ..++..   ++| ++++++||+|
T Consensus         5 ~~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~-~~~~~~aD~V   79 (319)
T 1lld_A            5 VKPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDG---SDD-PEICRDADMV   79 (319)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEE---ESC-GGGGTTCSEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEe---CCC-HHHhCCCCEE
Confidence            35689999998 999999999999998878999999986  3445677665431   223443   234 4789999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHH
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVV  179 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~  179 (358)
                      |++++.|+++|++|.+++.+|+++++++++.|++++|++++++++||++.++++.   ++.++ +|+++|+|. |.+|+.
T Consensus        80 ii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~~~~~~---~~~~~-~~~~~vig~~~~l~~~  155 (319)
T 1lld_A           80 VITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGSGTNLDSA  155 (319)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEECTTHHHHH
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHHHHHHH---HHhcC-CCHHHEeeccccHhHH
Confidence            9999999999999999999999999999999999999999999999999998875   45566 999999999 899999


Q ss_pred             HHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C------------CCHHHHHHHHHHHhcCcceEEeecc
Q 018314          180 RAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N------------LADEDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~------------~~~~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      |++..+++.+++++.+++.+++|+||+ +++|+|+++.++. +            .+++.++++.+.+++.+.+|++   
T Consensus       156 r~~~~~a~~~~v~~~~v~~~~~G~~g~-~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~---  231 (319)
T 1lld_A          156 RLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIIN---  231 (319)
T ss_dssp             HHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHHhCCCHHHeEEEEEeCCCC-ceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhh---
Confidence            999999999999999999999999998 8999999987642 1            1334478888888888888887   


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLN  324 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~  324 (358)
                      .+|.+.+++|.+.++++++|+++.+   .+++++ +++|.| ..+.++|+||.++++|+++++++ +|+++|+++|++|+
T Consensus       232 ~~G~~~~~~a~~~~sm~~di~~~~~---~ei~~s~~~~G~~~~~~~~~gvp~~~~~~Gv~~i~~~-~l~~~e~~~l~~s~  307 (319)
T 1lld_A          232 GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELAALKRSA  307 (319)
T ss_dssp             SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCC---cEEEEEEEecCcCCccceEEEEEEEEeCCeeEEEcCC-CCCHHHHHHHHHHH
Confidence            4578889999999999999998854   466665 678887 56899999999999999999997 99999999999999


Q ss_pred             HHHHHHh
Q 018314          325 PTFHIRK  331 (358)
Q Consensus       325 ~~L~~~~  331 (358)
                      +.|+...
T Consensus       308 ~~l~~~~  314 (319)
T 1lld_A          308 ETLKETA  314 (319)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998543

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=2.6e-41  Score=340.01  Aligned_cols=290  Identities=15%  Similarity=0.163  Sum_probs=221.2

Q ss_pred             CceEEEEcCCCCh-HHHHHHHHHhC--CC-CcEEEEEecCC--cHHHHHHhhcC-----CCCccEEEEecCCccccccCC
Q 018314           28 DRKVAVLGAAGGI-GQPLALLMKLN--PL-VSRLALYDIAN--TPGVAADVGHI-----NTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~v-G~~~a~~l~~~--~~-~~ei~L~D~~~--~~~~~~dl~~~-----~~~~~v~~~~~~~d~~~al~~   96 (358)
                      ++||+|||| |++ +.+++..|+.+  ++ ..||+|||+++  .++ ..|+.+.     ..+.+++.   ++|++++++|
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~-~~~~~~~~l~~~~~~~~I~~---t~D~~eal~~  102 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDR-IAGACDVFIREKAPDIEFAA---TTDPEEAFTD  102 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHH-HHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCCEEEE---ECCHHHHHcC
Confidence            469999998 888 55567778777  66 78999999987  233 2344332     23556665   3577789999


Q ss_pred             CCEEEEcCCCCCCCCCCH--------------------HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           97 SDVVIIPAGVPRKPGMTR--------------------DDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r--------------------~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      ||+||+++|.++++|++|                    .+++.+|+++++++++.|+++|||||+|++|||+|++|+++ 
T Consensus       103 AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~-  181 (472)
T 1u8x_X          103 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT-  181 (472)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH-
T ss_pred             CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH-
Confidence            999999999987777776                    45589999999999999999999999999999999999886 


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCC-CCCceEEEe-----------e-cCCcccccccccccC--C--
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNV-AEVNVPVVG-----------G-HAGITILPLFSQATP--K--  219 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G-----------~-hg~~~~vp~~S~~~v--~--  219 (358)
                        ++.+   |+.||||+|... .|+++.+|+.+|+++ ++|+++++|           + ||+ +++|.||...+  +  
T Consensus       182 --~k~~---p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~hG~-d~~p~~~~~~~~~g~~  254 (472)
T 1u8x_X          182 --RRLR---PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQEGN-DLMPKLKEHVSQYGYI  254 (472)
T ss_dssp             --HHHS---TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETTCC-BCHHHHHHHHHHHSSC
T ss_pred             --HHhC---CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCCCC-EehHhHHHHHHhcCCC
Confidence              5553   678999998653 599999999999997 999999999           8 998 89999987432  0  


Q ss_pred             ---------CCCCHHHH------------------------HHHHH----------HHhc-CcceEEeecc-C--CC---
Q 018314          220 ---------ANLADEDI------------------------KALTK----------RTQD-GGTEVVEAKA-G--KG---  249 (358)
Q Consensus       220 ---------~~~~~~~~------------------------~~l~~----------~v~~-~~~~i~~~~~-g--kg---  249 (358)
                               .++..+-+                        +++.+          .+++ ...++++... +  ++   
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~Yl~yy~~~~~~~e~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~  334 (472)
T 1u8x_X          255 PKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDDMVKKSNPNHTRANEVMEGREAFIFSQCDMITREQSSE  334 (472)
T ss_dssp             CCC-------CTTSHHHHHHHHHHTSTTSEECGGGHHHHSHHHHHTTSCSSSCHHHHHHHHTTTTTTTTHHHHHHHTSCC
T ss_pred             ccccccccccchHHHHHhhcCccccccccCCccchhcccCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhcCCcc
Confidence                     11110100                        11111          1122 2222222100 2  34   


Q ss_pred             Cccc---hHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH-
Q 018314          250 SATL---SMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE-  321 (358)
Q Consensus       250 ~t~~---s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~-  321 (358)
                      .+.+   ++|.+++++++||++|.+   .+++++. ++|.|   |+|+++|+||+||++|++++... +|+++|+++++ 
T Consensus       335 ~~~~~~~~~~~~a~~ii~AI~~d~~---~v~~vsv~n~G~i~glp~d~~veVP~vvg~~Gi~pi~~~-~Lp~~~~~l~~~  410 (472)
T 1u8x_X          335 NSEIKIDDHASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITVG-TIPQFQKGLMEQ  410 (472)
T ss_dssp             SCSSCCCTTTHHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCCB-CCCHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHhcCCC---eEEEEEeecCceecCcCCCeEEEEeEEEcCCCceEeecC-CCCHHHHHHHHH
Confidence            4445   899999999999999865   5788875 57766   58999999999999999999888 89999999999 


Q ss_pred             -HHHHHHHHHhhhh
Q 018314          322 -KLNPTFHIRKLFQ  334 (358)
Q Consensus       322 -~s~~~L~~~~~~~  334 (358)
                       ++++.|.+|+...
T Consensus       411 ~~~~e~l~veAa~~  424 (472)
T 1u8x_X          411 QVSVEKLTVEAWAE  424 (472)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence             8888888777654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=100.00  E-value=1.1e-32  Score=275.18  Aligned_cols=283  Identities=19%  Similarity=0.224  Sum_probs=199.9

Q ss_pred             CCCceEEEEcCCCChH--HHHHHHHHhCC-CCcEEEEEecCCc--H--HHHHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314           26 VPDRKVAVLGAAGGIG--QPLALLMKLNP-LVSRLALYDIANT--P--GVAADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG--~~~a~~l~~~~-~~~ei~L~D~~~~--~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      .+++||+|||| |++|  ..++..++... +..+|+|||+++.  +  ....+.... .+.+++.   ++|+++|++|||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~-~~~~I~~---TtD~~eAl~dAD   77 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN-GRWRYEA---VSTLKKALSAAD   77 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT-SCEEEEE---ESSHHHHHTTCS
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc-cCCeEEE---ECCHHHHhcCCC
Confidence            35579999998 9985  56677777644 3359999999861  1  112221111 2334543   478889999999


Q ss_pred             EEEEcCC------------CCCCCCCCHH----------HHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           99 VVIIPAG------------VPRKPGMTRD----------DLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        99 iVIi~ag------------~~~~~g~~r~----------~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      +||+++.            +|+|+|+.|.          ....+|+++++++++.|+++||+||+|++|||+|++|+++ 
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~-  156 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVL-  156 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH-
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH-
Confidence            9999984            5889987554          4567999999999999999999999999999999999876 


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHc----C---CCCCCCceEEEe-ecCC---------cccccc-------
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKA----N---VNVAEVNVPVVG-GHAG---------ITILPL-------  212 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l----~---v~~~~v~~~v~G-~hg~---------~~~vp~-------  212 (358)
                        ++.   +|+.||||+|+.. .++++.+|+.+    |   +++++|+..++| +|-.         ++.+|.       
T Consensus       157 --~k~---~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH~~w~~~~~~~G~d~~p~l~~~~~~  230 (450)
T 3fef_A          157 --YKV---FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINHFTWITKASYRHIDLLPIFREFSAH  230 (450)
T ss_dssp             --HHH---CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETTEEEEEEEEETTEEHHHHHHHHHHH
T ss_pred             --HHH---CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecCeEeEEEEEECCEEChHHHHHHHHh
Confidence              554   6889999999764 79999999999    5   779999999999 5532         123331       


Q ss_pred             ------------cccccC--------------C-------------CC--C-----------CH-----HH----HHHHH
Q 018314          213 ------------FSQATP--------------K-------------AN--L-----------AD-----ED----IKALT  231 (358)
Q Consensus       213 ------------~S~~~v--------------~-------------~~--~-----------~~-----~~----~~~l~  231 (358)
                                  |.....              +             .+  |           +.     ++    ++++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~ey~p~~Y~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  310 (450)
T 3fef_A          231 YGESGYELEGECWRDSVFCSAHRVAFDLFETYGAIPAAGDRHLAEFLPGPYLKQPEVWKFHLTPISFRKQDRAEKRQETE  310 (450)
T ss_dssp             HTTTCCCCTTCCTTSCTTCCCSHHHHHHHHHHSSEECSCHHHHTTSSCSSGGGCTTTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhHHHHHHHHHcCCcccccccchhcccchhhcCCHHHhcccccchhhHHHHHHHHHHHHH
Confidence                        100000              0             00  0           00     00    01111


Q ss_pred             HHHhcCcceEEeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEe
Q 018314          232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVL  307 (358)
Q Consensus       232 ~~v~~~~~~i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~  307 (358)
                      +...+  .+-++.   +++     +.+++++++||++|.+   .+++++. ++|.+   |+|+++++||+||++|++++.
T Consensus       311 ~~~~~--~~~~~~---~~~-----~e~~~~ii~aI~~d~~---~~~~vnv~n~G~i~~lp~d~~vevP~~v~~~Gi~pi~  377 (450)
T 3fef_A          311 RLIVQ--QRGVAE---KAS-----GEEGVNIIAALLGLGE---LVTNVNMPNQGQVLNLPIQAIVETNAFITRNRVQPIL  377 (450)
T ss_dssp             HHHHT--TCCCCC---SCC-----SCCHHHHHHHHTTSCC---EEEEEEEECSSSSTTSCTTSEEEEEEEEETTEEEEBC
T ss_pred             HHhcC--CcCcCc---Ccc-----HHHHHHHHHHHHcCCC---eEEEEEeecCcEecCCCCCeEEEEEEEEcCCCceecc
Confidence            11110  111111   111     2457999999999864   5777765 57776   689999999999999999997


Q ss_pred             cCCCCCHHHHHHHH--HHHHHHHHHhhhh
Q 018314          308 GLGPLSDFEQEGLE--KLNPTFHIRKLFQ  334 (358)
Q Consensus       308 ~l~~L~~~E~~~L~--~s~~~L~~~~~~~  334 (358)
                      .. +|+++++++++  ++++.|.+|+...
T Consensus       378 ~g-~Lp~~~~~l~~~~~~~e~l~veAa~~  405 (450)
T 3fef_A          378 SG-ALPKGVEMLAARHISNQEAVADAGLT  405 (450)
T ss_dssp             CC-CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cC-CCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66 89999999998  8888888777655

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.97  E-value=5.6e-31  Score=265.54  Aligned_cols=165  Identities=18%  Similarity=0.195  Sum_probs=129.0

Q ss_pred             ceEEEEcCCCChHHHH--HHHHHhCC----CCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCC
Q 018314           29 RKVAVLGAAGGIGQPL--ALLMKLNP----LVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~--a~~l~~~~----~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (358)
                      |||+|||| |++|++.  ...++..+    ..+||+|+|+++  +++...++.+..    .+.+++.   ++|+++|++|
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~---t~d~~eAl~g   76 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVK---TESLDEAIEG   76 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEE---ESCHHHHHTT
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEE---eCCHHHHhCC
Confidence            69999998 9999775  33455543    347999999987  455555555542    3445554   4688899999


Q ss_pred             CCEEEEcCCC-------------------CCCCCCCHHHHH---------------HHHHHHHHHHHHHHHhhCCCeEEE
Q 018314           97 SDVVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus        97 aDiVIi~ag~-------------------~~~~g~~r~~~~---------------~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                      |||||+++|.                   |+|+|++|.++.               .+|++++.+|++.|+++|||||+|
T Consensus        77 AD~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~i  156 (477)
T 3u95_A           77 ADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLM  156 (477)
T ss_dssp             CSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred             CCEEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEE
Confidence            9999999874                   447777665542               469999999999999999999999


Q ss_pred             EeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC
Q 018314          143 MISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG  206 (358)
Q Consensus       143 v~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~  206 (358)
                      ++|||++++|+++   ++++|    .|++|+|+...  ....+++.+|+++++|+..+.|.|+.
T Consensus       157 n~tNP~~i~t~a~---~~~~~----~k~vGlC~~~~--~~~~~~~~Lg~~~~~v~~~~~GlNH~  211 (477)
T 3u95_A          157 QTANPVFEITQAV---RRWTG----ANIIGFCHGVA--GVYEVFERLGLDPEEVDWQVAGVNHG  211 (477)
T ss_dssp             ECSSCHHHHHHHH---HHHHC----CCEEEECCGGG--HHHHHHHHTTCCGGGEEEEEEEETTE
T ss_pred             EecChHHHHHHHH---HHhCC----CCeEEECCCHH--HHHHHHHHhCCCHHHcEEEEeecCCC
Confidence            9999999999976   67666    69999996433  33457778999999999999997665

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.97  E-value=3.6e-30  Score=258.93  Aligned_cols=289  Identities=17%  Similarity=0.158  Sum_probs=193.6

Q ss_pred             CceEEEEcCCCChHHHH--HHHHHhC-CC-CcEEEEEecCC--cHHHHHHhh-----cCCCCccEEEEecCCccccccCC
Q 018314           28 DRKVAVLGAAGGIGQPL--ALLMKLN-PL-VSRLALYDIAN--TPGVAADVG-----HINTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~--a~~l~~~-~~-~~ei~L~D~~~--~~~~~~dl~-----~~~~~~~v~~~~~~~d~~~al~~   96 (358)
                      ++||+|||| |+||++.  +..|+.. +. ..||+|||+++  .++ +.++.     +...+.+++.   ++|++++++|
T Consensus         3 ~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~-~~~~~~~~l~~~~~~~~I~~---ttD~~eal~d   77 (480)
T 1obb_A            3 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-ILTIAKKYVEEVGADLKFEK---TMNLDDVIID   77 (480)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-HHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHH-HHHHHHHHhccCCCCcEEEE---ECCHHHHhCC
Confidence            579999998 9986555  5677653 33 57999999987  222 22222     2223456665   3677789999


Q ss_pred             CCEEEEcCCC------------CCCCCCCH--HH------------HHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314           97 SDVVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus        97 aDiVIi~ag~------------~~~~g~~r--~~------------~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      ||+||+++|.            |+|+|+.|  .+            ++.+|+++++++++.|+++|||||+|++|||+|+
T Consensus        78 AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi  157 (480)
T 1obb_A           78 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  157 (480)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHH
Confidence            9999999986            55666554  33            5899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCC----------ccccc---------
Q 018314          151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAG----------ITILP---------  211 (358)
Q Consensus       151 ~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~----------~~~vp---------  211 (358)
                      +|+++   ++    +|+.||||+|.++. ++++.+ +.+|+++++|+++++|-++.          ++.+|         
T Consensus       158 ~t~~~---~k----~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH~~w~~~~~~~G~D~~p~l~~~~~~~  228 (480)
T 1obb_A          158 GTTLV---TR----TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNHGIWLNRFRYNGGNAYPLLDKWIEEK  228 (480)
T ss_dssp             HHHHH---HH----HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETTEEEEEEEEETTEECHHHHHHHHHHT
T ss_pred             HHHHH---HH----CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecchhhhhheeeCCeEcHHHHHHHHHcc
Confidence            99876   44    67899999975433 478999 99999999999999992222          11111         


Q ss_pred             --------cccc--ccC--------C---C-------CCC------H------------------HH--------HHHHH
Q 018314          212 --------LFSQ--ATP--------K---A-------NLA------D------------------ED--------IKALT  231 (358)
Q Consensus       212 --------~~S~--~~v--------~---~-------~~~------~------------------~~--------~~~l~  231 (358)
                              .|+.  ..+        +   .       +|-      .                  .+        +++..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~h~~~y~~~~~~~~~~yyy~~~~~~~~~~~~~~~~~~~~~e~~~~~e  308 (480)
T 1obb_A          229 SKDWKPENPFNDQLSPAAIDMYRFYGVMPIGDTVRNSSWRYHRDLETKKKWYGEPWGGADSEIGWKWYQDTLGKVTEITK  308 (480)
T ss_dssp             GGGCCCSSTTCCTTSHHHHHHHHHHSSCEEGGGTTSCCGGGGSSHHHHHHHHCTTTTSTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccccccchhhhHHHHHHHhcCCeecCCCCCCcCcccccccCccccccchhhcccccccccHhHHHHHHHHHHHHH
Confidence                    0221  000        0   0       111      1                  01        01111


Q ss_pred             HHH----hcCcceEEeeccCCCCccc----------------hHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---C
Q 018314          232 KRT----QDGGTEVVEAKAGKGSATL----------------SMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---T  287 (358)
Q Consensus       232 ~~v----~~~~~~i~~~~~gkg~t~~----------------s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~  287 (358)
                      +.+    ++...+....+.-.+.+.|                ..+.+++++++||++|.+   .++.+++ ++|.+   |
T Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ge~a~~ii~ai~~~~~---~~~~vnv~N~G~I~~lp  385 (480)
T 1obb_A          309 KVAKFIKENPSVRLSDLGSVLGKDLSEKQFVLEVEKILDPERKSGEQHIPFIDALLNDNK---ARFVVNIPNKGIIHGID  385 (480)
T ss_dssp             HHHHHHHHCTTCCGGGCSSSSCCSHHHHHHHHHHHHHHCTTCCCSCSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSC
T ss_pred             HHHHHHhcCCccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHhCCC---eEEEEEeeCCceeCCCC
Confidence            111    1111111000000000111                112567999999999865   3555555 45644   8


Q ss_pred             CccEEEEeEEEcCCcEEEEecCCC-CCHHHHHH-HH--HHHHHHHHHhhhh
Q 018314          288 ELPFFASKVRLGKNGVEEVLGLGP-LSDFEQEG-LE--KLNPTFHIRKLFQ  334 (358)
Q Consensus       288 ~d~~~s~Pv~vg~~Gv~~i~~l~~-L~~~E~~~-L~--~s~~~L~~~~~~~  334 (358)
                      +|+++++||+||++|++++... + |++..+++ ++  ++++.|.+|+...
T Consensus       386 ~d~vVEvp~~v~~~G~~p~~~g-~~lP~~~~~l~~~~~~~~e~l~veA~~~  435 (480)
T 1obb_A          386 DDVVVEVPALVDKNGIHPEKIE-PPLPDRVVKYYLRPRIMRMEMALEAFLT  435 (480)
T ss_dssp             TTSEEEEEEEEETTEEEECCCS-SCCCHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEEEEcCCCCEeeccC-CCCCHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999998665 7 99999999 77  8888888776654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.86  E-value=5.7e-09  Score=99.71  Aligned_cols=120  Identities=16%  Similarity=0.190  Sum_probs=86.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH---H---HHhhcCC-C---------CccEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV---A---ADVGHIN-T---------RSEVAGYMGND   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~---~---~dl~~~~-~---------~~~v~~~~~~~   88 (358)
                      ..||+|||| |.||+.+|..++..|+  +|+|+|+++ .  .+.   .   ..+.... .         ..+++.   ++
T Consensus         6 ~~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~---~~   79 (319)
T 3ado_A            6 AGDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS---CT   79 (319)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE---EC
T ss_pred             CCeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc---cc
Confidence            459999998 9999999999999998  999999986 1  111   1   1111111 0         124554   35


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~  167 (358)
                      |+.+++++||+||.++              .+|+++.+++..+|+++++ ++  |+.||...+...-+   ....  -.|
T Consensus        80 ~l~~a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~a--IlaSNTSsl~is~i---a~~~--~~p  138 (319)
T 3ado_A           80 NLAEAVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRV--VLSSSSSCLLPSKL---FTGL--AHV  138 (319)
T ss_dssp             CHHHHTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSS--EEEECCSSCCHHHH---HTTC--TTG
T ss_pred             chHhHhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhcc--eeehhhhhccchhh---hhhc--cCC
Confidence            7778999999999986              5889999999999999995 66  55999998644322   1222  357


Q ss_pred             CceEeec
Q 018314          168 KKLFGVT  174 (358)
Q Consensus       168 ~kviG~t  174 (358)
                      +|++|+.
T Consensus       139 ~r~ig~H  145 (319)
T 3ado_A          139 KQCIVAH  145 (319)
T ss_dssp             GGEEEEE
T ss_pred             CcEEEec
Confidence            8999985

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.76  E-value=5.2e-08  Score=102.80  Aligned_cols=136  Identities=15%  Similarity=0.231  Sum_probs=93.0

Q ss_pred             hhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHH--H-HHh---------hc
Q 018314           10 KTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGV--A-ADV---------GH   74 (358)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~--~-~dl---------~~   74 (358)
                      +..+++...........+..||+|||| |.||+.+|..++..++  +|+|+|+++ .  .+.  . ..+         ..
T Consensus       298 ~k~~~~~~~~~~~~~~~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~  374 (742)
T 3zwc_A          298 NKWSTPSGASWKTASAQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNG  374 (742)
T ss_dssp             TSCBCTTCCBTTTCCCCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccCcccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccc
Confidence            333333333333334455679999998 9999999999999998  999999986 1  111  0 001         11


Q ss_pred             C-CCCccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc-c
Q 018314           75 I-NTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS-T  151 (358)
Q Consensus        75 ~-~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~-~  151 (358)
                      . ....+++..   +| .+++++||+||.+.              .+|+++.+++..+++++++ ++  |+.||...+ +
T Consensus       375 ~~~~~~~~~~~---~~-~~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~a--IlASNTSsl~i  434 (742)
T 3zwc_A          375 QASAKPKLRFS---SS-TKELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGA--FLCTNTSALNV  434 (742)
T ss_dssp             CCCCCCCEEEE---SC-GGGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCH
T ss_pred             hhhhhhhhccc---Cc-HHHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCc--eEEecCCcCCh
Confidence            1 122355542   34 46799999999986              4889999999999999994 66  559999986 4


Q ss_pred             hHHHHHHHHHhCCCCCCceEeec
Q 018314          152 VPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       152 t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      +.++    ..+  -.|+|++|+.
T Consensus       435 ~~ia----~~~--~~p~r~ig~H  451 (742)
T 3zwc_A          435 DDIA----SST--DRPQLVIGTH  451 (742)
T ss_dssp             HHHH----TTS--SCGGGEEEEE
T ss_pred             HHHH----hhc--CCcccccccc
Confidence            4432    222  3578999984

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.57  E-value=6.2e-07  Score=89.59  Aligned_cols=137  Identities=15%  Similarity=0.244  Sum_probs=88.0

Q ss_pred             hhhcccccccccccC-CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH------HHhhcCC-----
Q 018314            9 VKTLAKPAGARGYSS-ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA------ADVGHIN-----   76 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~------~dl~~~~-----   76 (358)
                      ++...-|..++...+ .+.+.+||+|||+ |.||..+|..++..++  +|+++|+++..+..      ..+....     
T Consensus        34 ~~~w~~p~~~~~~~~~~~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~  110 (460)
T 3k6j_A           34 AGQWSLPNDRGDHTNSEAYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDK  110 (460)
T ss_dssp             TTSCBCSTTSCBTTSCCCCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHH
T ss_pred             hccccCCCCccccccCCcccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            333445555543333 3355679999998 9999999999999998  99999998632211      0111111     


Q ss_pred             ----CCccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcc
Q 018314           77 ----TRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST  151 (358)
Q Consensus        77 ----~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~  151 (358)
                          ...+++..   +|+ +++++||+||++.              .++..+.+++...+.+++ |+++  ++||...+-
T Consensus       111 ~~~~~~~~i~~t---~dl-~al~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~aI--lasnTSsl~  170 (460)
T 3k6j_A          111 RIEKINANLKIT---SDF-HKLSNCDLIVESV--------------IEDMKLKKELFANLENICKSTCI--FGTNTSSLD  170 (460)
T ss_dssp             HHHHHHTTEEEE---SCG-GGCTTCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCE--EEECCSSSC
T ss_pred             HHHHHhcceEEe---CCH-HHHccCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCCE--EEecCCChh
Confidence                11356653   455 5899999999986              256778888888999988 4664  367776543


Q ss_pred             -hHHHHHHHHHhCCCCCCceEeec
Q 018314          152 -VPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       152 -t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                       +.+.    ...  -.|.+++|+.
T Consensus       171 i~~ia----~~~--~~p~r~iG~H  188 (460)
T 3k6j_A          171 LNEIS----SVL--RDPSNLVGIH  188 (460)
T ss_dssp             HHHHH----TTS--SSGGGEEEEE
T ss_pred             HHHHH----Hhc--cCCcceEEEE
Confidence             3322    111  1356777774

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.47  E-value=2.2e-06  Score=85.90  Aligned_cols=121  Identities=15%  Similarity=0.225  Sum_probs=77.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--H-HHH--H-H---------hhcCCC-CccEEEEecCCc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--P-GVA--A-D---------VGHINT-RSEVAGYMGNDQ   89 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~-~~~--~-d---------l~~~~~-~~~v~~~~~~~d   89 (358)
                      .+.+||+|||+ |.||..+|..++..++  +|+++|+++.  . +..  . .         +..... ....+.   ++|
T Consensus        35 ~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i---~~~  108 (463)
T 1zcj_A           35 QPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF---SSS  108 (463)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE---ESC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh---cCC
Confidence            35679999998 9999999999999987  9999999761  1 111  0 0         100000 112333   245


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      + +++++||+||++..              .+..+.+++...+.+++ |++++  ++|...+-..-+   ....  -.+.
T Consensus       109 ~-~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~~~~l---a~~~--~~~~  166 (463)
T 1zcj_A          109 T-KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALNVDDI---ASST--DRPQ  166 (463)
T ss_dssp             G-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHH---HTTS--SCGG
T ss_pred             H-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcCHHHH---HHHh--cCCc
Confidence            5 67999999999872              35667777888888887 46643  568877644322   1111  1246


Q ss_pred             ceEeec
Q 018314          169 KLFGVT  174 (358)
Q Consensus       169 kviG~t  174 (358)
                      +++|+.
T Consensus       167 ~~ig~h  172 (463)
T 1zcj_A          167 LVIGTH  172 (463)
T ss_dssp             GEEEEE
T ss_pred             ceEEee
Confidence            777763

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.46  E-value=7e-07  Score=84.10  Aligned_cols=108  Identities=19%  Similarity=0.232  Sum_probs=69.8

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHH-----H---h-hcCCC-------------
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAA-----D---V-GHINT-------------   77 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~-----d---l-~~~~~-------------   77 (358)
                      .+.|+.+++||+|||+ |.||..++..|+..++  +|+++|+++.. ....     .   + .....             
T Consensus         8 ~~~~~~~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~   84 (302)
T 1f0y_A            8 ASAKKIIVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKT   84 (302)
T ss_dssp             ----CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             cccccccCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHH
Confidence            4556666789999998 9999999999999887  99999997621 1110     0   1 11100             


Q ss_pred             CccEEEEecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314           78 RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus        78 ~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                      ..+++..   +|+.+++++||+||++.-              .+..+.+++...+.++. |++++  +||...+
T Consensus        85 ~~~i~~~---~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~i  139 (302)
T 1f0y_A           85 LSTIATS---TDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSSL  139 (302)
T ss_dssp             HHTEEEE---SCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSSS
T ss_pred             HhceEEe---cCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCCC
Confidence            1135542   456668999999999861              33455667777888776 46643  5666554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.41  E-value=1.1e-06  Score=85.17  Aligned_cols=107  Identities=15%  Similarity=0.207  Sum_probs=73.7

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc--------CCCCccEEEEecCCcccccc
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH--------INTRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~--------~~~~~~v~~~~~~~d~~~al   94 (358)
                      .|+..+|||+|||+ |.+|.+++..|+..++  +|.+||+++.......-.+        ...+.++..+   +|+.+++
T Consensus        24 ~m~~~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t---~d~~ea~   97 (356)
T 3k96_A           24 AMEPFKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAY---CDLKASL   97 (356)
T ss_dssp             ---CCCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEE---SCHHHHH
T ss_pred             cccccCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEE---CCHHHHH
Confidence            34455689999998 9999999999999887  8999998752211111111        1122345543   5667889


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcc
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST  151 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~  151 (358)
                      ++||+||++.  |              ...++++++.+..+. |+.+++.++|..+.-
T Consensus        98 ~~aDvVilaV--p--------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A           98 EGVTDILIVV--P--------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             TTCCEEEECC--C--------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTT
T ss_pred             hcCCEEEECC--C--------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcC
Confidence            9999999985  1              125677778888776 578888888876643

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.40  E-value=3.2e-07  Score=85.84  Aligned_cols=120  Identities=19%  Similarity=0.335  Sum_probs=77.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhh--------cC-C--------CCccEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVG--------HI-N--------TRSEVAGYMGND   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~--------~~-~--------~~~~v~~~~~~~   88 (358)
                      ++||+|||+ |.+|+.++..++..++  +|++||+++.  ......+.        .. .        ...++..   ++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~---~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY---SD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE---ES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE---eC
Confidence            469999998 9999999999999998  9999999761  11111110        00 0        0113443   25


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcc-hHHHHHHHHHhCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST-VPIAAEVFKKAGTYN  166 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~-t~~~~~~~~~sg~~~  166 (358)
                      |+.+++++||+||++..              .+.++.+++...+.+++ |++++  ++|...+. +.+.    ...+  .
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~~~~la----~~~~--~  135 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTLLPSDLV----GYTG--R  135 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSCHHHHH----HHHS--C
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----hhcC--C
Confidence            66678999999999862              34567777778888887 46643  55655443 2222    2222  3


Q ss_pred             CCceEeecc
Q 018314          167 EKKLFGVTT  175 (358)
Q Consensus       167 ~~kviG~t~  175 (358)
                      +.+++|+..
T Consensus       136 ~~~~ig~h~  144 (283)
T 4e12_A          136 GDKFLALHF  144 (283)
T ss_dssp             GGGEEEEEE
T ss_pred             CcceEEEcc
Confidence            467888853

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.31  E-value=5.7e-06  Score=83.13  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=76.3

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCc--HHHHHHhhcCCC------------------CccEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT--PGVAADVGHINT------------------RSEVAGY   84 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~--~~~~~dl~~~~~------------------~~~v~~~   84 (358)
                      .++|||+|||+ |.||..+|..|+.. ++. +|++||+++.  .+.+..+.....                  ..+++.+
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~t   93 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECT   93 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEe
Confidence            35689999998 99999999999999 753 8999999874  224444443210                  2345543


Q ss_pred             ecCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHHH
Q 018314           85 MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPIA  155 (358)
Q Consensus        85 ~~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~~  155 (358)
                         +| .+++++||+||++.+.|...+.++    ..++..++..++.|.++. |+.++|.- |-|.+..-.+.
T Consensus        94 ---td-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~  158 (478)
T 3g79_A           94 ---PD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA  158 (478)
T ss_dssp             ---SC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHH
T ss_pred             ---Cc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHH
Confidence               45 578999999999988776543210    122344445555566555 44443322 55665554444

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.28  E-value=2.6e-06  Score=85.75  Aligned_cols=122  Identities=19%  Similarity=0.254  Sum_probs=76.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC---------------CccEEEEecCCccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------------RSEVAGYMGNDQLG   91 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---------------~~~v~~~~~~~d~~   91 (358)
                      ++|||+|||+ |.||..++..|+..+..-+|+++|+++..  +..+.....               ...++.   ++|+.
T Consensus         8 ~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~--v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~---t~~~~   81 (481)
T 2o3j_A            8 KVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAK--IAEWNSDKLPIYEPGLDEIVFAARGRNLFF---SSDIP   81 (481)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHH--HHHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            3579999998 99999999999987433399999987522  222222110               113454   24566


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEe-eCCCCcchHHH
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMI-SNPVNSTVPIA  155 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~-tNP~d~~t~~~  155 (358)
                      +++++||+||++.+.|.+.+.++.+ -..++..+++.++.|.++.+ +.+|+.. |+|.+..-.+.
T Consensus        82 ~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~  146 (481)
T 2o3j_A           82 KAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIG  146 (481)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHH
T ss_pred             HHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHH
Confidence            7889999999998877654322221 11223445566667776664 4444432 78887654443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.26  E-value=4.3e-06  Score=78.83  Aligned_cols=120  Identities=19%  Similarity=0.247  Sum_probs=78.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHH-hhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAAD-VGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~d-l~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..+||+|||+ |.||+.+|..++ .++  +|++||+++. ...+.+ +.+.. ..+++..   +|+. ++++||+||.+.
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~-~~~i~~~---~~~~-~~~~aDlVieav   81 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEEL-LSKIEFT---TTLE-KVKDCDIVMEAV   81 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGG-GGGEEEE---SSCT-TGGGCSEEEECC
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHH-hCCeEEe---CCHH-HHcCCCEEEEcC
Confidence            3579999998 999999999999 888  9999999762 112222 21111 1246643   4554 489999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeecccc
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLD  177 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~ld  177 (358)
                                    .++..+.+.+...++.. |++++  ++|...+-...+   ....  -.+.+++|+..++
T Consensus        82 --------------pe~~~vk~~l~~~l~~~-~~~Il--asntSti~~~~~---a~~~--~~~~r~~G~Hf~~  132 (293)
T 1zej_A           82 --------------FEDLNTKVEVLREVERL-TNAPL--CSNTSVISVDDI---AERL--DSPSRFLGVHWMN  132 (293)
T ss_dssp             --------------CSCHHHHHHHHHHHHTT-CCSCE--EECCSSSCHHHH---HTTS--SCGGGEEEEEECS
T ss_pred             --------------cCCHHHHHHHHHHHhcC-CCCEE--EEECCCcCHHHH---HHHh--hcccceEeEEecC
Confidence                          35567777777778888 88843  567655432211   1111  2355788886554

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.24  E-value=4.5e-06  Score=88.02  Aligned_cols=120  Identities=22%  Similarity=0.378  Sum_probs=79.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHH--HH-h---hcCC---------CCccEEEEecC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVA--AD-V---GHIN---------TRSEVAGYMGN   87 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~--~d-l---~~~~---------~~~~v~~~~~~   87 (358)
                      .+++||+|||+ |.||..+|..++..++  +|++||+++.   .+..  .+ +   ....         ...+++..   
T Consensus       310 ~~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~---  383 (725)
T 2wtb_A          310 RKIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGS---  383 (725)
T ss_dssp             CCCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEE---
T ss_pred             ccCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEe---
Confidence            45679999998 9999999999999998  8999999862   1110  00 1   1000         12356653   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcc-hHHHHHHHHHhCCC
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST-VPIAAEVFKKAGTY  165 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~-t~~~~~~~~~sg~~  165 (358)
                      +|+ +++++||+||++.              ..+..+.+++...+.++++ ++  |++||...+- +.+.    ...  -
T Consensus       384 ~d~-~~~~~aDlVIeaV--------------pe~~~vk~~v~~~l~~~~~~~~--IlasntStl~i~~la----~~~--~  440 (725)
T 2wtb_A          384 LDY-ESFRDVDMVIEAV--------------IENISLKQQIFADLEKYCPQHC--ILASNTSTIDLNKIG----ERT--K  440 (725)
T ss_dssp             SSS-GGGTTCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTC--EEEECCSSSCHHHHT----TTC--S
T ss_pred             CCH-HHHCCCCEEEEcC--------------cCCHHHHHHHHHHHHhhCCCCc--EEEeCCCCCCHHHHH----HHh--c
Confidence            455 6899999999986              2556777888888888885 55  3478887653 3221    111  2


Q ss_pred             CCCceEeec
Q 018314          166 NEKKLFGVT  174 (358)
Q Consensus       166 ~~~kviG~t  174 (358)
                      .+++++|+.
T Consensus       441 ~p~~~iG~h  449 (725)
T 2wtb_A          441 SQDRIVGAH  449 (725)
T ss_dssp             CTTTEEEEE
T ss_pred             CCCCEEEec
Confidence            345777764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.23  E-value=4.7e-06  Score=83.18  Aligned_cols=108  Identities=18%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--C--------------CccEEEEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--T--------------RSEVAGYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~--------------~~~v~~~~~~~d~~~   92 (358)
                      |||+|||+ |.||..++..|+..++  +|++||+++...  ..+....  .              ..+++.+   +|+.+
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v--~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t---~d~~e   74 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKI--EQLNSGTIPIYEPGLEKMIARNVKAGRLRFG---TEIEQ   74 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTCSCCCSTTHHHHHHHHHHTTSEEEE---SCHHH
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHH--HHHHcCCCcccCCCHHHHHHhhcccCcEEEE---CCHHH
Confidence            79999997 9999999999999987  999999986221  1122110  0              1245542   56677


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCc
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNS  150 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~  150 (358)
                      ++++||+||++.+.|.+.+.      ..+...+++.++.|.++. ++.+++.. |.|.+.
T Consensus        75 a~~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           75 AVPEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             HGGGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             HHhcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            89999999999877754432      234455666666676665 44444333 334443

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.21  E-value=6.3e-06  Score=82.95  Aligned_cols=101  Identities=23%  Similarity=0.356  Sum_probs=70.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHH----hhcC---C-C--------CccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAAD----VGHI---N-T--------RSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~d----l~~~---~-~--------~~~v~~~~~~~d   89 (358)
                      .+||+|||+ |.||..+|..++..++  +|++||+++.  ......    +...   . .        ..+++..   +|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~---~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPV---TD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEE---CC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEe---CC
Confidence            569999998 9999999999999997  8999999862  111111    1111   1 0        1245543   45


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcc
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNST  151 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~  151 (358)
                      + +++++||+||++.              ..+..+.+++...+.++++ ++  |++||...+-
T Consensus        79 ~-~~~~~aDlVIeAV--------------pe~~~vk~~v~~~l~~~~~~~~--IlasntSti~  124 (483)
T 3mog_A           79 I-HALAAADLVIEAA--------------SERLEVKKALFAQLAEVCPPQT--LLTTNTSSIS  124 (483)
T ss_dssp             G-GGGGGCSEEEECC--------------CCCHHHHHHHHHHHHHHSCTTC--EEEECCSSSC
T ss_pred             H-HHhcCCCEEEEcC--------------CCcHHHHHHHHHHHHHhhccCc--EEEecCCCCC
Confidence            4 5799999999986              2456777888888888874 55  3367776653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.16  E-value=7.9e-06  Score=81.04  Aligned_cols=108  Identities=19%  Similarity=0.297  Sum_probs=68.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC----------------CccEEEEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~~~   92 (358)
                      |||+|||+ |.||..++..|+..++  +|+++|+++..  +..+.....                ..+++.   ++|+.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~---t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHhCCCCCcCCCCHHHHHHhhcccCceEE---eCCHHH
Confidence            69999997 9999999999999887  89999987522  112222100                113554   246667


Q ss_pred             ccCCCCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhh-CC---CeEEEEe-eCCCCcc
Q 018314           93 ALEDSDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKY-CP---NAIVNMI-SNPVNST  151 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~-~p---~a~iiv~-tNP~d~~  151 (358)
                      ++++||+||++...|... |.       -++..+++.++.|.++ .+   +.+++.. |+|.+..
T Consensus        73 ~~~~aDvviiaVptp~~~~~~-------~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t  130 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNGD-------LDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTV  130 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTSS-------BCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHH
T ss_pred             HhccCCEEEEEcCCCcccCCC-------cchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCch
Confidence            899999999998766532 22       1222333344444443 24   5655544 7888763

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.16  E-value=3.5e-06  Score=82.82  Aligned_cols=113  Identities=17%  Similarity=0.250  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC--------------CccEEEEecCCcccccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~~al   94 (358)
                      |||+|||+ |.||..++..|+. ++  +|+++|+++..  +..+.....              ..++..   ++|+.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~--~~~l~~~~~~i~e~~l~~~~~~~~~~l~~---t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIKA---TLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHH--HHHHHcCCCCcCCCCHHHHHHhccCcEEE---eCCHHHHh
Confidence            69999998 9999999999998 75  89999987522  222222111              113443   24556788


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeCCCCcchHHH
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIA  155 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-~tNP~d~~t~~~  155 (358)
                      ++||+||++...+...+..+.|     +..+.+.++.+.+..|+.+++. .|||.+....+.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~  128 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMR  128 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHH
Confidence            9999999997665322221212     1233444444444456776665 699998866554

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.14  E-value=6.8e-06  Score=77.87  Aligned_cols=156  Identities=15%  Similarity=0.161  Sum_probs=95.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+++||.|+||+|++|++++..|...+.  +|+.+|.....      ....   .+..- .+.+++.++++++|+||++|
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~~~~---~~~~Dl~d~~~~~~~~~~~d~vih~A   85 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------TGGE---EVVGSLEDGQALSDAIMGVSAVLHLG   85 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------SCCS---EEESCTTCHHHHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------CCcc---EEecCcCCHHHHHHHHhCCCEEEECC
Confidence            4677999999999999999999999886  89999987532      1000   11100 01123456788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC--------CC-CcchHHHHHHHHHhCCCCCCceEeecc
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN--------PV-NSTVPIAAEVFKKAGTYNEKKLFGVTT  175 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN--------P~-d~~t~~~~~~~~~sg~~~~~kviG~t~  175 (358)
                      +..........+.+..|+.....+.+.+.+....- +|.+|.        +. ..++.       ..+ .++...+|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~V~~SS~~vyg~~~~~~~~~~E-------~~~-~~~~~~Y~~sK  156 (347)
T 4id9_A           86 AFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRR-FVFASSGEVYPENRPEFLPVTE-------DHP-LCPNSPYGLTK  156 (347)
T ss_dssp             CCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGGGTTTTSCSSSSBCT-------TSC-CCCCSHHHHHH
T ss_pred             cccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEECCHHHhCCCCCCCCCcCC-------CCC-CCCCChHHHHH
Confidence            86543333346788899999999999998876544 444443        11 11211       111 33444555554


Q ss_pred             ccHHHHHHHHHHHcCCCCCCCc-eEEE
Q 018314          176 LDVVRAKTFYAGKANVNVAEVN-VPVV  201 (358)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~  201 (358)
                      ....++-..+++..+++..-++ ..++
T Consensus       157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          157 LLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHhcCCceEEEccceEe
Confidence            4455555566666666655555 3466

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.11  E-value=1.6e-05  Score=71.38  Aligned_cols=110  Identities=16%  Similarity=0.115  Sum_probs=76.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccE-EEEe--cCCccccccCCCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV-AGYM--GNDQLGQALEDSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v-~~~~--~~~d~~~al~~aDiVIi  102 (358)
                      -+.|||.|+||+|++|+.++..|+..+.  +|+++++++....  ++.+..    + +...  -++++.++++++|+||.
T Consensus        19 l~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~--~~~~~~----~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           19 FQGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGP--ELRERG----ASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHH--HHHHTT----CSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHhCC----CceEEEcccHHHHHHHHcCCCEEEE
Confidence            3467999999999999999999999887  9999998763221  121111    1 1111  11345688999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +||....  .+....+..|+.-...+.+.+++.... .+|.+|.
T Consensus        91 ~ag~~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           91 AAGSGPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CCCCCTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCCCCCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            9986532  345667778988889999999887644 4555544

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.11  E-value=5.9e-06  Score=78.28  Aligned_cols=171  Identities=13%  Similarity=0.090  Sum_probs=99.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC----CccccccCC--CCE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALED--SDV   99 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~--aDi   99 (358)
                      .++|||.|+||+|++|+.++..|...+..-+|+..|..........+.......+++...+.    +++.+++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            45689999999999999999999988744488888875421111222222212344443321    223456666  999


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC--------CCcchHHHHHHHHHhCCCCCCc
Q 018314          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP--------VNSTVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus       100 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP--------~d~~t~~~~~~~~~sg~~~~~k  169 (358)
                      ||.+|+.....  .....+.+..|+.....+.+.+.+....- +|.+|..        ...++.       ... ..+..
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~~vy~~~~~~~~~~E-------~~~-~~p~~  172 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIK-LVQVSTDEVYGSLGKTGRFTE-------ETP-LAPNS  172 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSE-EEEEEEGGGGCCCCSSCCBCT-------TSC-CCCCS
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCE-EEEeCchHHhCCCCcCCCcCC-------CCC-CCCCC
Confidence            99999864322  13345678899999999999999886543 4444321        111110       111 23344


Q ss_pred             eEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          170 LFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      .+|.+.....++-..+++..|++..-++ ..++|...
T Consensus       173 ~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  209 (346)
T 4egb_A          173 PYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQ  209 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTC
T ss_pred             hhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCC
Confidence            4555544445555666666777655555 45777543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.03  E-value=2.9e-05  Score=69.18  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=55.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      .++||+|||+ |.+|+.++..|...+.  +|.++|+++.                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            4679999997 9999999999998887  8999997643                           3578999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                     .+.++++.+.+..+.++.+++.++|+.+
T Consensus        67 ---------------~~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 ---------------YPALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             ---------------HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             ---------------cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence                           1112333344433333778888999765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.03  E-value=1.3e-05  Score=79.55  Aligned_cols=115  Identities=19%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC--------------CccEEEEecCCccc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT--------------RSEVAGYMGNDQLG   91 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~--------------~~~v~~~~~~~d~~   91 (358)
                      ..+|||+|||+ |.||..+|..|+. ++  +|++||+++..  +..+.....              ..+++.   ++|+.
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~--v~~l~~g~~~i~e~~l~~ll~~~~~~l~~---ttd~~  104 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAK--VDMLNQKISPIVDKEIQEYLAEKPLNFRA---TTDKH  104 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEEE---ESCHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHH--hhHHhccCCccccccHHHHHhhccCCeEE---EcCHH
Confidence            46789999997 9999999999987 76  99999997621  111222100              124554   35677


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCCCcchHH
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPVNSTVPI  154 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~d~~t~~  154 (358)
                      +++++||+||++...+.......     -+...+++.++.|.+..|+.+++.- |.|.+..-.+
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~-----~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l  163 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNY-----FNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDI  163 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTE-----EECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHH
T ss_pred             HHHhCCCEEEEeCCCcccccccc-----ccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHH
Confidence            89999999999864432211100     1122333333444444566655432 5666554443

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.02  E-value=1.4e-05  Score=80.28  Aligned_cols=102  Identities=13%  Similarity=0.183  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---C-------------CccEEEEecCCcc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---T-------------RSEVAGYMGNDQL   90 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---~-------------~~~v~~~~~~~d~   90 (358)
                      ..|||+|||+ |.||..+|..|+..++  +|++||+++..  +..+....   .             ..+++.   ++|+
T Consensus         7 ~~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~--v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~---ttd~   78 (478)
T 2y0c_A            7 GSMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAK--IDILNNGGVPIHEPGLKEVIARNRSAGRLRF---STDI   78 (478)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ECCH
T ss_pred             CCceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHCCCCCcCCCCHHHHHHHhcccCCEEE---ECCH
Confidence            4689999997 9999999999999988  99999997522  22222211   0             123554   3566


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEE
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVN  142 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~ii  142 (358)
                      .+++++||+||++...|.+.+.+      -+...+++.++.|.++. |+.+++
T Consensus        79 ~~a~~~aDvviiaVptp~~~~~~------~dl~~v~~v~~~i~~~l~~~~iVV  125 (478)
T 2y0c_A           79 EAAVAHGDVQFIAVGTPPDEDGS------ADLQYVLAAARNIGRYMTGFKVIV  125 (478)
T ss_dssp             HHHHHHCSEEEECCCCCBCTTSS------BCCHHHHHHHHHHHHHCCSCEEEE
T ss_pred             HHHhhcCCEEEEEeCCCcccCCC------ccHHHHHHHHHHHHHhcCCCCEEE
Confidence            67899999999998776543221      33445555666666655 455443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=97.99  E-value=1.9e-05  Score=83.22  Aligned_cols=103  Identities=18%  Similarity=0.187  Sum_probs=71.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHH--H----HhhcCCC---------CccEEEEec
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVA--A----DVGHINT---------RSEVAGYMG   86 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~--~----dl~~~~~---------~~~v~~~~~   86 (358)
                      +.+.+||+|||+ |.||+.+|..++..++  +|++||+++.   .+..  .    .+.....         ..+++..  
T Consensus       311 ~~~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~--  385 (715)
T 1wdk_A          311 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT--  385 (715)
T ss_dssp             CCCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE--
T ss_pred             cccCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEE--
Confidence            345679999998 9999999999999998  8999999862   1110  0    0111110         1235543  


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCc
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNS  150 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~  150 (358)
                       +|+ +++++||+||++.              .++..+.+++...+.++++ ++  |++||...+
T Consensus       386 -~d~-~~~~~aDlVIeaV--------------~e~~~vk~~v~~~l~~~~~~~~--IlasntStl  432 (715)
T 1wdk_A          386 -LSY-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA--ILASNTSTI  432 (715)
T ss_dssp             -SSS-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC--EEEECCSSS
T ss_pred             -CCH-HHHCCCCEEEEcC--------------CCCHHHHHHHHHHHHhhCCCCe--EEEeCCCCC
Confidence             455 7899999999986              2456677788888888874 55  337777654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.99  E-value=4.4e-05  Score=75.86  Aligned_cols=130  Identities=16%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             ccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CC
Q 018314           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TR   78 (358)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~   78 (358)
                      |.-++..-.+..+|.+|+|||. |.||..+|..++..++  +|+.+|+++.+  +..|+...                ..
T Consensus         8 ~~~~~~~~p~~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~k--V~~ln~G~~pi~Epgl~ell~~~~~~   82 (444)
T 3vtf_A            8 HHHSSGLVPRGSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSI--VERLRAGRPHIYEPGLEEALGRALSS   82 (444)
T ss_dssp             -----CCCCTTCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHT
T ss_pred             ccccCCcCCCCCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHH--HHHHHCCCCCCCCCCHHHHHHHHHHc
Confidence            3445555555567789999997 9999999999998888  99999998621  12222110                12


Q ss_pred             ccEEEEecCCccccccCCCCEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE-EeeCCCCcchHHH
Q 018314           79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVN-MISNPVNSTVPIA  155 (358)
Q Consensus        79 ~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii-v~tNP~d~~t~~~  155 (358)
                      .+++.   ++|..+++++||++|++.+.|.+.+ ...+.++   ....+.+++.++..++..+|+ =-|-|.+..-.++
T Consensus        83 g~l~~---tt~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v---~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~  155 (444)
T 3vtf_A           83 GRLSF---AESAEEAVAATDATFIAVGTPPAPDGSADLRYV---EAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLV  155 (444)
T ss_dssp             TCEEE---CSSHHHHHHTSSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHH
T ss_pred             CCeeE---EcCHHHHHhcCCceEEEecCCCCCCCCCCcHHH---HHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHH
Confidence            35664   3566788999999999999887553 2222222   245567777777666544333 2477777655443

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.98  E-value=8.1e-05  Score=69.81  Aligned_cols=116  Identities=11%  Similarity=-0.012  Sum_probs=76.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEE-e----cCCccccccCCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGY-M----GNDQLGQALEDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~-~----~~~d~~~al~~aDi   99 (358)
                      +.++|.|+||+|++|++++..|...+.  +|+++|.+....  ....+.+.. ..+++.. .    +..++.+++++.|+
T Consensus        10 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A           10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCE
Confidence            456999999999999999999999886  899999864211  111111100 0133332 1    12344567789999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||++|+.... +.+..+.+..|+.....+.+.+.+......+|.+|.
T Consensus        87 vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           87 VAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            9999986432 234566788999999999998875332345555543

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.97  E-value=3.9e-05  Score=71.58  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=95.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec---CCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~---~~d~~~al~~aDiVIi~a  104 (358)
                      ++||.|+||+|++|+.++..|...+.  +|+.++.++....   +..      ++....   ..++.++++++|+||.+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~------~~~~~~Dl~~~~~~~~~~~~d~Vih~a   70 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---IND------YEYRVSDYTLEDLINQLNDVDAVVHLA   70 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------C------CEEEECCCCHHHHHHHTTTCSEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCc------eEEEEccccHHHHHHhhcCCCEEEEcc
Confidence            36899999999999999999999887  8999998742211   221      111111   123556889999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTF  184 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~  184 (358)
                      +.....  ...+....|+...+.+++.+++.+.+- +|.+|. ..+...--...+.+.....+...+|.+.....++-..
T Consensus        71 ~~~~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~SS-~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~  146 (311)
T 3m2p_A           71 ATRGSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYAST-ISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNI  146 (311)
T ss_dssp             CCCCSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEEE-GGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEcc-HHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Confidence            864432  334566789999999999999877553 443432 1111000000000100022334445544445555556


Q ss_pred             HHHHcCCCCCCCc-eEEEeecC
Q 018314          185 YAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       185 la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      +++..+++..-++ ..++|...
T Consensus       147 ~~~~~g~~~~ilRp~~v~G~~~  168 (311)
T 3m2p_A          147 YSRKKGLCIKNLRFAHLYGFNE  168 (311)
T ss_dssp             HHHHSCCEEEEEEECEEECSCC
T ss_pred             HHHHcCCCEEEEeeCceeCcCC
Confidence            6666676655555 35677543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.97  E-value=4.3e-05  Score=72.52  Aligned_cols=80  Identities=20%  Similarity=0.217  Sum_probs=50.6

Q ss_pred             ccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccc
Q 018314           13 AKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        13 ~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~   92 (358)
                      -+|.|+.-.......++||+|||+ |.+|..++..|+..++  +|++||+++.  ...++....    +...   +++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~--~~~~l~~~g----~~~~---~~~~e   83 (320)
T 4dll_A           16 ENLYFQSMTVESDPYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPA--RAASLAALG----ATIH---EQARA   83 (320)
T ss_dssp             -------------CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CEEE---SSHHH
T ss_pred             cccceechhhccccCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHH--HHHHHHHCC----CEee---CCHHH
Confidence            344444432223345689999998 9999999999999887  8999998752  222333322    3332   45678


Q ss_pred             ccCCCCEEEEcC
Q 018314           93 ALEDSDVVIIPA  104 (358)
Q Consensus        93 al~~aDiVIi~a  104 (358)
                      ++++||+||++.
T Consensus        84 ~~~~aDvVi~~v   95 (320)
T 4dll_A           84 AARDADIVVSML   95 (320)
T ss_dssp             HHTTCSEEEECC
T ss_pred             HHhcCCEEEEEC
Confidence            899999999986

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.96  E-value=1.6e-05  Score=75.02  Aligned_cols=110  Identities=20%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi  102 (358)
                      .+|||.|+||+|++|++++..|...+.  +|+.+|.+....  .++.+.    .++... +   .+++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQI--QRLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCG--GGGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhh--hhhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            457999999999999999999998886  999999875211  112211    122221 1   1234567889999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +|+..........+.+..|+.....+.+.+.+....- +|.+|
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~v~~S  125 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVPR-ILYVG  125 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCSC-EEEEC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEEC
Confidence            9986432223345677889999999999998876433 44444

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=97.95  E-value=6.1e-05  Score=71.25  Aligned_cols=136  Identities=13%  Similarity=0.029  Sum_probs=74.5

Q ss_pred             chhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEE
Q 018314            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVA   82 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~   82 (358)
                      +|+-..-+.-.+|.|-.+..++. +++||.|+||+|++|+.++..|...+.  +|+.+|....... ..+.+.....++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~~   78 (343)
T 2b69_A            3 SSHHHHHHSSGRENLYFQGHMEK-DRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK-RNVEHWIGHENFE   78 (343)
T ss_dssp             -------------------------CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGTGGGTTCTTEE
T ss_pred             ccccccccccccccccccccccc-CCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccch-hhhhhhccCCceE
Confidence            44444444445666666655443 567999999999999999999998886  8999997541000 0111111112344


Q ss_pred             EEecCCccccccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           83 GYMGNDQLGQALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        83 ~~~~~~d~~~al~~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ..... -...++.++|+||.+|+.....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        79 ~~~~D-~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A           79 LINHD-VVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             EEECC-TTSCCCCCCSEEEECCSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EEeCc-cCChhhcCCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            43321 1134678999999999864311  223456678899999999999988764  455554

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=97.94  E-value=2.6e-05  Score=72.59  Aligned_cols=158  Identities=18%  Similarity=0.127  Sum_probs=96.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec---CCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~---~~d~~~al~~aDiVIi~ag  105 (358)
                      |||.|+||+|++|++++..|...+.  +|+.+|.......  +..+    ..++....   ..++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRR--EFVN----PSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCG--GGSC----TTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCch--hhcC----CCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999999887  8999997652110  0111    11222110   1124456677 99999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC------C-cchHHHHHHHHHhCCCCCCceEeeccc
Q 018314          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------N-STVPIAAEVFKKAGTYNEKKLFGVTTL  176 (358)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~------d-~~t~~~~~~~~~sg~~~~~kviG~t~l  176 (358)
                      .+...  .......+..|+.-...+.+.+++....- +|.+|...      + .++       .... .++...+|.+..
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~-iv~~SS~~vyg~~~~~~~~-------e~~~-~~p~~~Y~~sK~  142 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRT-VVFASSSTVYGDADVIPTP-------EEEP-YKPISVYGAAKA  142 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCE-EEEEEEGGGGCSCSSSSBC-------TTSC-CCCCSHHHHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEeCcHHHhCCCCCCCCC-------CCCC-CCCCChHHHHHH
Confidence            64322  23456677889999999999998886543 44443211      0 011       0111 334445555544


Q ss_pred             cHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314          177 DVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       177 ds~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                      ...++-..+++..|++..-++. .++|..
T Consensus       143 ~~e~~~~~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          143 AGEVMCATYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence            4556666667777776555553 677764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=97.90  E-value=0.00012  Score=68.91  Aligned_cols=118  Identities=12%  Similarity=0.045  Sum_probs=74.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCC-CccEEEEe----cCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINT-RSEVAGYM----GNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~-~~~v~~~~----~~~d~~~al~~aDiV  100 (358)
                      ++++|.|+||+|++|++++..|...+.  +|+..+++.. .....++.+... ..+++...    +.+++.++++++|+|
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   81 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGV   81 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEE
Confidence            456899999999999999999999887  8887776542 112222211110 01233322    123455678899999


Q ss_pred             EEcCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          101 IIPAGVPRKPGMTR-DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~g~~r-~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |++|+.......+. .+.+..|+.-...+.+.+.+...-..+|.+|.
T Consensus        82 ih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           82 FHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             EECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            99997542112222 34678899999999998888763234554543

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.90  E-value=6.5e-05  Score=71.15  Aligned_cols=168  Identities=15%  Similarity=0.044  Sum_probs=102.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC---CccEEEEec----CCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT---RSEVAGYMG----NDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~---~~~v~~~~~----~~d~~~al~~a   97 (358)
                      +++||.|+||+|++|++++..|...+.  +|+.+|+..  ......++.....   ..+++...+    .+++.++++++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            467999999999999999999999886  899999865  2223333332110   013333321    12345678899


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC------CC-cchHHHHHHHHHhCCCCCC
Q 018314           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP------VN-STVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP------~d-~~t~~~~~~~~~sg~~~~~  168 (358)
                      |+||.+|+.....  ..+..+.+..|+.....+.+.+.+....- +|.+|..      .+ .++        +.....+.
T Consensus       102 d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~~vyg~~~~~~~~--------E~~~~~p~  172 (351)
T 3ruf_A          102 DHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAASSSTYGDHPALPKV--------EENIGNPL  172 (351)
T ss_dssp             SEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGGGGTTCCCSSBC--------TTCCCCCC
T ss_pred             CEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEecHHhcCCCCCCCCc--------cCCCCCCC
Confidence            9999999853211  12345677889999999999999887554 3433321      11 111        11002233


Q ss_pred             ceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      ..+|.+.....++-..+++..|++..-++. .++|...
T Consensus       173 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~  210 (351)
T 3ruf_A          173 SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQ  210 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTC
T ss_pred             ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCC
Confidence            444555444556666666777877666653 5777543

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.89  E-value=2.6e-05  Score=73.31  Aligned_cols=117  Identities=17%  Similarity=0.063  Sum_probs=75.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEec-CC---ccccccCC-
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYMG-ND---QLGQALED-   96 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~-   96 (358)
                      +++++||.|+||+|++|+.++..|...+.  +|+.+|.+...   ....++..   ...++...+ -.   ++.+++++ 
T Consensus        11 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~   85 (335)
T 1rpn_A           11 GSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIKA   85 (335)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHHH
T ss_pred             cccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHHc
Confidence            35678999999999999999999998886  89999986521   12222211   123433321 11   23345665 


Q ss_pred             -CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           97 -SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        97 -aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       .|+||.+||.....  ..+..+.+..|+.....+.+.+.+......+|.+|.
T Consensus        86 ~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  138 (335)
T 1rpn_A           86 QPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQAST  138 (335)
T ss_dssp             CCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence             59999999864321  234556778899999999999988864345555543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.87  E-value=0.00012  Score=68.21  Aligned_cols=101  Identities=16%  Similarity=0.228  Sum_probs=63.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC-----C----ccEEEEecCCccccccCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT-----R----SEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~-----~----~~v~~~~~~~d~~~al~~aD   98 (358)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++...  ..+.+...     .    .++...+ ..+..++++++|
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d   76 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHI--EAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQVD   76 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCCS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCCC
Confidence            579999998 9999999999999887  999999865211  11211110     0    0111111 112223445999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                      +||++...                ..++++.+.+..+. |+.+++.++|..+.
T Consensus        77 ~vi~~v~~----------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~  113 (316)
T 2ew2_A           77 LIIALTKA----------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH  113 (316)
T ss_dssp             EEEECSCH----------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT
T ss_pred             EEEEEecc----------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc
Confidence            99998621                12456666777665 67888888887764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.87  E-value=7.1e-05  Score=65.76  Aligned_cols=101  Identities=14%  Similarity=0.115  Sum_probs=68.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCcc-ccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL-GQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~-~~al~~aDiVIi~ag~  106 (358)
                      |||.|+||+|++|+.++..|+..+.  +|+++++++....  ++.  .   .++.... -.|. .+++.++|+||.++|.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~--~---~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKIT--QTH--K---DINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHH--HHC--S---SSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhh--hcc--C---CCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            6899999999999999999999986  9999998763222  222  1   1222211 1111 1578999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...       ...|....+.+.+.+++... ..++++|.
T Consensus        72 ~~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           72 SPDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             STTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             Cccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            5422       23578888888888887643 34555544

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.86  E-value=2.4e-05  Score=69.22  Aligned_cols=99  Identities=21%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+||||+|.+|+.++..|...+.  +|+++|+++..  ....++........+..    +++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASITG----MKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEEE----EEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCCh----hhHHHHHhcCCEEEEeCCh
Confidence            5899999559999999999998886  89999987521  11111110000012332    2456778999999998631


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                          +        .    ++++.+.+.+..++.+++.++|+.+
T Consensus        75 ----~--------~----~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           75 ----E--------H----AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ----H--------H----HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ----h--------h----HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence                0        1    2233333333235778888898775

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=97.86  E-value=3.8e-05  Score=72.38  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=76.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEec-C---CccccccCC--CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMG-N---DQLGQALED--SD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~--aD   98 (358)
                      ||||.|+||+|++|+.++..|...+.  +|+++|...   ......++....   ++..... -   .++.+++++  .|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46899999999999999999998886  899999742   222223343211   2332221 1   223456777  99


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +||.+||.....  ..+..+.+..|+.....+.+.+.+....+.+|.+|.
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS  125 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST  125 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecc
Confidence            999999864311  113456678899999999999998876555665553

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=4.3e-05  Score=67.79  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi  102 (358)
                      +++||.|+||+|++|+.++..|...+.  +|+++++++..     +.+..  ..++....    .+++.++++++|+||.
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEK-----IKIEN--EHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGG-----CCCCC--TTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCccc-----chhcc--CceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            367999999999999999999999886  99999987521     11111  23343321    1234567899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++|....    ..+.+..|+...+.+.+.+.+.... .+|.+|
T Consensus        74 ~a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           74 AFNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             eCcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            9975421    1124567888999999999887654 344444

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.85  E-value=2e-05  Score=70.68  Aligned_cols=93  Identities=22%  Similarity=0.292  Sum_probs=62.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEE-EecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLAL-YDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L-~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .++||+|||+ |.+|..++..|...++  ++.+ +|+++.  +..+.++.     .....    ++ .++++++|+||++
T Consensus        22 ~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-----~~~~~----~~-~~~~~~aDvVila   88 (220)
T 4huj_A           22 SMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-----ASVKA----VE-LKDALQADVVILA   88 (220)
T ss_dssp             GSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-----TTEEE----CC-HHHHTTSSEEEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-----CCccc----Ch-HHHHhcCCEEEEe
Confidence            3579999997 9999999999998887  7888 998762  22222221     12221    22 4668999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      .-    +            ..+.++++.+.. .++.+++.++||.+
T Consensus        89 vp----~------------~~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           89 VP----Y------------DSIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             SC----G------------GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             CC----h------------HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            62    1            223344445544 45678888999984

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.85  E-value=4.8e-05  Score=69.37  Aligned_cols=102  Identities=14%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH------------HHHhhcCCCCccEEEEecCCc
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV------------AADVGHINTRSEVAGYMGNDQ   89 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~------------~~dl~~~~~~~~v~~~~~~~d   89 (358)
                      .......+||+|||+ |.+|.+++..|+..++  +|++||+++....            ..++.... . .+..    .+
T Consensus        13 ~~~~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~----~~   83 (245)
T 3dtt_A           13 ENLYFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-P-HVHL----AA   83 (245)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS-T-TCEE----EE
T ss_pred             cccccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-C-ceec----cC
Confidence            333455789999997 9999999999999887  9999998753200            22222211 1 2222    23


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHhhCCCeEEEEeeCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDL-CSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i-~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +.+++++||+||++.-.    .        .-.+.+.++ .+.    -++.++|.++||.
T Consensus        84 ~~e~~~~aDvVilavp~----~--------~~~~~~~~i~~~~----l~g~ivi~~s~~~  127 (245)
T 3dtt_A           84 FADVAAGAELVVNATEG----A--------SSIAALTAAGAEN----LAGKILVDIANPL  127 (245)
T ss_dssp             HHHHHHHCSEEEECSCG----G--------GHHHHHHHHCHHH----HTTSEEEECCCCE
T ss_pred             HHHHHhcCCEEEEccCc----H--------HHHHHHHHhhhhh----cCCCEEEECCCCC
Confidence            46788999999998621    1        112333344 222    2678899999987

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=97.85  E-value=5.3e-05  Score=73.35  Aligned_cols=101  Identities=12%  Similarity=0.167  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-------CCcEEEEEecCCc-----HHHHHHhhcC--------CCCccEEEEecC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP-------LVSRLALYDIANT-----PGVAADVGHI--------NTRSEVAGYMGN   87 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~-------~~~ei~L~D~~~~-----~~~~~dl~~~--------~~~~~v~~~~~~   87 (358)
                      ++||+|||+ |.+|..++..|+..+       .  +|.+||+++.     ......-.+.        ..+..+...   
T Consensus        21 ~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~---   94 (375)
T 1yj8_A           21 PLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAH---   94 (375)
T ss_dssp             CBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEE---
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEE---
Confidence            569999998 999999999998876       4  8999998764     3322211111        011245542   


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh----hC-CCeEEEEeeCCCCc
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK----YC-PNAIVNMISNPVNS  150 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~----~~-p~a~iiv~tNP~d~  150 (358)
                      +|+.+++++||+||++..                ...++++++.+..    +. |+.+++.++|..+.
T Consensus        95 ~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~  146 (375)
T 1yj8_A           95 SDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFIV  146 (375)
T ss_dssp             SSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCEE
T ss_pred             CCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCcccc
Confidence            455677899999999852                1356677777776    44 67888878876543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.85  E-value=6.3e-05  Score=75.21  Aligned_cols=120  Identities=16%  Similarity=0.200  Sum_probs=71.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---------------CCccEEEEecCCccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---------------TRSEVAGYMGNDQLG   91 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---------------~~~~v~~~~~~~d~~   91 (358)
                      ++|||+|||+ |.||..++..|+..+..-+|++||+++...  ..+....               ....++.   ++|+.
T Consensus         4 ~~mkI~VIG~-G~mG~~lA~~La~~g~G~~V~~~d~~~~~~--~~l~~g~~~i~e~~l~~~~~~~~~~~~~~---t~~~~   77 (467)
T 2q3e_A            4 EIKKICCIGA-GYVGGPTCSVIAHMCPEIRVTVVDVNESRI--NAWNSPTLPIYEPGLKEVVESCRGKNLFF---STNID   77 (467)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHH--HHHTSSSCSSCCTTHHHHHHHHBTTTEEE---ESCHH
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHH--HHHhCCCCCcCCCCHHHHHHHhhcCCEEE---ECCHH
Confidence            3579999997 999999999998873223899999875221  2222110               0013444   24566


Q ss_pred             cccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchH
Q 018314           92 QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVP  153 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~  153 (358)
                      +++++||+||++...|........+ -..+...+.+.++.+.++. |+.+++.. |+|.+....
T Consensus        78 e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~  140 (467)
T 2q3e_A           78 DAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAES  140 (467)
T ss_dssp             HHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHH
T ss_pred             HHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHH
Confidence            7889999999998766533211000 0123344555666666654 45544443 677765433

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.85  E-value=3.9e-05  Score=71.57  Aligned_cols=97  Identities=15%  Similarity=0.233  Sum_probs=64.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ++||+|||+ |.+|..++..|...++ ..+|+++|+++..  ..++.+..   .+..+   +|..+++++||+||++.  
T Consensus         3 ~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~--~~~l~~~~---gi~~~---~~~~~~~~~aDvVilav--   71 (280)
T 3tri_A            3 TSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDK--LDFFKEKC---GVHTT---QDNRQGALNADVVVLAV--   71 (280)
T ss_dssp             CSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHH--HHHHHHTT---CCEEE---SCHHHHHSSCSEEEECS--
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHH--HHHHHHHc---CCEEe---CChHHHHhcCCeEEEEe--
Confidence            479999998 9999999999998874 4589999987632  12222211   23332   34567899999999986  


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY--CPNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~--~p~a~iiv~tNP~d  149 (358)
                        ++            ..++++.+.+..+  .++.++|.+++.+.
T Consensus        72 --~p------------~~~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 --KP------------HQIKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             --CG------------GGHHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             --CH------------HHHHHHHHHHHhhccCCCeEEEEecCCCC
Confidence              11            1234455555554  45666766666665

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.84  E-value=1.5e-05  Score=77.91  Aligned_cols=101  Identities=16%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCC------CcEEEEEecCCc---HHHHHHhh--cC--------CCCccEEEEe
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL------VSRLALYDIANT---PGVAADVG--HI--------NTRSEVAGYM   85 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~------~~ei~L~D~~~~---~~~~~dl~--~~--------~~~~~v~~~~   85 (358)
                      ..+|.||+|||| |.-|.++|..|+.++.      ..+|.||..++.   +..+..+.  |.        ..+.++..  
T Consensus        31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~--  107 (391)
T 4fgw_A           31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVA--  107 (391)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEE--
T ss_pred             cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEE--
Confidence            356889999998 9999999999987642      136999987651   22222232  22        13456775  


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEee
Q 018314           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMIS  145 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~t  145 (358)
                       ++|+.+++++||+||++.  |              ...++++++++..+- ++..+|.++
T Consensus       108 -t~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~  151 (391)
T 4fgw_A          108 -NPDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCL  151 (391)
T ss_dssp             -ESCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECC
T ss_pred             -eCCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEec
Confidence             368889999999999974  2              345677788888766 466666554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.83  E-value=9.3e-05  Score=73.69  Aligned_cols=112  Identities=16%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----------------CCccEEEEecCCccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----------------TRSEVAGYMGNDQLG   91 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----------------~~~~v~~~~~~~d~~   91 (358)
                      ..+|+|||+ |.||..+|..|+..++  +|++||+++....  .+....                ...+++.   ++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~--~l~~g~~~~~epgl~~~~~~~~~~g~l~~---ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIE--LLHQNVMPIYEPGLDALVASNVKAGRLSF---TTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHH--HHTTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHhcCCCCccCCCHHHHHHhhcccCCEEE---ECCHH
Confidence            468999997 9999999999999998  9999999873222  222211                0124554   35677


Q ss_pred             cccCCCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-eCCCCcchHH
Q 018314           92 QALEDSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI-SNPVNSTVPI  154 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~-tNP~d~~t~~  154 (358)
                      +++++||+||++.+.|...  |.       -++..+++.++.|.++. ++.++|.- |-|.+..-.+
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~~-------~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l  139 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDGH-------ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEV  139 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTCC-------BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHH
T ss_pred             HHHhcCCEEEEEcCCCCccccCC-------ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHH
Confidence            8999999999998777642  32       23444555555666554 44444433 4444443333

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=97.82  E-value=3.9e-05  Score=70.42  Aligned_cols=148  Identities=14%  Similarity=0.082  Sum_probs=91.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi~  103 (358)
                      +++|.|+||+|++|+.++..|+..+.  +|++.|+++....         ...+.... +   ..++.+++++.|+||++
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~   71 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVAGCDGIVHL   71 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHcCCCEEEEC
Confidence            45799999999999999999998886  8999998762111         11233221 1   12345678899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc----hHHHHHHHHHhCCCCCCceEeeccccHH
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST----VPIAAEVFKKAGTYNEKKLFGVTTLDVV  179 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~----t~~~~~~~~~sg~~~~~kviG~t~lds~  179 (358)
                      ||...  .....+.+..|+.-...+.+.+.+.... .||++|.-...-    ....   ....+ .++...+|.+.....
T Consensus        72 Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~---~e~~~-~~~~~~Y~~sK~~~e  144 (267)
T 3rft_A           72 GGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERL---GPDVP-ARPDGLYGVSKCFGE  144 (267)
T ss_dssp             CSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCB---CTTSC-CCCCSHHHHHHHHHH
T ss_pred             CCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCC---CCCCC-CCCCChHHHHHHHHH
Confidence            98742  2344667889999999999999887644 445444321100    0000   00111 334445555544445


Q ss_pred             HHHHHHHHHcCCCC
Q 018314          180 RAKTFYAGKANVNV  193 (358)
Q Consensus       180 R~~~~la~~l~v~~  193 (358)
                      .+-+.+++.++++.
T Consensus       145 ~~~~~~a~~~g~~~  158 (267)
T 3rft_A          145 NLARMYFDKFGQET  158 (267)
T ss_dssp             HHHHHHHHHHCCCE
T ss_pred             HHHHHHHHHhCCeE
Confidence            56666777777653

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=97.81  E-value=4.7e-05  Score=71.57  Aligned_cols=169  Identities=13%  Similarity=0.027  Sum_probs=97.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CC---ccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~aDiVIi~  103 (358)
                      .|||.|+||+|++|++++..|...+...+|+..|..........+.+.....++..... -.   ++.+++.++|+||++
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            46899999999999999998888763238999997531100011211111123443321 12   233556789999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-------CcchHHHHHHHHHhCCCCCCceEeec
Q 018314          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       104 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-------d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ||.....  ..+..+.+..|+.....+++.+.+......+|.+|...       ..++       ...+ .++...+|.+
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~-------E~~~-~~~~~~Y~~s  154 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT-------ENDR-LMPSSPYSAT  154 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC-------TTBC-CCCCSHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC-------CCCC-CCCCCccHHH
Confidence            9864311  11234577889999999999999885444566555311       0111       0111 3334444554


Q ss_pred             cccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      .....++-..+++.++++..-++ ..++|..
T Consensus       155 K~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          155 KAASDMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            44445555566666676544444 3466654

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.81  E-value=4.6e-05  Score=72.85  Aligned_cols=102  Identities=21%  Similarity=0.309  Sum_probs=67.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCCc-----HHHHHHhhcCC--------CCccEEEEecCCc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANT-----PGVAADVGHIN--------TRSEVAGYMGNDQ   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~-----~~~~~dl~~~~--------~~~~v~~~~~~~d   89 (358)
                      +|||+|||+ |.+|..++..|+..+.     ..+|.+||+++.     ......-.+..        .+..+...   +|
T Consensus         8 ~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~   83 (354)
T 1x0v_A            8 SKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAV---PD   83 (354)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEE---SS
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEE---cC
Confidence            469999998 9999999999988761     028999998764     33332211110        11234542   45


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCC
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d  149 (358)
                      +.+++++||+||++.-.                ..++++.+.+..+. |+.+++.++|..+
T Consensus        84 ~~~~~~~aD~Vilav~~----------------~~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           84 VVQAAEDADILIFVVPH----------------QFIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHHTTCSEEEECCCG----------------GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHHcCCCEEEEeCCH----------------HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence            56778999999998621                12455666676655 6778888888554

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.80  E-value=6.1e-05  Score=66.54  Aligned_cols=102  Identities=23%  Similarity=0.190  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCcc-ccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQL-GQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~-~~al~~aDiVIi~ag~  106 (358)
                      |||.|+||+|++|+.++..|+..+.  +|+++++++..  ..++...    .++.... -.|. .+++.++|+||.++|.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~--~~~~~~~----~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQK--AADRLGA----TVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHTCT----TSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccc--cccccCC----CceEEecccccccHhhcccCCEEEECCcc
Confidence            6899999999999999999999887  99999986522  1222211    2222211 1111 1578999999999987


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...+..     ...|....+.+.+.+++..  ..+|++|
T Consensus        73 ~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           73 PWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             CCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            532222     2468888899998888776  4555554

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=97.80  E-value=5.6e-05  Score=71.03  Aligned_cols=116  Identities=15%  Similarity=0.007  Sum_probs=74.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCC--CCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALED--SDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~--aDiVI  101 (358)
                      .++|.|+||+|++|++++..|+..+.  +|+++|.+........+.+.....+++.... -   +++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999886  9999998752111011111111123433221 1   123345554  59999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++||.....  ..+....+..|+.-...+.+.+.+......+|.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999864311  23455677889988999999888775434555554

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=97.80  E-value=0.0001  Score=69.31  Aligned_cols=113  Identities=12%  Similarity=0.083  Sum_probs=70.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (358)
                      ++||.|+||+|++|++++..|...+.  +|+..+.+..    .....++...   .+++...    +..++.++++++|+
T Consensus         9 ~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~~D~   83 (338)
T 2rh8_A            9 KKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAGCDF   83 (338)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTTCSE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcCCCE
Confidence            46899999999999999999999887  8887766531    1111223211   1233322    12344567889999


Q ss_pred             EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       100 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ||++|+.......+ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        84 Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~S  130 (338)
T 2rh8_A           84 VFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTS  130 (338)
T ss_dssp             EEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             EEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEe
Confidence            99998753211111 22367889999999999888764223455444

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=97.80  E-value=7.5e-05  Score=71.06  Aligned_cols=112  Identities=15%  Similarity=0.074  Sum_probs=72.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-----CCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-----DSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-----~aDiV  100 (358)
                      +.++|.|+||+|++|++++..|...+ .  +|+++|..........+.....  ..... ..+.+.++++     ++|+|
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~--~~d~~-~~~~~~~~~~~~~~~~~d~V  119 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNI--ADYMD-KEDFLIQIMAGEEFGDVEAI  119 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCC--SEEEE-HHHHHHHHHTTCCCSSCCEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceE--eeecC-cHHHHHHHHhhcccCCCCEE
Confidence            34789999999999999999999887 5  8999997652211111221111  11111 1122334455     59999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |.+||.......+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus       120 ih~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          120 FHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             EECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             EECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            9999865433345667788999999999999988765  444444

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=97.79  E-value=0.00013  Score=70.36  Aligned_cols=113  Identities=14%  Similarity=-0.030  Sum_probs=76.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccCCCCE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALEDSDV   99 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~aDi   99 (358)
                      +..++|||.|+||+|++|++++..|...+.  +|+++|.+.....  .+..    ..++... +-   .++.++++++|+
T Consensus        25 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~----~~v~~~~~Dl~d~~~~~~~~~~~d~   96 (379)
T 2c5a_A           25 WPSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHM--TEDM----FCDEFHLVDLRVMENCLKVTEGVDH   96 (379)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSS--CGGG----TCSEEEECCTTSHHHHHHHHTTCSE
T ss_pred             ccccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccch--hhcc----CCceEEECCCCCHHHHHHHhCCCCE
Confidence            344678999999999999999999998886  8999998652111  0111    1122221 11   234567889999


Q ss_pred             EEEcCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          100 VIIPAGVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       100 VIi~ag~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ||++|+.....   .....+.+..|+.....+.+.+.+....- +|.+|
T Consensus        97 Vih~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-~V~~S  144 (379)
T 2c5a_A           97 VFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYAS  144 (379)
T ss_dssp             EEECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEE
T ss_pred             EEECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEe
Confidence            99999864321   23456678889999999999998775443 44444

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.79  E-value=0.00011  Score=65.19  Aligned_cols=100  Identities=21%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CCce-EEEEcCCCChHHHHHHHHH-hCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEE
Q 018314           27 PDRK-VAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~K-I~IiGA~G~vG~~~a~~l~-~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV  100 (358)
                      .||| |.|+||+|++|+.++..|+ ..+.  +|+++++++.. ...++....  ..+.....    .+++.++++++|+|
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~-~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~d~v   77 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKT-RIPPEIIDH--ERVTVIEGSFQNPGXLEQAVTNAEVV   77 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHH-HSCHHHHTS--TTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccc-cchhhccCC--CceEEEECCCCCHHHHHHHHcCCCEE
Confidence            3455 9999999999999999999 7887  89999986420 112221111  13333321    12345678999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |.++|..             |.. .+.+.+.+++.... .+|++|.
T Consensus        78 v~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iSs  108 (221)
T 3r6d_A           78 FVGAMES-------------GSD-MASIVKALSRXNIR-RVIGVSM  108 (221)
T ss_dssp             EESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEEE
T ss_pred             EEcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEee
Confidence            9999753             444 78888888876644 3454443

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=97.78  E-value=3e-05  Score=72.40  Aligned_cols=165  Identities=15%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEec---CCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~---~~d~~~al~~aDiVIi~  103 (358)
                      |+||.|+||+|++|+.++..|...+   .++.++... ....  .+.     ..+.....   ..++.++++++|+||.+
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g---~~v~~~~~~~~~~~--~~~-----~~~~~~~~Dl~~~~~~~~~~~~d~vih~   70 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN---EIVVIDNLSSGNEE--FVN-----EAARLVKADLAADDIKDYLKGAEEVWHI   70 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS---CEEEECCCSSCCGG--GSC-----TTEEEECCCTTTSCCHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC---CEEEEEcCCCCChh--hcC-----CCcEEEECcCChHHHHHHhcCCCEEEEC
Confidence            4689999999999999999999887   344555433 1100  010     12222210   13455678899999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHH-HHhCCCCCCceEeeccccHHH
Q 018314          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF-KKAGTYNEKKLFGVTTLDVVR  180 (358)
Q Consensus       104 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~-~~sg~~~~~kviG~t~lds~R  180 (358)
                      |+.+...  .....+.+..|+.....+++.+.+.... .+|.+|.-. +...--.... ...+ .++...+|.+.....+
T Consensus        71 a~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~-vyg~~~~~~~~E~~~-~~~~~~Y~~sK~~~e~  147 (313)
T 3ehe_A           71 AANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTST-VYGEAKVIPTPEDYP-THPISLYGASKLACEA  147 (313)
T ss_dssp             CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGG-GGCSCSSSSBCTTSC-CCCCSHHHHHHHHHHH
T ss_pred             CCCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchH-HhCcCCCCCCCCCCC-CCCCCHHHHHHHHHHH
Confidence            9865322  2445677889999999999999887644 445444311 1000000000 0011 2333445555444555


Q ss_pred             HHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          181 AKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      +-..+++..|++..-++ ..++|...
T Consensus       148 ~~~~~~~~~g~~~~ilRp~~v~G~~~  173 (313)
T 3ehe_A          148 LIESYCHTFDMQAWIYRFANVIGRRS  173 (313)
T ss_dssp             HHHHHHHHTTCEEEEEECSCEESTTC
T ss_pred             HHHHHHHhcCCCEEEEeeccccCcCC
Confidence            66666777776554444 35777543

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=97.78  E-value=7.1e-05  Score=70.46  Aligned_cols=167  Identities=13%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCC---cEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCCCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLV---SRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~---~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiV  100 (358)
                      |||.|+||+|++|++++..|... +..   .+|+.+|..........+.......++....+ -   .++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            58999999999999999999885 222   38999997531100011111111123443321 1   2234567899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-------CcchHHHHHHHHHhCCCCCCceE
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLF  171 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-------d~~t~~~~~~~~~sg~~~~~kvi  171 (358)
                      |++||.....  ..+..+.+..|+.....+.+.+.+.... .+|.+|...       ..++.       ..+ .++...+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E-------~~~-~~~~~~Y  151 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSGSWTE-------SSP-LEPNSPY  151 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSSCBCT-------TSC-CCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCCCCCC-------CCC-CCCCCch
Confidence            9999864311  0123456788999999999998887543 444444211       01110       111 2333444


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      |.+.....++-..+++..+++..-++ ..++|..
T Consensus       152 ~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            44444444555555666676655555 3567754

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=97.77  E-value=0.0002  Score=68.31  Aligned_cols=119  Identities=14%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHh--CCCCcEEEEEecCCc-H-HHHHHh---hcC--CCCccEEEEe-cCC---cc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKL--NPLVSRLALYDIANT-P-GVAADV---GHI--NTRSEVAGYM-GND---QL   90 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~--~~~~~ei~L~D~~~~-~-~~~~dl---~~~--~~~~~v~~~~-~~~---d~   90 (358)
                      +..++++|.|+||+|++|++++..|+.  .+.  +|+++|.... . ......   ...  .....+.... +-.   ++
T Consensus         6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~   83 (362)
T 3sxp_A            6 DELENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDL   83 (362)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHH
T ss_pred             hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHH
Confidence            345678999999999999999999998  676  9999997542 0 000000   000  0011223222 111   23


Q ss_pred             ccc-cCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           91 GQA-LEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        91 ~~a-l~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .++ ..++|+||.+||..........+.+..|+.....+.+.+++....  +|.+|.
T Consensus        84 ~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~SS  138 (362)
T 3sxp_A           84 RRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYASS  138 (362)
T ss_dssp             HHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEEE
T ss_pred             HHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeCc
Confidence            334 689999999998654334556778899999999999999887644  444443

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.77  E-value=7.8e-05  Score=68.36  Aligned_cols=94  Identities=15%  Similarity=0.233  Sum_probs=62.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcE-EEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +|||+|||+ |.+|..++..|...++  + +.++|+++...  .++....   .+..+   +++.++++++|+||++.. 
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~--~~v~~~~~~~~~~--~~~~~~~---g~~~~---~~~~~~~~~~Dvvi~av~-   77 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF--RIVQVYSRTEESA--RELAQKV---EAEYT---TDLAEVNPYAKLYIVSLK-   77 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSSHHHH--HHHHHHT---TCEEE---SCGGGSCSCCSEEEECCC-
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHH--HHHHHHc---CCcee---CCHHHHhcCCCEEEEecC-
Confidence            579999998 9999999999888775  5 89999865221  1222211   12322   345677899999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                                   .+  ..+++.+.+.+.. ++.+++..++-.
T Consensus        78 -------------~~--~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           78 -------------DS--AFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             -------------HH--HHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             -------------HH--HHHHHHHHHHhhcCCCcEEEECCCCC
Confidence                         11  1356666776665 677777666644

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.75  E-value=0.00017  Score=68.42  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=49.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCcccc-ccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQ-ALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~-al~~aDiVIi~a  104 (358)
                      ..+||+|||+ |.+|..++..|...++..+|++||+++. ...+.++   ...  ....   +|+.+ ++++||+||++.
T Consensus        32 ~~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~---G~~--~~~~---~~~~~~~~~~aDvVilav  102 (314)
T 3ggo_A           32 SMQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL---GII--DEGT---TSIAKVEDFSPDFVMLSS  102 (314)
T ss_dssp             SCSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT---TSC--SEEE---SCTTGGGGGCCSEEEECS
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC---CCc--chhc---CCHHHHhhccCCEEEEeC
Confidence            3579999997 9999999999999887669999998752 2222222   110  1221   34566 799999999986

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.73  E-value=0.00015  Score=68.68  Aligned_cols=119  Identities=13%  Similarity=0.168  Sum_probs=72.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHH---hhcCCCC-c---cEEEEecCCccccccCCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAAD---VGHINTR-S---EVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~d---l~~~~~~-~---~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      |||+|||+ |.+|..++..|+..+.  +|.++|+++.+....+   +...... .   .+..+   +|+.++.+++|+||
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~~~i~~~Gl~~~~~~~g~~~~~~~~~~---~~~~~~~~~~DlVi   76 (320)
T 3i83_A            3 LNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDYETVKAKGIRIRSATLGDYTFRPAAVV---RSAAELETKPDCTL   76 (320)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTHHHHHHHCEEEEETTTCCEEECCSCEE---SCGGGCSSCCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChHHHHHhCCcEEeecCCCcEEEeeeeeE---CCHHHcCCCCCEEE
Confidence            79999998 9999999999999886  9999998752111111   1110110 0   12222   34445445999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccc
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTL  176 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~l  176 (358)
                      ++.-    +...            .++.+.+..+- ++..++.+.|-.+....+.    +.   +|.++|++- +..
T Consensus        77 lavK----~~~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~----~~---~~~~~vl~g~~~~  130 (320)
T 3i83_A           77 LCIK----VVEG------------ADRVGLLRDAVAPDTGIVLISNGIDIEPEVA----AA---FPDNEVISGLAFI  130 (320)
T ss_dssp             ECCC----CCTT------------CCHHHHHTTSCCTTCEEEEECSSSSCSHHHH----HH---STTSCEEEEEEEE
T ss_pred             EecC----CCCh------------HHHHHHHHhhcCCCCEEEEeCCCCChHHHHH----HH---CCCCcEEEEEEEe
Confidence            9862    2211            12234444443 6788888999988664332    32   666677754 443

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=97.73  E-value=4.9e-05  Score=72.20  Aligned_cols=166  Identities=14%  Similarity=0.072  Sum_probs=94.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CC---ccccccC--CCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALE--DSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~--~aDiVI  101 (358)
                      |||.|+||+|++|++++..|+.. +.  +|++.|..........+.+.....++....+ -.   ++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999988886 55  8999997531000011111111123443321 12   2334555  899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhh--CCC------eEEEEeeCCC--C---------------cchHH
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY--CPN------AIVNMISNPV--N---------------STVPI  154 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~--~p~------a~iiv~tNP~--d---------------~~t~~  154 (358)
                      ++||.....  .....+.+..|+.-...+++.+.+.  .-+      +.+|.+|...  +               .++  
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~--  156 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFT--  156 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBC--
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCC--
Confidence            999864311  1123456788888888888888877  433      3556554311  0               111  


Q ss_pred             HHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       155 ~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                           ...+ .++...+|.+.....++-..+++.+|++..-++ ..++|..
T Consensus       157 -----E~~~-~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          157 -----ETTA-YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             -----TTSC-CCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             -----CCCC-CCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence                 0111 233444455444445555566666677655555 3566754

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.72  E-value=0.00011  Score=68.27  Aligned_cols=96  Identities=16%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ++||+|||+ |.+|..++..|...+...+|+++|+++....  .+...... . ..+   +|+.+++++||+||++... 
T Consensus         6 ~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~~-~-~~~---~~~~~~~~~aDvVilavp~-   76 (290)
T 3b1f_A            6 EKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSRD--IALERGIV-D-EAT---ADFKVFAALADVIILAVPI-   76 (290)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHHH--HHHHTTSC-S-EEE---SCTTTTGGGCSEEEECSCH-
T ss_pred             cceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHH--HHHHcCCc-c-ccc---CCHHHhhcCCCEEEEcCCH-
Confidence            579999997 9999999999887753348999998752211  22221111 1 221   3455678999999998621 


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhh-C-CCeEEEEeeCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKY-C-PNAIVNMISNP  147 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~-p~a~iiv~tNP  147 (358)
                                     ...+++.+.+..+ . ++.+++.++|.
T Consensus        77 ---------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           77 ---------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ---------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ---------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                           1125566667665 3 66666655553

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.70  E-value=0.00015  Score=68.63  Aligned_cols=112  Identities=15%  Similarity=0.183  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---------CCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---------TRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---------~~~~v~~~~~~~d~~~al~~a   97 (358)
                      .++||+|||+ |.+|..++..|+..+.  +|.++ .++...  ..+....         .+..+..   ++|+ ++++++
T Consensus        18 ~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~--~~i~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~   87 (318)
T 3hwr_A           18 QGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHV--QAIEATGLRLETQSFDEQVKVSA---SSDP-SAVQGA   87 (318)
T ss_dssp             --CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHH--HHHHHHCEEEECSSCEEEECCEE---ESCG-GGGTTC
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHH--HHHHhCCeEEEcCCCcEEEeeee---eCCH-HHcCCC
Confidence            4679999998 9999999999999887  89999 654211  1121110         0112232   2344 457899


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |+||++.-.    .            -++++.+.+..+. |+.+++.++|..+....+.    +.   +| +++++
T Consensus        88 D~vilavk~----~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~----~~---~~-~~vl~  139 (318)
T 3hwr_A           88 DLVLFCVKS----T------------DTQSAALAMKPALAKSALVLSLQNGVENADTLR----SL---LE-QEVAA  139 (318)
T ss_dssp             SEEEECCCG----G------------GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHH----HH---CC-SEEEE
T ss_pred             CEEEEEccc----c------------cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHH----HH---cC-CcEEE
Confidence            999998621    1            1355566676654 6788888999998754332    22   66 67774

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=97.70  E-value=0.0002  Score=72.19  Aligned_cols=104  Identities=16%  Similarity=0.117  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      +|||.|+||+|++|+.++..|...+.  +|+.++.+....     .      .+... ..+...++++++|+||.+|+..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~-----~------~v~~d-~~~~~~~~l~~~D~Vih~A~~~  212 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKP-----G------KRFWD-PLNPASDLLDGADVLVHLAGEP  212 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCT-----T------CEECC-TTSCCTTTTTTCSEEEECCCC-
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCc-----c------ceeec-ccchhHHhcCCCCEEEECCCCc
Confidence            78999999999999999999999887  999999875211     0      11110 0122346789999999999864


Q ss_pred             CCC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          108 RKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       108 ~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...   .....+.+..|+...+.+++.+.+...-..+|.+|
T Consensus       213 ~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          213 IFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             ----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            321   22345677889999999999854443223445444

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.70  E-value=0.00012  Score=68.16  Aligned_cols=64  Identities=11%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.||..++..|...++  +|++||+++....  ++.+.    .+..   .+++.+++++||+||++.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~----g~~~---~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAE--ELAAL----GAER---AATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHC----CCee---cCCHHHHHhcCCEEEEEc
Confidence            69999997 9999999999999987  9999999763221  12221    1232   245678889999999986

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=97.69  E-value=0.00013  Score=63.83  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=72.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVIi~  103 (358)
                      ++||.|+||+|.+|+.++..|...+...+|+++++++..      .+    .+++...    +.+++.+++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~----~~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EH----PRLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CC----TTEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cC----CCceEEeccccCHHHHHHhh--hcEEEEC
Confidence            468999999999999999999998865589999987532      01    1222211    112333444  8999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +|.......+..+....|......+++.+.+.... .+|.+|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98643222345667788999999999998877544 3454443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.69  E-value=8.1e-05  Score=69.89  Aligned_cols=68  Identities=16%  Similarity=0.051  Sum_probs=48.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+++||+|||+ |.+|..++..|+..++  +|++||+++..  ...+.....  .. ..   +++.+++++||+||++.
T Consensus         5 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~--~~~~~~~g~--~~-~~---~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            5 GTDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQA--CANLLAEGA--CG-AA---ASAREFAGVVDALVILV   72 (303)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHHTTC--SE-EE---SSSTTTTTTCSEEEECC
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHcCC--cc-cc---CCHHHHHhcCCEEEEEC
Confidence            34679999997 9999999999999987  99999987522  222332221  11 11   34567889999999986

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.68  E-value=0.00014  Score=68.34  Aligned_cols=115  Identities=15%  Similarity=0.096  Sum_probs=74.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-c---CCccccccC--CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQALE--DSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~--~aD   98 (358)
                      .+++|.|+||+|++|++++..|+..+.  +|++.|.+.  ......++.... ...+.... +   ..++.++++  +.|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPIT   80 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCC
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCc
Confidence            456999999999999999999999987  899999865  222222222110 01222221 1   123344555  899


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +||++||.....  .....+.+..|+.....+.+.+++..... +|++|
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-iv~~S  128 (341)
T 3enk_A           81 AAIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKR-IVFSS  128 (341)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             EEEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCE-EEEEe
Confidence            999999864311  12234667889999999999998876544 44443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.68  E-value=0.00011  Score=69.21  Aligned_cols=67  Identities=10%  Similarity=0.172  Sum_probs=50.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+++||+|||+ |.||..++..|+..++  +|++||+++....  ++.+..    +..   .+++.+++++||+||++.
T Consensus        19 ~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           19 SHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCD--ELVEHG----ASV---CESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             ccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----CeE---cCCHHHHHHhCCEEEEEc
Confidence            45789999997 9999999999999987  9999999763222  122211    222   245678899999999985

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.68  E-value=8.3e-05  Score=70.80  Aligned_cols=96  Identities=16%  Similarity=0.221  Sum_probs=62.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC---CCc----cEEEEecCCccccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN---TRS----EVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~---~~~----~v~~~~~~~d~~~al~~aDiV  100 (358)
                      ++||+|||+ |.+|..++..|+..++  +|.+||+++...  ..+....   ..+    .+...   +|+.+ ++++|+|
T Consensus        14 ~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~--~~l~~~g~~~~~~~~~~~~~~~---~~~~~-~~~aDvV   84 (335)
T 1z82_A           14 EMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIV--DLINVSHTSPYVEESKITVRAT---NDLEE-IKKEDIL   84 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHH--HHHHHHSCBTTBTTCCCCSEEE---SCGGG-CCTTEEE
T ss_pred             CCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHH--HHHHHhCCcccCCCCeeeEEEe---CCHHH-hcCCCEE
Confidence            589999998 9999999999999887  999999864222  2222111   000    23332   34556 8999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      |++..    +            ..+++++..+..  ++..+|.++|..+.
T Consensus        85 il~vk----~------------~~~~~v~~~l~~--~~~~vv~~~nGi~~  116 (335)
T 1z82_A           85 VIAIP----V------------QYIREHLLRLPV--KPSMVLNLSKGIEI  116 (335)
T ss_dssp             EECSC----G------------GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred             EEECC----H------------HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence            99852    1            123333333443  67788888987653

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.68  E-value=5.8e-05  Score=68.95  Aligned_cols=91  Identities=15%  Similarity=0.270  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC--cEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLV--SRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~--~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +|||+|||+ |.+|..++..|...+..  .+|.+||+++..       .     .+..   .+++.++++++|+||++..
T Consensus         4 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~v~   67 (262)
T 2rcy_A            4 NIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCAVK   67 (262)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEECSC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEEeC
Confidence            479999998 99999999999887621  389999987632       1     1222   2345677899999999862


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                          +..            ++++.+.+..+.++..++..+|.++.
T Consensus        68 ----~~~------------~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           68 ----PDI------------AGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             ----TTT------------HHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             ----HHH------------HHHHHHHHHHhcCCCEEEEECCCCCH
Confidence                111            34445556666677778888888865

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.67  E-value=0.00058  Score=61.70  Aligned_cols=157  Identities=12%  Similarity=0.135  Sum_probs=88.4

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc--
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--   94 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--   94 (358)
                      ++.-+.+++.|+||+|++|..++..|+..+.  +|+++|.++  ......++....  .++.... +-+|   ..+.+  
T Consensus         4 ~~~~~~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~   79 (253)
T 3qiv_A            4 SMRFENKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADR   79 (253)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHH
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence            3444566899999999999999999999987  899999876  233333443322  2333322 1122   12222  


Q ss_pred             -----CCCCEEEEcCCCCC----C--CCCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           95 -----EDSDVVIIPAGVPR----K--PGMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        95 -----~~aDiVIi~ag~~~----~--~g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                           ...|++|..||...    .  ...+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++.....      
T Consensus        80 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~------  152 (253)
T 3qiv_A           80 TLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAAW------  152 (253)
T ss_dssp             HHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC----------
T ss_pred             HHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCcccc------
Confidence                 37899999998731    1  12222   3445566555    667777776654 5667766654421      


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                               +....++.+......+-+.+++.++  +..|++..+
T Consensus       153 ---------~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          153 ---------LYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ---------CCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence                     1223455554334456677777764  445655444

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.67  E-value=6.5e-05  Score=71.32  Aligned_cols=100  Identities=16%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+|||+|||+ |.||..++..|...+.  ..+|+++|+++.......+....    +...   ++..+++++||+||++.
T Consensus        21 ~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G----~~~~---~~~~e~~~~aDvVilav   92 (322)
T 2izz_A           21 QSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG----VKLT---PHNKETVQHSDVLFLAV   92 (322)
T ss_dssp             -CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT----CEEE---SCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC----CEEe---CChHHHhccCCEEEEEe
Confidence            4579999998 9999999999988872  13899999875311222232211    2322   34467789999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                      .    +.            .++++...+.... |+.++|.++|....
T Consensus        93 ~----~~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~  123 (322)
T 2izz_A           93 K----PH------------IIPFILDEIGADIEDRHIVVSCAAGVTI  123 (322)
T ss_dssp             C----GG------------GHHHHHHHHGGGCCTTCEEEECCTTCCH
T ss_pred             C----HH------------HHHHHHHHHHhhcCCCCEEEEeCCCCCH
Confidence            2    11            2344455565554 67788888888763

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.66  E-value=0.00052  Score=63.31  Aligned_cols=97  Identities=14%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC-CCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE-DSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~-~aDiVIi~ag~  106 (358)
                      |+||+|||+ |.+|..++..|...++..+|+++|+++....  .+.....  .....   +|+.++++ +||+||++...
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~--~~~~~g~--~~~~~---~~~~~~~~~~aDvVilavp~   72 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESIS--KAVDLGI--IDEGT---TSIAKVEDFSPDFVMLSSPV   72 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHH--HHHHTTS--CSEEE---SCGGGGGGTCCSEEEECSCH
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH--HHHHCCC--ccccc---CCHHHHhcCCCCEEEEcCCH
Confidence            469999997 9999999999998875458999998752211  1222111  11111   34567888 99999998621


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~  148 (358)
                                  ..    ..++...+..+ .++.+++.++|..
T Consensus        73 ------------~~----~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           73 ------------RT----FREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ------------HH----HHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ------------HH----HHHHHHHHHhhCCCCcEEEECCCCc
Confidence                        11    22344444444 3677776666543

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=97.65  E-value=0.00022  Score=66.00  Aligned_cols=109  Identities=14%  Similarity=0.079  Sum_probs=72.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC-----CCEEEEc
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED-----SDVVIIP  103 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-----aDiVIi~  103 (358)
                      ||.|+||+|++|++++..|...+ .  +|++++.........++........+.   ..+.+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADYMD---KEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEEEE---HHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccccc---cHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999887 5  899999765221111222211111121   11233445554     9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |+.......+..+.+..|+.....+.+.+.+...  .+|.+|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433345667788999999999999988765  445444

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.65  E-value=4.8e-05  Score=72.58  Aligned_cols=95  Identities=21%  Similarity=0.292  Sum_probs=64.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC---------CccEEEEecCCccccccCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT---------RSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~---------~~~v~~~~~~~d~~~al~~aD   98 (358)
                      +|||+|||+ |.+|..++..|+..+.  +|.++|+++   ....+.....         ..++..   ++|+ +++.++|
T Consensus         3 ~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~---~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~-~~~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA---TLQALQTAGLRLTEDGATHTLPVRA---THDA-AALGEQD   72 (335)
T ss_dssp             CCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH---HHHHHHHTCEEEEETTEEEEECCEE---ESCH-HHHCCCS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH---HHHHHHHCCCEEecCCCeEEEeeeE---ECCH-HHcCCCC
Confidence            579999998 9999999999999887  899999742   1122221110         111222   2344 3479999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                      +||++.-                ...++++.+.+..+- |+..++.++|.+
T Consensus        73 ~Vilavk----------------~~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           73 VVIVAVK----------------APALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             EEEECCC----------------HHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EEEEeCC----------------chhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            9999862                123455666666654 688888899995

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.63  E-value=0.00027  Score=65.61  Aligned_cols=93  Identities=22%  Similarity=0.342  Sum_probs=61.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      ++||+|||++|.+|..++..|...++  +|+++|+++..  ...+....    +..    .+..+++++||+||++..  
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~--~~~~~~~g----~~~----~~~~~~~~~aDvVi~av~--   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEG--RDRLQGMG----IPL----TDGDGWIDEADVVVLALP--   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHH--HHHHHHTT----CCC----CCSSGGGGTCSEEEECSC--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHhcC----CCc----CCHHHHhcCCCEEEEcCC--
Confidence            47999999669999999999998886  89999986522  11222211    111    134577899999999862  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                                  ..  .++++.+.+..+. |+.+++..++..
T Consensus        77 ------------~~--~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           77 ------------DN--IIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             ------------HH--HHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             ------------ch--HHHHHHHHHHHhCCCCCEEEECCCCc
Confidence                        11  1456666776654 577666555543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.63  E-value=0.00012  Score=64.75  Aligned_cols=101  Identities=17%  Similarity=0.189  Sum_probs=68.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-----CCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-----NDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-----~~d~~~al~~aDiVIi~  103 (358)
                      |||.|+||+|++|+.++..|...+.  +|++++++...     +...   ..++....     .+++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~-----~~~~---~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQ-----VPQY---NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGG-----SCCC---TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccc-----hhhc---CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5899999999999999999998886  99999987521     1111   12333221     12355788999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +|.....      .+..|+.....+++.+++.... .+|.+|.
T Consensus        71 ag~~~~~------~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGKS------LLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTSS------CCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCCC------cEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            9875422      2345666667777777776543 4554544

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=97.60  E-value=0.00029  Score=66.83  Aligned_cols=167  Identities=14%  Similarity=0.027  Sum_probs=97.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCC---CccEEEEec-C---CccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT---RSEVAGYMG-N---DQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~---~~~v~~~~~-~---~d~~~al~~a   97 (358)
                      +++||.|+||+|++|+.++..|...+.  +|+.+|....  .....++.....   ..++..... -   +++.++++++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCC
Confidence            457999999999999999999998886  8999998641  111122211000   013333321 1   2344677899


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-------CcchHHHHHHHHHhCCCCCC
Q 018314           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-------d~~t~~~~~~~~~sg~~~~~  168 (358)
                      |+||.+||.....  ..+..+.+..|+.....+++.+.+.... .+|.+|...       ..++        +.....+.
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~--------E~~~~~~~  174 (352)
T 1sb8_A          104 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKV--------EDTIGKPL  174 (352)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBC--------TTCCCCCC
T ss_pred             CEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCC--------CCCCCCCC
Confidence            9999999864211  1234556778999999999998876544 344444321       0010        00001233


Q ss_pred             ceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          169 KLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       169 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      ..+|.+.....++-..+++..|++..-++ ..++|..
T Consensus       175 ~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~  211 (352)
T 1sb8_A          175 SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRR  211 (352)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcC
Confidence            34444444444555556666677665555 3577754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.60  E-value=0.00025  Score=66.82  Aligned_cols=66  Identities=21%  Similarity=0.250  Sum_probs=48.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++||+|||+ |.+|..++..|...++  +|++||+++..  ..++....    +..   .+++.+++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGK--AAALVAAG----AHL---CESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHT----CEE---CSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhcCCEEEEEe
Confidence            4679999997 9999999999999887  89999987522  12222211    222   245678889999999985

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=97.58  E-value=0.00027  Score=66.52  Aligned_cols=115  Identities=16%  Similarity=0.086  Sum_probs=74.4

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CC---ccccccC--C
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALE--D   96 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~--~   96 (358)
                      ...-+.|+|.|+||+|++|++++..|+..+.  +|+++|++.....  ++....  .++..... -.   ++.++++  +
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~   88 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFK   88 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcC
Confidence            3344567999999999999999999998886  8999998541100  011110  13333321 12   2345667  9


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +|+||++||..........+ +..|+.....+++.+.+.... .+|.+|
T Consensus        89 ~D~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           89 PTHVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             CSEEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             CCEEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            99999999865332222233 778888899999988877543 455454

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=97.58  E-value=0.00013  Score=68.87  Aligned_cols=112  Identities=16%  Similarity=0.090  Sum_probs=73.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEec-C---CccccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiV  100 (358)
                      |++|.|+||+|++|++++..|...+...+|+.+|....   .....++.+    .+++.... -   .++.++++++|+|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d~v   79 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKADAI   79 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCCEE
Confidence            57999999999999999998888732238999998541   111111211    23443321 1   2344678899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |++||.....  ..+..+.+..|+.-...+.+.+.+...  .+|.+|
T Consensus        80 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~S  124 (348)
T 1oc2_A           80 VHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVS  124 (348)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             EECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEec
Confidence            9999864311  012345678899999999999888754  555554

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.57  E-value=8e-05  Score=66.54  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             hhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCC
Q 018314            9 VKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND   88 (358)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~   88 (358)
                      .++..-|--..+..+.+..++||+|||+ |.+|..++..|...++  +|+++|+++.  ...++.+..    +...    
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~--~~~~~~~~g----~~~~----   75 (215)
T 2vns_A            9 LISLHLVDSDSSLAKVPDEAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPK--RTARLFPSA----AQVT----   75 (215)
T ss_dssp             --------------------CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHH--HHHHHSBTT----SEEE----
T ss_pred             cccceeecccccccCCCCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHcC----Ccee----
Confidence            3444445433333334456789999997 9999999999998886  8999998642  222333221    2221    


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      ++.++++++|+||++...    ... .+       +. +    +....++.+++.++|+...
T Consensus        76 ~~~~~~~~~DvVi~av~~----~~~-~~-------v~-~----l~~~~~~~~vv~~s~g~~~  120 (215)
T 2vns_A           76 FQEEAVSSPEVIFVAVFR----EHY-SS-------LC-S----LSDQLAGKILVDVSNPTEQ  120 (215)
T ss_dssp             EHHHHTTSCSEEEECSCG----GGS-GG-------GG-G----GHHHHTTCEEEECCCCCHH
T ss_pred             cHHHHHhCCCEEEECCCh----HHH-HH-------HH-H----HHHhcCCCEEEEeCCCccc
Confidence            345778999999998631    111 01       11 1    2222367888889998753

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.57  E-value=0.00043  Score=64.08  Aligned_cols=92  Identities=20%  Similarity=0.188  Sum_probs=65.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||.|+||+|+||++++..|...|+  +|+.+.+++..            ..+..  +..+ .++++++|.||..|+.+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~------------~~~~~--~~~~-~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGP------------GRITW--DELA-ASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCT------------TEEEH--HHHH-HHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCc------------Ceeec--chhh-HhhccCCCEEEEeccCcc
Confidence            7999999999999999999999998  89888765411            11221  1111 357899999999987542


Q ss_pred             CC-----CC-CHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314          109 KP-----GM-TRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus       109 ~~-----g~-~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                      ..     .. ...+....|+...+.+.+.+++...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~   98 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQ   98 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCC
Confidence            21     11 1345667888888999988887763

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=97.57  E-value=0.0001  Score=70.42  Aligned_cols=111  Identities=15%  Similarity=0.195  Sum_probs=74.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-----CccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-----DQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-----~d~~~al~~aDiV  100 (358)
                      .++||.|+||+|++|+.++..|... +.  +|+.+|+.....  .++..   ...++...+.     .++.++++++|+|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~~~~Dl~~d~~~~~~~~~~~d~V   95 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRL--GDLVK---HERMHFFEGDITINKEWVEYHVKKCDVI   95 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTT--GGGGG---STTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhh--hhhcc---CCCeEEEeCccCCCHHHHHHHhccCCEE
Confidence            3579999999999999999988887 66  899999865211  11111   1234433211     1234567899999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |.+|+......  .+..+.+..|+.....+.+.+++.+  ..+|.+|.
T Consensus        96 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           96 LPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             EECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             EEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            99998643211  2344567788888889999998887  35555544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.56  E-value=0.00026  Score=66.27  Aligned_cols=64  Identities=22%  Similarity=0.349  Sum_probs=47.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++||+|||+ |.+|..++..|+..++  +|++||+++....  .+.+.    .++.   ++++.++++ ||+||++.
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~~~~~----g~~~---~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMT--PLAEA----GATL---ADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSH--HHHHT----TCEE---CSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHC----CCEE---cCCHHHHHh-CCEEEEEC
Confidence            468999997 9999999999999887  8999999862211  11111    1232   245677788 99999986

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.55  E-value=0.0001  Score=68.58  Aligned_cols=65  Identities=12%  Similarity=0.172  Sum_probs=48.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+||+|||+ |.+|..++..|+..++  +|++||+++....  ++.+..    +..   .+++.+++++||+||++.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g----~~~---~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCA--PLVALG----ARQ---ASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGH--HHHHHT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHCC----Cee---cCCHHHHHHcCCEEEEEc
Confidence            469999997 9999999999998887  8999999763211  111111    222   245678889999999986

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=97.55  E-value=0.00015  Score=69.66  Aligned_cols=99  Identities=11%  Similarity=0.277  Sum_probs=61.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHH-HHhh-cC------CCCccEEEEecCCccccccCCCCEEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVA-ADVG-HI------NTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~-~dl~-~~------~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ||+|||+ |.+|..++..|+..++  +|.+||+++..... .+.. ..      ..+..+...   +|+.++++++|+||
T Consensus        17 kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~aDvVi   90 (366)
T 1evy_A           17 KAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFT---SDVEKAYNGAEIIL   90 (366)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEE---SCHHHHHTTCSSEE
T ss_pred             eEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceeee---CCHHHHHcCCCEEE
Confidence            9999998 9999999999998876  89999987522111 1110 00      011234442   45567789999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHhhC-C-CeEEEEeeCCCCc
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSA----IAKYC-P-NAIVNMISNPVNS  150 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~----i~~~~-p-~a~iiv~tNP~d~  150 (358)
                      ++...                ..+++++..    +..+. | +.+++.++|..+.
T Consensus        91 lav~~----------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           91 FVIPT----------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             ECCCH----------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             ECCCh----------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            98520                123333333    43332 4 6677778876543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.54  E-value=0.00067  Score=62.45  Aligned_cols=91  Identities=15%  Similarity=0.142  Sum_probs=59.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+|||+ |.+|..++..|...++  +|+++|+++....  .+......  ....   +|+.++ +++|+||++...  
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g~~--~~~~---~~~~~~-~~~D~vi~av~~--   67 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCE--KAVERQLV--DEAG---QDLSLL-QTAKIIFLCTPI--   67 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTTSC--SEEE---SCGGGG-TTCSEEEECSCH--
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhCCCC--cccc---CCHHHh-CCCCEEEEECCH--
Confidence            58999997 9999999999998887  8999998752211  12221211  1222   345566 999999998621  


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                                    ..+.++.+.+..+. |+.+++.++|
T Consensus        68 --------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           68 --------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             --------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence                          13455556666654 5776665544

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.54  E-value=0.00013  Score=68.93  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=70.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC-----CCc-----cEEEEecCCccccccCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRS-----EVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-----~~~-----~v~~~~~~~d~~~al~~aD   98 (358)
                      |||+|||+ |.+|..++..|+..+.  +|.++|.++.  .  .+....     ...     .+..+   ++. +++.++|
T Consensus         3 mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~--~--~i~~~g~~~~~~~g~~~~~~~~~~---~~~-~~~~~~D   71 (312)
T 3hn2_A            3 LRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRDY--E--AIAGNGLKVFSINGDFTLPHVKGY---RAP-EEIGPMD   71 (312)
T ss_dssp             -CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTTH--H--HHHHTCEEEEETTCCEEESCCCEE---SCH-HHHCCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCcH--H--HHHhCCCEEEcCCCeEEEeeceee---cCH-HHcCCCC
Confidence            69999998 9999999999999886  8999998752  1  122111     001     11221   343 4578999


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      +||++.-    +..            +++..+.++.+- |+..|+.+.|-.+....+.    +.   +|..++++-
T Consensus        72 ~vilavk----~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~----~~---~~~~~v~~~  124 (312)
T 3hn2_A           72 LVLVGLK----TFA------------NSRYEELIRPLVEEGTQILTLQNGLGNEEALA----TL---FGAERIIGG  124 (312)
T ss_dssp             EEEECCC----GGG------------GGGHHHHHGGGCCTTCEEEECCSSSSHHHHHH----HH---TCGGGEEEE
T ss_pred             EEEEecC----CCC------------cHHHHHHHHhhcCCCCEEEEecCCCCcHHHHH----HH---CCCCcEEEE
Confidence            9999862    111            223445555554 6888888999987654432    22   666777754

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.52  E-value=0.00024  Score=67.07  Aligned_cols=98  Identities=21%  Similarity=0.333  Sum_probs=62.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec--CCcHHHHHHhhcCCC----C---ccEEEEecCCccccccCCCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINT----R---SEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~--~~~~~~~~dl~~~~~----~---~~v~~~~~~~d~~~al~~aDi   99 (358)
                      |||+|||+ |.+|+.++..|+..++  +|.++|+  ++.  ....+.....    .   ..+.... .+++.++++++|+
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~D~   74 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTE--ILKSISAGREHPRLGVKLNGVEIFW-PEQLEKCLENAEV   74 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHH--HHHHHHTTCCBTTTTBCCCSEEEEC-GGGHHHHHTTCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHH--HHHHHHHhCcCcccCccccceEEec-HHhHHHHHhcCCE
Confidence            58999998 9999999999998887  8999998  542  2222322111    0   1233321 1155567899999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ||++...+                .+.++.+.+....|+.+++.++|..
T Consensus        75 vi~~v~~~----------------~~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           75 VLLGVSTD----------------GVLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             EEECSCGG----------------GHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             EEEcCChH----------------HHHHHHHHHhcCCCCCEEEEEcCcC
Confidence            99986321                1233444454434677778788876

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.50  E-value=0.00021  Score=63.86  Aligned_cols=111  Identities=18%  Similarity=0.177  Sum_probs=73.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDiVIi~  103 (358)
                      .++|.|+||+|++|+.++..|+..+...+|+++|+++....  ++..    ..+....    +.+++.+++++.|+||.+
T Consensus        18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~--~~~~----~~~~~~~~D~~d~~~~~~~~~~~d~vi~~   91 (242)
T 2bka_A           18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD--EEAY----KNVNQEVVDFEKLDDYASAFQGHDVGFCC   91 (242)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC--SGGG----GGCEEEECCGGGGGGGGGGGSSCSEEEEC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcc--cccc----CCceEEecCcCCHHHHHHHhcCCCEEEEC
Confidence            46899999999999999999998886558999998752100  0000    0111111    123456778899999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||.... +....+.+..|......+++.+.+.... .+|++|.
T Consensus        92 ag~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS  132 (242)
T 2bka_A           92 LGTTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSS  132 (242)
T ss_dssp             CCCCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CCcccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEcc
Confidence            985321 1123456677888888888888876543 4555544

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.49  E-value=0.0011  Score=57.22  Aligned_cols=103  Identities=13%  Similarity=0.152  Sum_probs=68.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDiVIi~a  104 (358)
                      |||.|+||+|.+|+.++..|...+.  +|+++++++..     +.... ..+++.... -   +++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhh-----ccccc-CCceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999998886  99999986521     11110 112332221 1   23456788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |.......     ...|......+.+.+.+.... .++.+|
T Consensus        76 ~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLSP-----TTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCCc-----cchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            86432111     126777788888888877544 344444

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=97.49  E-value=0.00034  Score=65.18  Aligned_cols=167  Identities=13%  Similarity=0.089  Sum_probs=93.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccCC--CCE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALED--SDV   99 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~~--aDi   99 (358)
                      .++++|.|+||+|++|++++..|...+.  +|+++|.+... .  .+       .+.... +-   +++.+++++  .|+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~--~l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~   77 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-K--LP-------NVEMISLDIMDSQRVKKVISDIKPDY   77 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-C--CT-------TEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-c--cc-------eeeEEECCCCCHHHHHHHHHhcCCCE
Confidence            4667999999999999999999998886  99999986521 1  01       222221 11   123345655  899


Q ss_pred             EEEcCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHH--HHHHHHHhCCCCCCceEeecc
Q 018314          100 VIIPAGVPRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI--AAEVFKKAGTYNEKKLFGVTT  175 (358)
Q Consensus       100 VIi~ag~~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~--~~~~~~~sg~~~~~kviG~t~  175 (358)
                      ||++||....  ...+..+.+..|+.....+.+.+.+......+|.+|... +....  -.....+....++...+|.+.
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~-v~g~~~~~~~~~~E~~~~~~~~~Y~~sK  156 (321)
T 2pk3_A           78 IFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSE-EYGMILPEESPVSEENQLRPMSPYGVSK  156 (321)
T ss_dssp             EEECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGG-GTBSCCGGGCSBCTTSCCBCCSHHHHHH
T ss_pred             EEEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHH-hcCCCCCCCCCCCCCCCCCCCCccHHHH
Confidence            9999986431  122456678889999999999997664344555554321 00000  000000000023333444443


Q ss_pred             ccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          176 LDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       176 lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      ....++-..+++..|++..-++ ..++|...
T Consensus       157 ~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~  187 (321)
T 2pk3_A          157 ASVGMLARQYVKAYGMDIIHTRTFNHIGPGQ  187 (321)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECEEECTTC
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEeCcccCcCC
Confidence            3344454555555566544444 35677543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.49  E-value=0.00011  Score=67.68  Aligned_cols=99  Identities=18%  Similarity=0.199  Sum_probs=64.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCc---cEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRS---EVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~---~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |||+|||+ |.+|..++..|...++  +|.++|+++....  ++.......   ......  ++ .++++++|+||++..
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~--~l~~~~~~~~~~~~~~~~--~~-~~~~~~~d~vi~~v~   72 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYC--SVNLVETDGSIFNESLTA--ND-PDFLATSDLLLVTLK   72 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEE--EEEEECTTSCEEEEEEEE--SC-HHHHHTCSEEEECSC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCcccee--eEEEEcCCCceeeeeeee--cC-ccccCCCCEEEEEec
Confidence            58999998 9999999999999887  9999998762111  122111000   111111  23 467889999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNST  151 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~  151 (358)
                      .+    .            +.++.+.+..+. |+.+++.++|..+..
T Consensus        73 ~~----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~~  103 (291)
T 1ks9_A           73 AW----Q------------VSDAVKSLASTLPVTTPILLIHNGMGTI  103 (291)
T ss_dssp             GG----G------------HHHHHHHHHTTSCTTSCEEEECSSSCTT
T ss_pred             HH----h------------HHHHHHHHHhhCCCCCEEEEecCCCCcH
Confidence            21    1            244555666554 677788889987654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.47  E-value=0.00042  Score=63.92  Aligned_cols=92  Identities=13%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |+||+|||+ |.+|..++..|.. ++  +|+++|+++....  .+....    +...   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~--~~~~~g----~~~~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKAL--RHQEEF----GSEA---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHH--HHHHHH----CCEE---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHHCC----Cccc---C-HHHHHhCCCEEEEeCCCh
Confidence            468999998 9999999999988 76  8999998763211  111111    1111   1 356788999999986321


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                                     ..++++.+.+.+.. ++.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           11233345554443 577777777754

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=97.46  E-value=0.00024  Score=68.27  Aligned_cols=172  Identities=13%  Similarity=0.057  Sum_probs=96.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC----CccccccCCCCEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~aDiV  100 (358)
                      .++|||.|+||+|++|+.++..|...+ .  +|+++|....... ..+..   ...++...+.    +++.++++++|+|
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~V  103 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYV  103 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEE
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEE
Confidence            356799999999999999999999887 6  8999997642110 11110   1234443211    2344678899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcchHHHHHHHH--HhC---CC-CCCceE
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTVPIAAEVFK--KAG---TY-NEKKLF  171 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t~~~~~~~~--~sg---~~-~~~kvi  171 (358)
                      |.+|+.....  ..+..+.+..|+.....+++.+.+. ... .+|.+|... +...--.....  ...   .. ++...+
T Consensus       104 ih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y  181 (377)
T 2q1s_A          104 FHLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPY  181 (377)
T ss_dssp             EECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCch
Confidence            9999854211  1234567788999999999998876 433 344444321 11000000000  100   01 223334


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecC
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHA  205 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg  205 (358)
                      |.+.....++-..+++..|++..-++ ..++|...
T Consensus       182 ~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~  216 (377)
T 2q1s_A          182 SMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGE  216 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCC
Confidence            44444444555555566677655555 35777543

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=97.45  E-value=0.00038  Score=65.56  Aligned_cols=111  Identities=19%  Similarity=0.111  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CC---ccccccCC--CCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-ND---QLGQALED--SDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~--aDiV  100 (358)
                      ++|+|.|+||+|++|++++..|...+.  +|+++|.+.... ...+.+.   .++..... -.   ++.+++++  +|+|
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~-~~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGR-REHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDAV   93 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCC-GGGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccc-hhhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcEE
Confidence            467999999999999999999998886  899999864110 0011111   13333321 12   23356677  9999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |.+||..........+ +..|+.....+++.+.+.... .+|.+|
T Consensus        94 ih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           94 VHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            9999864332222223 778888889999888876533 455444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=97.45  E-value=0.00046  Score=64.79  Aligned_cols=109  Identities=16%  Similarity=0.107  Sum_probs=71.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc----cccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aDiVIi  102 (358)
                      |||.|+||+|++|++++..|... +.  +|+.+|.+.....  ++..   ...++...+ -.|    +.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--Hhhc---CCCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999887 66  8999998652211  1111   123433321 111    3346678999999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +||.....  ..+..+.+..|+.....+.+.+.+..  ..+|.+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99864311  12344567788888888888888765  45555544

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=97.45  E-value=0.00051  Score=65.31  Aligned_cols=117  Identities=13%  Similarity=0.023  Sum_probs=70.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCC--CCccEEEEec-CC---ccccccCC--
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN--TRSEVAGYMG-ND---QLGQALED--   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~--~~~~v~~~~~-~~---d~~~al~~--   96 (358)
                      |++|.|+||+|++|++++..|+..+.  +|+++|.+...   ....++....  ...++..... -.   ++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999998886  89999976421   1111111100  0123333221 11   22344554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEeeC
Q 018314           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~iiv~tN  146 (358)
                      .|+||++||.....  ..+....+..|+.-...+.+.+.+...  ...+|.+|.
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS  132 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST  132 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCC
Confidence            69999999864322  133455677888889999998888764  245665543

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.44  E-value=0.00075  Score=60.65  Aligned_cols=116  Identities=13%  Similarity=0.130  Sum_probs=69.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++...   .++.... +-+|   +.+.+      
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999887  8999998652  2222233221   2333332 1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|+||..||.....   ..+.   ...+..|+.    ..+.+.+.+++....+.||+++..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence             2589999999864321   1222   345566665    555666666554432667766654

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.44  E-value=0.0017  Score=59.63  Aligned_cols=118  Identities=20%  Similarity=0.265  Sum_probs=73.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.......++..+. +-+|   +.+++       
T Consensus        32 ~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           32 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            45899999999999999999999886  8999998752  22233333322222343332 1122   12222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCC-CeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCP-NAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p-~a~iiv~tNP  147 (358)
                      .+.|+||.+||.....   ..+.   ...+..|+.-    .+.+.+.+++... .+.||+++..
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~  173 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM  173 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence            2799999999864321   1222   3345566555    7788888877653 4667766543

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.43  E-value=0.00029  Score=65.48  Aligned_cols=65  Identities=23%  Similarity=0.225  Sum_probs=47.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |||+|||+ |.+|..++..|...++  +|.++|+++...  ..+....    +..   .+++.++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAI--ADVIAAG----AET---ASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHH--HHHHHTT----CEE---CSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHH--HHHHHCC----Cee---cCCHHHHHhCCCEEEEECC
Confidence            69999997 9999999999998886  899999875221  2222211    222   2455677899999999863

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=97.43  E-value=0.00036  Score=66.17  Aligned_cols=114  Identities=18%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec-CC---ccccccCC--CCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-ND---QLGQALED--SDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~~--aDi   99 (358)
                      +++|.|+||+|++|++++..|...+.  +|+++|.+.  .......+..   ..++..... -.   ++.+++++  .|+
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   83 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARV---ADGMQSEIGDIRDQNKLLESIREFQPEI   83 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTT---TTTSEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhcc---CCceEEEEccccCHHHHHHHHHhcCCCE
Confidence            46999999999999999999999886  899999865  1112221211   112332221 11   23345555  899


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       100 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||++||.+...  .....+.+..|+.....+.+.+.+......+|.+|.
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS  132 (357)
T 1rkx_A           84 VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITS  132 (357)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECC
T ss_pred             EEECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecC
Confidence            99999864211  123446678899888999998888753345555543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.43  E-value=0.00041  Score=64.79  Aligned_cols=102  Identities=14%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhC-----C-CCcEEEEEecCCcHHHHHHhhc-CCC-----C-----ccEEEEe
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLN-----P-LVSRLALYDIANTPGVAADVGH-INT-----R-----SEVAGYM   85 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-----~-~~~ei~L~D~~~~~~~~~dl~~-~~~-----~-----~~v~~~~   85 (358)
                      +|+..+|||+|||+ |.+|..++..|...     + +  +|.++|+ +  .....+.+ ...     .     .++... 
T Consensus         3 ~m~~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~--~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-   75 (317)
T 2qyt_A            3 AMNQQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-G--AHLEAIRAAGGLRVVTPSRDFLARPTCVT-   75 (317)
T ss_dssp             ----CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-H--HHHHHHHHHTSEEEECSSCEEEECCSEEE-
T ss_pred             CCCCCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-H--HHHHHHHhcCCeEEEeCCCCeEEecceEe-
Confidence            45666789999998 99999999999887     6 5  8999997 3  22222322 110     0     011111 


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                        ++ .++++++|+||++...+    .            +.++.+.+..+- |+..+|.++|..+.
T Consensus        76 --~~-~~~~~~~D~vil~vk~~----~------------~~~v~~~i~~~l~~~~~iv~~~nG~~~  122 (317)
T 2qyt_A           76 --DN-PAEVGTVDYILFCTKDY----D------------MERGVAEIRPMIGQNTKILPLLNGADI  122 (317)
T ss_dssp             --SC-HHHHCCEEEEEECCSSS----C------------HHHHHHHHGGGEEEEEEEEECSCSSSH
T ss_pred             --cC-ccccCCCCEEEEecCcc----c------------HHHHHHHHHhhcCCCCEEEEccCCCCc
Confidence              22 35678999999986322    1            233445555543 56777777887654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=97.43  E-value=0.00059  Score=68.10  Aligned_cols=118  Identities=16%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHH-HHHhhcCC--------------CCccEEEEecC-C
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGV-AADVGHIN--------------TRSEVAGYMGN-D   88 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~-~~dl~~~~--------------~~~~v~~~~~~-~   88 (358)
                      .++++|.|+||+|++|+.++..|...+. ..+|+++++.+.... ...+.+..              ...++....+. +
T Consensus        71 ~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~  150 (478)
T 4dqv_A           71 PELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDKS  150 (478)
T ss_dssp             SCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeECC
Confidence            4678999999999999999998888732 249999998762211 11121110              01245544321 1


Q ss_pred             ---------ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           89 ---------QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        89 ---------d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                               ++.+.++++|+||.+|+....  ....+.+..|+.....+++.+.+...+.++.+-|
T Consensus       151 ~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          151 EPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             SGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             CcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence                     233456789999999986433  2223457789999999999988876554444333

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.43  E-value=9e-05  Score=67.46  Aligned_cols=96  Identities=13%  Similarity=0.272  Sum_probs=60.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +||+|||+ |.+|..++..|...++  ..+|++||+++..  ..++.+..   .+..   ..|..+++++||+||++. .
T Consensus         3 ~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~--~~~~~~~~---g~~~---~~~~~e~~~~aDvVilav-~   72 (247)
T 3gt0_A            3 KQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTAN--LKNASEKY---GLTT---TTDNNEVAKNADILILSI-K   72 (247)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHH--HHHHHHHH---CCEE---CSCHHHHHHHCSEEEECS-C
T ss_pred             CeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHH--HHHHHHHh---CCEE---eCChHHHHHhCCEEEEEe-C
Confidence            68999997 9999999999998875  3589999987522  12222110   1222   245567889999999986 1


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d  149 (358)
                         +.            .++++.+.+..+. |+.++|..++.+.
T Consensus        73 ---~~------------~~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           73 ---PD------------LYASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             ---TT------------THHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             ---HH------------HHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence               11            1344555666554 5665554555544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=97.43  E-value=3.8e-05  Score=73.64  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||.|+||+|++|++++..|...+. .+++..|++                     .+.+++.++++++|+||.+|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~-~~v~~~d~~---------------------~d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTD-HHIFEVHRQ---------------------TKEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCC-CEEEECCTT---------------------CCHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC-CEEEEECCC---------------------CCHHHHHHHhccCCEEEECCcCCC
Confidence            6899999999999999998888774 278888874                     011234566778999999998644


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ..  ...+....|+...+.+++.+++......+|.+|
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~S   93 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSS   93 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeC
Confidence            22  122234567888888888888877554555444

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.42  E-value=0.00032  Score=62.60  Aligned_cols=113  Identities=16%  Similarity=0.053  Sum_probs=71.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~a  104 (358)
                      .+++|.|+||+|++|+.++..|+..+...+|+++++++..  ..++..   ........  +.+++.++++++|+||.++
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~--~~~~~~---~~~~~~~D~~d~~~~~~~~~~~d~vi~~a   77 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGG---EADVFIGDITDADSINPAFQGIDALVILT   77 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH--HHHTTC---CTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc--hhhcCC---CeeEEEecCCCHHHHHHHHcCCCEEEEec
Confidence            4579999999999999999999988322389999986421  122211   11111111  1123456788999999999


Q ss_pred             CCCCC------------CCC---CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRK------------PGM---TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~------------~g~---~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |....            +..   .-.+.+..|+.....+++.+.+.... .+|.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           78 SAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             cccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            85321            110   01135678888888899888887644 445444

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.42  E-value=0.00023  Score=67.30  Aligned_cols=71  Identities=15%  Similarity=0.227  Sum_probs=47.7

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...++||+|||+ |.+|..++..|+..++ .+|++||++........+....    +..   .+++.+++++||+||++.
T Consensus        21 ~~~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   91 (312)
T 3qsg_A           21 QSNAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRPRAEELG----VSC---KASVAEVAGECDVIFSLV   91 (312)
T ss_dssp             ----CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHHHHHHTT----CEE---CSCHHHHHHHCSEEEECS
T ss_pred             cCCCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHHHHHHCC----CEE---eCCHHHHHhcCCEEEEec
Confidence            345789999997 9999999999988774 4899999862111222222222    222   245567889999999986

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=97.42  E-value=0.00019  Score=68.55  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=75.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEec-C---CccccccCCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG-N---DQLGQALEDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~aDi   99 (358)
                      +.++|.|+||+|++|+.++..|+.. +. .+|+++|+++..  ....++..    .+++.+.+ -   +++.+++++.|+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            3569999999999999999988887 53 389999987522  22222321    23443321 1   234467889999


Q ss_pred             EEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          100 VIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       100 VIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ||.+||....+  .....+.+..|+.....+++...+.... .+|.+|
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            99999865321  1234567888999999999999887644 344444

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.42  E-value=0.00061  Score=68.45  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC-CCCccEEEEecCCcccccc---CCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI-NTRSEVAGYMGNDQLGQAL---EDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~-~~~~~v~~~~~~~d~~~al---~~aDiVIi  102 (358)
                      .++||+|||+ |.||.+++..|+..++  +|++||+++...  .++... ....++...   +++.+++   +++|+||+
T Consensus         3 ~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~--~~l~~~g~~g~~i~~~---~s~~e~v~~l~~aDvVil   74 (484)
T 4gwg_A            3 AQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKV--DDFLANEAKGTKVVGA---QSLKEMVSKLKKPRRIIL   74 (484)
T ss_dssp             CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHHTTTTTSSCEEC---SSHHHHHHTBCSSCEEEE
T ss_pred             CCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHhcccCCCceecc---CCHHHHHhhccCCCEEEE
Confidence            4679999997 9999999999999987  899999986322  222221 111234332   3444544   46999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                      +...    +           +.++++...+..+- |+.++|..+|-.
T Consensus        75 ~Vp~----~-----------~~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           75 LVKA----G-----------QAVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             CSCS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             ecCC----h-----------HHHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            8522    1           12334445555554 677777777655

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.41  E-value=0.00028  Score=66.31  Aligned_cols=66  Identities=11%  Similarity=0.102  Sum_probs=47.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++||+|||+ |.+|..++..|...++  +|.++|+++....  .+....    +..   ..++.++++++|+||++.
T Consensus        29 ~~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~DvVi~av   94 (316)
T 2uyy_A           29 TDKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCD--LFIQEG----ARL---GRTPAEVVSTCDITFACV   94 (316)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGH--HHHHTT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHcC----CEE---cCCHHHHHhcCCEEEEeC
Confidence            3579999997 9999999999998886  8999998763221  122211    222   234567789999999986

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.41  E-value=0.00011  Score=58.02  Aligned_cols=73  Identities=25%  Similarity=0.251  Sum_probs=48.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~a  104 (358)
                      .++||.|+|+ |.+|..++..|...+ ..+|+++|+++....  .+.+..  .......  ...++.+.++++|+||.++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g-~~~v~~~~r~~~~~~--~~~~~~--~~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSS-NYSVTVADHDLAALA--VLNRMG--VATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCS-SEEEEEEESCHHHHH--HHHTTT--CEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCC-CceEEEEeCCHHHHH--HHHhCC--CcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4579999998 999999999999887 238999998752222  122111  1111111  1123446788999999998


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.41  E-value=0.00057  Score=64.94  Aligned_cols=135  Identities=18%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             CCCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc--CCCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL--EDSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--~~aDiVIi  102 (358)
                      +.++||.|||. |.+|.+ +|..|...|.  +|..+|.++.......|.+..  ..+.  .+. + .+.+  .++|+||.
T Consensus         2 ~~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g--i~v~--~g~-~-~~~l~~~~~d~vV~   72 (326)
T 3eag_A            2 NAMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG--IDVY--EGF-D-AAQLDEFKADVYVI   72 (326)
T ss_dssp             -CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT--CEEE--ESC-C-GGGGGSCCCSEEEE
T ss_pred             CCCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC--CEEE--CCC-C-HHHcCCCCCCEEEE
Confidence            35679999998 999985 8889999998  999999875222223344332  2333  232 2 2345  48999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-hCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK-YCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~-~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +.|+|...-+ ......++++++.++ +.+.+ ...+..+|-+|=.++  ..|.+++++++..| .++.-++|
T Consensus        73 Spgi~~~~p~-~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g-~~~~~~~g  142 (326)
T 3eag_A           73 GNVAKRGMDV-VEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG-LAPGFLIG  142 (326)
T ss_dssp             CTTCCTTCHH-HHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CCCcCCCCHH-HHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEec
Confidence            9988742211 112234455555443 22222 233445666776666  67888888888887 54433343

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=97.41  E-value=0.00013  Score=67.21  Aligned_cols=100  Identities=21%  Similarity=0.198  Sum_probs=70.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~  103 (358)
                      .+++||.|+||+|++|++++..|...+.  +|+.+|++.     .|+.+            .+++.++++  ++|+||.+
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d------------~~~~~~~~~~~~~d~vih~   70 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITN------------VLAVNKFFNEKKPNVVINC   70 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTC------------HHHHHHHHHHHCCSEEEEC
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCC------------HHHHHHHHHhcCCCEEEEC
Confidence            4678999999999999999999998886  899998752     12221            122345566  79999999


Q ss_pred             CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ||.....  ..+..+.+..|+.....+.+.+.+...  .+|.+|.
T Consensus        71 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS  113 (292)
T 1vl0_A           71 AAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIST  113 (292)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEE
T ss_pred             CccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEech
Confidence            9864311  123456778899999999999888764  5555543

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.40  E-value=0.00041  Score=64.57  Aligned_cols=66  Identities=17%  Similarity=0.325  Sum_probs=47.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +++||+|||+ |.+|..++..|...++  +|+++|+++..  ...+.+..    +..   .+++.++++++|+||++.
T Consensus         3 ~~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~--~~~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            3 KSIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEAN--VAAVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             -CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHH--HHHHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            3579999997 9999999999988886  89999986522  22233221    232   245567788999999986

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=97.40  E-value=0.00013  Score=66.97  Aligned_cols=96  Identities=21%  Similarity=0.237  Sum_probs=69.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~  106 (358)
                      |||.|+||+|++|++++..|...+.  +|+.++..+     .|+.+            .+++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d------------~~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITN------------ISQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            3899999999999999999988886  899998732     12211            122344555  69999999986


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ....  .....+.+..|+.....+.+.+++.+.  .+|.+|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            5422  135567788999999999999998865  455444

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.39  E-value=0.00031  Score=64.01  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=59.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+|||+ |.+|..++..|...+. .+|.++|+++..  ...+....   .+...   +++.+++ ++|+||++..   
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~~~--~~~~~~~~---g~~~~---~~~~~~~-~~D~vi~~v~---   66 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---ATLPELH-SDDVLILAVK---   66 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SSCCCCC-TTSEEEECSC---
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCHHH--HHHHHHhc---CCEEe---CCHHHHh-cCCEEEEEeC---
Confidence            58999997 9999999999988772 389999987522  12222211   12322   3345677 9999999862   


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                                   ...++++.+.+.. . +.+++.++|..+.
T Consensus        67 -------------~~~~~~v~~~l~~-~-~~ivv~~~~g~~~   93 (263)
T 1yqg_A           67 -------------PQDMEAACKNIRT-N-GALVLSVAAGLSV   93 (263)
T ss_dssp             -------------HHHHHHHHTTCCC-T-TCEEEECCTTCCH
T ss_pred             -------------chhHHHHHHHhcc-C-CCEEEEecCCCCH
Confidence                         1123444444443 3 6666666677664

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.00036  Score=66.08  Aligned_cols=65  Identities=23%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCC-----cHHHHHHhhcCCCCccEEEEecCC-ccccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMGND-QLGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~~~-d~~~al~~aDiV  100 (358)
                      ++||+|||+ |.+|..++..|+..+ +  +|++||+++     .......+....    + .    + ++.+++++||+|
T Consensus        24 ~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~-~----~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V-E----PLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C-E----EESSGGGGGGCSEE
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C-C----CCCHHHHHhcCCEE
Confidence            469999997 999999999999988 6  999999874     112223333222    1 1    2 346789999999


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      |++.
T Consensus        92 i~av   95 (317)
T 4ezb_A           92 LSLV   95 (317)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9986

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=97.39  E-value=0.00033  Score=65.56  Aligned_cols=109  Identities=15%  Similarity=0.037  Sum_probs=71.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCC---ccccccC--CCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQALE--DSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~--~aDiVI  101 (358)
                      ||||.|+||+|++|++++..|...+.  +|+.+|....... ..+..     .++... +-.   ++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999998886  8999987541100 11111     222221 111   2335566  899999


Q ss_pred             EcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          102 IPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       102 i~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++|+.....  ..+..+.+..|+.....+++.+.+.... .+|.+|
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  117 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSS  117 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEC
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeC
Confidence            999864311  1234566788999999999998876543 344444

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.37  E-value=0.00069  Score=68.00  Aligned_cols=102  Identities=13%  Similarity=0.196  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC---CCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVIi~a  104 (358)
                      .+||+|||+ |.+|.+++..|+..++  +|.+||+++..  +.++........+..   ++|+.+++++   +|+||++.
T Consensus        15 ~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~V   86 (480)
T 2zyd_A           15 KQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREK--TEEVIAENPGKKLVP---YYTVKEFVESLETPRRILLMV   86 (480)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHH--HHHHHHHSTTSCEEE---CSSHHHHHHTBCSSCEEEECS
T ss_pred             CCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHhhCCCCCeEE---eCCHHHHHhCCCCCCEEEEEC
Confidence            458999998 9999999999999887  89999987522  222221100113443   2456666666   99999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t  152 (358)
                      -    +++           .++++.+.+..+. |+.+||..+|.....+
T Consensus        87 p----~~~-----------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t  120 (480)
T 2zyd_A           87 K----AGA-----------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDT  120 (480)
T ss_dssp             C----SSS-----------HHHHHHHHHGGGCCTTCEEEECSCCCHHHH
T ss_pred             C----CHH-----------HHHHHHHHHHhhcCCCCEEEECCCCCHHHH
Confidence            2    221           1333445555554 5778888888764433

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=97.36  E-value=0.00036  Score=65.73  Aligned_cols=119  Identities=9%  Similarity=0.113  Sum_probs=70.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC----CccEEEEecCCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----RSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +|||+|||+ |.+|..++..|. .+.  +|.++++++....  .+.....    +........+.+ .++..++|+||++
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~--~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vila   74 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAA--AIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVT   74 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHH--HHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHH--HHHhCCceEecCCCeeccccccc-ccccCCCCEEEEE
Confidence            379999998 999999999999 775  9999998652111  1211110    000000000001 2457899999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-cccc
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLD  177 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~ld  177 (358)
                      .-    +.+            +.++.+.++...++. |+.+.|-++....     ++.  .+|.+++++- +...
T Consensus        75 vK----~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~~e~-----l~~--~~~~~~vl~g~~~~~  125 (307)
T 3ego_A           75 VK----QHQ------------LQSVFSSLERIGKTN-ILFLQNGMGHIHD-----LKD--WHVGHSIYVGIVEHG  125 (307)
T ss_dssp             CC----GGG------------HHHHHHHTTSSCCCE-EEECCSSSHHHHH-----HHT--CCCSCEEEEEEECCE
T ss_pred             eC----HHH------------HHHHHHHhhcCCCCe-EEEecCCccHHHH-----HHH--hCCCCcEEEEEEeec
Confidence            62    111            234445565555677 8888998865422     222  2678888755 5443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.36  E-value=0.00073  Score=58.17  Aligned_cols=135  Identities=10%  Similarity=0.051  Sum_probs=78.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cccc--cCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA--LEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a--l~~aDiVI  101 (358)
                      .++|.|+|+ |.+|..++..|... +.  +++++|.++...  ..+.....  .+... +.++   +.++  +.++|+||
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~--~~~~~~g~--~~~~g-d~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAA--QQHRSEGR--NVISG-DATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHH--HHHHHTTC--CEEEC-CTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHH--HHHHHCCC--CEEEc-CCCCHHHHHhccCCCCCCEEE
Confidence            468999997 99999999999887 76  899999875221  22222221  22111 1112   3344  78999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHH
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRA  181 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~  181 (358)
                      ++.+..           ..|.    .++..+++.+|+..++..+|-.+..     +.++..|   .+.++.-...-..++
T Consensus       111 ~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~~~-----~~l~~~G---~~~vi~p~~~~a~~l  167 (183)
T 3c85_A          111 LAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPDQL-----EGLLESG---VDAAFNIYSEAGSGF  167 (183)
T ss_dssp             ECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHHHH-----HHHHHHT---CSEEEEHHHHHHHHH
T ss_pred             EeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHHHH-----HHHHHcC---CCEEEchHHHHHHHH
Confidence            976321           2333    3344666777887777666543222     1234455   345655443334455


Q ss_pred             HHHHHHHcCCCC
Q 018314          182 KTFYAGKANVNV  193 (358)
Q Consensus       182 ~~~la~~l~v~~  193 (358)
                      ...+.+.++.+-
T Consensus       168 ~~~~~~~~~~~~  179 (183)
T 3c85_A          168 ARHVCKQLEPQF  179 (183)
T ss_dssp             HHHHHHHHCCCC
T ss_pred             HHHHHHhcCCcc
Confidence            555556665443

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=97.35  E-value=0.00038  Score=64.73  Aligned_cols=104  Identities=17%  Similarity=0.201  Sum_probs=57.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC--CCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiVIi~ag  105 (358)
                      .+||.|+||+|++|++++..|...+.  +|+.+|.+....   +    ....++.   ..+++.+++++  .|+||++||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~---d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLL---DSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCC---CHHHHHHHHHhhCCCEEEECCc
Confidence            36899999999999999999998886  899998654220   0    1011111   11234456664  899999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .....  ..+..+.+..|+.....+++.+.+...  .+|.+|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123345677888888999998888753  555554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.34  E-value=0.00042  Score=65.94  Aligned_cols=72  Identities=25%  Similarity=0.338  Sum_probs=47.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH-HHHhhc-----CCCC--ccE-EEEecCCccccccCCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGH-----INTR--SEV-AGYMGNDQLGQALEDSD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~-----~~~~--~~v-~~~~~~~d~~~al~~aD   98 (358)
                      +|||+|||+ |.+|..++..|...++  +|.++|+++.... ..+...     ....  .++ ..   ++|+.++++++|
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D   77 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL---TSDIGLAVKDAD   77 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEE---ESCHHHHHTTCS
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEecccccccccccee---cCCHHHHHhcCC
Confidence            479999998 9999999999998886  8999998652211 111100     0000  011 11   245567789999


Q ss_pred             EEEEcCC
Q 018314           99 VVIIPAG  105 (358)
Q Consensus        99 iVIi~ag  105 (358)
                      +||++..
T Consensus        78 ~vi~~v~   84 (359)
T 1bg6_A           78 VILIVVP   84 (359)
T ss_dssp             EEEECSC
T ss_pred             EEEEeCC
Confidence            9999863

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.33  E-value=0.00021  Score=66.28  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=45.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +|||+|||+ |.+|..++..|...++  +|+++| ++....  .+....    +..   .+++.++++++|+||++.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~--~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVAD--ELLSLG----AVN---VETARQVTEFADIIFIMV   66 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCH--HHHTTT----CBC---CSSHHHHHHTCSEEEECC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHH--HHHHcC----Ccc---cCCHHHHHhcCCEEEEEC
Confidence            579999997 9999999999998886  899999 762111  122111    111   245567789999999986

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.33  E-value=0.0029  Score=58.35  Aligned_cols=130  Identities=17%  Similarity=0.191  Sum_probs=72.8

Q ss_pred             cccccccccCCC------CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe
Q 018314           14 KPAGARGYSSES------VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM   85 (358)
Q Consensus        14 ~~~~~~~~~~~~------~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~   85 (358)
                      -|.|+..+.+|+      -+.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++.....  ++....
T Consensus        12 ~~~~~~g~~~m~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~   87 (276)
T 3r1i_A           12 LEAQTQGPGSMSVLDLFDLSGKRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGG--KALPIR   87 (276)
T ss_dssp             -----------CGGGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTC--CCEEEE
T ss_pred             eeccccCCCCcccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEE
Confidence            455555555544      2346899999999999999999999987  899999876  3333444443221  222221


Q ss_pred             -cCCc---cccccC-------CCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEe
Q 018314           86 -GNDQ---LGQALE-------DSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus        86 -~~~d---~~~al~-------~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                       +-+|   .++.++       ..|++|..||.....   ..+..   ..+..|    ..+.+.+.+.+.+....+.||++
T Consensus        88 ~Dl~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~i  167 (276)
T 3r1i_A           88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITT  167 (276)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred             cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence             1122   222333       789999999975322   22322   234445    34556666666666555777766


Q ss_pred             eCC
Q 018314          145 SNP  147 (358)
Q Consensus       145 tNP  147 (358)
                      +..
T Consensus       168 sS~  170 (276)
T 3r1i_A          168 ASM  170 (276)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            543

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.33  E-value=0.00057  Score=64.03  Aligned_cols=76  Identities=17%  Similarity=0.337  Sum_probs=54.5

Q ss_pred             CceEEEEc-CCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiG-A~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ++||+||| + |.+|..++..|...++  +|.++|+++..                      +..+++++||+||++.-.
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp~   75 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVPI   75 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSCG
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCCH
Confidence            45899999 7 9999999999998887  89999976420                      234678999999998621


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMI  144 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~  144 (358)
                          .            .+.++.+.+..+. |+++++.+
T Consensus        76 ----~------------~~~~vl~~l~~~l~~~~iv~~~   98 (298)
T 2pv7_A           76 ----N------------LTLETIERLKPYLTENMLLADL   98 (298)
T ss_dssp             ----G------------GHHHHHHHHGGGCCTTSEEEEC
T ss_pred             ----H------------HHHHHHHHHHhhcCCCcEEEEC
Confidence                1            1445555665554 56655544

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.32  E-value=0.0012  Score=59.09  Aligned_cols=100  Identities=16%  Similarity=0.161  Sum_probs=63.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV  100 (358)
                      ..+++|.|+||+|++|+.++..|+..+ .  +|+++++++..     +.... ...+.....    .+++.++++++|+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~-----~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~D~v   92 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAK-----IHKPY-PTNSQIIMGDVLNHAALKQAMQGQDIV   92 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGG-----SCSSC-CTTEEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhh-----hcccc-cCCcEEEEecCCCHHHHHHHhcCCCEE
Confidence            446789999999999999999999888 5  89999987521     11111 113333221    12445678999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |.++|.+.      .+      ...+.+.+.+++.... .||++|.
T Consensus        93 v~~a~~~~------~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           93 YANLTGED------LD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EEECCSTT------HH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EEcCCCCc------hh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            99886421      11      1244667777766533 4555544

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=97.32  E-value=0.00075  Score=64.91  Aligned_cols=118  Identities=15%  Similarity=0.116  Sum_probs=72.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH------------------HHHHhhcCCCCccEEEEec-
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG------------------VAADVGHINTRSEVAGYMG-   86 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~------------------~~~dl~~~~~~~~v~~~~~-   86 (358)
                      .++++|.|+||+|++|++++..|+..+.  +|+++|......                  ...++.+.. ..++....+ 
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~D   85 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGD   85 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESC
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECC
Confidence            3578999999999999999999998886  899998753111                  111111000 112333221 


Q ss_pred             CC---ccccccCC--CCEEEEcCCCCCCC--CCCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           87 ND---QLGQALED--SDVVIIPAGVPRKP--GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        87 ~~---d~~~al~~--aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      -.   ++.+++++  +|+||++||.....  ..+.   ...+..|+.-...+.+.+.+......+|.+|.
T Consensus        86 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS  155 (404)
T 1i24_A           86 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGT  155 (404)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            12   23345666  99999999864311  1121   23567899999999999988865335555543

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=97.32  E-value=0.0013  Score=61.00  Aligned_cols=113  Identities=11%  Similarity=-0.014  Sum_probs=68.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCc----HHHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT----PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~----~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (358)
                      +||.|+||+|++|++++..|+..+.  +|+..++ +..    .....++...  ..+++...    +..++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            5899999999999999999999887  8888776 321    1111111100  01222221    12345567889999


Q ss_pred             EEEcCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          100 VIIPAGVPRKPGMT-RDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       100 VIi~ag~~~~~g~~-r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ||++|+.......+ ..+.+..|+.-...+.+.+.+...-..+|.+|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99999642111111 23477889999999999888762122445443

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=97.31  E-value=0.00017  Score=65.81  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi~a  104 (358)
                      +||.|+||+|++|+.++..|...+.  +|+++|.+....    +.     ..++....    .+++.+++++.|+||++|
T Consensus         3 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~----~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a   71 (267)
T 3ay3_A            3 NRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGA----AE-----AHEEIVACDLADAQAVHDLVKDCDGIIHLG   71 (267)
T ss_dssp             EEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCC----CC-----TTEEECCCCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCccc----cC-----CCccEEEccCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999988875  899999865210    00     11222211    123456788999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |..  ...+....+..|+.-...+.+.+.+.... .+|.+|
T Consensus        72 ~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~S  109 (267)
T 3ay3_A           72 GVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFAS  109 (267)
T ss_dssp             SCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            865  23344667788999999999988876533 445444

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.31  E-value=0.00022  Score=66.01  Aligned_cols=105  Identities=14%  Similarity=0.065  Sum_probs=67.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~a  104 (358)
                      +++|.|+||+|++|+.++..|...+ .  +|+.++.+.......++....  ..+....  +.+++.++++++|+||+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~--~~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQG--AEVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCC--CEEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            4689999999999999999888866 5  899999876322222333211  1111111  1123456889999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM  143 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv  143 (358)
                      +.....      ....|....+.+++.+++.+.. .++.
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~  112 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVY  112 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEE
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEE
Confidence            642111      1245677788888888877643 3443

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.30  E-value=0.0014  Score=59.71  Aligned_cols=117  Identities=20%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.......++.... +-+|   +.+++       
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            7 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999987  8999998752  22223343221112343332 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHH----HHHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAG----IVKDLCSAIAKYC--PNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~----i~~~i~~~i~~~~--p~a~iiv~tNP~  148 (358)
                      ...|++|..||...  ...-...+..|+.    ..+.+.+.+.+..  +.+.||+++...
T Consensus        85 g~id~lv~~Ag~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~  142 (267)
T 2gdz_A           85 GRLDILVNNAGVNN--EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  142 (267)
T ss_dssp             SCCCEEEECCCCCC--SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCCCEEEECCCCCC--hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCcc
Confidence            24699999998653  2233455666655    6677777776653  256777776543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.30  E-value=0.00031  Score=67.85  Aligned_cols=93  Identities=15%  Similarity=0.240  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCC---CEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDS---DVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a---DiVIi~a  104 (358)
                      +|||+|||. |.||..++..|+..++  +|++||+++.  ...++....    +..   .+++.++++++   |+||++.
T Consensus        22 ~mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~--~~~~l~~~g----~~~---~~s~~e~~~~a~~~DvVi~~v   89 (358)
T 4e21_A           22 SMQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVN--AVQALEREG----IAG---ARSIEEFCAKLVKPRVVWLMV   89 (358)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTT----CBC---CSSHHHHHHHSCSSCEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHH--HHHHHHHCC----CEE---eCCHHHHHhcCCCCCEEEEeC
Confidence            479999997 9999999999999987  9999998752  222333322    121   24566777888   9999985


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                      ..    +            .++++.+.+.... ++.+||..+|-.
T Consensus        90 p~----~------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           90 PA----A------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             CG----G------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             CH----H------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            21    1            2334445565554 567766665543

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.29  E-value=0.0014  Score=63.89  Aligned_cols=114  Identities=17%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-----HHHHHhhcC-------CCCccEEEEec----CCc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAADVGHI-------NTRSEVAGYMG----NDQ   89 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-----~~~~dl~~~-------~~~~~v~~~~~----~~d   89 (358)
                      .++++|.|+||+|++|+.++..|...+.  +|+++++++..     .....+...       ....++....+    ..+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~  144 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD  144 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence            4567999999999999999999976665  89999987631     111111110       00113333321    122


Q ss_pred             cccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           90 LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        90 ~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +. ++.++|+||.+|+.... .....+.+..|+.....+++...+ . ...+|.+|
T Consensus       145 l~-~~~~~d~Vih~A~~~~~-~~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          145 VV-LPENMDTIIHAGARTDH-FGDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             CC-CcCCCCEEEECCcccCC-CCCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence            22 57899999999986532 233456778899999999999988 3 33445443

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.29  E-value=0.0029  Score=51.19  Aligned_cols=71  Identities=21%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cc-cccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~al~~aDiVIi~  103 (358)
                      .|||+|+|+ |.+|..++..|...+.  +++++|.++..  ...+.... ...... .+..+   +. ..++++|+||++
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~--~~~~~~~~-~~~~~~-~d~~~~~~l~~~~~~~~d~vi~~   76 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVIN-GDCTKIKTLEDAGIEDADMYIAV   76 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEEE-SCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHhc-CcEEEE-cCCCCHHHHHHcCcccCCEEEEe
Confidence            479999998 9999999999998886  89999986522  12222110 111111 11111   11 237899999998


Q ss_pred             CC
Q 018314          104 AG  105 (358)
Q Consensus       104 ag  105 (358)
                      .+
T Consensus        77 ~~   78 (140)
T 1lss_A           77 TG   78 (140)
T ss_dssp             CS
T ss_pred             eC
Confidence            63

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.28  E-value=0.0016  Score=64.44  Aligned_cols=71  Identities=23%  Similarity=0.309  Sum_probs=50.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCC----------------CccEEEEecCCcc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINT----------------RSEVAGYMGNDQL   90 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~----------------~~~v~~~~~~~d~   90 (358)
                      ...|++|||. |.||..+|..|+..|+  +|+.||+++.  .+..|.....                ..+++.+   +| 
T Consensus        10 ~~~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~--kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~t---td-   80 (431)
T 3ojo_A           10 HGSKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQ--TIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVS---TT-   80 (431)
T ss_dssp             --CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEE---SS-
T ss_pred             cCCccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHH--HHHHHHCCCCCcCCCCHHHHHHhhcccCceEEe---Cc-
Confidence            3569999997 9999999999999998  9999999862  2223332210                1245542   33 


Q ss_pred             ccccCCCCEEEEcCCCCCC
Q 018314           91 GQALEDSDVVIIPAGVPRK  109 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~  109 (358)
                         +++||+||++.+.|..
T Consensus        81 ---~~~aDvvii~VpTp~~   96 (431)
T 3ojo_A           81 ---PEASDVFIIAVPTPNN   96 (431)
T ss_dssp             ---CCCCSEEEECCCCCBC
T ss_pred             ---hhhCCEEEEEeCCCcc
Confidence               4689999999887754

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.27  E-value=0.0032  Score=56.86  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcE-EEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc----cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-LALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----GQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-i~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~----~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  + |++.|+++......++.......++.... +-+|.    .+++      
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            346899999999999999999999886  5 89999876322223333221112343332 11221    1122      


Q ss_pred             -CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHHhhC--CCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKPGMTRDDLFNINAGIV----KDLCSAIAKYC--PNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~----~~i~~~i~~~~--p~a~iiv~tNP  147 (358)
                       .+.|+||..||...  ...-...+..|+.-.    +.+.+.+.+..  +.+.||+++..
T Consensus        82 ~g~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           82 LKTVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             HSCCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             cCCCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence             37899999998642  233445566665544    44444443332  25677777654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.26  E-value=0.00084  Score=67.31  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccC---CCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVIi~  103 (358)
                      |||+|||+ |.||..++..|+..++  +|.+||+++..  ....+.........+..   ++|+.++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~---~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKA---FETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEE---CSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeEE---ECCHHHHHhcccCCCEEEEe
Confidence            68999997 9999999999999887  89999986522  11111110000123443   245555555   59999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d  149 (358)
                      ...    +.           .++++.+.+..+. |+.++|..+|-..
T Consensus        76 Vp~----~~-----------~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           76 VQA----GA-----------ATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             CCC----SH-----------HHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             cCC----hH-----------HHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            622    11           1233334454444 5677777777764

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=97.26  E-value=0.00031  Score=64.77  Aligned_cols=99  Identities=15%  Similarity=0.131  Sum_probs=68.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC--CCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiVIi~ag~  106 (358)
                      |||.|+||+|++|++++..|. .+.  +|+.+|.+..      ....    ++.   +.+++.+++++  +|+||++|+.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~------~~~~----D~~---d~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSK------EFCG----DFS---NPKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCS------SSCC----CTT---CHHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEeccccc------cccc----cCC---CHHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999888 665  8999997641      0011    111   11234456665  9999999986


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...  ...+..+.+..|+.....+.+.+++...  .+|.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1234566788899999999999887654  455554

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.25  E-value=0.00044  Score=56.36  Aligned_cols=99  Identities=13%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cccc-cCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-LEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-l~~aDiVIi~  103 (358)
                      +++|.|+|+ |.+|..++..|...+.  +++++|.++.  ....+....  .... ..+..|   +.++ +.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~--~~~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            458999998 9999999999998886  7999998642  222222211  1111 111122   2232 6789999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .+.+          ...|..    ++..+++.+|+.++...+||.
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~  108 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYY  108 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHH
Confidence            7542          123332    344455567774444455554

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.25  E-value=0.0017  Score=59.89  Aligned_cols=114  Identities=16%  Similarity=0.177  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++...   .++.... +-+|   ..++++       
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999987  8999998752  2223333321   1233221 1112   222333       


Q ss_pred             CCCEEEEcCCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ..|++|..||....  +  ..+.   ...+..|+.    +.+.+.+.+.+......||+++.-
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~  159 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSV  159 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            45999999997432  2  1222   233445543    456667777665543266666543

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.25  E-value=0.00038  Score=63.96  Aligned_cols=100  Identities=14%  Similarity=0.047  Sum_probs=66.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi~  103 (358)
                      |||.|+||+|++|+.++..|... +.  +|++++++....  .++...    .++...+    .+++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~--~~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKV--PDDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGS--CGGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHH--HHhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999988876 55  788988765211  112211    2222211    12355689999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++....        ...|+...+.+++.+++.+..- ++.+|
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~-iv~~S  105 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVAH-IIFIG  105 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCCE-EEEEc
Confidence            875321        1357778888899888876443 44343

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.24  E-value=0.0017  Score=65.12  Aligned_cols=98  Identities=16%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-CCCCccEEEEecCCcccccc---CCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL---EDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al---~~aDiVIi~a  104 (358)
                      +||+|||+ |.||.+++..|+..++  +|.+||+++....  ++.. ......+..   ++|+.+++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~--~l~~~~~~g~gi~~---~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVD--DFLANEAKGTKVLG---AHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHH--HHHHTTTTTSSCEE---CSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHhccccCCCeEE---eCCHHHHHhhccCCCEEEEeC
Confidence            68999997 9999999999999887  8999998763222  2221 100012333   24555554   5999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d  149 (358)
                      ..    +.           .++++.+.+..+. |+.+||..+|...
T Consensus        75 p~----~~-----------~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 KA----GQ-----------AVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             CT----TH-----------HHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             CC----hH-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            22    11           1233334444444 5667777777654

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=97.24  E-value=0.00021  Score=66.33  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=89.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++||.|+||+|++|++++..|...+.  +|+.+|.....  .....+.+......++.      ...++.++|+||.+|
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLEL------EERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGGC------CHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCeeE------EeCccccCCEEEECC
Confidence            367999999999999999999999886  89999876421  00001111000111221      123455999999999


Q ss_pred             CCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC------C-cchHHHHHHHHHhCCCCCCceEeecc
Q 018314          105 GVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV------N-STVPIAAEVFKKAGTYNEKKLFGVTT  175 (358)
Q Consensus       105 g~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~------d-~~t~~~~~~~~~sg~~~~~kviG~t~  175 (358)
                      +.....  .....+.+. |+...+.+.+.+.+.+..- +|.+|...      + .++.       ... ..+...+|.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~-~v~~SS~~v~~~~~~~~~~E-------~~~-~~p~~~Y~~sK  147 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPK-VVVGSTCEVYGQADTLPTPE-------DSP-LSPRSPYAASK  147 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCE-EEEEEEGGGGCSCSSSSBCT-------TSC-CCCCSHHHHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCe-EEEecCHHHhCCCCCCCCCC-------CCC-CCCCChhHHHH
Confidence            864310  111122345 9999999999999887443 44443211      0 1110       111 23334444444


Q ss_pred             ccHHHHHHHHHHHcCC-CCCCCc-eEEEeec
Q 018314          176 LDVVRAKTFYAGKANV-NVAEVN-VPVVGGH  204 (358)
Q Consensus       176 lds~R~~~~la~~l~v-~~~~v~-~~v~G~h  204 (358)
                      ....++-..+++..++ +..-++ ..++|..
T Consensus       148 ~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~  178 (321)
T 3vps_A          148 VGLEMVAGAHQRASVAPEVGIVRFFNVYGPG  178 (321)
T ss_dssp             HHHHHHHHHHHHSSSSCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHcCCCceEEEEeccccCcC
Confidence            4444555555555565 443344 3567754

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=97.24  E-value=0.00081  Score=60.20  Aligned_cols=103  Identities=18%  Similarity=0.166  Sum_probs=66.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH---HHHHhhcCCCCccEEEEecCCcccccc----CCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al----~~aDiVI  101 (358)
                      ++|.|+||+|++|++++..|+..+.  +|++.|++....   ...|+.+.            .++.+++    .+.|+||
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~vi   67 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGLV   67 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEEE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEEE
Confidence            4799999999999999999999886  899999865210   11122211            1122333    3899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeC
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISN  146 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tN  146 (358)
                      .+||.... .......+..|+.-...+.+.+.+.   ...+.+|+++.
T Consensus        68 ~~Ag~~~~-~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           68 CCAGVGVT-AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             ECCCCCTT-SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             ECCCCCCc-chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            99987542 2234566777776666666655544   22355665554

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.24  E-value=0.0016  Score=60.82  Aligned_cols=117  Identities=18%  Similarity=0.201  Sum_probs=72.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.+       
T Consensus        31 gk~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           31 GRAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            45799999999999999999999987  899999876  233334444322  1233322 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ...|++|..||.....   ..+.   ...+..|    ..+.+.+.+.+.+..+.+.|++++...
T Consensus       107 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  170 (301)
T 3tjr_A          107 GGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFA  170 (301)
T ss_dssp             SSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchh
Confidence            2789999999975321   1222   2344444    445566666677666567777776543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.23  E-value=0.0032  Score=52.68  Aligned_cols=72  Identities=14%  Similarity=0.205  Sum_probs=46.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhh-cCCCCccEEEEecCCc---cccc-cCCCCEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVG-HINTRSEVAGYMGNDQ---LGQA-LEDSDVV  100 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~-~~~~~~~v~~~~~~~d---~~~a-l~~aDiV  100 (358)
                      ...++|.|+|+ |.+|..++..|...+.  +|+++|.++...  ..+. ...  ..+. .....+   +.++ +.++|+|
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~--~~~~~~~g--~~~~-~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAF--HRLNSEFS--GFTV-VGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGG--GGSCTTCC--SEEE-ESCTTSHHHHHTTTGGGCSEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHH--HHHHhcCC--CcEE-EecCCCHHHHHHcCcccCCEE
Confidence            45679999997 9999999999998886  899999875221  1122 111  1111 111112   2233 7889999


Q ss_pred             EEcCC
Q 018314          101 IIPAG  105 (358)
Q Consensus       101 Ii~ag  105 (358)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99874

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=97.23  E-value=0.00045  Score=65.03  Aligned_cols=113  Identities=20%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCcccccc-CC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQAL-ED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al-~~   96 (358)
                      ++|+|.|+||+|++|++++..|...+.     ..+|+++|.+......  .    ...++.....    ..++.+++ .+
T Consensus        13 ~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~~~~~   86 (342)
T 2hrz_A           13 QGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKLVEAR   86 (342)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHHHHTC
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHHHhcC
Confidence            457999999999999999999888771     0289999986521100  0    1123333321    12233456 48


Q ss_pred             CCEEEEcCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEee
Q 018314           97 SDVVIIPAGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMIS  145 (358)
Q Consensus        97 aDiVIi~ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~iiv~t  145 (358)
                      .|+||++||..... ..+..+.+..|+.-...+.+.+.+..    +...+|.+|
T Consensus        87 ~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           87 PDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             CSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            99999999864310 12334566788888888888887765    234455444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.0028  Score=58.27  Aligned_cols=161  Identities=16%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-   95 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-   95 (358)
                      +.-+.+++.|+||+|++|..++..|+..+.  +|++.|.+.   ......++....  .++.... +-+|   ..+.++ 
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~  102 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRE  102 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHH
Confidence            344556899999999999999999999987  899988765   223333443322  1233222 1122   222333 


Q ss_pred             ------CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           96 ------DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        96 ------~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                            ..|++|..||.....   ..+   -...+..|+.-...+.+.+.++- ..+.||+++.......          
T Consensus       103 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~----------  172 (271)
T 3v2g_A          103 TVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELV----------  172 (271)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCC----------
T ss_pred             HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccC----------
Confidence                  789999999975322   122   23345667665555555555442 3567777765432111          


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + ++..-.++.+......+-+.+++.++  +..|++..+
T Consensus       173 ~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  208 (271)
T 3v2g_A          173 P-WPGISLYSASKAALAGLTKGLARDLG--PRGITVNIV  208 (271)
T ss_dssp             C-STTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             C-CCCchHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            0 22222233332223345566676663  445655444

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.23  E-value=0.0012  Score=64.37  Aligned_cols=97  Identities=18%  Similarity=0.186  Sum_probs=57.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCc-HHHHHH-hhcCC------CCcc--EE--EE--ecCCcccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANT-PGVAAD-VGHIN------TRSE--VA--GY--MGNDQLGQ   92 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~-~~~~~d-l~~~~------~~~~--v~--~~--~~~~d~~~   92 (358)
                      +|||+|||+ |.+|..++..|+.. +.  +|.++|..+. ...... +....      ....  +.  ..  ..++|+.+
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEI   78 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHH
Confidence            479999998 99999999999874 76  8999993321 112222 22111      0001  11  00  01245667


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNM  143 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv  143 (358)
                      ++++||+||++...+                ..+++++.+..+. |+.+|+.
T Consensus        79 a~~~aD~Vilav~~~----------------~~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           79 AISGADVVILTVPAF----------------AHEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHTTCSEEEECSCGG----------------GHHHHHHHHTTTCCTTCEEEE
T ss_pred             HhCCCCEEEEeCchH----------------HHHHHHHHHHhhCCCCcEEEE
Confidence            789999999986321                1245666666665 4664443

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.22  E-value=0.0026  Score=58.56  Aligned_cols=118  Identities=16%  Similarity=0.185  Sum_probs=70.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      .-+.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....   ++.... +-+|   +.+++    
T Consensus        26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~  100 (276)
T 2b4q_A           26 SLAGRIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALG  100 (276)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHH
Confidence            33456899999999999999999999886  8999998752  22333343211   233221 1112   11222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCC---CeEEEEeeCC
Q 018314           95 ---EDSDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCP---NAIVNMISNP  147 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p---~a~iiv~tNP  147 (358)
                         ...|++|..||.....   ..+   -...+..|+.    +.+.+.+.+++...   .+.||+++.-
T Consensus       101 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~  169 (276)
T 2b4q_A          101 ELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSV  169 (276)
T ss_dssp             HHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCG
T ss_pred             HhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCH
Confidence               3789999999864321   122   2334555544    44666666666543   1667766653

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.22  E-value=0.00037  Score=66.67  Aligned_cols=116  Identities=9%  Similarity=-0.025  Sum_probs=71.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCC---CCccEEEEec-CC---ccccccCC--
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHIN---TRSEVAGYMG-ND---QLGQALED--   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~---~~~~v~~~~~-~~---d~~~al~~--   96 (358)
                      ++|.|+||+|++|++++..|+..+.  +|+++|.+...   ....++....   ....+..... -.   ++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            5899999999999999999998886  89999986421   1111111000   0123333321 12   22344554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCC--CeEEEEeeC
Q 018314           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP--NAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p--~a~iiv~tN  146 (358)
                      .|+||.+||.....  ..+..+.+..|+.-...+.+.+.+...  ...+|.+|.
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS  156 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAST  156 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecc
Confidence            59999999864311  123345677888888899998887753  145565543

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.21  E-value=0.00087  Score=60.29  Aligned_cols=156  Identities=17%  Similarity=0.198  Sum_probs=86.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++  ......++....  .++.... +-+|   .++.+      
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAE   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  223333343322  2333322 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ..-|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|+++....           ..+
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~~-----------~~~  147 (247)
T 3lyl_A           80 NLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR-WGRIISIGSVVG-----------SAG  147 (247)
T ss_dssp             TCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-----------HHC
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcchhh-----------ccC
Confidence             2579999999975322   1222   234455544    3445555555443 466776665321           122


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|....++.+......+-+.+++.++  +..|++.++
T Consensus       148 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          148 -NPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence             44444444443323445666676653  445555444

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=97.21  E-value=0.00087  Score=63.11  Aligned_cols=113  Identities=19%  Similarity=0.077  Sum_probs=71.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--------HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--------PGVAADVGHINTRSEVAGYM-GND---QLGQALE-   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--------~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-   95 (358)
                      ++|.|+||+|++|++++..|+..+.  +|+++|....        .....++.... ..++.... +-.   ++.++++ 
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~   79 (348)
T 1ek6_A            3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHHh
Confidence            6899999999999999999998886  8999986421        11222222110 01222221 112   2334566 


Q ss_pred             -CCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           96 -DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                       ++|+||++||.....  .....+.+..|+.....+.+.+++.... .+|.+|
T Consensus        80 ~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             cCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence             899999999864211  1234567788999999999988876544 444444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=97.20  E-value=0.0019  Score=61.97  Aligned_cols=115  Identities=16%  Similarity=0.042  Sum_probs=72.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHH-hCCCCcEEEEEecCCc----------HHHHHH-hhcCCC---Ccc---EEEEec-CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIANT----------PGVAAD-VGHINT---RSE---VAGYMG-ND   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~-~~~~~~ei~L~D~~~~----------~~~~~d-l~~~~~---~~~---v~~~~~-~~   88 (358)
                      .|+|.|+||+|++|++++..|+ ..+.  +|+++|....          .....+ +.+...   ...   +..... -.
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~   79 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCC
Confidence            3699999999999999999999 8886  8999997542          111111 111100   012   333321 12


Q ss_pred             ---ccccccC--C-CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           89 ---QLGQALE--D-SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        89 ---d~~~al~--~-aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                         ++.++++  + .|+||++||.....  .....+.+..|+.....+.+.+.+....- +|.+|
T Consensus        80 d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~-iv~~S  143 (397)
T 1gy8_A           80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDK-IIFSS  143 (397)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEE
T ss_pred             CHHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCE-EEEEC
Confidence               2334555  6 99999999864311  12345677889999999999988775443 44443

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.20  E-value=0.00041  Score=64.76  Aligned_cols=91  Identities=15%  Similarity=0.143  Sum_probs=58.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HH-HHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PG-VAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~-~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~a  104 (358)
                      +||.|+||+|++|++++..|...+.  +|+.++++.. .. ...++....  ..+....  +.+++.++++++|+||.++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~--v~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLG--AIIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTT--CEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCC--CEEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            3899999999999999999998886  7889988752 22 122232211  1111111  1134567889999999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      +...             ....+.+++.+++.+
T Consensus        88 ~~~~-------------~~~~~~l~~aa~~~g  106 (318)
T 2r6j_A           88 AFPQ-------------ILDQFKILEAIKVAG  106 (318)
T ss_dssp             CGGG-------------STTHHHHHHHHHHHC
T ss_pred             chhh-------------hHHHHHHHHHHHhcC
Confidence            7532             222345566666665

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.19  E-value=0.00032  Score=66.51  Aligned_cols=90  Identities=19%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHH---HhhcCCCCccEEEEec----CCccccccC--C
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAA---DVGHINTRSEVAGYMG----NDQLGQALE--D   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~---dl~~~~~~~~v~~~~~----~~d~~~al~--~   96 (358)
                      ++||.|+||+|++|+.++..|...+.  +|++++++.  ......   ++...    .++...+    .+++.++++  +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~----~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDK----GAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHT----TCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhC----CcEEEEeecCCHHHHHHHHhhCC
Confidence            46899999999999999999998885  899999865  222221   22221    1222211    123456778  9


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      +|+||++++..             |+...+.+++.+++.+
T Consensus        84 ~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           84 IDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             CCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            99999998752             5666677888888776

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.18  E-value=0.0007  Score=61.65  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=70.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .+++.|+||+|++|.+++..|+..+.  +|++.|.+..  .....++..     ++.... +-+|   ..+.++      
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   80 (259)
T 4e6p_A            8 GKSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHA   80 (259)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  222333321     222221 1122   222333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                       +.|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+..+.+.||+++...
T Consensus        81 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  144 (259)
T 4e6p_A           81 GGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQA  144 (259)
T ss_dssp             SSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChh
Confidence             899999999974321   1222   23344554    45566666666666567777776543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.18  E-value=0.0009  Score=60.78  Aligned_cols=154  Identities=13%  Similarity=0.099  Sum_probs=82.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.+++.|+||+|++|.+++..|+..+.  +|++.|.++.  .....++.     .++.... +-+|   ..++++     
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELG-----AAVRFRNADVTNEADATAALAFAKQE   78 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998762  22222221     1222221 1112   222333     


Q ss_pred             --CCCEEEEcCCCCCCC-------CCCH---HHHHHHHHH----HHHHHHHHHHhh-----CCCeEEEEeeCCCCcchHH
Q 018314           96 --DSDVVIIPAGVPRKP-------GMTR---DDLFNINAG----IVKDLCSAIAKY-----CPNAIVNMISNPVNSTVPI  154 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~-------g~~r---~~~~~~N~~----i~~~i~~~i~~~-----~p~a~iiv~tNP~d~~t~~  154 (358)
                        ..|++|..||.....       ..+.   ...+..|+.    +.+.+.+.+.+.     ...+.||+++....     
T Consensus        79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~-----  153 (257)
T 3tpc_A           79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAA-----  153 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH-----
T ss_pred             cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhh-----
Confidence              899999999864321       1222   234455544    445555555543     23566776655321     


Q ss_pred             HHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       155 ~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                            ..+ .+..-.++.+......+-+.+++.++  ++.|++..+
T Consensus       154 ------~~~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  191 (257)
T 3tpc_A          154 ------FDG-QIGQAAYAASKGGVAALTLPAARELA--RFGIRVVTI  191 (257)
T ss_dssp             ------HHC-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ------ccC-CCCCcchHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence                  122 33333344433223345566666653  444554443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.18  E-value=0.00069  Score=66.70  Aligned_cols=139  Identities=14%  Similarity=0.170  Sum_probs=87.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---ccc-ccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-ALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-al~~aDiVIi  102 (358)
                      ..++|.|+|+ |.+|..++..|...++  +++++|.++..  +..+...... -+.+  +.++   +.+ .+.+||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~--v~~~~~~g~~-vi~G--Dat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDH--IETLRKFGMK-VFYG--DATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHH--HHHHHHTTCC-CEES--CTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHhCCCe-EEEc--CCCCHHHHHhcCCCccCEEEE
Confidence            3468999998 9999999999999887  89999987621  2222222211 1211  1122   223 3789999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHH
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      +.+               +-..-..++..+++.+|+..||+-++-.+-..     .++..|   -+.|+--+...+.++-
T Consensus        75 ~~~---------------~~~~n~~i~~~ar~~~p~~~Iiara~~~~~~~-----~L~~~G---ad~Vi~~~~~~a~~la  131 (413)
T 3l9w_A           75 AID---------------DPQTNLQLTEMVKEHFPHLQIIARARDVDHYI-----RLRQAG---VEKPERETFEGALKTG  131 (413)
T ss_dssp             CCS---------------SHHHHHHHHHHHHHHCTTCEEEEEESSHHHHH-----HHHHTT---CSSCEETTHHHHHHHH
T ss_pred             CCC---------------ChHHHHHHHHHHHHhCCCCeEEEEECCHHHHH-----HHHHCC---CCEEECccHHHHHHHH
Confidence            863               12334456667788899976666554332221     244555   4567665555566776


Q ss_pred             HHHHHHcCCCCCCC
Q 018314          183 TFYAGKANVNVAEV  196 (358)
Q Consensus       183 ~~la~~l~v~~~~v  196 (358)
                      ..+-..+|+++..+
T Consensus       132 ~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          132 RLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHTTCCHHHH
T ss_pred             HHHHHHcCCCHHHH
Confidence            66677888887665

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.17  E-value=0.00027  Score=66.00  Aligned_cols=107  Identities=12%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC--CCCccEEEEecCCcccccc-CCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--NTRSEVAGYMGNDQLGQAL-EDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~--~~~~~v~~~~~~~d~~~al-~~aDiVIi~ag  105 (358)
                      |||+|||+ |.+|..++..|...+.  +|.++|+++..   .++...  ..+..+..     +..+++ +++|+||++.-
T Consensus         3 mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~---~~~~~~~g~~~~~~~~-----~~~~~~~~~~D~vilavk   71 (294)
T 3g17_A            3 LSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKT---ITYYTVPHAPAQDIVV-----KGYEDVTNTFDVIIIAVK   71 (294)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEE---EEEESSTTSCCEEEEE-----EEGGGCCSCEEEEEECSC
T ss_pred             cEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCc---EEEEecCCeeccceec-----CchHhcCCCCCEEEEeCC
Confidence            69999998 9999999999998876  89999987511   011111  11112221     223455 89999999852


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                          +.            -++++.+.++.+- |+..|+.+.|-.+....           +|.+++++-
T Consensus        72 ----~~------------~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----------~~~~~v~~g  113 (294)
T 3g17_A           72 ----TH------------QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----------IPFKNVCQA  113 (294)
T ss_dssp             ----GG------------GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----------CCCSCEEEC
T ss_pred             ----cc------------CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----------CCCCcEEEE
Confidence                11            1233344444443 67788889999886541           566777754

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.16  E-value=0.00081  Score=60.86  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (358)
                      ++++|.|+||+|++|..++..|+. .+.  +|++.+++.  ......++....  .++.... +-+|   +.++++    
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   78 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRK   78 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999998 786  899999865  222333443322  1222221 1122   222333    


Q ss_pred             ---CCCEEEEcCCCCCCCC--CC----HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           96 ---DSDVVIIPAGVPRKPG--MT----RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        96 ---~aDiVIi~ag~~~~~g--~~----r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                         +.|+||.+||......  .+    -...+..|+.-...+.+.+.++. +.+.||+++.
T Consensus        79 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           79 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence               7899999998653221  11    23456778777777777777664 3456666654

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.0019  Score=65.00  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhc-CCCCccEEEEecCCccccccCC---CCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al~~---aDiVIi~a  104 (358)
                      .||+|||+ |.||.+++..|+..++  +|++||+++...  .++.. ......+..   ++|+.+++++   +|+||++.
T Consensus        11 ~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~--~~l~~~~~~~~gi~~---~~s~~e~v~~l~~aDvVil~V   82 (497)
T 2p4q_A           11 ADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKV--DHFLANEAKGKSIIG---ATSIEDFISKLKRPRKVMLLV   82 (497)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHH--HHHHHTTTTTSSEEC---CSSHHHHHHTSCSSCEEEECC
T ss_pred             CCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHcccccCCCeEE---eCCHHHHHhcCCCCCEEEEEc
Confidence            48999998 9999999999999987  899999876322  22222 100013432   3455666666   99999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVN  149 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d  149 (358)
                      -.    +           ..++++++.+..+. |+.+||..+|-..
T Consensus        83 p~----~-----------~~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           83 KA----G-----------APVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CS----S-----------HHHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             CC----h-----------HHHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            21    1           12344445666655 5677777777654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.15  E-value=0.0015  Score=59.13  Aligned_cols=154  Identities=15%  Similarity=0.162  Sum_probs=88.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---cccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++.  .....++.     .++.... +-+   +..+.+      
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIG-----KKARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22223331     1222211 111   122222      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRK-P--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ...|++|..||.... +  ..+.   ...+..|+    .+.+.+.+.+++..+.+.||+++....           ..+
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~  146 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTF-----------FAG  146 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH-----------HHT
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhh-----------ccC
Confidence             378999999996432 1  2222   23445554    445666666877766677777765321           122


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+...-..+-+.+|..++  +..|++..+
T Consensus       147 -~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          147 -TPNMAAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence             34333344433223345666777653  455655444

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.15  E-value=0.0019  Score=58.66  Aligned_cols=82  Identities=15%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cC---CccccccC---
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GN---DQLGQALE---   95 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~---   95 (358)
                      ..++++|.|+||+|++|..++..|+..+. ..+|++.|.+.. .....++....  .++.... +-   +++.++++   
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~   95 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIE   95 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccC--CceEEEEecCCChHHHHHHHHHHH
Confidence            34566899999999999999999998871 128999998762 11223332211  1333322 11   22223333   


Q ss_pred             ------CCCEEEEcCCCCC
Q 018314           96 ------DSDVVIIPAGVPR  108 (358)
Q Consensus        96 ------~aDiVIi~ag~~~  108 (358)
                            ..|+||.+||...
T Consensus        96 ~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           96 GVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHGGGCCSEEEECCCCCC
T ss_pred             HhcCCCCccEEEECCCcCC
Confidence                  6999999999754

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.15  E-value=0.0041  Score=56.52  Aligned_cols=159  Identities=11%  Similarity=0.079  Sum_probs=88.9

Q ss_pred             CCceEEEEcCCCC--hHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~--vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.+++.|+||+|.  +|..++..|+..+.  +|++.|.++ ......++.......++..+. +-+|   .++.+     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   83 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKE   83 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHH
Confidence            4568999999876  99999999999987  899999875 223333333221111233221 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 --EDSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                        ...|++|..||....     +  ..+.   ...+..|+.-...+.+.+..+- +.+.||+++......          
T Consensus        84 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----------  153 (266)
T 3oig_A           84 QVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL----------  153 (266)
T ss_dssp             HHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS----------
T ss_pred             HhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc----------
Confidence              267999999987531     1  1232   3345667666666666666554 357777776543211          


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       + .|..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       154 -~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (266)
T 3oig_A          154 -V-MPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSI  189 (266)
T ss_dssp             -C-CTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -c-CCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             1 23223333332223345566666653  445655444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.14  E-value=0.0016  Score=53.40  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=45.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc---cc-ccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL---GQ-ALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~---~~-al~~aDiVIi~  103 (358)
                      +++|.|+|+ |.+|+.++..|...+.  +++++|.++..  ..++.+...  .+... +.+|.   .+ .+.++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~--~~~~~~~~~--~~~~g-d~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEK--IELLEDEGF--DAVIA-DPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTC--EEEEC-CTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCCC--cEEEC-CCCCHHHHHhCCcccCCEEEEe
Confidence            568999998 9999999999999887  89999987522  222222221  11111 11221   11 25789999998


Q ss_pred             CC
Q 018314          104 AG  105 (358)
Q Consensus       104 ag  105 (358)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.14  E-value=0.00086  Score=61.17  Aligned_cols=64  Identities=17%  Similarity=0.248  Sum_probs=45.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|..++..|...++  +|+++|.........++....    +.     +++.+++++||+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            58999997 9999999999998887  899988732222222333222    11     12356789999999986

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.14  E-value=0.00035  Score=58.03  Aligned_cols=93  Identities=15%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .+||+|||+ |.+|..++..|...+.  +|.++|++...  ..+.++.     ..+..   .+++.++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~~---~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYVL---INDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEEE---CSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceEe---ecCHHHHhcCCCEEEEeCC
Confidence            569999997 9999999988887665  59999987522  2233322     12222   3456778899999999876


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      .+. +-...                  +...|..+++.+++|.++
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~~  115 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPNI  115 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCSB
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCccC
Confidence            542 11110                  112357788889999764

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.13  E-value=0.002  Score=58.11  Aligned_cols=116  Identities=16%  Similarity=0.191  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++....  .++.... +-+|   +.++++     
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQ   87 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999886  8999998752  22233343222  1333322 1122   222332     


Q ss_pred             --CCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHHHHH----HHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPR--KP--GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~iiv~tNP  147 (358)
                        +.|+||..||...  .+  ..+.   ...+..|+.-...    +.+.+.+.. .+.+++++..
T Consensus        88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~  151 (260)
T 3awd_A           88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK-QGVIVAIGSM  151 (260)
T ss_dssp             HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEecc
Confidence              7899999998643  11  2222   3345556544444    444444333 4566666543

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=97.13  E-value=0.0011  Score=62.69  Aligned_cols=97  Identities=18%  Similarity=0.219  Sum_probs=69.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-----CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-C---CccccccCC---
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNP-----LVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-N---DQLGQALED---   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~-----~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~---~d~~~al~~---   96 (358)
                      |||.|+||+|++|++++..|...+     .  +|+.+|.+.....   +.+    .+++...+ -   +++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998877     5  8999998752111   111    12332211 1   223456777   


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                      +|+||++|+...   .+..+....|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34567788999999999999998743

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.13  E-value=0.0006  Score=61.92  Aligned_cols=158  Identities=16%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-   95 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-   95 (358)
                      +|.-+.+++.|+||+|++|..++..|+..+.  +|++.|.++.  .....++..     ++.... +-+|   ..+.++ 
T Consensus         4 ~m~l~~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~   76 (261)
T 3n74_A            4 SMSLEGKVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEA   76 (261)
T ss_dssp             -CTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHH
T ss_pred             cccCCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHH
Confidence            3455567899999999999999999999987  8999998762  222223321     222221 1112   222233 


Q ss_pred             ------CCCEEEEcCCCCCCCC----CCHH---HHHHHH----HHHHHHHHHHHHhhC---CCeEEEEeeCCCCcchHHH
Q 018314           96 ------DSDVVIIPAGVPRKPG----MTRD---DLFNIN----AGIVKDLCSAIAKYC---PNAIVNMISNPVNSTVPIA  155 (358)
Q Consensus        96 ------~aDiVIi~ag~~~~~g----~~r~---~~~~~N----~~i~~~i~~~i~~~~---p~a~iiv~tNP~d~~t~~~  155 (358)
                            ..|++|..||....++    .+..   ..+..|    ..+.+.+.+.+.+..   ..+.|++++......    
T Consensus        77 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~----  152 (261)
T 3n74_A           77 ALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR----  152 (261)
T ss_dssp             HHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS----
T ss_pred             HHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC----
Confidence                  6799999998753221    2222   234444    344666666666553   256677666544211    


Q ss_pred             HHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       156 ~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                             + .|..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       153 -------~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  188 (261)
T 3n74_A          153 -------P-RPNLAWYNATKGWVVSVTKALAIELA--PAKIRVVAL  188 (261)
T ss_dssp             -------C-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -------C-CCCccHHHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence                   1 22222233332223345566666653  445655444

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.12  E-value=0.0025  Score=57.03  Aligned_cols=117  Identities=18%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe-cCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D-~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.| .++.  .....++....  .++.... +-+|   +.++++    
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   79 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMD   79 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999986  899884 4432  22233333222  2333322 1122   222222    


Q ss_pred             ---CCCEEEEcCCCCCCC------CCCHHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 ---DSDVVIIPAGVPRKP------GMTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ---~aDiVIi~ag~~~~~------g~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                         +.|+||..||.....      .......+..|+.-    .+.+.+.+.+.. .+.+|+++...
T Consensus        80 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~~  144 (247)
T 2hq1_A           80 AFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK-SGKIINITSIA  144 (247)
T ss_dssp             HHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred             hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcChh
Confidence               789999999864311      11223455666555    444444444443 45677666543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.11  E-value=0.0015  Score=58.65  Aligned_cols=115  Identities=15%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-.|   +.++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999886  8999998752  22233343222  1333322 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCC--CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRKP--GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        +.|+||..||.....  ..+.   ...+..|+.-.    +.+.+.+++.. .+.+++++.
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              899999999864321  2232   33455665554    44444444443 456666654

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.11  E-value=0.0028  Score=60.58  Aligned_cols=105  Identities=18%  Similarity=0.099  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c-C---CccccccCCCCEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G-N---DQLGQALEDSDVVII  102 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~-~---~d~~~al~~aDiVIi  102 (358)
                      +++|.|+||+|++|++++..|...+.  +|+.++.+.......++....   .++... + -   +++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~---~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcC---CcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            56899999999999999999988876  899999876322223333211   233222 1 1   234567899999998


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                      .++...   .      ..|... +.+++.+++.. .. .+|.+|...
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~  115 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMPD  115 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECCC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCcc
Confidence            775321   1      134444 77777777775 33 455565443

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.10  E-value=0.0005  Score=62.93  Aligned_cols=100  Identities=11%  Similarity=0.059  Sum_probs=66.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC--CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi  102 (358)
                      +||.|+||+|++|++++..|...  +.  +|+.++.+.....  ++...    .++... +   .+++.++++++|+||+
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~D~~d~~~l~~~~~~~d~vi~   72 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAS--TLADQ----GVEVRHGDYNQPESLQKAFAGVSKLLF   72 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTH--HHHHT----TCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHh--HHhhc----CCeEEEeccCCHHHHHHHHhcCCEEEE
Confidence            47999999999999999999887  54  8999998652211  12111    111111 1   1234567899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +++..  .+  .    ..|+...+.+.+.+++.... .+|.+|
T Consensus        73 ~a~~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           73 ISGPH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCCCC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             cCCCC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            98753  11  1    35788888888888876544 344444

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=97.10  E-value=0.00069  Score=63.03  Aligned_cols=100  Identities=12%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag  105 (358)
                      +|||.|+||+|++|++++..|...+.  ++++++.+..    .|+.+            .+++.++++  ++|+||++|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcCe
Confidence            46999999999999999999998886  7888775421    12211            123345667  8999999998


Q ss_pred             CCCCC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          106 VPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       106 ~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .....   ..+..+.+..|+.....+.+.+.+.... .+|.+|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS  107 (321)
T 1e6u_A           65 KVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGS  107 (321)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             ecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence            64311   1234567788999999999998886543 4554443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.10  E-value=0.0032  Score=56.93  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=50.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.     .++.... +-+   ++.++++     
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLG-----NNCVFAPADVTSEKDVQTALALAKGK   83 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhC-----CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998762  22233331     1233221 112   2223333     


Q ss_pred             --CCCEEEEcCCCC
Q 018314           96 --DSDVVIIPAGVP  107 (358)
Q Consensus        96 --~aDiVIi~ag~~  107 (358)
                        ..|+||..||..
T Consensus        84 ~g~id~li~~Ag~~   97 (265)
T 2o23_A           84 FGRVDVAVNCAGIA   97 (265)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             CCCCCEEEECCccC
Confidence              899999999864

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.10  E-value=0.0018  Score=58.71  Aligned_cols=115  Identities=13%  Similarity=0.179  Sum_probs=72.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCC---ccccccC-------C
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GND---QLGQALE-------D   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-------~   96 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++......++....  .++.... +-+   ++.++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999876433333443322  1333321 112   2223344       8


Q ss_pred             CCEEEEcCCCCCCC---CCC---HHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           97 SDVVIIPAGVPRKP---GMT---RDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~---r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .|++|..||.....   ..+   ....+..|+.    ..+.+.+.+++.. .+.||+++..
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIASV  139 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcCc
Confidence            99999999864321   122   2334566665    6677777777654 4566766654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.09  E-value=0.0013  Score=65.83  Aligned_cols=98  Identities=13%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC---CCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED---SDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~---aDiVIi~a  104 (358)
                      ++||+|||+ |.+|..++..|+..++  +|.+||+++..  ..++........+..   ++|+.+.+++   +|+||++.
T Consensus         5 ~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~gi~~---~~s~~e~v~~l~~aDvVilav   76 (474)
T 2iz1_A            5 QANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSK--TEEVFKEHQDKNLVF---TKTLEEFVGSLEKPRRIMLMV   76 (474)
T ss_dssp             TBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHH--HHHHHHHTTTSCEEE---CSSHHHHHHTBCSSCEEEECC
T ss_pred             CCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHH--HHHHHHhCcCCCeEE---eCCHHHHHhhccCCCEEEEEc
Confidence            368999997 9999999999999887  89999986522  112221100113443   2455566555   99999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                      ..    +           ..++++.+.+..+. |+.++|..+|..
T Consensus        77 p~----~-----------~~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           77 QA----G-----------AATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             CT----T-----------HHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             cC----c-----------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            21    1           12333445555554 566777777765

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.09  E-value=0.0005  Score=65.85  Aligned_cols=116  Identities=12%  Similarity=-0.024  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC-----CCc-cEEEEec-CC---ccccccCC--
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-----TRS-EVAGYMG-ND---QLGQALED--   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-----~~~-~v~~~~~-~~---d~~~al~~--   96 (358)
                      ++|.|+||+|++|+.++..|...+.  +|+++|.+........+.+..     ... .+..... -.   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999998886  899999764210000011110     001 3333321 12   23345554  


Q ss_pred             CCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEeeC
Q 018314           97 SDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISN  146 (358)
Q Consensus        97 aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~iiv~tN  146 (358)
                      .|+||.+||.....  .......+..|+.....+.+.+.+..    +++.+|.+|.
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS  162 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS  162 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCc
Confidence            59999999864311  12234566778888888888777654    2346665543

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.08  E-value=0.0042  Score=57.79  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=72.4

Q ss_pred             cccccccccCCCC--CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------------cHHHHHHhhcCCC
Q 018314           14 KPAGARGYSSESV--PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINT   77 (358)
Q Consensus        14 ~~~~~~~~~~~~~--~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~   77 (358)
                      +|.-.+++.+|..  +.+.+.|+||+|++|..++..|+..+.  .|+++|+++              ......++.... 
T Consensus        12 ~~~~~~~p~~m~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   88 (299)
T 3t7c_A           12 LEAQTQGPGSMAGKVEGKVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG-   88 (299)
T ss_dssp             ----------CCCTTTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT-
T ss_pred             eeccCCCCcccccccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC-
Confidence            4555566666653  356799999999999999999999987  899999862              112222333222 


Q ss_pred             CccEEEEe-cCCc---ccccc-------CCCCEEEEcCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHhh
Q 018314           78 RSEVAGYM-GNDQ---LGQAL-------EDSDVVIIPAGVPRKP----GMTR---DDLFNINA----GIVKDLCSAIAKY  135 (358)
Q Consensus        78 ~~~v~~~~-~~~d---~~~al-------~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~----~i~~~i~~~i~~~  135 (358)
                       .++.... +-+|   ..+.+       ...|++|..||.....    ..+.   ...+..|+    .+.+.+.+.+.+.
T Consensus        89 -~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~  167 (299)
T 3t7c_A           89 -RRIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAG  167 (299)
T ss_dssp             -CCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred             -CceEEEECCCCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence             2333322 1122   12222       3789999999864321    2232   23445554    4556666666655


Q ss_pred             CCCeEEEEeeCCC
Q 018314          136 CPNAIVNMISNPV  148 (358)
Q Consensus       136 ~p~a~iiv~tNP~  148 (358)
                      ...+.||+++.-.
T Consensus       168 ~~~g~Iv~isS~~  180 (299)
T 3t7c_A          168 KRGGSIVFTSSIG  180 (299)
T ss_dssp             TSCEEEEEECCGG
T ss_pred             CCCcEEEEECChh
Confidence            5567777776543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.08  E-value=0.00046  Score=63.41  Aligned_cols=101  Identities=14%  Similarity=0.151  Sum_probs=64.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe----cCCccccccCC-CCEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM----GNDQLGQALED-SDVVII  102 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~-aDiVIi  102 (358)
                      +|||.|+|| |++|+.++..|...+.  +|+.++.+...     +.     ..++...    +..++.+++++ +|+||+
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~-----~~-----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih   69 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQP-----MP-----AGVQTLIADVTRPDTLASIVHLRPEILVY   69 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSC-----CC-----TTCCEEECCTTCGGGCTTGGGGCCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCccc-----cc-----cCCceEEccCCChHHHHHhhcCCCCEEEE
Confidence            579999996 9999999999999887  89999986521     11     1111111    11234456777 999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +|+...   .+..+....|+...+.+.+.+++.... .+|.+|
T Consensus        70 ~a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           70 CVAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             CHHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             eCCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            987421   112334556888888888888875543 344443

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.07  E-value=0.0055  Score=55.60  Aligned_cols=116  Identities=10%  Similarity=0.154  Sum_probs=70.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+++.|+||+|++|.+++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.+       
T Consensus         6 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            6 EKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  899999876  233334444322  2343332 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+....+.||+++..
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  144 (257)
T 3imf_A           82 GRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVAT  144 (257)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECch
Confidence            278999999986432 1  2222   233445544    455566666555556777777653

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.06  E-value=0.0018  Score=67.13  Aligned_cols=111  Identities=15%  Similarity=0.112  Sum_probs=73.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCc----cccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQ----LGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d----~~~al~~aDiV  100 (358)
                      ++++|.|+||+|++|++++..|... +.  +|+++|.+....  .++..   ..+++...+ -.|    +.++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~--~~~~~---~~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAI--SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTT--GGGTT---CTTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhh--hhhcc---CCceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            5678999999999999999999887 65  899999865211  11111   123443321 122    23456789999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      |++||.....  ..+..+.+..|+.-...+.+.+.+..  ..+|.+|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9999864321  12345567788888889999888876  45555544

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.06  E-value=0.0025  Score=59.81  Aligned_cols=63  Identities=19%  Similarity=0.332  Sum_probs=43.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ||++||- |.||..++..|+..++  +|+.||+++..  +.++.+..    .+.   .+++.++++++|+||++.
T Consensus         7 kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            7 KIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASK--AEPLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTC--EEEEC---------CTTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             cEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            8999997 9999999999999998  99999987522  22233222    222   245678899999999974

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.06  E-value=0.00045  Score=63.56  Aligned_cols=153  Identities=15%  Similarity=0.111  Sum_probs=86.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      ++++|.|+||+|++|.+++..|+..+.  +|++.|.+..  .....++.     .++.... +-+|   ..++++     
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDLVAAYP-----DRAEAISLDVTDGERIDVVAADVLAR   76 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHCT-----TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcc-----CCceEEEeeCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999999987  8999998762  22222211     1233322 1122   222232     


Q ss_pred             --CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           96 --DSDVVIIPAGVPRK-P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        96 --~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                        +.|+||.+||.... +  ..+.   ...+..|+.-    .+.+.+.+++.. .+.||+++.....           .+
T Consensus        77 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~-----------~~  144 (281)
T 3m1a_A           77 YGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISSFGGQ-----------LS  144 (281)
T ss_dssp             HSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------CC
T ss_pred             CCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcCcccc-----------CC
Confidence              78999999986421 1  2222   2345666655    777777777665 3556666553311           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .++.-.++.+......+-+.+++.++  +..+++.++
T Consensus       145 -~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  179 (281)
T 3m1a_A          145 -FAGFSAYSATKAALEQLSEGLADEVA--PFGIKVLIV  179 (281)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHhh--ccCcEEEEE
Confidence             33333444433223445566666642  344554433

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.06  E-value=0.0047  Score=56.38  Aligned_cols=69  Identities=9%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +|||.|+|| |++|++++..|...+.  +|+.++++.....  .+...    .++... +-+|+.  ++++|+||++|+.
T Consensus         5 ~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQME--AIRAS----GAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHH--HHHHT----TEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             cCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhh--hHhhC----CCeEEEecccccc--cCCCCEEEECCCc
Confidence            469999998 9999999999998887  8999998753222  12211    233332 224443  8999999999975


Q ss_pred             C
Q 018314          107 P  107 (358)
Q Consensus       107 ~  107 (358)
                      .
T Consensus        74 ~   74 (286)
T 3ius_A           74 D   74 (286)
T ss_dssp             B
T ss_pred             c
Confidence            4

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.06  E-value=0.0052  Score=55.92  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++...   .++..+. +-+|   +.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998652  2222233221   1333332 1122   222333     


Q ss_pred             --CCCEEEEcCCCCCC-----CCCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPRK-----PGMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~~-----~g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP  147 (358)
                        +.|+||..||....     ...+   ..+.+..|+.-...+.+.+.++   ...+.+|+++..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  154 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASI  154 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCG
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeec
Confidence              78999999986431     1122   2334556655544444444433   234666766543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.05  E-value=0.0011  Score=63.66  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=56.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccC----CCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALE----DSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~----~aDiVI  101 (358)
                      ..+||+|||+ |.+|.+++..|...+.  +|++||.++. ...+.++   .    +...   .|+.++++    +||+||
T Consensus         7 ~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~a~~~---G----~~~~---~~~~e~~~~a~~~aDlVi   73 (341)
T 3ktd_A            7 ISRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKSAVDE---G----FDVS---ADLEATLQRAAAEDALIV   73 (341)
T ss_dssp             CSSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHT---T----CCEE---SCHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc---C----Ceee---CCHHHHHHhcccCCCEEE
Confidence            4579999997 9999999999999886  8999998752 2222222   1    1111   33445554    579999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      ++.-                ...+.++.+.+..+.|+++++.+
T Consensus        74 lavP----------------~~~~~~vl~~l~~~~~~~iv~Dv  100 (341)
T 3ktd_A           74 LAVP----------------MTAIDSLLDAVHTHAPNNGFTDV  100 (341)
T ss_dssp             ECSC----------------HHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             EeCC----------------HHHHHHHHHHHHccCCCCEEEEc
Confidence            9851                12233444555556677765544

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.04  E-value=0.0066  Score=55.40  Aligned_cols=161  Identities=12%  Similarity=0.123  Sum_probs=90.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc------ccccC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL------GQALE   95 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~------~~al~   95 (358)
                      .-+.+++.|+||+|++|..++..|+..+.  +|++.|.++  ......++........+.... +-+|.      .+.+.
T Consensus         7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g   84 (267)
T 3t4x_A            7 QLKGKTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYP   84 (267)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCC
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcC
Confidence            33456899999999999999999999987  899999876  223333443322112333322 11221      12334


Q ss_pred             CCCEEEEcCCCCCCC---CCCHH---HHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTRD---DLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      ..|++|..||.....   ..+..   ..+..|+.-    .+.+.+.+.+. ..+.||+++......           + .
T Consensus        85 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~-~  151 (267)
T 3t4x_A           85 KVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAIM-----------P-S  151 (267)
T ss_dssp             CCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGTS-----------C-C
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhcc-----------C-C
Confidence            789999999975322   22222   335566544    56666666544 356677665543211           1 2


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      +..-.++.+......+-+.++..++  +..|++..+.
T Consensus       152 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          152 QEMAHYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            2222333332223455667777664  5566665553

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.03  E-value=0.0046  Score=56.56  Aligned_cols=159  Identities=13%  Similarity=0.165  Sum_probs=88.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      -+.+++.|+||+|++|..++..|+..+.  +|++.|.+.   ......++....  .++.... +-+|   ..+.+    
T Consensus        16 l~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~   91 (270)
T 3is3_A           16 LDGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAV   91 (270)
T ss_dssp             CTTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999999987  888888765   223333443322  2333322 1122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                         ...|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- +.+.||+++......          .+ 
T Consensus        92 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~----------~~-  160 (270)
T 3is3_A           92 AHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD----------FS-  160 (270)
T ss_dssp             HHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT----------CC-
T ss_pred             HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc----------CC-
Confidence               3679999999975321   1232   3345667666655665555543 356677666544111          11 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+...-..+-+.+++.++  +..|++..+
T Consensus       161 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  195 (270)
T 3is3_A          161 VPKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVNAV  195 (270)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            22223333332223345566677663  455665444

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.03  E-value=0.0017  Score=59.95  Aligned_cols=113  Identities=19%  Similarity=0.186  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++.  .....++..     ++.... +-+|.   .+.       
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIGC-----GAAACRVDVSDEQQIIAMVDACVAA  100 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCS-----SCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcCC-----cceEEEecCCCHHHHHHHHHHHHHH
Confidence            445789999999999999999999987  8999998752  222233311     122111 11221   122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++..
T Consensus       101 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS~  163 (277)
T 3gvc_A          101 FGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSSL  163 (277)
T ss_dssp             HSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcch
Confidence            23789999999874321   2232   2345556544    45555555543 35677777653

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.03  E-value=0.00076  Score=62.53  Aligned_cols=94  Identities=16%  Similarity=0.039  Sum_probs=61.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHH---HhhcCCCCccEEEEe----cCCccccccCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAA---DVGHINTRSEVAGYM----GNDQLGQALEDS   97 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~---dl~~~~~~~~v~~~~----~~~d~~~al~~a   97 (358)
                      ++||.|+||+|++|++++..|...+.  +|++++++..   .....   ++...    .++...    +.+++.++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~----~~~~~~~D~~d~~~l~~~~~~~   77 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEASLDDHQRLVDALKQV   77 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTT----TCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhC----CeEEEeCCCCCHHHHHHHHhCC
Confidence            56899999999999999999998886  8999998741   22222   22221    122221    113456788999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      |+||.+++.....         .|....+.+++.+++.+
T Consensus        78 d~vi~~a~~~~~~---------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           78 DVVISALAGGVLS---------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             SEEEECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred             CEEEECCccccch---------hhHHHHHHHHHHHHhcC
Confidence            9999998754211         13444566677777665

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.02  E-value=0.0035  Score=57.14  Aligned_cols=117  Identities=21%  Similarity=0.271  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.......++.... +-+|   ..++++      
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  22223333211012333322 1122   222232      


Q ss_pred             -CCCEEEEcCCCCCC--C--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 -DSDVVIIPAGVPRK--P--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 -~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ..|++|..||....  +  ..+.   ...+..|+    ...+.+.+.+++.. .+.||+++..
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  153 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASV  153 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcch
Confidence             67999999987532  1  1222   23445554    44566777776654 3566666554

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.02  E-value=0.0085  Score=54.75  Aligned_cols=118  Identities=19%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-.|   +.+++      
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  105 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAE  105 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999986  8999998752  22223343222  1333332 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           95 -EDSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                       .+.|+||..||......   .+   ....+..|+.-    .+.+.+.+.+. ..+.||+++....
T Consensus       106 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~~  170 (272)
T 1yb1_A          106 IGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAAG  170 (272)
T ss_dssp             TCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC-
T ss_pred             CCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechhh
Confidence             37899999998753221   11   12345556554    45555555443 3566777766554

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.00  E-value=0.0029  Score=59.27  Aligned_cols=113  Identities=18%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---ccccccC--CCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQALE--DSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~--~aDiV  100 (358)
                      |||.|+||+|++|++++..|+..+.  +|+++|...  ......++.... ..++.... +-.   ++.++++  +.|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999887  899998642  111111221110 01122221 112   2233444  58999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |++||.....  .....+.+..|+.-...+.+.+++.... .+|.+|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999854211  1123456788999999999988877544 344443

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.99  E-value=0.00082  Score=62.12  Aligned_cols=74  Identities=20%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-------cHHH-HHHhhcCCCCccEEEEe-c---CCccccccC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------TPGV-AADVGHINTRSEVAGYM-G---NDQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-------~~~~-~~dl~~~~~~~~v~~~~-~---~~d~~~al~   95 (358)
                      ++||.|+||+|++|++++..|...+.  +|+.++++.       .... ..++.+..    ++... +   .+++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~----v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLG----VILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTT----CEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCC----CEEEEeCCCCHHHHHHHHh
Confidence            56899999999999999999988875  788888864       1111 11222211    22211 1   123557889


Q ss_pred             CCCEEEEcCCCC
Q 018314           96 DSDVVIIPAGVP  107 (358)
Q Consensus        96 ~aDiVIi~ag~~  107 (358)
                      ++|+||.+++..
T Consensus        76 ~~d~vi~~a~~~   87 (307)
T 2gas_A           76 QVDIVICAAGRL   87 (307)
T ss_dssp             TCSEEEECSSSS
T ss_pred             CCCEEEECCccc
Confidence            999999998754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.99  E-value=0.008  Score=55.18  Aligned_cols=169  Identities=12%  Similarity=0.085  Sum_probs=90.4

Q ss_pred             ccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc--
Q 018314           15 PAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (358)
Q Consensus        15 ~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (358)
                      |.+++.|....-+.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++.... +-+|  
T Consensus        14 ~~~~~~~~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~   90 (277)
T 4fc7_A           14 PAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPP   90 (277)
T ss_dssp             SCCCCSBCTTTTTTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHH
T ss_pred             ccCCCCCCccccCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHH
Confidence            444555554444566899999999999999999999987  899999875  222333332211 11233222 1122  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHH----HHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVK----DLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        90 -~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~----~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                       ..+.+       ...|++|..||.....   ..+.   ...+..|+.-..    .+.+.+.+. ..+.||+++....  
T Consensus        91 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~--  167 (277)
T 4fc7_A           91 AVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITATLG--  167 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECCSHH--
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECchhh--
Confidence             11222       3789999999864321   1222   234555654444    444443333 2566776664321  


Q ss_pred             hHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          152 VPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       152 t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                               ..+ .+..-.++.+......+-+.+|..++  ++.|++..+
T Consensus       168 ---------~~~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  205 (277)
T 4fc7_A          168 ---------NRG-QALQVHAGSAKAAVDAMTRHLAVEWG--PQNIRVNSL  205 (277)
T ss_dssp             ---------HHT-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ---------CCC-CCCcHHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence                     112 33333333332223345566666653  445555444

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.99  E-value=0.015  Score=53.57  Aligned_cols=156  Identities=13%  Similarity=0.134  Sum_probs=84.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .+.+.|+||+|++|..++..|+..+.  +|++.|.+.   ......++....  .++.... +-+|   ..++++     
T Consensus        29 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           29 RPVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            45789999999999999999999987  899999754   223333444322  2333332 1122   222333     


Q ss_pred             --CCCEEEEcCCCC--C-CC--CCCHH---HHHHHH----HHHHHHHHHHHHhhCC--CeEEEEeeCCCCcchHHHHHHH
Q 018314           96 --DSDVVIIPAGVP--R-KP--GMTRD---DLFNIN----AGIVKDLCSAIAKYCP--NAIVNMISNPVNSTVPIAAEVF  159 (358)
Q Consensus        96 --~aDiVIi~ag~~--~-~~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p--~a~iiv~tNP~d~~t~~~~~~~  159 (358)
                        ..|++|..||..  . .+  ..+..   ..+..|    ..+.+.+.+.+.+...  .+.||+++......        
T Consensus       105 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~--------  176 (280)
T 4da9_A          105 FGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM--------  176 (280)
T ss_dssp             HSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC------------
T ss_pred             cCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc--------
Confidence              789999999872  1 11  12222   223334    4455677777766552  56777776544221        


Q ss_pred             HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                         + .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       177 ---~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  212 (280)
T 4da9_A          177 ---T-SPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEV  212 (280)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             ---C-CCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence               1 22222333332223445666777763  455665544

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.99  E-value=0.0012  Score=59.55  Aligned_cols=154  Identities=12%  Similarity=0.183  Sum_probs=82.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccc---ccCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQ---ALED   96 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~---al~~   96 (358)
                      .+.++|.|+||+|++|..++..|+..+.  +|++.|.++.  .....++..     ++.... +-+|   ..+   .+.+
T Consensus        12 ~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~   84 (249)
T 3f9i_A           12 LTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTSN   84 (249)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCSC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcCC
Confidence            4566899999999999999999999986  8999998752  222223322     222211 1112   112   2347


Q ss_pred             CCEEEEcCCCCCCC------CCCHHHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP------GMTRDDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~------g~~r~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      .|++|..||.....      .++-...+..|+.    +.+.+.+.+.+. ..+.||+++......           + .+
T Consensus        85 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~~-----------~-~~  151 (249)
T 3f9i_A           85 LDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVGIA-----------G-NP  151 (249)
T ss_dssp             CSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC-------------C-CS
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHhcc-----------C-CC
Confidence            89999999864311      1223445555544    445555555543 356677776654221           1 33


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+......+-+.+++.++  +..|++..+
T Consensus       152 ~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  184 (249)
T 3f9i_A          152 GQANYCASKAGLIGMTKSLSYEVA--TRGITVNAV  184 (249)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence            333333332223345556666653  344555444

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.98  E-value=0.0019  Score=58.47  Aligned_cols=112  Identities=17%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.     .++.... +-+|   ..+++      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22222331     1233221 1112   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|++|..||.....   ..+.   ...+..|+.    ..+.+.+.+++..  +.||+++..
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS~  139 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMASV  139 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcch
Confidence             2469999999974321   2222   234556644    5566677776554  677777654

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.98  E-value=0.0017  Score=53.58  Aligned_cols=96  Identities=11%  Similarity=0.115  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cc-cccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~al~~aDiVIi~a  104 (358)
                      .+|.|+|+ |.+|..++..|...+.  +++++|.++..  ...+.+...  .+.. .+.++   +. ..+.+||+||++.
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~~~~~g~--~~i~-gd~~~~~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTR--VDELRERGV--RAVL-GNAANEEIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHTTC--EEEE-SCTTSHHHHHHTTGGGCSEEEECC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHH--HHHHHHcCC--CEEE-CCCCCHHHHHhcCcccCCEEEEEC
Confidence            58999998 9999999999999887  89999987622  222332221  1211 11122   11 1367999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +..           ..|..+    +..+++.+|+..+|.-.|-
T Consensus        80 ~~~-----------~~n~~~----~~~a~~~~~~~~iiar~~~  107 (140)
T 3fwz_A           80 PNG-----------YEAGEI----VASARAKNPDIEIIARAHY  107 (140)
T ss_dssp             SCH-----------HHHHHH----HHHHHHHCSSSEEEEEESS
T ss_pred             CCh-----------HHHHHH----HHHHHHHCCCCeEEEEECC
Confidence            321           244333    4456667888776655543

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.97  E-value=0.0021  Score=57.21  Aligned_cols=152  Identities=15%  Similarity=0.106  Sum_probs=80.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccCCC----C
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALEDS----D   98 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~~a----D   98 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..     ++.... +-+   +..+.++..    |
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~d   74 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLSTVTNCLSN-----NVGYRARDLASHQEVEQLFEQLDSIPS   74 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHHHHHTCSS-----CCCEEECCTTCHHHHHHHHHSCSSCCS
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhh-----ccCeEeecCCCHHHHHHHHHHHhhcCC
Confidence            4699999999999999999999986  7999998752  222222211     111111 111   122233332    9


Q ss_pred             EEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314           99 VVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus        99 iVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      ++|..||.....   ..+.   ...+..|+.-...+.+.+.++-  ..+.+|+++.....           .+ .+..-.
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~-----------~~-~~~~~~  142 (230)
T 3guy_A           75 TVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ-----------QP-KAQEST  142 (230)
T ss_dssp             EEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT-----------SC-CTTCHH
T ss_pred             EEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC-----------CC-CCCCch
Confidence            999999864322   1222   2345556554444444443331  12356655543321           11 223333


Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ++.+......+-+.+++.++  +..|++..+
T Consensus       143 Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          143 YCAVKWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            33333233456677777764  455655544

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.97  E-value=0.0046  Score=56.08  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=69.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.......++.... +-+|   +.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   83 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDL   83 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999987  8999998752  22223333210011233322 1122   223333     


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       +.|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++..
T Consensus        84 ~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  145 (260)
T 2z1n_A           84 GGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGSV  145 (260)
T ss_dssp             TCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECch
Confidence             599999999864321   1222   2344555444    466666666554 4566666553

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.97  E-value=0.0068  Score=55.94  Aligned_cols=117  Identities=11%  Similarity=0.118  Sum_probs=67.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.... ..++.... +-+|   +.++++     
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999987  8999998752  22223332210 11333322 1122   222232     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        ..|+||.+||.....   ..+   ....+..|+.-.    +.+.+.+.+....+.+|+++.
T Consensus       102 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          102 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence              459999999864321   122   233455565544    444444443344566666654

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=96.96  E-value=0.0041  Score=56.29  Aligned_cols=115  Identities=23%  Similarity=0.307  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-+|   +.++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999987  8999998752  22233343222  1233221 1122   222333       


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+..+.+.||+++.-
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  140 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQ  140 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECch
Confidence            799999999864321   1222   23445554    3456666666665535677776554

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.96  E-value=0.0074  Score=55.20  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------------cHHHHHHhhcCCCCccEEEEe-cCCc--
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++              ......++....  .++..+. +-+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345899999999999999999999987  899999861              111122222221  2333332 1122  


Q ss_pred             -cccccC-------CCCEEEEcCCCCCCCC-C-CHHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           90 -LGQALE-------DSDVVIIPAGVPRKPG-M-TRDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        90 -~~~al~-------~aDiVIi~ag~~~~~g-~-~r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                       ..+.++       ..|++|..||...... . .-...+..|+    .+.+.+.+.+.+....+.||+++.-.
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~  160 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSA  160 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHH
Confidence             222233       7899999999753221 1 1223444553    45566666677666677777776543

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.96  E-value=0.0028  Score=57.31  Aligned_cols=117  Identities=20%  Similarity=0.237  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCC-----CCccEEEEe-cCCc---cccccCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHIN-----TRSEVAGYM-GNDQ---LGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~-----~~~~v~~~~-~~~d---~~~al~~   96 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.+..  .....++....     ...++..+. +-+|   +.+++++
T Consensus         7 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            7 SALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            45899999999999999999999886  8999998752  22222222111     001233322 1122   2223333


Q ss_pred             C--------CEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           97 S--------DVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        97 a--------DiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +        |+||..||.....   ..+   ....+..|+.-    .+.+.+.+.+....+.||+++.
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            3        9999999875321   122   23345555544    4444444544443566776655

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.95  E-value=0.0027  Score=57.49  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=67.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCcccccc-------CCCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL-------EDSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al-------~~aDiV  100 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|+++. .....++....  .++... +.++..+.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~--~~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETY--PQLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHC--TTSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcC--CcEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999987  8999998752 11222232211  112211 223333333       378999


Q ss_pred             EEcCCCC-C-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          101 IIPAGVP-R-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       101 Ii~ag~~-~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      |..||.. . .+  ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++.-.
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  134 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSAT  134 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCST
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcc
Confidence            9999975 2 11  1222   234455543    4555666665544 45677676544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=96.95  E-value=0.0026  Score=59.85  Aligned_cols=65  Identities=20%  Similarity=0.339  Sum_probs=49.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+||++||- |.||+.++..|...++  +++.||+++  ..+.++....    .+.   ..++.++.++||+||.+-
T Consensus         3 M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~--~~~~~l~~~G----a~~---a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            3 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQ--SAVDGLVAAG----ASA---ARSARDAVQGADVVISML   67 (300)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSH--HHHHHHHHTT----CEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCH--HHHHHHHHcC----CEE---cCCHHHHHhcCCceeecC
Confidence            569999997 9999999999999998  999999865  2333344332    122   234678899999999974

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.95  E-value=0.00051  Score=63.61  Aligned_cols=165  Identities=13%  Similarity=0.091  Sum_probs=91.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC--CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccC--CCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALE--DSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~--~aDiVIi~  103 (358)
                      +||.|+||+|++|++++..|...  +.  +|+++|.+.......  ....   -+..- .+.+++.++++  ++|+||++
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSGP---FEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSSC---EEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCCc---eEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            68999999999999999988876  55  899999865221111  1110   11110 00123345566  89999999


Q ss_pred             CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH-H-HHHHhCCCCCCceEeeccccHHH
Q 018314          104 AGVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-E-VFKKAGTYNEKKLFGVTTLDVVR  180 (358)
Q Consensus       104 ag~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~-~-~~~~sg~~~~~kviG~t~lds~R  180 (358)
                      |+..... ..+..+.+..|+.....+.+.+.+.... .+|.+|... +...-.. . .-.... ..+...+|.+.....+
T Consensus        76 a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~-~~~~~~~~~~~~e~~~-~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           76 AALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIA-VFGPTTPKENTPQYTI-MEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGG-GCCTTSCSSSBCSSCB-CCCCSHHHHHHHHHHH
T ss_pred             CccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHH-HhCCCCCCCCccccCc-CCCCchhHHHHHHHHH
Confidence            9863211 1234567788999999999998876543 444443221 0000000 0 000001 1223344444444445


Q ss_pred             HHHHHHHHcCCCCCCCc-eEEEee
Q 018314          181 AKTFYAGKANVNVAEVN-VPVVGG  203 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~-~~v~G~  203 (358)
                      +-..+++..|++..-++ ..++|.
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecC
Confidence            55555666677665565 457774

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.95  E-value=0.0055  Score=56.33  Aligned_cols=116  Identities=18%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-+|   ..+++       
T Consensus        22 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           22 SEVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERY   97 (277)
T ss_dssp             SCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999986  8999998752  22233343222  1233221 1122   11222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-----~p~a~iiv~tNP  147 (358)
                      .+.|++|..||.....   ..+.   ...+..|+.-...+.+.+.+.     ...+.||+++..
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~  161 (277)
T 2rhc_B           98 GPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST  161 (277)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence            3789999999875321   1222   344566666555555554332     124567766654

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.95  E-value=0.00063  Score=63.48  Aligned_cols=91  Identities=16%  Similarity=0.173  Sum_probs=58.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c---HHHHH---HhhcCCCCccEEEEe-c---CCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T---PGVAA---DVGHINTRSEVAGYM-G---NDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~---~~~~~---dl~~~~~~~~v~~~~-~---~~d~~~al~   95 (358)
                      ++++|.|+||+|++|++++..|...+.  +|++++++. .   .....   ++....    ++... +   .+++.++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~----v~~v~~D~~d~~~l~~a~~   76 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMG----VTIIEGEMEEHEKMVSVLK   76 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTT----CEEEECCTTCHHHHHHHHT
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCC----cEEEEecCCCHHHHHHHHc
Confidence            356899999999999999999998886  899998874 1   11211   222211    22211 1   124567889


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      ++|+||.+++...             ....+.+++.+.+.+
T Consensus        77 ~~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (321)
T 3c1o_A           77 QVDIVISALPFPM-------------ISSQIHIINAIKAAG  104 (321)
T ss_dssp             TCSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CCCEEEECCCccc-------------hhhHHHHHHHHHHhC
Confidence            9999999987532             223355566666665

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.94  E-value=0.0045  Score=56.83  Aligned_cols=168  Identities=18%  Similarity=0.220  Sum_probs=85.7

Q ss_pred             ccccccccCCCC--CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc
Q 018314           15 PAGARGYSSESV--PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ   89 (358)
Q Consensus        15 ~~~~~~~~~~~~--~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d   89 (358)
                      +.+.+++.+|..  +.+.+.|+||+|++|..++..|+..+.  +|++.|.++  ......++.....  ++.... +-+|
T Consensus        13 ~~~~~gp~~m~~~l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d   88 (270)
T 3ftp_A           13 EAQTQGPGSMDKTLDKQVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGL--EGRGAVLNVND   88 (270)
T ss_dssp             ----------CCTTTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTC--CCEEEECCTTC
T ss_pred             cCCCCCCcccccCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEEeCCC
Confidence            345556666653  345788889999999999999999987  899999876  2223333432221  111111 1122


Q ss_pred             ---ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           90 ---LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        90 ---~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                         ..+.+       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++... 
T Consensus        89 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~-  166 (270)
T 3ftp_A           89 ATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR-GGRIVNITSVV-  166 (270)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH-
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchh-
Confidence               22222       3789999999964321   2222   234455544    4455555555443 56677665422 


Q ss_pred             cchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          150 STVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       150 ~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                                -..+ .+..-.++.+......+-+.+++.++  +..|++.++
T Consensus       167 ----------~~~~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (270)
T 3ftp_A          167 ----------GSAG-NPGQVNYAAAKAGVAGMTRALAREIG--SRGITVNCV  205 (270)
T ss_dssp             ----------HHHC-CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             ----------hCCC-CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence                      1122 33333333332223345566676653  445555444

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.93  E-value=0.0018  Score=58.79  Aligned_cols=120  Identities=16%  Similarity=0.196  Sum_probs=72.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-   95 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-   95 (358)
                      +..+.++|.|+||+|++|..++..|+..+.  +|++.|...   ......++....  .++.... +-+|   +.++++ 
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~   92 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDK   92 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHH
Confidence            334556899999999999999999999986  899999833   222233343222  2333322 1122   223333 


Q ss_pred             ------CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           96 ------DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        96 ------~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                            +.|+||..||.....   ..+.   .+.+..|+.-...+.+.+.++. ..+.+|+++..
T Consensus        93 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~  157 (274)
T 1ja9_A           93 AVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  157 (274)
T ss_dssp             HHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             HHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcCh
Confidence                  789999999865321   1222   3456667766666666655543 12566666543

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.93  E-value=0.011  Score=53.90  Aligned_cols=158  Identities=22%  Similarity=0.263  Sum_probs=87.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++.... ..++.... +-+|   .++.+      
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLG-SGKVIGVQTDVSDRAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTS-SSCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhC-CCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            445899999999999999999999987  899999876  233344554432 12344332 1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRK-P--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ...|++|..||.... +  ..+..   ..+..|+.    +.+.+.+.+.+.. .+.||+++.-....          .+
T Consensus        86 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~----------~~  154 (262)
T 3pk0_A           86 FGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSITGPI----------TG  154 (262)
T ss_dssp             HSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCSBTTT----------BC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEechhhcc----------CC
Confidence             278999999986432 1  22322   23455543    4455566665544 35566665543211          11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+......+-+.+|..++  ++.|++..+
T Consensus       155 -~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3pk0_A          155 -YPGWSHYGATKAAQLGFMRTAAIELA--PHKITVNAI  189 (262)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCChhhHHHHHHHHHHHHHHHHHHH--hhCcEEEEE
Confidence             22222333332223445566666653  445555443

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.92  E-value=0.0024  Score=58.58  Aligned_cols=113  Identities=24%  Similarity=0.286  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-----   95 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++  ......++..     ++.... +-+   +..+.++     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   82 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVGR-----GAVHHVVDLTNEVSVRALIDFTIDT   82 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHCT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----CeEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999886  2333333321     111111 111   1222333     


Q ss_pred             --CCCEEEEcCCCCCC-C----CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPRK-P----GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~~-~----g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        ..|++|..||.... .    ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++..
T Consensus        83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~  147 (271)
T 3tzq_B           83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISSA  147 (271)
T ss_dssp             HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECCH
Confidence              78999999997522 1    1222   2345566544    44455555544 35667766654

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.92  E-value=0.0029  Score=56.42  Aligned_cols=114  Identities=16%  Similarity=0.170  Sum_probs=66.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCc---cccccC---CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQ---LGQALE---DSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d---~~~al~---~aD   98 (358)
                      +.++|.|+||+|++|.+++..|+..+.  +|++.|.+...  ....++   . ..+... .+-.|   +.++++   ..|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~-~~~~~~-~D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKEC---P-GIEPVC-VDLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHS---T-TCEEEE-CCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhc---c-CCCcEE-ecCCCHHHHHHHHHHcCCCC
Confidence            456899999999999999999999887  89999987521  111111   1 111111 11122   223333   479


Q ss_pred             EEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           99 VVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        99 iVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +||.+||.....   ..+.   ...+..|+.-    .+.+.+.+.+....+.+|+++..
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 1cyd_A           79 LLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSM  137 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             EEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcch
Confidence            999999864321   1222   2345556555    44444555444435667766653

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.92  E-value=0.0032  Score=56.82  Aligned_cols=115  Identities=14%  Similarity=0.202  Sum_probs=67.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|. ++.  .....++....  .++.... +-+|   +.+.++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999886  8999998 432  22223333221  2333322 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        +.|+||..||.....   ..+.   ...+..|+.    +.+.+.+.+.+..+.+.||+++.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              789999999864321   1222   234455543    44555555555443566776655

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=96.91  E-value=0.0021  Score=67.05  Aligned_cols=115  Identities=19%  Similarity=0.126  Sum_probs=72.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC---CccccccC--CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN---DQLGQALE--DSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aD   98 (358)
                      ++++|.|+||+|++|++++..|+..+.  +|+++|...  ......++.... ...+.... +-   +++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~v~~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLT-KHHIPFYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHH-TSCCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhcc-CCceEEEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999998886  899999764  111112221110 01121111 11   22334566  899


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +||++||.....  .....+.+..|+.....+++.+++.... .+|.+|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999864311  1123456788999999999988887644 344444

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.90  E-value=0.0073  Score=54.41  Aligned_cols=157  Identities=18%  Similarity=0.178  Sum_probs=86.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      .+.++|.|+||+|++|..++..|+..+.  +|++.|. +.  ......++.....  ++.... +-+|   ..+.+    
T Consensus        11 ~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~   86 (256)
T 3ezl_A           11 MSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGF--DFYASEGNVGDWDSTKQAFDKVK   86 (256)
T ss_dssp             --CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--eeEEEecCCCCHHHHHHHHHHHH
Confidence            3556899999999999999999999986  7888884 33  2333334433221  222221 1122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                         ...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||+++......          
T Consensus        87 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~----------  155 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQK----------  155 (256)
T ss_dssp             HHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGGG----------
T ss_pred             HhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhcc----------
Confidence               3679999999875321   2232   2345555444    566666666554 46677776654221          


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       + .+..-.++.+......+-+.+++.+.  +..|++.++
T Consensus       156 -~-~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  191 (256)
T 3ezl_A          156 -G-QFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTV  191 (256)
T ss_dssp             -S-CSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -C-CCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence             1 33333334432223345566666653  345555444

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=96.90  E-value=0.00072  Score=62.79  Aligned_cols=159  Identities=16%  Similarity=0.074  Sum_probs=90.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC---CccccccC--CCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN---DQLGQALE--DSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aDiVIi  102 (358)
                      |||.|+||+|++|++++..|+..+.  +|+++|..... ....+..     .+.... +-   +++.++++  +.|+||+
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~~~~~~-----~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~   72 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATG-KRENVPK-----GVPFFRVDLRDKEGVERAFREFRPTHVSH   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSC-CGGGSCT-----TCCEECCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcC-chhhccc-----CeEEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999998887  89999874311 0001111     111111 11   12335566  8999999


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC--------CC-cchHHHHHHHHHhCCCCCCceE
Q 018314          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP--------VN-STVPIAAEVFKKAGTYNEKKLF  171 (358)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP--------~d-~~t~~~~~~~~~sg~~~~~kvi  171 (358)
                      +|+.....  ..+....+..|+.-...+.+.+.+.... .+|.+|..        .+ .++.       ... .++...+
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E-------~~~-~~~~~~Y  143 (311)
T 2p5y_A           73 QAAQASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEE-------TWP-PRPKSPY  143 (311)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCT-------TSC-CCCCSHH
T ss_pred             CccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCC-------CCC-CCCCChH
Confidence            99754211  1233456778888888999888876543 34444321        00 0100       001 1233344


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      |.+.....++-..+++..|++..-++ ..++|..
T Consensus       144 ~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          144 AASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            44444444555555666676655555 3567753

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=96.89  E-value=0.0017  Score=65.04  Aligned_cols=104  Identities=16%  Similarity=0.163  Sum_probs=65.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-----HHHHhhcC-------CCCccEEEEecC----Ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-----VAADVGHI-------NTRSEVAGYMGN----DQL   90 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-----~~~dl~~~-------~~~~~v~~~~~~----~d~   90 (358)
                      .+++|.|+||+|++|+.++..|...+.  +|+++++.....     ....+...       ....+++...+.    .++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            467999999999999999999865554  899999876311     11111110       011245444311    122


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAK  134 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~  134 (358)
                      . +..++|+||.+|+... ...+..++...|+...+.+++.+.+
T Consensus       227 ~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~  268 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ  268 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT
T ss_pred             C-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh
Confidence            2 5689999999998643 1223345567899999999999888

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.89  E-value=0.00047  Score=66.42  Aligned_cols=76  Identities=22%  Similarity=0.220  Sum_probs=46.5

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEE
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVV  100 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiV  100 (358)
                      ..++.+.|||.|+|| |.||+.++..|....   +|.+.|++....  ..+.+..  ..+..- .+.+++.+.++++|+|
T Consensus        10 ~~~~g~~mkilvlGa-G~vG~~~~~~L~~~~---~v~~~~~~~~~~--~~~~~~~--~~~~~d~~d~~~l~~~~~~~DvV   81 (365)
T 3abi_A           10 HHIEGRHMKVLILGA-GNIGRAIAWDLKDEF---DVYIGDVNNENL--EKVKEFA--TPLKVDASNFDKLVEVMKEFELV   81 (365)
T ss_dssp             ------CCEEEEECC-SHHHHHHHHHHTTTS---EEEEEESCHHHH--HHHTTTS--EEEECCTTCHHHHHHHHTTCSEE
T ss_pred             ccccCCccEEEEECC-CHHHHHHHHHHhcCC---CeEEEEcCHHHH--HHHhccC--CcEEEecCCHHHHHHHHhCCCEE
Confidence            356678899999998 999999998887643   899999875221  1222221  112210 1123455678999999


Q ss_pred             EEcCC
Q 018314          101 IIPAG  105 (358)
Q Consensus       101 Ii~ag  105 (358)
                      |.+.+
T Consensus        82 i~~~p   86 (365)
T 3abi_A           82 IGALP   86 (365)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            99874

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.89  E-value=0.00094  Score=60.79  Aligned_cols=67  Identities=13%  Similarity=0.225  Sum_probs=46.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+|||+|||+ |.+|..++..|...+.  +|.++|+++...  .++.+..   .+..   .+|+.++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~--~~~~~~~---g~~~---~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERS--KEIAEQL---ALPY---AMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHH--HHHHHHH---TCCB---CSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHH--HHHHHHc---CCEe---eCCHHHHHhcCCEEEEEe
Confidence            3579999997 9999999999988775  899999875221  1222110   0111   235567788999999986

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.88  E-value=0.0073  Score=53.84  Aligned_cols=117  Identities=17%  Similarity=0.166  Sum_probs=67.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc---
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---   94 (358)
                      ++|.|+||+|++|..++..|+..+...     +|++.|.+..  .....++....  .++.... +-.|   +.+++   
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccC--CeeeEEEecCCCHHHHHHHHHHH
Confidence            579999999999999999998877422     7999998652  22233333211  2343332 1122   12222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 ----EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ----~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                          .+.|+||.+||.....   ..+   ....+..|+.-    .+.+.+.+++.. .+.+|+++...
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~isS~~  147 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVA  147 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEEecch
Confidence                2799999999975321   122   22344555444    444555454443 46677666543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.88  E-value=0.0079  Score=55.24  Aligned_cols=158  Identities=15%  Similarity=0.109  Sum_probs=88.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.++|.|+||+|++|.+++..|+..+.  +|++.|.++  ......++..... ..++.... +-+|   ..+.+     
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999987  899999876  2333444543321 11344332 1122   11222     


Q ss_pred             --CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 --EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                        ...|++|..||.....    ..+.   ...+..|+.-    .+...+.+.+. ..+.||+++...           -.
T Consensus        88 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~-----------~~  155 (281)
T 3svt_A           88 WHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRG-GGGSFVGISSIA-----------AS  155 (281)
T ss_dssp             HHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECCHH-----------HH
T ss_pred             HcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEeCHH-----------Hc
Confidence              2679999999863221    2222   2345556544    44455555443 356777665422           12


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+ .+..-.++.+......+-+.+|+.++  ++.|++..+
T Consensus       156 ~~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          156 NT-HRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             SC-CTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CC-CCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            22 33333444443333456667777764  445655544

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.86  E-value=0.0026  Score=58.69  Aligned_cols=119  Identities=19%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL   94 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al   94 (358)
                      +.++.-+.+++.|+||+|++|.+++..|+..+.  +|++.|+++.  .....++.     .++.... +-+|   ..+.+
T Consensus        20 ~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~   92 (277)
T 4dqx_A           20 FQSMDLNQRVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIG-----SKAFGVRVDVSSAKDAESMV   92 (277)
T ss_dssp             --CCTTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHH
T ss_pred             cccCCCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHH
Confidence            444555567899999999999999999999987  8999998752  22222221     1222221 1112   12222


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                             ...|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+++. ..+.||+++..
T Consensus        93 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  161 (277)
T 4dqx_A           93 EKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTSY  161 (277)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECCG
T ss_pred             HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECch
Confidence                   3789999999964321   2222   2344556544    44555555443 34667766653

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=96.86  E-value=0.00018  Score=65.47  Aligned_cols=150  Identities=13%  Similarity=0.092  Sum_probs=82.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEE-EecCCccc-------cccCCCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG-YMGNDQLG-------QALEDSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-~~~~~d~~-------~al~~aDiV  100 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|+++....     ..    .+.. .++.++..       +.+...|+|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~-----~~----~~~~d~~d~~~v~~~~~~~~~~~g~iD~l   91 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNA-----DH----SFTIKDSGEEEIKSVIEKINSKSIKVDTF   91 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTS-----SE----EEECSCSSHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCccccc-----cc----ceEEEeCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999987  8999998762110     00    0110 00111111       223456999


Q ss_pred             EEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          101 IIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       101 Ii~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |..||.....    ..+   -...+..|+.-...+.+.+.++- +++.||+++.....           .+ .+..-.++
T Consensus        92 i~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~~-~~~~~~Y~  159 (251)
T 3orf_A           92 VCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL-----------NR-TSGMIAYG  159 (251)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------SC-CTTBHHHH
T ss_pred             EECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc-----------cC-CCCCchhH
Confidence            9999864321    121   23345567666666666655543 34667766654321           11 22222333


Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+......+-+.+++.++..+..|++.++
T Consensus       160 ~sKaa~~~~~~~la~e~~~~~~gi~v~~v  188 (251)
T 3orf_A          160 ATKAATHHIIKDLASENGGLPAGSTSLGI  188 (251)
T ss_dssp             HHHHHHHHHHHHHTSTTSSSCTTCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCcEEEEE
Confidence            33222234455555555433566766555

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=96.86  E-value=0.0068  Score=55.36  Aligned_cols=118  Identities=14%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE----   95 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~----   95 (358)
                      -+.++|.|+||+|++|..++..|+..+.  +|++.|.+..  ......+....  .++.... +-+|   +.+.++    
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~  107 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEK  107 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHH
Confidence            3456899999999999999999998886  8999998762  22222222111  1233221 1122   222333    


Q ss_pred             ---CCCEEEEcCCCCCC--C---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 ---DSDVVIIPAGVPRK--P---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 ---~aDiVIi~ag~~~~--~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                         ..|+||..||....  +   ..+   -...+..|+.-    .+.+.+.+++.. .+.+|+++...
T Consensus       108 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~~  174 (279)
T 3ctm_A          108 DFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSIS  174 (279)
T ss_dssp             HHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCCT
T ss_pred             HhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECchH
Confidence               48999999986432  1   111   12344555544    667777777654 34566665543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.86  E-value=0.004  Score=58.68  Aligned_cols=120  Identities=20%  Similarity=0.188  Sum_probs=70.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.......++.... +-+|   ..+++      
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   84 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR   84 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999987  8999998762  22233333222112343332 1122   12223      


Q ss_pred             -CCCCEEEEcCCCCCC-C--CCC---HHHHHHHH----HHHHHHHHHHHHhh-----CCCeEEEEeeCCC
Q 018314           95 -EDSDVVIIPAGVPRK-P--GMT---RDDLFNIN----AGIVKDLCSAIAKY-----CPNAIVNMISNPV  148 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~-~--g~~---r~~~~~~N----~~i~~~i~~~i~~~-----~p~a~iiv~tNP~  148 (358)
                       ...|+||.+||.... +  ..+   -...+.-|    ..+.+.+.+.+.+.     ...+.||+++.-.
T Consensus        85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a  154 (319)
T 3ioy_A           85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMA  154 (319)
T ss_dssp             TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGG
T ss_pred             CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccc
Confidence             356999999996432 1  122   22344455    44455566666554     2356677666543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.85  E-value=0.011  Score=54.46  Aligned_cols=118  Identities=19%  Similarity=0.172  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC------------------cHHHHHHhhcCCCCccEEEEe-cC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN------------------TPGVAADVGHINTRSEVAGYM-GN   87 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~------------------~~~~~~dl~~~~~~~~v~~~~-~~   87 (358)
                      +.+.+.|+||+|++|..++..|+..+.  .|++.|++.                  ......++....  .++.... +-
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv   85 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDV   85 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCC
Confidence            345899999999999999999999987  899999861                  111122222222  2343332 11


Q ss_pred             Cc---ccccc-------CCCCEEEEcCCCCCCCC----CCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           88 DQ---LGQAL-------EDSDVVIIPAGVPRKPG----MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        88 ~d---~~~al-------~~aDiVIi~ag~~~~~g----~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +|   ..+.+       ...|++|..||......    .+.   ...+..|    ..+.+.+.+.+.+....+.||+++.
T Consensus        86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  165 (286)
T 3uve_A           86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSS  165 (286)
T ss_dssp             TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECc
Confidence            22   12222       37899999999743221    232   2334445    4455666667766666677777765


Q ss_pred             CC
Q 018314          147 PV  148 (358)
Q Consensus       147 P~  148 (358)
                      ..
T Consensus       166 ~~  167 (286)
T 3uve_A          166 VG  167 (286)
T ss_dssp             GG
T ss_pred             hh
Confidence            43

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.85  E-value=0.0085  Score=54.87  Aligned_cols=117  Identities=21%  Similarity=0.235  Sum_probs=72.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------------cHHHHHHhhcCCCCccEEEEe-cCCc--
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|+++|++.              ......++....  .++.... +-.|  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   84 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRA   84 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHH
Confidence            345799999999999999999999987  899999861              111122232222  2333322 1122  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCC-CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           90 -LGQAL-------EDSDVVIIPAGVPRKP-GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        90 -~~~al-------~~aDiVIi~ag~~~~~-g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                       ..+.+       ...|++|..||..... ..+   -...+..|+.-...+.+.+..+- ..+.||+++.-
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           85 AVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             11222       2789999999874322 122   23556778777777777776654 45667766553

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.84  E-value=0.0023  Score=58.22  Aligned_cols=112  Identities=21%  Similarity=0.261  Sum_probs=66.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..     ++.... +-+|   +.++++      
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~v~~~~~~~~~~~   84 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN-----GGFAVEVDVTKRASVDAAMQKAIDAL   84 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT-----CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc-----CCeEEEEeCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  222222221     122111 1122   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       +.|+||..||.....   ..+.   ...+..|+.    +.+...+.+.+....+.|++++.
T Consensus        85 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           85 GGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence             799999999864321   1222   234455543    44555555554442466666654

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=96.84  E-value=0.00075  Score=58.70  Aligned_cols=111  Identities=17%  Similarity=0.176  Sum_probs=67.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccC---CCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVIi~  103 (358)
                      ++|.|+||+|++|..++..|+..    +|++.|+++.  .....++.......++.   +.+++.++++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADLA---DELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCTT---SHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeCC---CHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999998877    7999998652  22222222100001110   1122334455   89999999


Q ss_pred             CCCCCCC------CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          104 AGVPRKP------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       104 ag~~~~~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ||.....      ..+....+..|+.-...+.+.+.+. +.+.+|+++..
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS~  122 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGAY  122 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECCC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcCh
Confidence            9864321      1223456677888777777777332 34566666543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.84  E-value=0.0026  Score=53.09  Aligned_cols=101  Identities=10%  Similarity=0.005  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHH-HHHHhhcCCCCccEEEEecC--Ccccc-ccCCCCEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPG-VAADVGHINTRSEVAGYMGN--DQLGQ-ALEDSDVVII  102 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~-~~~dl~~~~~~~~v~~~~~~--~d~~~-al~~aDiVIi  102 (358)
                      ..||.|+|+ |.+|+.++..|...+.  +++++|.+. ... ...+.....  ..+.....+  ..+.+ .+++||.||+
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~--~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN--ADVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT--CEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCC--CeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence            458999997 9999999999998886  899999864 211 111111111  111111111  11233 3899999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeCCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPV  148 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-~tNP~  148 (358)
                      +.+.           -..|..    ++...++.+|+..++. +.||.
T Consensus        78 ~~~~-----------d~~n~~----~~~~a~~~~~~~~ii~~~~~~~  109 (153)
T 1id1_A           78 LSDN-----------DADNAF----VVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             CSSC-----------HHHHHH----HHHHHHHHTSSSCEEEECSSGG
T ss_pred             ecCC-----------hHHHHH----HHHHHHHHCCCCEEEEEECCHH
Confidence            8632           124433    3444555667665554 45554

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=96.83  E-value=0.0095  Score=54.53  Aligned_cols=162  Identities=13%  Similarity=0.115  Sum_probs=87.1

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL   94 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al   94 (358)
                      .+|..+.+.+.|+||+|++|..++..|+..+.  +|++.+.+.   ......++....  .++.... +-+|   ..+.+
T Consensus        21 ~~m~~~~k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~   96 (267)
T 3u5t_A           21 QSMMETNKVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLF   96 (267)
T ss_dssp             ------CCEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHH
T ss_pred             cccccCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHH
Confidence            33444556799999999999999999999886  788875544   222233333322  1233221 1122   12222


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHH
Q 018314           95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        95 -------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                             ...|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- +.+.||+++....           
T Consensus        97 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------  165 (267)
T 3u5t_A           97 ATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV-----------  165 (267)
T ss_dssp             HHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH-----------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh-----------
Confidence                   3789999999974321   1222   3345567665555555544432 3467776664321           


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..+ .|..-.++.+......+-+.++..++  +..|++..+
T Consensus       166 ~~~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          166 GLL-HPSYGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             HHC-CTTCHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             ccC-CCCchHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            112 33333444443333456677777764  556665544

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.83  E-value=0.0084  Score=53.59  Aligned_cols=115  Identities=18%  Similarity=0.199  Sum_probs=67.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-------   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-------   95 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.... ..++.... +-+|   +.++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHAY-ADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999886  8999998752  22223331111 12344332 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCC------CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP------GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~------g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|+||..||.....      ..+.   ...+..|+.    +.+.+.+.+.+.. .+.+|+++..
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS~  143 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIASV  143 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            789999999864321      1122   234455543    3455666665554 4566666543

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=96.83  E-value=0.0011  Score=60.88  Aligned_cols=102  Identities=14%  Similarity=0.096  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCC--CCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALED--SDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~--aDiVIi~a  104 (358)
                      ++|||.|+||+|++|+.++..|...+..........   .....|+.+            .+++.+++++  +|+||++|
T Consensus         5 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih~A   69 (319)
T 4b8w_A            5 QSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIHLA   69 (319)
T ss_dssp             CCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEECC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEECc
Confidence            467999999999999999999998875100000000   000011111            1223455665  99999999


Q ss_pred             CCCCC---CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314          105 GVPRK---PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus       105 g~~~~---~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      +....   ......+.+..|+.....+.+.+++...+- +|.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~v~~  111 (319)
T 4b8w_A           70 AMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARK-VVSC  111 (319)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEE
T ss_pred             eecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEE
Confidence            86421   123456778899999999999998887543 4433

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.82  E-value=0.0087  Score=54.61  Aligned_cols=158  Identities=14%  Similarity=0.158  Sum_probs=88.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++.... +-+|   ..+.+      
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  223333343211 11233322 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+....+.||+++.-....           +
T Consensus        96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~  164 (266)
T 4egf_A           96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA-----------P  164 (266)
T ss_dssp             HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------C
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc-----------C
Confidence             3789999999975422   1222   23344553    45566677777666667777776543211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.+++.++  ++.|++..+
T Consensus       165 -~~~~~~Y~asK~a~~~l~~~la~e~~--~~gI~vn~v  199 (266)
T 4egf_A          165 -LPDHYAYCTSKAGLVMATKVLARELG--PHGIRANSV  199 (266)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence             22222333332223345566666653  445655444

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.82  E-value=0.0047  Score=56.18  Aligned_cols=117  Identities=20%  Similarity=0.203  Sum_probs=69.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++.... +-+|   ..+.+      
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAA  103 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999987  899999876  233333443322  2333332 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 -EDSDVVIIPAGVPRKP----GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                       ...|+||..||.....    ..+.   ...+..|+.    +.+.+.+.+.+. ..+.||+++...
T Consensus       104 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  168 (262)
T 3rkr_A          104 HGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLA  168 (262)
T ss_dssp             HSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSC
T ss_pred             cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechh
Confidence             3589999999873221    1222   234455544    445555555543 356677776554

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.81  E-value=0.017  Score=52.40  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCC-ChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAG-GIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G-~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.+++.|+||+| .+|..++..|+..+.  +|++.|.+.  ......++.... ..++..+. +-+|   ..+.+     
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHH
Confidence            456899999877 699999999999987  899999876  223333443322 12444432 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        ..-|++|..||.....   ..+.   ...+..|    ..+.+.+.+.+++....+.|++++..
T Consensus        98 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  162 (266)
T 3o38_A           98 KAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASV  162 (266)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCG
T ss_pred             HhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCH
Confidence              2679999999964322   1232   2334445    44555666666655566777766543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.81  E-value=0.0014  Score=60.44  Aligned_cols=153  Identities=14%  Similarity=0.148  Sum_probs=85.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+.+.|+||+|++|..++..|+..+.  +|++.|.+.  ......++..     ++.... +-+|   ..+.+       
T Consensus        28 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~  100 (272)
T 4dyv_A           28 KKIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGD-----DALCVPTDVTDPDSVRALFTATVEKF  100 (272)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTS-----CCEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----CeEEEEecCCCHHHHHHHHHHHHHHc
Confidence            34678889999999999999999987  899999875  2222333321     122211 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAG----IVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      ...|++|..||....  +  ..+.   ...+..|+.    +.+.+.+.+.+..+ .+.||+++.-....           
T Consensus       101 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~-----------  169 (272)
T 4dyv_A          101 GRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS-----------  169 (272)
T ss_dssp             SCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS-----------
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC-----------
Confidence            379999999997432  1  2222   234555544    46667777766553 57777776544321           


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       170 ~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  205 (272)
T 4dyv_A          170 P-RPYSAPYTATKHAITGLTKSTSLDGR--VHDIACGQI  205 (272)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C-CCCchHHHHHHHHHHHHHHHHHHHhC--ccCEEEEEE
Confidence            1 22222333332223345566666653  445555444

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.80  E-value=0.013  Score=52.84  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|++.  ......++....  .++..+. +-+|.   .++       +
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  899999875  222233343222  1333322 11221   122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+..  +.||+++.-
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  143 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSSI  143 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEccH
Confidence            3789999999864321   2232   23345554    34455555555544  667766653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.80  E-value=0.0056  Score=55.54  Aligned_cols=117  Identities=11%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.... ..++.... +-+|   +.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22223332210 11233221 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        +.|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++..
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  145 (263)
T 3ai3_A           83 FGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNASI  145 (263)
T ss_dssp             HSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECch
Confidence              789999999864321   1222   23344454    34555556555543 4566666543

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.78  E-value=0.0042  Score=55.27  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=67.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccccC--------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE--------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~--------   95 (358)
                      +++|.|+||+|++|..++..|+..+...+|++.|.+.....  ++.+.. ..++.... +-+|   +.++++        
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~--~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   79 (250)
T 1yo6_A            3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH--HHHhcc-CCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence            45899999999999999999999882128999998752211  122211 12344332 1122   223333        


Q ss_pred             -CCCEEEEcCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHhh------C----CCeEEEEeeCCC
Q 018314           96 -DSDVVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKDLCSAIAKY------C----PNAIVNMISNPV  148 (358)
Q Consensus        96 -~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~------~----p~a~iiv~tNP~  148 (358)
                       +.|+||.+||...  .+  ..+.   ...+..|+    .+.+.+.+.+.+.      .    +.+.+|+++...
T Consensus        80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~  154 (250)
T 1yo6_A           80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL  154 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGG
T ss_pred             CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCc
Confidence             8999999998654  11  1222   23444554    3444555555544      2    145667666543

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.78  E-value=0.0049  Score=55.90  Aligned_cols=116  Identities=15%  Similarity=0.178  Sum_probs=68.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++..   ....++.... ..++.... +-+|   +.+.+      
T Consensus         4 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~   80 (260)
T 1x1t_A            4 GKVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhcc-CCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  89999987622   1122332110 11233221 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++..
T Consensus        81 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (260)
T 1x1t_A           81 MGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASA  143 (260)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcH
Confidence             3789999999975321   1222   234555654    5566666666554 4667767654

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.78  E-value=0.0057  Score=55.63  Aligned_cols=157  Identities=13%  Similarity=0.113  Sum_probs=87.9

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCc---ccccc-------
Q 018314           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------   94 (358)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|+++ ......++........... .+-+|   ..+.+       
T Consensus         9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   85 (265)
T 1qsg_A            9 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQ-CDVAEDASIDTMFAELGKVW   85 (265)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEE-ccCCCHHHHHHHHHHHHHHc
Confidence            3579999998  8999999999999987  899999875 2223333322110111111 11122   22222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--C-CC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 EDSDVVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-----~--g-~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      ...|++|..||....     +  . .+   ....+..|+.-...+.+.+.++- +.+.||+++.....           .
T Consensus        86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~  154 (265)
T 1qsg_A           86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------R  154 (265)
T ss_dssp             SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------S
T ss_pred             CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc-----------c
Confidence            267999999997542     1  1 22   23456677777777777766553 24677777653211           1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-+.+++.++  ++.|++.++
T Consensus       155 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (265)
T 1qsg_A          155 A-IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  190 (265)
T ss_dssp             B-CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             C-CCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            1 23333334433223445566676663  455655444

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.78  E-value=0.0035  Score=57.12  Aligned_cols=113  Identities=17%  Similarity=0.199  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..     .+.... +-+   ++.++++     
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~   78 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTA   78 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  222223321     122221 111   2223343     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        +.|++|..||.....   ..+.   ...+..|+.-.    +.+.+.+++.. .+.||+++..
T Consensus        79 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  141 (260)
T 1nff_A           79 FGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSI  141 (260)
T ss_dssp             HSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEeeh
Confidence              799999999864321   1222   23455554443    66666666554 4566766543

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.78  E-value=0.007  Score=54.78  Aligned_cols=118  Identities=14%  Similarity=0.084  Sum_probs=66.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      -+.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-.|   +.+.+     
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   87 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSS   87 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999999887  8999998752  22223333222  1333322 1122   12222     


Q ss_pred             ---CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHhhCCCeEEEEeeCCC
Q 018314           95 ---EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~iiv~tNP~  148 (358)
                         .+.|+||..||.....   ..+.   ...+..|+.-...+    .+.+++.. .+.+|+++...
T Consensus        88 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~  153 (266)
T 1xq1_A           88 MFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIA  153 (266)
T ss_dssp             HHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC---
T ss_pred             HhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccch
Confidence               5789999999864321   1222   23455665544444    44445544 34566666543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.77  E-value=0.0065  Score=55.21  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|++.  ......++....  .++.... +-+|.   .+.       
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   81 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  222233443322  2333322 11221   111       


Q ss_pred             cCCCCEEEEcCCCC-C-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVP-R-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~-~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...|++|..||.. . .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.
T Consensus        82 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           82 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            23789999999864 2 11  1222   233445544    4455555555443 466676654

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.77  E-value=0.0091  Score=54.79  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC-------------C--cHHHHHHhhcCCCCccEEEEe-cCCc-
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-------------N--TPGVAADVGHINTRSEVAGYM-GNDQ-   89 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~-------------~--~~~~~~dl~~~~~~~~v~~~~-~~~d-   89 (358)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|++             +  ......++....  .++.... +-+| 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~   89 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDD   89 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCH
Confidence            345799999999999999999999987  89999973             1  122223333322  2333322 1122 


Q ss_pred             --ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           90 --LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        90 --~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                        ..+.+       ...|++|..||.....   ..+.   ...+..|    ..+.+.+.+.+.+....+.||+++...
T Consensus        90 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (280)
T 3pgx_A           90 AALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA  167 (280)
T ss_dssp             HHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence              12222       3789999999975321   1222   2234445    445666777777766567777776543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=96.76  E-value=0.0011  Score=62.73  Aligned_cols=91  Identities=15%  Similarity=0.162  Sum_probs=56.6

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM   85 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~   85 (358)
                      |...+|-+-.+.+.+++.. ...++|+|||+ |.+|..++..|.......+|.+||+++....  ++.+.... ++..  
T Consensus       114 lt~~rT~a~~~la~~~la~-~~~~~igiIG~-G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~--~l~~~~~~-~~~~--  186 (312)
T 2i99_A          114 ITAKRTAAVSAIATKFLKP-PSSEVLCILGA-GVQAYSHYEIFTEQFSFKEVRIWNRTKENAE--KFADTVQG-EVRV--  186 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHSC-TTCCEEEEECC-SHHHHHHHHHHHHHCCCSEEEEECSSHHHHH--HHHHHSSS-CCEE--
T ss_pred             HHHHHHHHHHHHHHHHhCC-CCCcEEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHH--HHHHHhhC-CeEE--
Confidence            4444555444444444432 25679999997 9999999988876522458999998752221  22211100 2333  


Q ss_pred             cCCccccccCCCCEEEEcC
Q 018314           86 GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~a  104 (358)
                       .+++.+++++||+||++.
T Consensus       187 -~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          187 -CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             -CSSHHHHHTTCSEEEECC
T ss_pred             -eCCHHHHHhcCCEEEEEe
Confidence             245678899999999875

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.76  E-value=0.0016  Score=60.23  Aligned_cols=64  Identities=19%  Similarity=0.268  Sum_probs=47.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|..++..|...++  +|++||+++...  ..+...    .+..   ++++.++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~--~~~~~~----g~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDAC--KEFQDA----GEQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHH--HHHHTT----TCEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHc----CCee---cCCHHHHHhcCCEEEEeC
Confidence            58999997 9999999999998886  899999876322  223322    1332   245567789999999985

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.75  E-value=0.011  Score=52.40  Aligned_cols=114  Identities=18%  Similarity=0.221  Sum_probs=65.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCC---ccccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GND---QLGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~------   95 (358)
                      ++++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.... ..++.... +-+   +..+.++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999987  899999875  223333333111 11233221 111   2222333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                       ..|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.  .+.+|+++.
T Consensus        79 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~ii~~sS  138 (235)
T 3l77_A           79 GDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRT--GGLALVTTS  138 (235)
T ss_dssp             SSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             CCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCcEEEEec
Confidence             789999999974322   1232   233445543    445555555332  334454443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.75  E-value=0.01  Score=55.16  Aligned_cols=157  Identities=11%  Similarity=0.066  Sum_probs=87.2

Q ss_pred             CCceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEE-ecCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGY-MGNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~-~~~~d---~~~al-----   94 (358)
                      +.+++.|+||+|  ++|..++..|+..+.  +|++.|.++. .....++.....  .+... .+-+|   ..+.+     
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  104 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLG--VKLTVPCDVSDAESVDNMFKVLAE  104 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEcCCCCHHHHHHHHHHHHH
Confidence            456899999976  999999999999987  8999998762 222222211110  11111 11122   22222     


Q ss_pred             --CCCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 --EDSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                        ...|++|..||....     +  ..+.   ...+..|+.-...+.+.+..+- ..+.||+++.....           
T Consensus       105 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~-----------  173 (296)
T 3k31_A          105 EWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE-----------  173 (296)
T ss_dssp             HHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----------
T ss_pred             HcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc-----------
Confidence              367999999997531     1  2332   3456677776666776666554 35777777654321           


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+ .+..-.++.+.-.-..+-+.+|..++  +..|++..+
T Consensus       174 ~~-~~~~~~Y~asKaal~~l~~~la~e~~--~~gIrvn~v  210 (296)
T 3k31_A          174 KV-VPHYNVMGVCKAALEASVKYLAVDLG--KQQIRVNAI  210 (296)
T ss_dssp             SC-CTTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             cC-CCCchhhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            11 22223333332223345566666663  445655444

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.75  E-value=0.016  Score=53.11  Aligned_cols=156  Identities=16%  Similarity=0.210  Sum_probs=86.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCccc---c------ccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQLG---Q------ALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~~---~------al~   95 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++ ......++....  .++.... +-+|..   +      ...
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcC
Confidence            456899999999999999999999987  899999554 333344444322  2333332 112211   1      123


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      ..|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.....           .+ .
T Consensus       106 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~-----------~~-~  172 (273)
T 3uf0_A          106 RVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIASMLSF-----------QG-G  172 (273)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------SC-C
T ss_pred             CCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchHhc-----------CC-C
Confidence            789999999975322   1222   234455543    4455556666554 4667766654321           11 2


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +..-.++.+......+-+.+|..++  +..|++..+
T Consensus       173 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  206 (273)
T 3uf0_A          173 RNVAAYAASKHAVVGLTRALASEWA--GRGVGVNAL  206 (273)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            2222233332223345566666653  445655444

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.75  E-value=0.0046  Score=54.90  Aligned_cols=112  Identities=17%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|.++.  .....++.      ++.... +-.|   +.+.+       
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~   76 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELE------GALPLPGDVREEGDWARAVAAMEEAF   76 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhh------hceEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999887  8999998652  11222221      111111 1112   11222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .+.|+||..||.....   ..+   -.+.+..|+.-.    +.+.+.+++.. .+.||+++...
T Consensus        77 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~  139 (234)
T 2ehd_A           77 GELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG-GGTIVNVGSLA  139 (234)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCTT
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CcEEEEECCch
Confidence            3789999999864321   122   233455555443    45555555443 46677666543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.74  E-value=0.0091  Score=54.11  Aligned_cols=157  Identities=13%  Similarity=0.051  Sum_probs=86.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-+|   ..+++      
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANH   83 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22233343221  2333322 1122   12222      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                        ...|++|..||.....   ..+.   ...+..|+.-    .+...+.+++. ..+.||+++.....           .
T Consensus        84 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------~  151 (260)
T 2ae2_A           84 FHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGA-----------L  151 (260)
T ss_dssp             TTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGT-----------S
T ss_pred             cCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc-----------c
Confidence              5799999999965321   1222   2345556444    44444444443 34667766653311           1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      + .|..-.++.+......+-+.+++.++  +..|++.++.
T Consensus       152 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          152 A-VPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             C-CCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            1 22222333332223445566666653  4556665553

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.74  E-value=0.0069  Score=54.83  Aligned_cols=114  Identities=16%  Similarity=0.206  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-+|   ..+.+       
T Consensus        14 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           14 NKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  22233343222  1233221 1122   22223       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .+.|++|..||....  +  ..+.   ...+..|+.-    .+.+.+.+++.. .+.||+++.
T Consensus        90 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  151 (260)
T 2zat_A           90 GGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG-GGSVLIVSS  151 (260)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEec
Confidence            279999999986421  1  1222   2345555444    455555555443 456666654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.73  E-value=0.0074  Score=55.45  Aligned_cols=156  Identities=14%  Similarity=0.096  Sum_probs=82.8

Q ss_pred             CceEEEEcCCCC--hHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~--vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .++|.|+||+|+  +|..++..|+..+.  +|++.|.+.......++.....  ++.... +-+|   ..+.       +
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFN--PAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGC--CSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcC--CceEEEeecCCHHHHHHHHHHHHHHc
Confidence            458999998855  99999999999987  8999998763333344432221  122211 1122   1222       2


Q ss_pred             CCCCEEEEcCCCCCCC---C-----CCH---HHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 EDSDVVIIPAGVPRKP---G-----MTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g-----~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                      ..-|++|..||.....   +     .+.   ...+..|+.-...+.+.+..+-  ..+.||+++......          
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~----------  171 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK----------  171 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS----------
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc----------
Confidence            3569999999975321   1     222   2345556544444444433321  256777776543211          


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       + .+..-.++.+......+-+.+++.++  +..|++..+
T Consensus       172 -~-~~~~~~Y~asKaal~~~~~~la~e~~--~~gi~v~~v  207 (280)
T 3nrc_A          172 -A-MPSYNTMGVAKASLEATVRYTALALG--EDGIKVNAV  207 (280)
T ss_dssp             -C-CTTTHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -C-CCCchhhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence             1 23323333332223345566666653  445655544

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.73  E-value=0.021  Score=51.47  Aligned_cols=156  Identities=17%  Similarity=0.194  Sum_probs=84.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC--Cc---cccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN--DQ---LGQA-----   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~--~d---~~~a-----   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++..... .++..+. +-  .|   ..+.     
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~   87 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIA   87 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  2222333322111 0111111 11  11   1112     


Q ss_pred             --cCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHH
Q 018314           94 --LEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        94 --l~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                        +...|++|..||...  .+  ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++......         
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~~---------  157 (252)
T 3f1l_A           88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD-AGSLVFTSSSVGRQ---------  157 (252)
T ss_dssp             HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGTS---------
T ss_pred             HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC-CCEEEEECChhhcc---------
Confidence              237899999999632  12  2232   234455544    4455555555443 45667665543211         


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        + .+..-.++.+......+-+.+|+.++  +. |++..+
T Consensus       158 --~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v  192 (252)
T 3f1l_A          158 --G-RANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCI  192 (252)
T ss_dssp             --C-CTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEE
T ss_pred             --C-CCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEE
Confidence              1 22222333332223455677777774  33 666554

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.73  E-value=0.011  Score=55.63  Aligned_cols=117  Identities=15%  Similarity=0.227  Sum_probs=70.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------------cHHHHHHhhcCCCCccEEEEe-cCCc---
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ---   89 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d---   89 (358)
                      .+.+.|+||+|++|..++..|+..+.  +|+++|.+.              .......+....  .++.... +-+|   
T Consensus        46 gk~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           46 GKVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLAS  121 (317)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            45788999999999999999999987  899998751              111112222221  2333322 1122   


Q ss_pred             ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           90 LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        90 ~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..+.+       ...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+....+.||+++...
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~  197 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTV  197 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHH
Confidence            12222       3789999999975321   2232   23345554    45566666666666667777776543

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.73  E-value=0.006  Score=55.39  Aligned_cols=154  Identities=16%  Similarity=0.202  Sum_probs=87.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCccc----------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQLG----------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~~----------~a   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.     .++.... +-+|..          +.
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFG-----PRVHALRSDIADLNEIAVLGAAAGQT   79 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CcceEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998752  22222221     1222221 112211          12


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      +...|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- ..+.||+++......           + .|
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~-----------~-~~  147 (255)
T 4eso_A           80 LGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG-----------G-HP  147 (255)
T ss_dssp             HSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS-----------B-CT
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC-----------C-CC
Confidence            34789999999975422   1232   3446677766666666665543 346777776543211           1 22


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+.-....+-+.++..+  .+..|++..+
T Consensus       148 ~~~~Y~asKaa~~~~~~~la~e~--~~~gi~vn~v  180 (255)
T 4eso_A          148 GMSVYSASKAALVSFASVLAAEL--LPRGIRVNSV  180 (255)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHT--GGGTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHH--hhhCcEEEEE
Confidence            22223333222334566677765  3455665544

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.73  E-value=0.0084  Score=53.34  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCCc--HHHHHHhhcCCCCccEEE-E-ecCCc---cccc-------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAG-Y-MGNDQ---LGQA-------   93 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~~--~~~~~dl~~~~~~~~v~~-~-~~~~d---~~~a-------   93 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++. +.+..  .....++.....  ++.. . .+-+|   +.++       
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   77 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGS--PLVAVLGANLLEAEAATALVHQAAEV   77 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTC--SCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEeccCCCHHHHHHHHHHHHHh
Confidence            4799999999999999999999886  88887 66542  222233332221  2221 1 11122   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.+.|+||..||.....   ..+   ....+..|+.-    .+.+.+.+++.. .+.+|+++..
T Consensus        78 ~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS~  140 (245)
T 2ph3_A           78 LGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITSV  140 (245)
T ss_dssp             HTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeCh
Confidence            34789999999875321   122   23445566555    666666666554 4566666543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.72  E-value=0.0012  Score=60.14  Aligned_cols=97  Identities=11%  Similarity=0.099  Sum_probs=59.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-c---CCccccccCCCCEEEEc
Q 018314           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-G---NDQLGQALEDSDVVIIP  103 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~aDiVIi~  103 (358)
                      ||.|+||+|++|++++..|...  +.  +|+.++.+.....  ++.+.    .++... +   .+++.++++++|+||++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~--~~~~~----~~~~~~~D~~d~~~~~~~~~~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQ--ALAAQ----GITVRQADYGDEAALTSALQGVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCH--HHHHT----TCEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhh--hhhcC----CCeEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            5899999999999999999887  54  8999998652211  11111    111111 1   12345688999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ++...          ..|+...+.+.+.+++....- +|.+|
T Consensus        73 a~~~~----------~~~~~~~~~l~~a~~~~~~~~-~v~~S  103 (286)
T 2zcu_A           73 SSSEV----------GQRAPQHRNVINAAKAAGVKF-IAYTS  103 (286)
T ss_dssp             C------------------CHHHHHHHHHHHHTCCE-EEEEE
T ss_pred             CCCCc----------hHHHHHHHHHHHHHHHcCCCE-EEEEC
Confidence            87531          146667778888888776433 44443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.72  E-value=0.0038  Score=59.52  Aligned_cols=63  Identities=22%  Similarity=0.263  Sum_probs=46.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+||+|||+ |.+|.+++..|...+.  +|+++|.+...  ..+.+.   .    +...    ++.+++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~~~a~~~---G----~~~~----~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATVAKAEAH---G----LKVA----DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHHHHHHHT---T----CEEE----CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHHHC---C----CEEc----cHHHHHhcCCEEEEeC
Confidence            468999997 9999999999998886  89999987532  222211   1    2221    3457889999999985

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.71  E-value=0.0049  Score=55.41  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=69.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|. ++  ......++....  .++.... +-+|   ..+.+      
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999887  8999998 43  222233333222  1333322 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       .+.|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+++.. .+.||+++..
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIASV  142 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCH
Confidence             2799999999975321   1222   2345556544    566666666554 4566766543

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.71  E-value=0.0027  Score=58.17  Aligned_cols=123  Identities=25%  Similarity=0.373  Sum_probs=69.7

Q ss_pred             cccccCCC-CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---c
Q 018314           18 ARGYSSES-VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---L   90 (358)
Q Consensus        18 ~~~~~~~~-~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~   90 (358)
                      ..++.+|. -+.+++.|+||+|++|..++..|+..+.  .|++.|.++.  .....++.     .++.... +-+|   .
T Consensus        16 ~~g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v   88 (266)
T 3grp_A           16 TQGPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLG-----KDVFVFSANLSDRKSI   88 (266)
T ss_dssp             -----CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHH
T ss_pred             CCCCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceEEEEeecCCHHHH
Confidence            33444443 3456899999999999999999999987  8999998752  22222221     1233221 1122   1


Q ss_pred             ccc-------cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           91 GQA-------LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        91 ~~a-------l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .+.       +...|++|..||.....   ..+   -...+..|+.-    .+.+.+.+.+.. .+.||+++.-.
T Consensus        89 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~  162 (266)
T 3grp_A           89 KQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIV  162 (266)
T ss_dssp             HHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC-
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHH
Confidence            122       23789999999975321   122   22345556554    666666666554 46677666544

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.71  E-value=0.012  Score=53.17  Aligned_cols=112  Identities=18%  Similarity=0.190  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.     .++.... +-+|   ..++++      
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (254)
T 1hdc_A            5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELG-----DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTG-----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhC-----CceeEEEecCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  22222221     1232221 1122   222233      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       +.|++|..||.....   ..+.   ...+..|+    ...+.+.+.+++.. .+.||+++..
T Consensus        78 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  139 (254)
T 1hdc_A           78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSA  139 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECch
Confidence             799999999865321   1222   23445554    34456777776654 4566766553

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.70  E-value=0.004  Score=55.58  Aligned_cols=116  Identities=17%  Similarity=0.239  Sum_probs=67.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCC---ccccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GND---QLGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~---d~~~al~-----   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++..  .....++.... ..++.... +-.   ++.++++     
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANKY-GVKAHGVEMNLLSEESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhhc-CCceEEEEccCCCHHHHHHHHHHHHHh
Confidence            345899999999999999999999886  8999998652  22222332100 11233221 112   2223333     


Q ss_pred             --CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRKP---GMT---RDDLFNINAGIV----KDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tN  146 (358)
                        +.|+||..||.....   ..+   ..+.+..|+.-.    +.+.+.+.+.. .+.+|+++.
T Consensus        83 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  144 (248)
T 2pnf_A           83 VDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISS  144 (248)
T ss_dssp             SSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              899999999865321   122   234455665555    55555555443 355666553

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.69  E-value=0.0068  Score=55.79  Aligned_cols=116  Identities=14%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.... ..++.... +-+|   ..+.+      
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC-CCceEEEeCCCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999886  8999998752  22222232211 11333322 1122   11222      


Q ss_pred             -CCCCEEEEc-CCCCCCC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIP-AGVPRKP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~-ag~~~~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       .+.|+||.. +|....+  ..+.   ...+..|+.    +.+.+.+.+++.  .+.||+++..
T Consensus       104 ~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~--~g~iv~isS~  165 (286)
T 1xu9_A          104 MGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSL  165 (286)
T ss_dssp             HTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEG
T ss_pred             cCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC--CCEEEEECCc
Confidence             378999998 6754322  1222   234455544    344445544443  3566666543

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.69  E-value=0.01  Score=54.53  Aligned_cols=116  Identities=19%  Similarity=0.164  Sum_probs=71.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+..   .....++....  .++.... +-+|   ..++      
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~  103 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVK  103 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752   22223333222  1233221 1122   1111      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeC
Q 018314           94 -LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISN  146 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tN  146 (358)
                       +...|++|..||.....   ..+   -...+..|+.-...+.+.+.++ ...+.||+++.
T Consensus       104 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          104 IFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence             24789999999975321   122   2345667777666666666655 24566776654

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.68  E-value=0.0012  Score=62.68  Aligned_cols=95  Identities=16%  Similarity=0.173  Sum_probs=64.1

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~   83 (358)
                      ..|-..+|-|-.+-+-++++.+ ...+|+|||+ |.+|...+..|.....+.+|.+||++.+...+.++.+.. ...+..
T Consensus        98 ~~lT~~RTaA~s~laa~~La~~-~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~~  174 (313)
T 3hdj_A           98 GTLTRKRTAACTVLAAGALARP-RSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPARM  174 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEEE
T ss_pred             chhhhHHHHHHHHHHHHhhccC-CCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEEE
Confidence            3455556666666555655544 4569999997 999999988777643367999999985455555554321 123443


Q ss_pred             EecCCccccccCCCCEEEEcCC
Q 018314           84 YMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~ag  105 (358)
                         . ++++++++||+||.+-.
T Consensus       175 ---~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          175 ---A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             ---C-CHHHHHHHCSEEEECCC
T ss_pred             ---e-CHHHHHhhCCEEEEccC
Confidence               2 56789999999998753

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.68  E-value=0.024  Score=52.17  Aligned_cols=123  Identities=15%  Similarity=0.149  Sum_probs=74.5

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------HHHHHHhhcCCCCccEEEEe-cCCc---
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQ---   89 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---   89 (358)
                      +|.-+.+.+.|+||+|++|..++..|+..+.  +|++.|++..         .....++....  .++.... +-+|   
T Consensus         4 ~m~l~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~   79 (285)
T 3sc4_A            4 SMSLRGKTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDA   79 (285)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHH
Confidence            3444566899999999999999999999987  8999998752         12233333222  1333322 1122   


Q ss_pred             ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC---CCeEEEEeeCCCC
Q 018314           90 LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC---PNAIVNMISNPVN  149 (358)
Q Consensus        90 ~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~---p~a~iiv~tNP~d  149 (358)
                      ..+.+       ...|++|..||.....   ..+.   ...+..|+.-...+.+.+.++-   ..+.||+++....
T Consensus        80 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           80 VAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence            12222       3789999999974321   2232   3345577666666666555442   3567787776554

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.67  E-value=0.0063  Score=55.63  Aligned_cols=117  Identities=15%  Similarity=0.197  Sum_probs=66.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhc-CCCCccEEEEe-cCCc---cccccC-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGH-INTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~-~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.. .....++.... +-+|   +.++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999887  8999998752  222333311 01112333332 1122   223344     


Q ss_pred             --CCCEEEEcCCCCCCC---CC----CH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           96 --DSDVVIIPAGVPRKP---GM----TR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~----~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                        +.|++|..||.....   ..    +.   ...+..|+    .+.+.+.+.+++..  +.||+++...
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~~  150 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSIA  150 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEeccc
Confidence              899999999864321   11    22   22344554    34455555555443  6677776554

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.67  E-value=0.0062  Score=54.35  Aligned_cols=115  Identities=17%  Similarity=0.188  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCc---ccccc---CCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQ---LGQAL---EDSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d---~~~al---~~aD   98 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.++..  ....++.  .  ..+.. .+-+|   +.+++   ...|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~--~--~~~~~-~D~~~~~~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECP--G--IEPVC-VDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHST--T--CEEEE-CCTTCHHHHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC--C--CCEEE-EeCCCHHHHHHHHHHcCCCC
Confidence            456899999999999999999999887  89999986521  1111121  1  11111 11122   22233   3579


Q ss_pred             EEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           99 VVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        99 iVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +||..||.....   ..+   ....+..|+.-    .+.+.+.+.+....+.|++++...
T Consensus        79 ~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  138 (244)
T 3d3w_A           79 LLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQC  138 (244)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             EEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchh
Confidence            999999864321   122   23345556554    444455555444356677776543

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.67  E-value=0.014  Score=52.96  Aligned_cols=157  Identities=13%  Similarity=0.153  Sum_probs=85.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      ..++|.|+||+|++|..++..|+..+.  ++++.+.+.   ......++....  .++.... +-+|   ..+.+     
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~  100 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANG--GNGRLLSFDVANREQCREVLEHEIA  100 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999987  776655443   222333343322  1333322 1122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                        ...|++|..||.....   ..+.   ...+..|+.    +.+...+.+.+....+.||+++....           ..
T Consensus       101 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~-----------~~  169 (267)
T 4iiu_A          101 QHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSG-----------VM  169 (267)
T ss_dssp             HHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHH-----------HH
T ss_pred             HhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHh-----------cc
Confidence              3789999999875422   1222   334555544    44444555554556777777665321           12


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       170 ~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  205 (267)
T 4iiu_A          170 G-NRGQVNYSAAKAGIIGATKALAIELA--KRKITVNCI  205 (267)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C-CCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            2 33333444433223345566666653  344554443

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.67  E-value=0.002  Score=61.94  Aligned_cols=93  Identities=17%  Similarity=0.240  Sum_probs=58.1

Q ss_pred             hhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEE
Q 018314            6 LRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      |-..+|-+-.+.+.+++..+ ..++|+|||+ |.+|...+..+.....+.+|.+||++.  ++..+.++... ....+..
T Consensus       108 lT~~RTaa~s~laa~~la~~-~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~  184 (350)
T 1x7d_A          108 ATALRTAATSLMAAQALARP-NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR  184 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE
T ss_pred             EEeehhhHHHHHHHHHhccc-cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE
Confidence            34444554444444444332 4569999998 999999887665433356999999876  23333444321 1122333


Q ss_pred             EecCCccccccCCCCEEEEcC
Q 018314           84 YMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        84 ~~~~~d~~~al~~aDiVIi~a  104 (358)
                         .+++++++++||+||++-
T Consensus       185 ---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          185 ---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             ---CSSHHHHHTTCSEEEECC
T ss_pred             ---eCCHHHHHhcCCEEEEec
Confidence               246678899999999975

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.67  E-value=0.00091  Score=61.82  Aligned_cols=90  Identities=20%  Similarity=0.136  Sum_probs=58.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHH---HhhcCCCCccEEEEe-c---CCccccccCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAA---DVGHINTRSEVAGYM-G---NDQLGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~---dl~~~~~~~~v~~~~-~---~~d~~~al~~   96 (358)
                      ++||.|+||+|++|++++..|...+.  +|+.++++..    .....   .+...    .++... +   .+++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~----~v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKAS----GANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTT----TCEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhC----CCEEEEeccCCHHHHHHHHcC
Confidence            56899999999999999999998885  7888888641    11221   22221    122221 1   1235578899


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      +|+||.+++...             ....+.+++.+++.+
T Consensus        78 ~d~vi~~a~~~~-------------~~~~~~l~~aa~~~g  104 (308)
T 1qyc_A           78 VDVVISTVGSLQ-------------IESQVNIIKAIKEVG  104 (308)
T ss_dssp             CSEEEECCCGGG-------------SGGGHHHHHHHHHHC
T ss_pred             CCEEEECCcchh-------------hhhHHHHHHHHHhcC
Confidence            999999987532             122345666666665

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.66  E-value=0.0045  Score=56.07  Aligned_cols=160  Identities=13%  Similarity=0.100  Sum_probs=87.1

Q ss_pred             CCCCceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCc---ccccc----
Q 018314           25 SVPDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ---LGQAL----   94 (358)
Q Consensus        25 ~~~~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~~~al----   94 (358)
                      ..+.++|.|+||+  |++|..++..|+..+.  +|++.|.++ ......++........... .+-+|   ..+.+    
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~Dv~~~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFP-CDVADDAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEE-CCCCCHHHHHHHHHHHH
Confidence            3456789999998  8999999999999987  899999875 2222233322111111111 11122   22222    


Q ss_pred             ---CCCCEEEEcCCCCCC-----C--C-CCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHH
Q 018314           95 ---EDSDVVIIPAGVPRK-----P--G-MTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVF  159 (358)
Q Consensus        95 ---~~aDiVIi~ag~~~~-----~--g-~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~  159 (358)
                         ..-|++|..||....     +  . .+.   ...+..|+.-...+.+.+.++- +.+.||+++.....         
T Consensus        88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~---------  158 (271)
T 3ek2_A           88 THWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAE---------  158 (271)
T ss_dssp             HHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGT---------
T ss_pred             HHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccc---------
Confidence               367999999986432     1  1 222   3345666666666666655543 35667766643321         


Q ss_pred             HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        .+ .|..-.++.+......+-+.+++.++  +..|++..+
T Consensus       159 --~~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  195 (271)
T 3ek2_A          159 --RA-IPNYNTMGLAKAALEASVRYLAVSLG--AKGVRVNAI  195 (271)
T ss_dssp             --SB-CTTTTHHHHHHHHHHHHHHHHHHHHH--TTTCEEEEE
T ss_pred             --cC-CCCccchhHHHHHHHHHHHHHHHHHH--hcCcEEEEE
Confidence              11 23333334432223345566666653  445655544

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.66  E-value=0.0067  Score=61.36  Aligned_cols=134  Identities=16%  Similarity=0.174  Sum_probs=82.1

Q ss_pred             CceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      .+||.|||. |..|.+ +|..|...|.  +|...|.+........|....    +..+.+. +......++|+||.+.|+
T Consensus        19 ~~~i~~iGi-Gg~Gms~lA~~l~~~G~--~V~~sD~~~~~~~~~~L~~~g----i~~~~G~-~~~~~~~~~d~vV~Spgi   90 (524)
T 3hn7_A           19 GMHIHILGI-CGTFMGSLALLARALGH--TVTGSDANIYPPMSTQLEQAG----VTIEEGY-LIAHLQPAPDLVVVGNAM   90 (524)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEEESCCCTTHHHHHHHTT----CEEEESC-CGGGGCSCCSEEEECTTC
T ss_pred             CCEEEEEEe-cHhhHHHHHHHHHhCCC--EEEEECCCCCcHHHHHHHHCC----CEEECCC-CHHHcCCCCCEEEECCCc
Confidence            469999998 989975 6888888888  999999875222223344433    2233332 222323689999999888


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCCCceEe
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |...-+ ......++++++.+. +.+.++ .++..+|-+|=..+  .+|.+++++++..| +++.-++|
T Consensus        91 ~~~~p~-l~~a~~~gi~v~~~~-e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G-~~~~~~iG  156 (524)
T 3hn7_A           91 KRGMDV-IEYMLDTGLRYTSGP-QFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG-IDAGFLIG  156 (524)
T ss_dssp             CTTSHH-HHHHHHHTCCEEEHH-HHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT-CCCEEECS
T ss_pred             CCCCHH-HHHHHHCCCcEEEHH-HHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC-CCceEEEC
Confidence            753211 112234556665443 222222 33445666777766  77888888898888 65544444

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.66  E-value=0.004  Score=55.54  Aligned_cols=114  Identities=18%  Similarity=0.260  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      ++|.|+||+|++|..++..|+..+.  ++++. +.++.  .....++....  .++.... +-+|   +.++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999886  78874 65531  22222332211  1233321 1122   222332      


Q ss_pred             -CCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       +.|+||..||.....   ..+   ....+..|+.-    .+.+.+.+.+.. .+.+|++|..
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~~iv~~sS~  139 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASV  139 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCh
Confidence             789999999875421   122   23345566554    444444444333 4566766543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=96.65  E-value=0.01  Score=54.10  Aligned_cols=159  Identities=14%  Similarity=0.166  Sum_probs=87.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---ccccc--
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL--   94 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al--   94 (358)
                      |+-+.++|.|+||+|++|..++..|+..+.  +|++.+.+..   +....++....  .++.... +-+|   ..+.+  
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~  100 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQT  100 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHH
Confidence            334456899999999999999999999987  8999998551   22223333322  2333322 1122   12222  


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHH
Q 018314           95 -----EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVF  159 (358)
Q Consensus        95 -----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~  159 (358)
                           .+.|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++...           
T Consensus       101 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~-----------  168 (271)
T 4iin_A          101 IVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVASII-----------  168 (271)
T ss_dssp             HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH-----------
T ss_pred             HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEechh-----------
Confidence                 3789999999975422   1222   234455543    4455666666554 35666665421           


Q ss_pred             HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      -..+ .+..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       169 ~~~~-~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  207 (271)
T 4iin_A          169 GERG-NMGQTNYSASKGGMIAMSKSFAYEGA--LRNIRFNSV  207 (271)
T ss_dssp             HHHC-CTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             hcCC-CCCchHhHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence            1222 44444444433223345566666653  344555444

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.64  E-value=0.01  Score=53.75  Aligned_cols=156  Identities=17%  Similarity=0.152  Sum_probs=86.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++.+..  .++.... +-+|   ..+.+      
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~   86 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQ   86 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            446899999999999999999999887  899999876  233333443322  2333322 1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC--CCCHH---HHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 -EDSDVVIIPAGVPRKP--GMTRD---DLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~--g~~r~---~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                       ...|++|..||.....  ..+..   ..+..|+.    +.+.+.+.+.+. ..+.||+++.....           .+ 
T Consensus        87 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~~-  153 (256)
T 3gaf_A           87 FGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSMAGE-----------NT-  153 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGT-----------CC-
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHHc-----------CC-
Confidence             3789999999864321  23322   23445544    445555555543 35677777654321           11 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+......+-+.+++.++  +..|++..+
T Consensus       154 ~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (256)
T 3gaf_A          154 NVRMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAI  188 (256)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            22222333332223445566676653  445655444

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.64  E-value=0.006  Score=53.99  Aligned_cols=70  Identities=16%  Similarity=0.183  Sum_probs=45.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---ccc-ccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-ALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-al~~aDiVIi~a  104 (358)
                      |||.|+|+ |.+|+.++..|...++  +++++|.++..  ..++.+.. ...+.. .+.+|   +.+ .+++||+||++.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~--~~~l~~~~-~~~~i~-gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDREL--CEEFAKKL-KATIIH-GDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHH--HHHHHHHS-SSEEEE-SCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHH--HHHHHHHc-CCeEEE-cCCCCHHHHHhcCcccCCEEEEec
Confidence            68999998 9999999999998887  89999987522  22222111 011111 11122   223 378999999986


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      +
T Consensus        74 ~   74 (218)
T 3l4b_C           74 P   74 (218)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.63  E-value=0.0033  Score=56.64  Aligned_cols=112  Identities=21%  Similarity=0.223  Sum_probs=64.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEE-ecCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGY-MGNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~-~~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++   .    +... .+-+|   ..+++      
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~---~----~~~~~~D~~~~~~~~~~~~~~~~~   74 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAV---G----AHPVVMDVADPASVERGFAEALAH   74 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---T----CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHc---C----CEEEEecCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998652  1111111   1    1111 11122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP  147 (358)
                       ...|++|..||.....   ..+   -...+..|+.-...+.+.+.++   ...+.||+++..
T Consensus        75 ~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~  137 (245)
T 1uls_A           75 LGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR  137 (245)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccc
Confidence             2589999999975321   122   2334556655544444443332   234667766553

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.63  E-value=0.0035  Score=56.71  Aligned_cols=120  Identities=17%  Similarity=0.234  Sum_probs=68.2

Q ss_pred             ccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec-CCccc---c
Q 018314           17 GARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG-NDQLG---Q   92 (358)
Q Consensus        17 ~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~-~~d~~---~   92 (358)
                      +....-...-+.++|.|+||+|++|..++..|+..+.  +|++.|+++  ....++.      .+....+ ..+..   +
T Consensus         8 ~~~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~--~~~~~~~------~~~~~~D~~~~~~~~~~   77 (249)
T 1o5i_A            8 HHHHHMELGIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNE--ELLKRSG------HRYVVCDLRKDLDLLFE   77 (249)
T ss_dssp             --------CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCH--HHHHHTC------SEEEECCTTTCHHHHHH
T ss_pred             hhhhhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCH--HHHHhhC------CeEEEeeHHHHHHHHHH
Confidence            3333333444566899999999999999999999886  899999864  1122221      1221111 11222   2


Q ss_pred             ccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           93 ALEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .+.+.|+||..||.....   ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++..
T Consensus        78 ~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  141 (249)
T 1o5i_A           78 KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITSF  141 (249)
T ss_dssp             HSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcch
Confidence            334899999999865321   1222   23344453    34566667776654 4566766553

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.63  E-value=0.015  Score=52.61  Aligned_cols=116  Identities=12%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.++     
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAH   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhh
Confidence            456899999999999999999999987  899999876  333444444322  2333332 1122   222232     


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ..|++|..||.....   ..+.   ...+..|    ..+.+.+.+.+++.. .+.||+++..
T Consensus        82 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (252)
T 3h7a_A           82 APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGAT  143 (252)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEG
T ss_pred             CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence             669999999975421   2222   2334455    345566666666554 4666766543

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.63  E-value=0.0067  Score=54.34  Aligned_cols=75  Identities=21%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC-C--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA-N--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~-~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|++ .  ......++....  .++..+. +-.|   +.++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  89999987 4  222333343221  2333332 1122   223333     


Q ss_pred             --CCCEEEEcCCC
Q 018314           96 --DSDVVIIPAGV  106 (358)
Q Consensus        96 --~aDiVIi~ag~  106 (358)
                        +.|+||..||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.62  E-value=0.0021  Score=58.12  Aligned_cols=153  Identities=18%  Similarity=0.244  Sum_probs=85.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++.  .....++...     ..... +-+|   .++.+      
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~d~~~v~~~~~~~~~~   80 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDN-----GKGMALNVTNPESIEAVLKAITDE   80 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGG-----EEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccc-----ceEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998762  2222333221     11111 1112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++...           -..+
T Consensus        81 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~-----------~~~~  148 (248)
T 3op4_A           81 FGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVV-----------GTMG  148 (248)
T ss_dssp             HCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH-----------HHHC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchh-----------hcCC
Confidence             3789999999975422   1222   234455543    4555555555543 46667665421           1222


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+...-..+-+.+++.++  ++.|++..+
T Consensus       149 -~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  183 (248)
T 3op4_A          149 -NAGQANYAAAKAGVIGFTKSMAREVA--SRGVTVNTV  183 (248)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEE
Confidence             34433444433223445666777663  455665544

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.62  E-value=0.017  Score=52.79  Aligned_cols=157  Identities=19%  Similarity=0.201  Sum_probs=88.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC------------C---cHHHHHHhhcCCCCccEEEEe-cCCcc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA------------N---TPGVAADVGHINTRSEVAGYM-GNDQL   90 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~------------~---~~~~~~dl~~~~~~~~v~~~~-~~~d~   90 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|++            .   ......++....  .++.... +-+|.
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~   85 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDF   85 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCH
Confidence            345799999999999999999999987  89999973            1   122222333222  2333322 11221


Q ss_pred             ---ccc-------cCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314           91 ---GQA-------LEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus        91 ---~~a-------l~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                         .+.       +...|++|..||.....   ..+..   ..+..|    ..+.+.+.+.+.+..+.+.||+++.-...
T Consensus        86 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~  165 (277)
T 3tsc_A           86 DRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGM  165 (277)
T ss_dssp             HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred             HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhC
Confidence               112       23689999999975322   22322   234455    34567777777777667778877654321


Q ss_pred             chHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          151 TVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       151 ~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .           + .|..-.++.+......+-+.+++.++  +..|++..+
T Consensus       166 ~-----------~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  202 (277)
T 3tsc_A          166 K-----------M-QPFMIHYTASKHAVTGLARAFAAELG--KHSIRVNSV  202 (277)
T ss_dssp             S-----------C-CSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             C-----------C-CCCchhhHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            1           1 22222233332223445666777663  445655444

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=96.62  E-value=0.0064  Score=54.67  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=64.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH---HHHHhhcCCCCccEEEEecCCcccccc----CCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG---VAADVGHINTRSEVAGYMGNDQLGQAL----EDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~---~~~dl~~~~~~~~v~~~~~~~d~~~al----~~aDiVI  101 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|+++...   ...|+.+.            .+..+++    ...|++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~lv   67 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGLV   67 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEEE
Confidence            4799999999999999999999887  899999875211   11223221            1112223    4569999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHH----HHHHHHhhCCCeEEEEeeCCC
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~----i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..||..... ..-...+..|..-...    +.+.+.+.. .+.||+++...
T Consensus        68 ~~Ag~~~~~-~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  116 (257)
T 1fjh_A           68 LCAGLGPQT-KVLGNVVSVNYFGATELMDAFLPALKKGH-QPAAVVISSVA  116 (257)
T ss_dssp             ECCCCCTTC-SSHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGG
T ss_pred             ECCCCCCCc-ccHHHHHHHhhHHHHHHHHHHHHHHhhcC-CcEEEEECChh
Confidence            999975412 2244556666554444    444444332 35677776554

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.61  E-value=0.0073  Score=54.28  Aligned_cols=149  Identities=12%  Similarity=0.104  Sum_probs=81.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-e--cCCc--HHHHHHhhcCCCCccEEEEecCCccccc-------cCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-D--IANT--PGVAADVGHINTRSEVAGYMGNDQLGQA-------LED   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D--~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~a-------l~~   96 (358)
                      +++.|+||+|++|..++..|+..+.  +|++. |  +++.  .....++ .     ..+.. +.++..+.       +..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~-~-----~~~~~-~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN-P-----GTIAL-AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS-T-----TEEEC-CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh-C-----CCccc-CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999987  89998 5  7642  2222233 1     11111 12222222       347


Q ss_pred             CCEEEEcCCCCCC----C--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           97 SDVVIIPAGVPRK----P--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        97 aDiVIi~ag~~~~----~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      .|++|..||....    +  ..+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++.-....           +
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~~-----------~  140 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG-GASVIFITSSVGKK-----------P  140 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCGGGTS-----------C
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECChhhCC-----------C
Confidence            8999999986533    1  2222   23455554    34455555555443 56677776533211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+......+-+.++..++  ++.|++..+
T Consensus       141 -~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  175 (244)
T 1zmo_A          141 -LAYNPLYGPARAATVALVESAAKTLS--RDGILLYAI  175 (244)
T ss_dssp             -CTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             23333333332223345566666653  445555444

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=96.61  E-value=0.015  Score=53.82  Aligned_cols=157  Identities=11%  Similarity=0.081  Sum_probs=88.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHH-HhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAA-DVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~-dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+..  ..... .+....  .++.... +-+|   .++.+     
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  121 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVR  121 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998762  11222 222222  2333332 1122   11222     


Q ss_pred             --CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 --EDSDVVIIPAGVPRKP----GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                        ...|++|..||.....    ..+.   ...+..|+.-...+.+.+.++- ..+.||+++.-..           +.+ 
T Consensus       122 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~-----------~~~-  189 (291)
T 3ijr_A          122 QLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA-----------YEG-  189 (291)
T ss_dssp             HHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH-----------HHC-
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh-----------cCC-
Confidence              3789999999864321    1232   3456777777777777766553 3456666654321           122 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+......+-+.++..++  ++.|++..+
T Consensus       190 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  224 (291)
T 3ijr_A          190 NETLIDYSATKGAIVAFTRSLSQSLV--QKGIRVNGV  224 (291)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            33333333332223445566676653  345555444

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.61  E-value=0.014  Score=53.75  Aligned_cols=116  Identities=17%  Similarity=0.296  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++++.++  ......++....  .++.... +-+|   +.++       
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~  118 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTE  118 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998886  899988764  222233443322  2333322 1122   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.+.|+||..||.....   ..+   ..+.+..|+.-    .+.+.+.+.+.. .+.||+++..
T Consensus       119 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS~  181 (285)
T 2c07_A          119 HKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSI  181 (285)
T ss_dssp             CSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECCh
Confidence            24789999999875321   122   23345556544    555555555443 3566666553

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.60  E-value=0.018  Score=53.04  Aligned_cols=158  Identities=15%  Similarity=0.191  Sum_probs=88.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|++.  ......++....  .++.... +-+|   ..+++      
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  102 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLK  102 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999987  899999876  233344444322  2333322 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 -EDSDVVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 -~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                       ...|++|..||...  .+  ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++.-.....         .
T Consensus       103 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~~---------~  172 (283)
T 3v8b_A          103 FGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSINGTRT---------F  172 (283)
T ss_dssp             HSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTB---------C
T ss_pred             hCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcChhhccC---------C
Confidence             37899999999742  22  2232   23455554    44555566666554 566776665432110         0


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .|..-.++.+......+-+.+|..++  +..|++..+
T Consensus       173 ~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  208 (283)
T 3v8b_A          173 T-TPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAV  208 (283)
T ss_dssp             C-STTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             C-CCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEEEE
Confidence            1 12222233332223455677777763  556665544

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.60  E-value=0.017  Score=51.62  Aligned_cols=113  Identities=19%  Similarity=0.244  Sum_probs=67.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccE-EEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEV-AGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v-~~~~-~~~d---~~~al-----   94 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.     .++ .... +-+|   +.+++     
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~   82 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELG-----AAVAARIVADVTDAEAMTAAAAEAEA   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHG-----GGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----ccceeEEEEecCCHHHHHHHHHHHHh
Confidence            446899999999999999999999886  8999998752  22222331     122 2221 1122   22222     


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       .+.|+||..||.....   ..+.   ...+..|+.-    .+.+.+.+++.. .+.+|+++..
T Consensus        83 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS~  145 (254)
T 2wsb_A           83 VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGSM  145 (254)
T ss_dssp             HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEecc
Confidence             4789999999874321   1222   3345556544    555556665554 4566666554

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.60  E-value=0.001  Score=59.48  Aligned_cols=112  Identities=16%  Similarity=0.125  Sum_probs=65.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc---------CCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL---------EDSD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al---------~~aD   98 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++..... ..  .....++.   +.++..+.+         .+.|
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~~--~~~~~D~~---~~~~~~~~~~~~~~~~~~g~id   74 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-SN--ILVDGNKN---WTEQEQSILEQTASSLQGSQVD   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-EE--EECCTTSC---HHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-cc--EEEeCCCC---CHHHHHHHHHHHHHHhCCCCCC
Confidence            35799999999999999999999986  89999987621100 00  00000111   001111222         3789


Q ss_pred             EEEEcCCCCCC----CCCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           99 VVIIPAGVPRK----PGMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        99 iVIi~ag~~~~----~g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                      +||..||....    ...+   -...+..|+.-...+.+.+.++- ..+.||+++..
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            99999986431    1111   23445667666666666555543 24667766654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.60  E-value=0.017  Score=51.50  Aligned_cols=118  Identities=16%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEec-CCc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMG-NDQ---LGQ-------   92 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~-~~d---~~~-------   92 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++.... ....+..... ..|   ..+       
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  222233333222 1111211110 011   111       


Q ss_pred             ccCCCCEEEEcCCCCC--CC--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           93 ALEDSDVVIIPAGVPR--KP--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        93 al~~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .+...|++|..||...  .+  ..+.   ...+..|+.-    .+.+.+.+++. ..+.||+++..
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~  155 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS-EDASIAFTSSS  155 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSEEEEEECCG
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCeEEEEcch
Confidence            1237899999998632  21  1222   2334555444    44555544443 35667766543

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.59  E-value=0.035  Score=52.96  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=88.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------HHHHHHhhcCCCCccEEEEe-cCCc---cccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQ---LGQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a   93 (358)
                      +.+.|.|+||+|++|..++..|+..+.  +|++.|.++.         .....++....  .++.... +-.|   ..++
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~  119 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAA  119 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHH
Confidence            345799999999999999999999987  8999998752         12233343322  2333321 1122   1222


Q ss_pred             c-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHH----HHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           94 L-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKD----LCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        94 l-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~----i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      +       .+.|++|..||.....   ..+.   ...+..|+.-...    +.+.+++. ..+.||+++.+......   
T Consensus       120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-~~g~IV~iSS~~~~~~~---  195 (346)
T 3kvo_A          120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKS-KVAHILNISPPLNLNPV---  195 (346)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTC-SSCEEEEECCCCCCCGG---
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCCEEEEECCHHHcCCC---
Confidence            2       3899999999864321   2222   2345566554444    44444432 35678888877654321   


Q ss_pred             HHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          157 EVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                             +++..-.++.+...-..+-+.+|+.++   ..|++..+
T Consensus       196 -------~~~~~~~Y~aSKaal~~l~~~la~e~~---~gIrvn~v  230 (346)
T 3kvo_A          196 -------WFKQHCAYTIAKYGMSMYVLGMAEEFK---GEIAVNAL  230 (346)
T ss_dssp             -------GTSSSHHHHHHHHHHHHHHHHHHHHTT---TTCEEEEE
T ss_pred             -------CCCCchHHHHHHHHHHHHHHHHHHHhc---CCcEEEEE
Confidence                   012222233332223456677788876   45665554

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=96.59  E-value=0.0012  Score=57.29  Aligned_cols=103  Identities=14%  Similarity=0.181  Sum_probs=63.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC---CCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE---DSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~---~aDiVIi~a  104 (358)
                      +|||.|+||+|++|+.++..|+ .+.  +|++.|++.. ....|+.+            .+++.++++   ..|+||.+|
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999998 776  8999998642 00011111            011222333   479999999


Q ss_pred             CCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeC
Q 018314          105 GVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCP-NAIVNMISN  146 (358)
Q Consensus       105 g~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tN  146 (358)
                      |.....   ..+.   ...+..|+.-...+.+.+.++-. .+.+++++.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            864321   1222   23456677766677766665532 256665554

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=96.59  E-value=0.0011  Score=60.10  Aligned_cols=101  Identities=19%  Similarity=0.208  Sum_probs=67.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCccccccCC--CCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQLGQALED--SDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~~~al~~--aDiVIi~ag  105 (358)
                      |||.|+||+|++|++++..|.. +.  +|++++.++...     .      .+..-. +.+++.+++++  .|+||++||
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~------~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G------GYKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T------CEECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C------CceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999884 53  899999865210     0      121100 11223445665  999999998


Q ss_pred             CCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          106 VPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       106 ~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .....  ..+..+.+..|+.....+.+.+.+..  +.+|.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVID--SYIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEe
Confidence            64321  12345667889988999999888764  3555554

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.59  E-value=0.0012  Score=59.37  Aligned_cols=113  Identities=13%  Similarity=0.113  Sum_probs=65.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc---------CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL---------EDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al---------~~a   97 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++..... .. + ....++.   +.++..+.+         .+.
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~D~~---~~~~v~~~~~~~~~~~~~g~i   77 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-V-IVKMTDS---FTEQADQVTAEVGKLLGDQKV   77 (241)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-E-ECCCCSC---HHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-E-EEEcCCC---CHHHHHHHHHHHHHHhCCCCC
Confidence            346899999999999999999999886  89999987521100 00 0 0000111   001111222         378


Q ss_pred             CEEEEcCCCCCC----CCCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           98 DVVIIPAGVPRK----PGMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        98 DiVIi~ag~~~~----~g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                      |++|..||....    ...+   ....+..|+.-...+.+.+.++- ..+.||+++.-
T Consensus        78 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~  135 (241)
T 1dhr_A           78 DAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  135 (241)
T ss_dssp             EEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCH
Confidence            999999986431    1111   23345566665555555554432 24667766653

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.58  E-value=0.019  Score=52.54  Aligned_cols=156  Identities=14%  Similarity=0.165  Sum_probs=84.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------------cHHHHHHhhcCCCCccEEEEe-cCCc--
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------------TPGVAADVGHINTRSEVAGYM-GNDQ--   89 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------------~~~~~~dl~~~~~~~~v~~~~-~~~d--   89 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++              .......+....  .++.... +-+|  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   84 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA--DIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRA   84 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345899999999999999999999987  899999862              111122222222  2333322 1122  


Q ss_pred             -ccccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           90 -LGQAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        90 -~~~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                       ..+.+       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++..... 
T Consensus        85 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~~-  162 (281)
T 3s55_A           85 ALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN-YGRIVTVSSMLGH-  162 (281)
T ss_dssp             HHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGG-
T ss_pred             HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhhc-
Confidence             22222       3789999999974321   2232   234455544    4455555565544 4667777653321 


Q ss_pred             hHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          152 VPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       152 t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                                .+ .+..-.++.+......+-+.+|+.++  +..|++..+
T Consensus       163 ----------~~-~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  199 (281)
T 3s55_A          163 ----------SA-NFAQASYVSSKWGVIGLTKCAAHDLV--GYGITVNAV  199 (281)
T ss_dssp             ----------SC-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             ----------CC-CCCCchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence                      11 22222233332223345666777653  455655444

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.58  E-value=0.0089  Score=54.99  Aligned_cols=155  Identities=13%  Similarity=0.095  Sum_probs=85.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---cccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al-------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|.++  ......++....  .++.... +-+|.   .+++       
T Consensus        24 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           24 PQTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERF   99 (279)
T ss_dssp             -CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  899999876  233344454332  2333332 11221   1222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHH------HhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAI------AKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i------~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      ...|++|..||.....   ..+.   ...+..|+.-...+.+.+      .+. ..+.||+++......           
T Consensus       100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~~g~iV~isS~~~~~-----------  167 (279)
T 3sju_A          100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREA-GWGRIVNIASTGGKQ-----------  167 (279)
T ss_dssp             CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHH-TCEEEEEECCGGGTS-----------
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhc-CCcEEEEECChhhcc-----------
Confidence            3679999999874321   1222   234556655544444443      333 346677776543211           


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       168 ~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  203 (279)
T 3sju_A          168 G-VMYAAPYTASKHGVVGFTKSVGFELA--KTGITVNAV  203 (279)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             C-CCCChhHHHHHHHHHHHHHHHHHHHH--hhCcEEEEE
Confidence            1 22222233332223345566676653  455655444

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.58  E-value=0.0053  Score=56.01  Aligned_cols=155  Identities=13%  Similarity=0.083  Sum_probs=83.0

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCc---ccc-------
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQ---LGQ-------   92 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d---~~~-------   92 (358)
                      |.-+.++|.|+||+|++|.+++..|+..+.  +|++.|.++... ...+.+..    +... .+-+|   ..+       
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~----~~~~~~Dv~~~~~v~~~~~~~~~   95 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGH--RVIISYRTEHAS-VTELRQAG----AVALYGDFSCETGIMAFIDLLKT   95 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHH-HHHHHHHT----CEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHH-HHHHHhcC----CeEEECCCCCHHHHHHHHHHHHH
Confidence            334456799999999999999999999986  899999876321 11222111    1111 11111   111       


Q ss_pred             ccCCCCEEEEcCCCCCCC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           93 ALEDSDVVIIPAGVPRKP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      .+...|++|..||.....  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.....           .+
T Consensus        96 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~-----------~~  163 (260)
T 3gem_A           96 QTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE-VADIVHISDDVTR-----------KG  163 (260)
T ss_dssp             HCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS-SCEEEEECCGGGG-----------TC
T ss_pred             hcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcEEEEECChhhc-----------CC
Confidence            224789999999965322  2222   234455544    4455555555433 4567766643311           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.++..++  + .|++..+
T Consensus       164 -~~~~~~Y~asKaa~~~l~~~la~e~~--~-~Irvn~v  197 (260)
T 3gem_A          164 -SSKHIAYCATKAGLESLTLSFAARFA--P-LVKVNGI  197 (260)
T ss_dssp             -CSSCHHHHHHHHHHHHHHHHHHHHHT--T-TCEEEEE
T ss_pred             -CCCcHhHHHHHHHHHHHHHHHHHHHC--C-CCEEEEE
Confidence             33333333333223456677777765  2 3666555

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.57  E-value=0.0083  Score=55.60  Aligned_cols=152  Identities=15%  Similarity=0.152  Sum_probs=83.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      .+++||+|+|++|.||+.++..+...+-. +|+ .+|.++......|+....  ....+..+   +|+.+.++++|+||.
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~-elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~---~dl~~~l~~~DvVID   78 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQ---SSLDAVKDDFDVFID   78 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEE---SCSTTTTTSCSEEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecCchhhhhhhHHHHcCCCcCCceec---CCHHHHhcCCCEEEE
Confidence            45689999998899999998887765422 665 778754211112222211  01123322   456677889999995


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-ccc---H
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD---V  178 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~ld---s  178 (358)
                      ... |               ....+++....+.+.+   +++..| .....-..++.+.+...  ..++... .+.   -
T Consensus        79 ft~-p---------------~~~~~~~~~a~~~G~~---vVigTt-G~~~e~~~~L~~~a~~~--~vv~a~N~siGvn~~  136 (273)
T 1dih_A           79 FTR-P---------------EGTLNHLAFCRQHGKG---MVIGTT-GFDEAGKQAIRDAAADI--AIVFAANFSVGVNVM  136 (273)
T ss_dssp             CSC-H---------------HHHHHHHHHHHHTTCE---EEECCC-CCCHHHHHHHHHHTTTS--CEEECSCCCHHHHHH
T ss_pred             cCC-h---------------HHHHHHHHHHHhCCCC---EEEECC-CCCHHHHHHHHHhcCCC--CEEEEecCcHHHHHH
Confidence            431 1               1334555555555433   445555 33222222333333211  1333321 111   2


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEEeecCC
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVVGGHAG  206 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~G~hg~  206 (358)
                      .++...+|+.++   .+.++-++--|+.
T Consensus       137 ~~l~~~aa~~~~---~~~dieiiE~Hh~  161 (273)
T 1dih_A          137 LKLLEKAAKVMG---DYTDIEIIEAHHR  161 (273)
T ss_dssp             HHHHHHHHHHHT---TTSEEEEEEEECT
T ss_pred             HHHHHHHHHhcC---CCCCEEEEEeecC
Confidence            456677788886   4678888988987

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.57  E-value=0.014  Score=53.85  Aligned_cols=120  Identities=12%  Similarity=0.095  Sum_probs=70.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC---CCccEEEEe-cCCc---cccccC--
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYM-GNDQ---LGQALE--   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~-~~~d---~~~al~--   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++.  ......++....   ...++..+. +-+|   +.+.++  
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~   94 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   94 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence            346899999999999999999999887  899999875  222333443210   112344332 1122   222232  


Q ss_pred             -----CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEeeCCC
Q 018314           96 -----DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY---CPNAIVNMISNPV  148 (358)
Q Consensus        96 -----~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~---~p~a~iiv~tNP~  148 (358)
                           ..|+||.+||.....   ..+.   ...+..|+.-...+.+.+.+.   ...+.+|+++...
T Consensus        95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~  161 (303)
T 1yxm_A           95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT  161 (303)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC
T ss_pred             HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec
Confidence                 589999999854321   1222   234566765555555554331   1246677676544

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.57  E-value=0.011  Score=53.41  Aligned_cols=115  Identities=13%  Similarity=0.195  Sum_probs=68.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH----HHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|++...    ....++....  .++.... +-+|   ..++++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999886  89999986532    1222333222  2333322 1122   222232     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        ..|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++....+.||+++..
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  142 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASI  142 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcc
Confidence              789999999864321   1222   234455544    455666666655543667766654

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.56  E-value=0.02  Score=52.05  Aligned_cols=163  Identities=15%  Similarity=0.189  Sum_probs=83.3

Q ss_pred             ccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cc
Q 018314           19 RGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LG   91 (358)
Q Consensus        19 ~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~   91 (358)
                      .++.+|. +.+.+.|+||+|++|..++..|+..+.  .|++.|.+..   .....++....  .++.... +-+|   ..
T Consensus        17 ~~p~~~~-~~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~   91 (269)
T 3gk3_A           17 QGPGSMQ-AKRVAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAG--RDFKAYAVDVADFESCE   91 (269)
T ss_dssp             --------CCCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTT--CCCEEEECCTTCHHHHH
T ss_pred             CCchhhh-cCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CceEEEEecCCCHHHHH
Confidence            3444443 345688889999999999999999987  8999996552   22222233222  2233322 1122   11


Q ss_pred             ccc-------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHH
Q 018314           92 QAL-------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPI  154 (358)
Q Consensus        92 ~al-------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~  154 (358)
                      +.+       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++...      
T Consensus        92 ~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~g~iv~isS~~------  164 (269)
T 3gk3_A           92 RCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR-FGRIVNIGSVN------  164 (269)
T ss_dssp             HHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH------
T ss_pred             HHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEeCChh------
Confidence            222       3789999999865321   2232   233455544    3455555555443 46677666422      


Q ss_pred             HHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          155 AAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       155 ~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                           -..+ .+..-.++.+......+-+.+++.+.  +..|++..+
T Consensus       165 -----~~~~-~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  203 (269)
T 3gk3_A          165 -----GSRG-AFGQANYASAKAGIHGFTKTLALETA--KRGITVNTV  203 (269)
T ss_dssp             -----HHHC-CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----hccC-CCCcchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence                 1122 33333344432223345566666653  344554443

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.56  E-value=0.022  Score=52.07  Aligned_cols=161  Identities=20%  Similarity=0.269  Sum_probs=87.1

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL   94 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al   94 (358)
                      ..++-+.+.+.|+||+|++|..++..|+..+.  +|++.|.+.   ......++....  .++.... +-+|   ..+.+
T Consensus        22 ~~~~l~~k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~   97 (269)
T 4dmm_A           22 TALPLTDRIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALF   97 (269)
T ss_dssp             --CTTTTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHH
Confidence            33444556789999999999999999999987  888988754   222233343322  1233322 1122   22222


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHH
Q 018314           95 -------EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAE  157 (358)
Q Consensus        95 -------~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~  157 (358)
                             ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.-.         
T Consensus        98 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~---------  167 (269)
T 4dmm_A           98 AAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIASVV---------  167 (269)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCHH---------
T ss_pred             HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECchh---------
Confidence                   2789999999975322   1222   233445543    4555556565544 45666665321         


Q ss_pred             HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          158 VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       158 ~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        -..+ .+..-.++.+...-..+-+.+|+.++  ++.|++..+
T Consensus       168 --~~~~-~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  206 (269)
T 4dmm_A          168 --GEMG-NPGQANYSAAKAGVIGLTKTVAKELA--SRGITVNAV  206 (269)
T ss_dssp             --HHHC-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --hcCC-CCCchhHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence              1122 33333344433223445666676653  445655444

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.56  E-value=0.046  Score=49.89  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=71.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccc--cCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQA--LEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a--l~~aDiVI  101 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|++..+.....+.....  +...+. +-+|   .++.  ...-|++|
T Consensus         9 GKvalVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~--~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            9 GRKALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGG--NASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCC--cEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            34677779999999999999999997  8999998764333333333221  222221 1112   1111  23479999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          102 IPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       102 i~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ..||.....   ..+..   ..+.-|    .-..+..++.|.+....+.||+++.-
T Consensus        85 NNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~  140 (247)
T 4hp8_A           85 NNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASL  140 (247)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             ECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEech
Confidence            999975422   23322   334455    34557778888777767888887653

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=96.56  E-value=0.0014  Score=60.81  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=87.9

Q ss_pred             eEEEEcCCCChHHHHHHHHHhC--CCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccC--CCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLN--PLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALE--DSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~--~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~--~aDiVIi~a  104 (358)
                      ||.|+||+|++|++++..|...  +.  +|+..|.......     ..   .-+..- .+.+++.++++  +.|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~---~~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GI---KFITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TC---CEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cc---eEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            6899999999999999988876  54  7899987642110     00   011110 00122334566  899999999


Q ss_pred             CCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH-HHHHHhCCCCCCceEeeccccHHHHH
Q 018314          105 GVPRKP-GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA-EVFKKAGTYNEKKLFGVTTLDVVRAK  182 (358)
Q Consensus       105 g~~~~~-g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~-~~~~~sg~~~~~kviG~t~lds~R~~  182 (358)
                      +..... .....+.+..|+.....+.+.+.+.... .+|.+|... +...... ..........+...+|.+.....++-
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~-~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~  148 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIG-VFGPETPKNKVPSITITRPRTMFGVTKIAAELLG  148 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGG-GCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHH-HhCCCCCCCCccccccCCCCchHHHHHHHHHHHH
Confidence            853211 1234566788999999999998876544 344443221 0000000 00000000123334444444344454


Q ss_pred             HHHHHHcCCCCCCCc-eEEEee
Q 018314          183 TFYAGKANVNVAEVN-VPVVGG  203 (358)
Q Consensus       183 ~~la~~l~v~~~~v~-~~v~G~  203 (358)
                      ..+++..|++..-++ ..++|.
T Consensus       149 ~~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          149 QYYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHHhcCCeEEEEecCcEecc
Confidence            555566676655555 456664

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=96.55  E-value=0.011  Score=55.60  Aligned_cols=167  Identities=18%  Similarity=0.225  Sum_probs=85.6

Q ss_pred             ccccccCCC-CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC----------C--cHHHHHHhhcCCCCccEEE
Q 018314           17 GARGYSSES-VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----------N--TPGVAADVGHINTRSEVAG   83 (358)
Q Consensus        17 ~~~~~~~~~-~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~----------~--~~~~~~dl~~~~~~~~v~~   83 (358)
                      +.+++.+|. -+.+.+.|+||+|++|..++..|+..+.  +|++.|.+          .  ......++....  .++..
T Consensus        15 ~~~~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~   90 (322)
T 3qlj_A           15 QTQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVA   90 (322)
T ss_dssp             -------CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEE
T ss_pred             eccCCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEE
Confidence            444455554 2345688889999999999999999987  89999976          2  233333444322  23333


Q ss_pred             Ee-cCCc---cccccC-------CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhC-----C
Q 018314           84 YM-GNDQ---LGQALE-------DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYC-----P  137 (358)
Q Consensus        84 ~~-~~~d---~~~al~-------~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~-----p  137 (358)
                      .. +-+|   ..+.++       ..|++|..||.....   ..+.   ...+..|+.    +++...+.+.+..     +
T Consensus        91 ~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~  170 (322)
T 3qlj_A           91 DGSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAV  170 (322)
T ss_dssp             ECCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             EECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCC
Confidence            22 1122   112222       789999999975322   1222   234556654    3444444444322     1


Q ss_pred             CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       138 ~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+.||+++.-..           ..+ .+..-.++.+...-..+-+.+|..++  +..|++..+
T Consensus       171 ~g~IV~isS~~~-----------~~~-~~~~~~Y~asKaal~~l~~~la~e~~--~~gI~vn~v  220 (322)
T 3qlj_A          171 DGRIINTSSGAG-----------LQG-SVGQGNYSAAKAGIATLTLVGAAEMG--RYGVTVNAI  220 (322)
T ss_dssp             CEEEEEECCHHH-----------HHC-BTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CcEEEEEcCHHH-----------ccC-CCCCccHHHHHHHHHHHHHHHHHHhc--ccCcEEEEe
Confidence            367776654221           112 23333333332223345566666653  445555444

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.55  E-value=0.01  Score=59.51  Aligned_cols=136  Identities=14%  Similarity=0.226  Sum_probs=79.2

Q ss_pred             CCCCCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ++.+.+||.|||. |..|.+ +|..|...|.  +|..+|..+.. ....|....    ++.+.+ .+ .+.+.++|+||.
T Consensus        18 ~~~~~~~v~viGi-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~g-~~-~~~~~~~d~vV~   87 (494)
T 4hv4_A           18 EMRRVRHIHFVGI-GGAGMGGIAEVLANEGY--QISGSDLAPNS-VTQHLTALG----AQIYFH-HR-PENVLDASVVVV   87 (494)
T ss_dssp             ----CCEEEEETT-TSTTHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT----CEEESS-CC-GGGGTTCSEEEE
T ss_pred             hhccCCEEEEEEE-cHhhHHHHHHHHHhCCC--eEEEEECCCCH-HHHHHHHCC----CEEECC-CC-HHHcCCCCEEEE
Confidence            3455679999998 999985 8999999998  99999987532 222344332    333333 23 356889999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +.|+|...-+ ......++++++.++ +.+.+......+|-+|=..+  .+|.+++++++..| +++--++|
T Consensus        88 Spgi~~~~p~-~~~a~~~gi~v~~~~-e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g-~~~~~~~g  156 (494)
T 4hv4_A           88 STAISADNPE-IVAAREARIPVIRRA-EMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG-LDPTFVNG  156 (494)
T ss_dssp             CTTSCTTCHH-HHHHHHTTCCEEEHH-HHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT-CCCEEEEE
T ss_pred             CCCCCCCCHH-HHHHHHCCCCEEcHH-HHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC-CCCEEEEC
Confidence            9888752211 111122334443221 11111222234566766665  77888888888887 54433333

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.038  Score=50.76  Aligned_cols=117  Identities=15%  Similarity=0.224  Sum_probs=69.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (358)
                      ..+++.|+||+|++|..++..|+..+.  +|++.|.+.   ......++.... ..++.... +-+|   ..+.      
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999987  899999854   223333343321 12333332 1122   1122      


Q ss_pred             -cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 -LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       +...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++..
T Consensus       101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  164 (281)
T 3v2h_A          101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIASA  164 (281)
T ss_dssp             HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECCc
Confidence             23789999999974322   1232   233455543    4555555566554 4566766553

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.54  E-value=0.0096  Score=53.61  Aligned_cols=118  Identities=15%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   93 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++.  ......++.... ..++.... +-.|   +.++       
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999886  899999854  222223332110 11233322 1122   1122       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +...|+||..||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.+|++|..
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  153 (265)
T 1h5q_A           90 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM  153 (265)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCc
Confidence            23489999999874321   1222   233555654    444445555544444666766543

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.53  E-value=0.01  Score=53.73  Aligned_cols=111  Identities=17%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH-HHHhhcCCCCccEEEEecCCc---cccc-------cCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-AADVGHINTRSEVAGYMGNDQ---LGQA-------LED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~   96 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++.... ..++.. .   -+.  .+-+|   ..++       +..
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~---~~~--~D~~~~~~~~~~~~~~~~~~g~   77 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG-A---FFQ--VDLEDERERVRFVEEAAYALGR   77 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC-E---EEE--CCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC-C---EEE--eeCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999986  8999998763311 222220 0   011  11112   1222       236


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .|++|..||.....   ..+.   ...+..|+.-.    +.+.+.+++. ..+.||+++.-
T Consensus        78 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~  137 (256)
T 2d1y_A           78 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVASV  137 (256)
T ss_dssp             CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCG
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEccc
Confidence            89999999864321   2222   33455665544    4444444443 34667766553

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.53  E-value=0.0085  Score=54.68  Aligned_cols=118  Identities=15%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CC--cHHHHHHhhcCCCCccEEEEe-cCCcc-------cccc--
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-AN--TPGVAADVGHINTRSEVAGYM-GNDQL-------GQAL--   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~-------~~al--   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+ ++  ......++.... ..++.... +-+|.       .+.+  
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~   87 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAAR-AGSAVLCKGDLSLSSSLLDCCEDIIDC   87 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHS-TTCEEEEECCCSSSTTHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHHhc-CCceEEEeccCCCccccHHHHHHHHHH
Confidence            35799999999999999999999987  8999998 54  222233332210 11233221 11221       1222  


Q ss_pred             -----CCCCEEEEcCCCCCCC---CCC--------------HHHHHHHHHHHHHHHHHHHHhhC--CC------eEEEEe
Q 018314           95 -----EDSDVVIIPAGVPRKP---GMT--------------RDDLFNINAGIVKDLCSAIAKYC--PN------AIVNMI  144 (358)
Q Consensus        95 -----~~aDiVIi~ag~~~~~---g~~--------------r~~~~~~N~~i~~~i~~~i~~~~--p~------a~iiv~  144 (358)
                           ...|++|..||.....   ..+              ....+..|+.-...+.+.+.++-  ..      +.||++
T Consensus        88 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~i  167 (276)
T 1mxh_A           88 SFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNL  167 (276)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEE
T ss_pred             HHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEE
Confidence                 2789999999864321   111              12345666665555555554432  22      677777


Q ss_pred             eCCC
Q 018314          145 SNPV  148 (358)
Q Consensus       145 tNP~  148 (358)
                      +...
T Consensus       168 sS~~  171 (276)
T 1mxh_A          168 CDAM  171 (276)
T ss_dssp             CCGG
T ss_pred             Cchh
Confidence            6543

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.52  E-value=0.0041  Score=55.82  Aligned_cols=112  Identities=14%  Similarity=0.163  Sum_probs=65.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      ++++.|+||+|++|..++..|+..+.  +|++.|+++.  +....++..     ++.... +-+|   .++.+       
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  8999998762  222333321     222221 1112   12222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ...|++|..||.....   ..+.   ...+..|+.-.    +.+.+.+.+.  .+.||+++...
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~~~iv~isS~~  137 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGER--GGVLANVLSSA  137 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECCEE
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEEeCHH
Confidence            3679999999974321   2232   33455665555    4444444433  34666665543

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.52  E-value=0.032  Score=51.06  Aligned_cols=155  Identities=15%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|+++|+++  .+..+.++.....  ++..+. +-+|.          .+.+
T Consensus         7 gKvalVTGas~GIG~aiA~~la~~Ga--~Vv~~~~~~~~~~~~~~~i~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            7 NKVVIVTGAGSGIGRAIAKKFALNDS--IVVAVELLEDRLNQIVQELRGMGK--EVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34788889999999999999999987  899999986  3344455544321  222221 11121          2335


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 EDSDVVIIPAGVPR--KP--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..-|++|..||...  .+  ..+..   ..+..|    .-..+...+.|.+.. .+.||+++.-....           |
T Consensus        83 G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IVnisS~~g~~-----------~  150 (254)
T 4fn4_A           83 SRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG-KGVIVNTASIAGIR-----------G  150 (254)
T ss_dssp             SCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTC-----------S
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEechhhcC-----------C
Confidence            67899999999632  32  23322   234444    455678888887765 57777776433211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       151 -~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V  185 (254)
T 4fn4_A          151 -GFAGAPYTVAKHGLIGLTRSIAAHYG--DQGIRAVAV  185 (254)
T ss_dssp             -SSSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCChHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence             11111122221112345667777763  666766555

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.51  E-value=0.026  Score=51.27  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=68.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+.  ......++....  .++.... +-+|   ..+.+      
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   85 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKA   85 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  233333443322  1233322 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCC--CC--CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPR--KP--GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|++|..||...  .+  ..+..   ..+..|+    .+.+.+.+.+.+..  +.||+++.-
T Consensus        86 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  148 (264)
T 3ucx_A           86 YGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNSM  148 (264)
T ss_dssp             TSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECcc
Confidence             37899999998632  22  22322   2344454    34455555565543  667766654

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=96.51  E-value=0.0081  Score=57.53  Aligned_cols=93  Identities=20%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .+-..++|+|||. |.+|+.+|..+...+.  +|..||+....       . .   ....   ..++.+.+++||+|++.
T Consensus       167 ~~l~gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~-------~-~---~~~~---~~sl~ell~~aDvVil~  229 (340)
T 4dgs_A          167 HSPKGKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLS-------G-V---DWIA---HQSPVDLARDSDVLAVC  229 (340)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCT-------T-S---CCEE---CSSHHHHHHTCSEEEEC
T ss_pred             ccccCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCccc-------c-c---Ccee---cCCHHHHHhcCCEEEEe
Confidence            4456789999997 9999999999987776  89999987532       0 0   1121   24567889999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .  |..+         .+..++.  .+.+....|++++|+++.
T Consensus       230 v--P~t~---------~t~~li~--~~~l~~mk~gailIN~aR  259 (340)
T 4dgs_A          230 V--AASA---------ATQNIVD--ASLLQALGPEGIVVNVAR  259 (340)
T ss_dssp             C---------------------C--HHHHHHTTTTCEEEECSC
T ss_pred             C--CCCH---------HHHHHhh--HHHHhcCCCCCEEEECCC
Confidence            5  2111         1111110  123444567888888754

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.51  E-value=0.06  Score=48.84  Aligned_cols=118  Identities=12%  Similarity=0.088  Sum_probs=68.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (358)
                      +.+.+.|+||+|++|..++..|+..+.  .|++.|.++  ......++.......++.... +-+|.   .+.       
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  233333443311111233322 11221   111       


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHH----HHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDL----CSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i----~~~i~~~~p~a~iiv~tNP  147 (358)
                      +..-|++|..||.....   ..+.   ...+..|+.-...+    .+.+.+. ..+.||+++..
T Consensus        85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~  147 (265)
T 3lf2_A           85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESR-ADAAIVCVNSL  147 (265)
T ss_dssp             HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-TTEEEEEEEEG
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCeEEEEECCc
Confidence            23679999999974321   2232   23455665544444    4444432 35667766543

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.50  E-value=0.02  Score=52.62  Aligned_cols=116  Identities=15%  Similarity=0.140  Sum_probs=70.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.+      
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999987  899999976  334444444322  1233322 1112   12222      


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.....   ..+..   ..+..|+    .+.+.+.+.+.+.. .+.||+++..
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~  169 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK-WGRVVSIGSI  169 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCH
Confidence            2689999999864322   22322   2344553    45566666666543 5667766553

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=96.50  E-value=0.0026  Score=60.44  Aligned_cols=91  Identities=13%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (358)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~   82 (358)
                      .|...+|-+-.+.+.+++..+ ..++|+|||+ |.+|...+..|.....+.+|.++|++.  ++..+.++....  ..+.
T Consensus       103 ~lt~~RTaa~s~laa~~la~~-~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~--~~~~  178 (322)
T 1omo_A          103 YTTSLRTGAAGGIAAKYLARK-NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS  178 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE
T ss_pred             hHHHHHHHHHHHHHHHhccCC-CCCEEEEEcC-cHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcC--ceEE
Confidence            344455555444444444433 4569999998 999999988777643467999999876  233344443211  1233


Q ss_pred             EEecCCccccccCCCCEEEEcC
Q 018314           83 GYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        83 ~~~~~~d~~~al~~aDiVIi~a  104 (358)
                       +   +++++++ ++|+|+++-
T Consensus       179 -~---~~~~e~v-~aDvVi~aT  195 (322)
T 1omo_A          179 -V---QPAEEAS-RCDVLVTTT  195 (322)
T ss_dssp             -E---CCHHHHT-SSSEEEECC
T ss_pred             -E---CCHHHHh-CCCEEEEee
Confidence             3   3567888 999999975

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.49  E-value=0.0031  Score=57.04  Aligned_cols=151  Identities=13%  Similarity=0.165  Sum_probs=83.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccc-------cC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------LE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l~   95 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..     ++.... +-+|   ..+.       +.
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3688999999999999999999986  8999998752  222222321     222221 1112   1122       23


Q ss_pred             CCCEEEEcCCCCC--CC--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           96 DSDVVIIPAGVPR--KP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..|++|..||...  .+  ..+.   ...+..|+    .+.+.+.+.+.+.. .+.||+++.....           .+ 
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~-----------~~-  140 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGSTAGS-----------WP-  140 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------SC-
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEccchhc-----------cC-
Confidence            7899999999752  21  2222   23455553    44566666665544 4566766653321           11 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+......+-+.++..+  .+..|++..+
T Consensus       141 ~~~~~~Y~asKaa~~~~~~~la~e~--~~~gi~v~~v  175 (248)
T 3asu_A          141 YAGGNVYGATKAFVRQFSLNLRTDL--HGTAVRVTDI  175 (248)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHT--TTSCCEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHh--hhcCcEEEEE
Confidence            2222233333222334556666665  3556766555

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.49  E-value=0.028  Score=52.02  Aligned_cols=159  Identities=14%  Similarity=0.172  Sum_probs=86.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQ-------A   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a   93 (358)
                      .+++.|+||+|++|..++..|+..+. ...|++.|.+.  ......++.......++.... +-+|   ..+       .
T Consensus        33 ~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  112 (287)
T 3rku_A           33 KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQE  112 (287)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGG
T ss_pred             CCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence            45899999999999999999987663 23899999875  233333343221112333322 1122   222       2


Q ss_pred             cCCCCEEEEcCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           94 LEDSDVVIIPAGVPRKP----GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      +...|++|..||.....    ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++.....           .
T Consensus       113 ~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~-----------~  180 (287)
T 3rku_A          113 FKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGSIAGR-----------D  180 (287)
T ss_dssp             GCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------S
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECChhhc-----------C
Confidence            23689999999964311    2232   23445554    44555666666554 4566666553321           1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       181 ~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          181 A-YPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             C-CCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            1 23333333332223456677777763  556665544

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.48  E-value=0.031  Score=50.20  Aligned_cols=114  Identities=18%  Similarity=0.249  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------cC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYM-GNDQL---GQA-------LE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------l~   95 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++ .... .++....  .++.... +-+|.   .++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAE-AAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHH-HHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHH-HHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45899999999999999999999987  899999876 3222 1333222  2333322 11221   122       34


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ..|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+++.. .+.||+++..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  142 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTST  142 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcch
Confidence            789999999864321   1222   2345556544    566666676654 4566766653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.47  E-value=0.012  Score=54.57  Aligned_cols=157  Identities=10%  Similarity=0.078  Sum_probs=86.2

Q ss_pred             CCceEEEEcCCCC--hHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---cccc------
Q 018314           27 PDRKVAVLGAAGG--IGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~--vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   93 (358)
                      +.+++.|+||+|+  +|..++..|+..+.  +|++.|.++. .....++.....  ++.... +-+|   ..+.      
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            3457999999877  99999999999987  8999998752 222222221111  122221 1122   1122      


Q ss_pred             -cCCCCEEEEcCCCCC-----CC--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           94 -LEDSDVVIIPAGVPR-----KP--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~-----~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                       +...|++|..||...     .+  ..+.   ...+..|+.-...+.+.+.++- ..+.||+++......          
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~----------  175 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK----------  175 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS----------
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc----------
Confidence             237899999999753     11  2222   3345667665555555555443 367777776543211          


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       + .+..-.++.+...-..+-+.+|+.++  +..|++..+
T Consensus       176 -~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  211 (293)
T 3grk_A          176 -V-MPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVNAI  211 (293)
T ss_dssp             -B-CTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -C-CCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEEEE
Confidence             1 23333334432223445666776663  445555444

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.47  E-value=0.016  Score=57.27  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=77.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCC-CCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALED-SDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~-aDiVIi~  103 (358)
                      +.+||.|||. |..|.+.|..|...|.  +|..+|.++.  ......|....  .++.  .+. +..+.+.+ +|+||.+
T Consensus         8 ~~k~v~viG~-G~sG~s~A~~l~~~G~--~V~~~D~~~~~~~~~~~~L~~~g--i~~~--~g~-~~~~~~~~~~d~vv~s   79 (451)
T 3lk7_A            8 ENKKVLVLGL-ARSGEAAARLLAKLGA--IVTVNDGKPFDENPTAQSLLEEG--IKVV--CGS-HPLELLDEDFCYMIKN   79 (451)
T ss_dssp             TTCEEEEECC-TTTHHHHHHHHHHTTC--EEEEEESSCGGGCHHHHHHHHTT--CEEE--ESC-CCGGGGGSCEEEEEEC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEeCCcccCChHHHHHHhCC--CEEE--ECC-ChHHhhcCCCCEEEEC
Confidence            4579999998 9999999999999998  9999998651  12223444332  2333  332 22334566 9999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAG  163 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg  163 (358)
                      .|+|...-+ ......++++++.++-- +.+..+ ..+|-+|=..+  ..|.+++++++..|
T Consensus        80 pgi~~~~p~-~~~a~~~gi~v~~~~e~-~~~~~~-~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           80 PGIPYNNPM-VKKALEKQIPVLTEVEL-AYLVSE-SQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             TTSCTTSHH-HHHHHHTTCCEECHHHH-HHHHCC-SEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CcCCCCChh-HHHHHHCCCcEEeHHHH-HHHhcC-CCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            988753211 11122334444433221 222333 35666776665  67778888888877

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.46  E-value=0.021  Score=53.96  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=30.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe-cCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D-~~~   64 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.| +++
T Consensus        46 ~k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~   81 (328)
T 2qhx_A           46 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   81 (328)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35788999999999999999999987  899999 764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.46  E-value=0.016  Score=53.92  Aligned_cols=117  Identities=11%  Similarity=0.191  Sum_probs=68.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCC-CccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~-~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..... ..++.... +-+|   ..+++     
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  102 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA  102 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999987  8999998752  222333332211 01333332 1122   22222     


Q ss_pred             --CCCCEEEEcCCCCCCC-----CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 --EDSDVVIIPAGVPRKP-----GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~-----g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        ...|++|..||.....     ..+.   ...+..|+    .+.+.+.+.+.+..  +.||+++.-
T Consensus       103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS~  167 (297)
T 1xhl_A          103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSI  167 (297)
T ss_dssp             HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCG
T ss_pred             hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcCc
Confidence              2789999999864321     1222   23445554    34455555555433  667766643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.46  E-value=0.015  Score=53.33  Aligned_cols=116  Identities=14%  Similarity=0.187  Sum_probs=67.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCC-CccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINT-RSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~-~~~v~~~~-~~~d---~~~al------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..... ..++.... +-+|   ..+++      
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            45799999999999999999999987  8999998752  222333432211 01343332 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCC-C------CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRK-P------GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~-~------g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|++|..||.... +      ..+.   ...+..|+.    +.+.+.+.+.+..  +.||+++.-
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS~  149 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSSI  149 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCG
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecCc
Confidence             268999999986432 1      1222   233455544    4455555554443  667766653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.46  E-value=0.017  Score=52.66  Aligned_cols=116  Identities=15%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++.     .++.... +-+|   ..++++      
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALE-----AEAIAVVADVSDPKAVEAVFAEALEEF   78 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCC-----SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  22222221     1233221 1122   222232      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCc
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNS  150 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~  150 (358)
                       ..|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- ..+.||+++.....
T Consensus        79 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~  141 (263)
T 2a4k_A           79 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL  141 (263)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc
Confidence             469999999864321   1222   3345677666666666655543 14677777766544

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.46  E-value=0.037  Score=50.51  Aligned_cols=117  Identities=14%  Similarity=0.081  Sum_probs=69.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++.... +-+|   ..+++      
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   95 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHV   95 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998752  22223333222  1233321 1122   11222      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 --EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                        ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++...
T Consensus        96 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~  160 (273)
T 1ae1_A           96 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIA  160 (273)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGG
T ss_pred             cCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCHh
Confidence              5789999999974321   1222   233445543    4455555555543 46677776543

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.45  E-value=0.025  Score=51.05  Aligned_cols=119  Identities=16%  Similarity=0.173  Sum_probs=68.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEe-cCCcc---ccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYM-GNDQL---GQA------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~-~~~d~---~~a------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++.... ...++.... +-+|.   .+.      
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   83 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ   83 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence            455899999999999999999999887  899999876  223333333211 001222221 11221   122      


Q ss_pred             -cCCCCEEEEcCCCCCCC--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           94 -LEDSDVVIIPAGVPRKP--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        94 -l~~aDiVIi~ag~~~~~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                       +...|++|..||.....  ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++...
T Consensus        84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  147 (250)
T 3nyw_A           84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK-NGYIFNVASRA  147 (250)
T ss_dssp             HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC--
T ss_pred             hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEccHH
Confidence             23689999999974322  2221   23344454    34555566655544 56677776644

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.0072  Score=55.77  Aligned_cols=158  Identities=11%  Similarity=0.108  Sum_probs=86.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +.+.+.|+||+|++|.+++..|+..+.  +|++.|+++  ......++..... ..+.... +-+|   ..+.+      
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999987  899999876  2233333332111 1112221 1122   11222      


Q ss_pred             -CCCCEEEEcCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           95 -EDSDVVIIPAGVPRKP----GMTR---DDLFNINA----GIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~----~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                       ..-|++|..||.....    ..+.   ...+..|+    .+.+.+.+.+.+.. ..+.||+++.-...           
T Consensus       109 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~-----------  177 (281)
T 4dry_A          109 FARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ-----------  177 (281)
T ss_dssp             HSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT-----------
T ss_pred             cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC-----------
Confidence             3679999999974321    1222   23445554    34667777777665 35777777653321           


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+ .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       178 ~~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  214 (281)
T 4dry_A          178 TP-RPNSAPYTATKHAITGLTKSTALDGR--MHDIACGQI  214 (281)
T ss_dssp             CC-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CC-CCCChhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            11 22233333332223345566666653  445555444

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.45  E-value=0.0078  Score=55.17  Aligned_cols=115  Identities=15%  Similarity=0.215  Sum_probs=69.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccc-------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQA-------L   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------l   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.       +
T Consensus         4 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            4 DKVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999987  899999875  233334444322  1233221 1122   1122       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      ...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++.-
T Consensus        80 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~  141 (264)
T 3tfo_A           80 GRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGSI  141 (264)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcCH
Confidence            3789999999974321   1222   23344554    34456666666544 5667766553

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.45  E-value=0.013  Score=53.88  Aligned_cols=78  Identities=18%  Similarity=0.167  Sum_probs=51.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----cc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----GQ-------   92 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----~~-------   92 (358)
                      +.+.|.|+||+|++|..++..|+..+.  .|++.|++.  ......++.... ..++.... +-+|.    .+       
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~   87 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKT   87 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHH
Confidence            345789999999999999999999987  899999876  233344454332 12344432 22232    11       


Q ss_pred             ccCCCCEEEEcCCCC
Q 018314           93 ALEDSDVVIIPAGVP  107 (358)
Q Consensus        93 al~~aDiVIi~ag~~  107 (358)
                      .+...|++|..||..
T Consensus        88 ~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           88 HFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHSSCCEEEECCCCC
T ss_pred             hCCCCCEEEECCccc
Confidence            124789999999974

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.44  E-value=0.0058  Score=55.55  Aligned_cols=110  Identities=24%  Similarity=0.202  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cccc-------cCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LEDS   97 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~a   97 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|++....     ....   .+.  .+-+|   ..++       +...
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~~~---~~~--~Dl~d~~~v~~~~~~~~~~~g~i   88 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPP-----EGFL---AVK--CDITDTEQVEQAYKEIEETHGPV   88 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCC-----TTSE---EEE--CCTTSHHHHHHHHHHHHHHTCSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhh-----ccce---EEE--ecCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999986  899999865210     0000   000  01111   1122       3356


Q ss_pred             CEEEEcCCCCCCC------CCCHHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314           98 DVVIIPAGVPRKP------GMTRDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus        98 DiVIi~ag~~~~~------g~~r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      |++|..||.....      .+.....+..|+.-    .+.+.+.+.+.. .+.||+++.-...
T Consensus        89 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~~~  150 (253)
T 2nm0_A           89 EVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK-KGRVVLISSVVGL  150 (253)
T ss_dssp             SEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCCCCC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECchhhC
Confidence            9999999864321      12234455666554    445555555443 5667777765543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.43  E-value=0.033  Score=51.39  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=30.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEe-cCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYD-IAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D-~~~   64 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.| ++.
T Consensus         9 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~   44 (291)
T 1e7w_A            9 VPVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSA   44 (291)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCH
Confidence            35789999999999999999999987  899999 765

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.43  E-value=0.02  Score=52.24  Aligned_cols=115  Identities=16%  Similarity=0.167  Sum_probs=66.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHh-hcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADV-GHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl-~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|++..  .....++ ....  .++..+. +-+|   +.+++      
T Consensus        21 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           21 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999987  8999998752  2223333 1111  1233221 1122   12222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHH----HHHHHHHHhhCCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIV----KDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~----~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       ...|++|..||.....   ..+.   ...+..|+.-.    +.+.+.+++.. .+.||+++..
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  159 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIGSL  159 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEECCc
Confidence             3789999999975321   1222   23445555444    44455554433 4566666543

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=95.44  E-value=0.00049  Score=60.92  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...+||+|||+ |.+|..++..|...+.  +|.++|+++.   ...+...    .+..   . ++.++++++|+||++.
T Consensus        17 ~~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~~---~-~~~~~~~~aDvVilav   81 (201)
T 2yjz_A           17 EKQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAEV---L-CYSEAASRSDVIVLAV   81 (201)
Confidence            35579999997 9999999999888776  7899997642   1112111    1221   1 3456789999999985

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.41  E-value=0.062  Score=49.85  Aligned_cols=118  Identities=22%  Similarity=0.289  Sum_probs=70.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---c-------cc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---G-------QA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a   93 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++  ......++.... ..++..+. +-+|.   .       +.
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999876  334444554432 12343332 11221   1       12


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           94 LEDSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +...|++|..||.... +  ..+.   ...+..|+.    +.+.+.+.+.+... +.||+++.-.
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-g~iV~isS~~  180 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGR-GRVILTSSIT  180 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSS-CEEEEECCSB
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CEEEEEeChh
Confidence            3367999999986432 1  2232   234455544    44555555566553 4566665543

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=96.40  E-value=0.0087  Score=54.91  Aligned_cols=156  Identities=11%  Similarity=0.149  Sum_probs=86.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.++  ......++....  .++.... +-+|   ..+.++     
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  100 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQ  100 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  899999875  233334444322  1233221 1111   222222     


Q ss_pred             --CCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           96 --DSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        96 --~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                        ..|++|..||.....   ..+..   ..+..|+    .+.+...+.+.+.. .+.||+++.....           .+
T Consensus       101 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~-----------~~  168 (271)
T 4ibo_A          101 GIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSE-----------LA  168 (271)
T ss_dssp             TCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------SB
T ss_pred             CCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhC-----------CC
Confidence              789999999974322   22322   3345554    34455566665544 4667766553321           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.+|..++  +..|++..+
T Consensus       169 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (271)
T 4ibo_A          169 -RATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAI  203 (271)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -CCCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEE
Confidence             22222333332223445666676653  455665544

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.38  E-value=0.0028  Score=57.45  Aligned_cols=120  Identities=19%  Similarity=0.197  Sum_probs=67.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc----
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL----   94 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al----   94 (358)
                      +|.-+.+.+.|+||+|++|..++..|+..+.  +|++.|.+. .....++.     .++.... +-+|   ..+++    
T Consensus         4 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~-~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~   75 (257)
T 3tl3_A            4 SMEIRDAVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRG-EDVVADLG-----DRARFAAADVTDEAAVASALDLAE   75 (257)
T ss_dssp             ------CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC-HHHHHHTC-----TTEEEEECCTTCHHHHHHHHHHHH
T ss_pred             cceecCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCch-HHHHHhcC-----CceEEEECCCCCHHHHHHHHHHHH
Confidence            3444556899999999999999999999887  899999854 22222222     1222221 1112   12222    


Q ss_pred             --CCCCEEEEcCCCCCC------C-CCC---HHHHHHHHHH----HHHHHHHHHHhh-------CCCeEEEEeeCCCCc
Q 018314           95 --EDSDVVIIPAGVPRK------P-GMT---RDDLFNINAG----IVKDLCSAIAKY-------CPNAIVNMISNPVNS  150 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~------~-g~~---r~~~~~~N~~----i~~~i~~~i~~~-------~p~a~iiv~tNP~d~  150 (358)
                        ...|++|..||....      . ..+   -...+..|+.    +.+.+.+.+.+.       ...+.||+++.-...
T Consensus        76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~  154 (257)
T 3tl3_A           76 TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAF  154 (257)
T ss_dssp             HHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--
T ss_pred             HhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhc
Confidence              388999999986321      0 122   2334555654    445555555542       335677777766543

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.32  E-value=0.041  Score=50.54  Aligned_cols=35  Identities=23%  Similarity=0.295  Sum_probs=31.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            45799999999999999999999886  899999876

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.30  E-value=0.017  Score=52.65  Aligned_cols=146  Identities=15%  Similarity=0.098  Sum_probs=81.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++..         .  .++.... +-+|   +.+++       .+
T Consensus         8 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~---------~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   74 (264)
T 2dtx_A            8 DKVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPG---------E--AKYDHIECDVTNPDQVKASIDHIFKEYGS   74 (264)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCC---------S--CSSEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCccc---------C--CceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  89999987522         0  0111111 1111   12222       37


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      .|++|..||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++.....           .+ .+
T Consensus        75 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~~-~~  141 (264)
T 2dtx_A           75 ISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRS-RDPSIVNISSVQAS-----------II-TK  141 (264)
T ss_dssp             CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEECCGGGT-----------SC-CT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECCchhc-----------cC-CC
Confidence            89999999864321   1222   3345566554    44444444433 24567766653321           11 22


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      ..-.++.+......+-+.++..++  +. |++.++.
T Consensus       142 ~~~~Y~~sK~a~~~~~~~la~e~~--~~-i~vn~v~  174 (264)
T 2dtx_A          142 NASAYVTSKHAVIGLTKSIALDYA--PL-LRCNAVC  174 (264)
T ss_dssp             TBHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             CchhHHHHHHHHHHHHHHHHHHhc--CC-cEEEEEE
Confidence            222233332223445566677764  34 7666554

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.29  E-value=0.019  Score=52.07  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=84.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  ++++. +.++  ......++....  .++.... +-+|   ..+.+      
T Consensus         4 ~k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (258)
T 3oid_A            4 NKCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDET   79 (258)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999987  78886 5544  223333444322  2333332 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 -EDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                       ..-|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++.-...           .+
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~~-----------~~  147 (258)
T 3oid_A           80 FGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG-GGHIVSISSLGSI-----------RY  147 (258)
T ss_dssp             HSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEEEEGGGT-----------SB
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECchhhC-----------CC
Confidence             3559999999864321   1222   223455544    4455555555443 5667766653321           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.+|..++  ++.|++..+
T Consensus       148 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  182 (258)
T 3oid_A          148 -LENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAV  182 (258)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             22223333332223455667777763  555665544

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.29  E-value=0.033  Score=49.92  Aligned_cols=154  Identities=18%  Similarity=0.242  Sum_probs=86.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      +++.|+||+|++|.+++..|+..+.  +|++.|.+.   .+....++....  .++.... +-+|   ..+.++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKG--VDSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999987  888888754   223333343322  1233221 1122   222233      


Q ss_pred             -CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           96 -DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        96 -~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                       ..|++|..||.....   ..+.   ...+..|+.    +.+...+.+.+.. .+.||+++.-.           -..+ 
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~-----------~~~~-  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVV-----------GAVG-  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHH-----------HHHC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchh-----------hcCC-
Confidence             789999999975321   2222   234555544    4455555556554 45666665421           1222 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+......+-+.+++.++  ++.|++..+
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v  182 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAV  182 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            44444444443333455666776653  455665555

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.28  E-value=0.031  Score=50.40  Aligned_cols=117  Identities=12%  Similarity=0.072  Sum_probs=66.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .++++.|+||+|++|..++..|+..+.  +|++.+.+..  .....++.... ..++.... +-+|   ..++++     
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   82 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKDV-EERLQFVQADVTKKEDLHKIVEEAMSH   82 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGGG-GGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999987  8999887652  11122221111 12344332 1122   222232     


Q ss_pred             --CCCEEEEcCCC--CC-CC--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 --DSDVVIIPAGV--PR-KP--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 --~aDiVIi~ag~--~~-~~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                        ..|++|..||.  .. .+  ..+.   ...+..|+.    +.+.+.+.+++.. .+.+|+++..
T Consensus        83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss~  147 (264)
T 3i4f_A           83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGFQ  147 (264)
T ss_dssp             HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCT
T ss_pred             hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence              78999999993  21 11  1232   234455544    4455555556554 4566666543

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=96.27  E-value=0.036  Score=50.39  Aligned_cols=116  Identities=17%  Similarity=0.234  Sum_probs=66.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al------   94 (358)
                      +++|.|+||+|++|..++..|+..+.  +|++.+.+.   ......++....  .++.... +-+|   ..+.+      
T Consensus        26 ~k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~  101 (272)
T 4e3z_A           26 TPVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQ  101 (272)
T ss_dssp             SCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            45788999999999999999999987  777764433   222233333222  2333332 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC----CCH---HHHHHHHH----HHHHHHHHHHHhh--CCCeEEEEeeCC
Q 018314           95 -EDSDVVIIPAGVPRKPG----MTR---DDLFNINA----GIVKDLCSAIAKY--CPNAIVNMISNP  147 (358)
Q Consensus        95 -~~aDiVIi~ag~~~~~g----~~r---~~~~~~N~----~i~~~i~~~i~~~--~p~a~iiv~tNP  147 (358)
                       ...|+||..||.....+    .+.   ...+..|+    .+.+.+.+.+.+.  ...+.||+++..
T Consensus       102 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  168 (272)
T 4e3z_A          102 FGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM  168 (272)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence             36799999999754221    222   23445554    3445555555553  235667766653

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=96.25  E-value=0.05  Score=49.70  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=71.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---------HHHHHHhhcCCCCccEEEEe-cCCcc---cc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---------PGVAADVGHINTRSEVAGYM-GNDQL---GQ   92 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---------~~~~~dl~~~~~~~~v~~~~-~~~d~---~~   92 (358)
                      -+.+++.|+||+|++|..++..|+..+.  +|++.|++..         .....++....  .++.... +-+|.   .+
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~   79 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRA   79 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHH
Confidence            3456899999999999999999999987  8999998751         12222332211  1233221 11221   11


Q ss_pred             c-------cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcch
Q 018314           93 A-------LEDSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTV  152 (358)
Q Consensus        93 a-------l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t  152 (358)
                      .       +...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++. ..+.||+++.......
T Consensus        80 ~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~~~  155 (274)
T 3e03_A           80 AVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA-PNPHILTLAPPPSLNP  155 (274)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS-SSCEEEECCCCCCCCH
T ss_pred             HHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc-CCceEEEECChHhcCC
Confidence            2       23789999999974322   1222   234455544    445555555443 3567777777665443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.25  E-value=0.014  Score=53.21  Aligned_cols=75  Identities=19%  Similarity=0.302  Sum_probs=49.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-------------------cHHH--HHHhhcCCCCccEEEEec
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-------------------TPGV--AADVGHINTRSEVAGYMG   86 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-------------------~~~~--~~dl~~~~~~~~v~~~~~   86 (358)
                      ..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.                   .+..  +..+.+.....++..+..
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            358999998 9999999999998885 5999999875                   1222  223333222234444321


Q ss_pred             C---CccccccCCCCEEEEcC
Q 018314           87 N---DQLGQALEDSDVVIIPA  104 (358)
Q Consensus        87 ~---~d~~~al~~aDiVIi~a  104 (358)
                      .   .++.+.++++|+||.+.
T Consensus       109 ~~~~~~~~~~~~~~DvVi~~~  129 (249)
T 1jw9_B          109 LLDDAELAALIAEHDLVLDCT  129 (249)
T ss_dssp             CCCHHHHHHHHHTSSEEEECC
T ss_pred             cCCHhHHHHHHhCCCEEEEeC
Confidence            1   12334578999999875

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=96.22  E-value=0.052  Score=50.19  Aligned_cols=157  Identities=16%  Similarity=0.113  Sum_probs=88.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEe-cCCc---cccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYM-GNDQ---LGQA-----   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a-----   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|.+..    ......+....  .++.... +-+|   .++.     
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~  123 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAR  123 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998631    11222222221  2333321 1112   1111     


Q ss_pred             --cCCCCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           94 --LEDSDVVIIPAGVPRKP----GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        94 --l~~aDiVIi~ag~~~~~----g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                        +...|++|..||.....    ..+   -...+..|+.-...+.+.+.++- ..+.||+++.-...           .+
T Consensus       124 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~-----------~~  192 (294)
T 3r3s_A          124 EALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAY-----------QP  192 (294)
T ss_dssp             HHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGT-----------SC
T ss_pred             HHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhc-----------cC
Confidence              24789999999974321    222   23456777777777777766654 34677766653321           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.+++.++  ++.|++..+
T Consensus       193 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  227 (294)
T 3r3s_A          193 -SPHLLDYAATKAAILNYSRGLAKQVA--EKGIRVNIV  227 (294)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence             22222333332223445566666652  445555444

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.22  E-value=0.0066  Score=56.34  Aligned_cols=151  Identities=17%  Similarity=0.202  Sum_probs=80.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +++||+|+||+|.||+.++..+...+-. ||+ .+|.+.......|+.... ....+..   ++|+++.++++|+||...
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv~v---~~dl~~ll~~~DVVIDfT   81 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGVAL---TDDIERVCAEADYLIDFT   81 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSCBC---BCCHHHHHHHCSEEEECS
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCcee---cCCHHHHhcCCCEEEEcC
Confidence            3689999998799999999888877643 444 467754211112222221 1112332   356777788999998864


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec-ccc---HHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT-TLD---VVR  180 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t-~ld---s~R  180 (358)
                      .                -+...+.++...+.+.+  ++ ++++- ....-..++.+.+...  .-+++.. .+.   -.+
T Consensus        82 ~----------------p~a~~~~~~~al~~G~~--vV-igTTG-~s~~~~~~L~~aa~~~--~vv~a~N~s~Gv~l~~~  139 (272)
T 4f3y_A           82 L----------------PEGTLVHLDAALRHDVK--LV-IGTTG-FSEPQKAQLRAAGEKI--ALVFSANMSVGVNVTMK  139 (272)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCE--EE-ECCCC-CCHHHHHHHHHHTTTS--EEEECSCCCHHHHHHHH
T ss_pred             C----------------HHHHHHHHHHHHHcCCC--EE-EECCC-CCHHHHHHHHHHhccC--CEEEECCCCHHHHHHHH
Confidence            1                12233444444555433  23 33321 1111122222322211  1133221 122   235


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAG  206 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~  206 (358)
                      |...+|+.++   .+.++-++--|+.
T Consensus       140 ~~~~aa~~l~---~~~diei~E~HH~  162 (272)
T 4f3y_A          140 LLEFAAKQFA---QGYDIEIIEAHHR  162 (272)
T ss_dssp             HHHHHHHHTS---SSCEEEEEEEECT
T ss_pred             HHHHHHHhcC---cCCCEEEEEecCC
Confidence            6677788875   4678888988987

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.21  E-value=0.017  Score=53.20  Aligned_cols=115  Identities=17%  Similarity=0.116  Sum_probs=71.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccccC---CCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE---DSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~---~aDi   99 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++.....  +.+.. ..++.... +-+|   ..++++   ..|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~--~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEA--AARTM-AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            346899999999999999999999986  89999987522221  11111 12344332 1122   222333   6699


Q ss_pred             EEEcCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          100 VIIPAGVPRKP----GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       100 VIi~ag~~~~~----g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +|..||.....    .+.-...+..|..-...+.+.+.++-.. .||+++..
T Consensus        90 lv~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~  140 (291)
T 3rd5_A           90 LINNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSM  140 (291)
T ss_dssp             EEECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCG
T ss_pred             EEECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeech
Confidence            99999974322    1223456778877777777777666533 45655543

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.18  E-value=0.02  Score=51.95  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=87.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE-ecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-----
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY-DIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-----   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~-D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-----   94 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++. +.++  ......++.....  ++.... +-+|   ..+.+     
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~   82 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGR--SALAIKADLTNAAEVEAAISAAAD   82 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTS--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999987  88888 4443  2222334433221  222221 1122   22222     


Q ss_pred             --CCCCEEEEcCCCC--CCC--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 --EDSDVVIIPAGVP--RKP--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 --~~aDiVIi~ag~~--~~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                        ...|++|..||..  ..+  ..+.   ...+..|+.-...+.+.+.++- +.+.||+++....          ...+ 
T Consensus        83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~----------~~~~-  151 (259)
T 3edm_A           83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG----------RDGG-  151 (259)
T ss_dssp             HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH----------HHCC-
T ss_pred             HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh----------ccCC-
Confidence              2789999999854  222  2232   3456677766666666665553 2456666654321          0122 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+......+-+.+|..++  +. |++..+
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~-I~vn~v  185 (259)
T 3edm_A          152 GPGALAYATSKGAVMTFTRGLAKEVG--PK-IRVNAV  185 (259)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHC--CC-CEEEEE
Confidence            33333344433333456677777775  33 766555

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.18  E-value=0.038  Score=50.59  Aligned_cols=156  Identities=12%  Similarity=0.120  Sum_probs=90.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++  ....+.++.....  ++..+. +-+|          ..+.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~l~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGA--RVILNDIRATLLAESVDTLTRKGY--DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            44677889999999999999999997  899999976  2333444543321  222211 1111          12334


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.....   ..+..   ..+..|    .-..+..++.+.+....+.||+++.-....           + 
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~-----------~-  152 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA-----------A-  152 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------B-
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC-----------C-
Confidence            5789999999974322   22322   234444    345677888887766678888876544221           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       153 ~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~V  187 (255)
T 4g81_D          153 RPTVAPYTAAKGGIKMLTCSMAAEWA--QFNIQTNAI  187 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            12111222221112345677777763  666766555

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=96.17  E-value=0.053  Score=49.21  Aligned_cols=157  Identities=15%  Similarity=0.146  Sum_probs=89.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc---
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL---   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al---   94 (358)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|...     ......++....  .++.... +-+|   ..+.+   
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~   85 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFA   85 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHH
Confidence            345899999999999999999999987  899987643     122233443322  2343332 1122   22222   


Q ss_pred             ----CCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 ----EDSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ----~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                          ...|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- +.+.||+++....         ...  
T Consensus        86 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~---------~~~--  154 (262)
T 3ksu_A           86 EKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL---------AAY--  154 (262)
T ss_dssp             HHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH---------HHH--
T ss_pred             HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh---------ccC--
Confidence                3789999999965322   1222   3345677766666666665542 3566776655321         111  


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+......+-+.++..++  +..|++..+
T Consensus       155 -~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  189 (262)
T 3ksu_A          155 -TGFYSTYAGNKAPVEHYTRAASKELM--KQQISVNAI  189 (262)
T ss_dssp             -HCCCCC-----CHHHHHHHHHHHHTT--TTTCEEEEE
T ss_pred             -CCCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEE
Confidence             23334566654444567788888874  455665544

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.16  E-value=0.011  Score=52.89  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=73.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC----------CccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----------DQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----------~d~~~al~~   96 (358)
                      +.+++.|+||+|++|..++..|+. +.  .|++.|.++...  .++.+..   .+......          .+..+.+..
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~--~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHL--AALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHH--HHHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHH--HHHHhhc---CCcceecccchHHHHHHHHHHHHhcCC
Confidence            345899999999999999999976 43  799999865211  1122211   12211100          011123457


Q ss_pred             CCEEEEcCCCCCCCC---CCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKPG---MTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~g---~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      .|++|..||......   .+.   ...+..|+.    +.+.+.+.+++..  +.+|+++......           + .+
T Consensus        76 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~~~~-----------~-~~  141 (245)
T 3e9n_A           76 VDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGAGNG-----------P-HP  141 (245)
T ss_dssp             CSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC---------------------
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCccccc-----------C-CC
Confidence            899999998743221   111   223444543    4666666666553  5666665543211           1 22


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+......+-+.+++.++  +..|++.++
T Consensus       142 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  174 (245)
T 3e9n_A          142 GNTIYAASKHALRGLADAFRKEEA--NNGIRVSTV  174 (245)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            333334432223345566666653  344555444

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.14  E-value=0.014  Score=57.48  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...++|+|+|. |.+|..++..|...+.  +|+.+|+++... .+.+.   .    .+.    .++.+++++||+|+.+.
T Consensus       209 L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A~~~---G----~~~----~sL~eal~~ADVVilt~  274 (436)
T 3h9u_A          209 IAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQAAME---G----YQV----LLVEDVVEEAHIFVTTT  274 (436)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---T----CEE----CCHHHHTTTCSEEEECS
T ss_pred             ccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHHHHh---C----Cee----cCHHHHHhhCCEEEECC
Confidence            45679999998 9999999999987775  899999875222 22211   1    121    24678999999999876


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      +...--+.                 +.++...|++++++++++..
T Consensus       275 gt~~iI~~-----------------e~l~~MK~gAIVINvgRg~v  302 (436)
T 3h9u_A          275 GNDDIITS-----------------EHFPRMRDDAIVCNIGHFDT  302 (436)
T ss_dssp             SCSCSBCT-----------------TTGGGCCTTEEEEECSSSGG
T ss_pred             CCcCccCH-----------------HHHhhcCCCcEEEEeCCCCC
Confidence            53221111                 12444568999999988753

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.14  E-value=0.041  Score=45.50  Aligned_cols=84  Identities=12%  Similarity=0.143  Sum_probs=52.8

Q ss_pred             CCceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ++.+|+|||++   |.+|..++..|...++  +|+-+|....     .+   .   .+..+   .++.+..+++|+|+++
T Consensus        13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~V~~vnp~~~-----~i---~---G~~~~---~s~~el~~~vDlvii~   76 (138)
T 1y81_A           13 EFRKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD-----EI---E---GLKCY---RSVRELPKDVDVIVFV   76 (138)
T ss_dssp             -CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EE---T---TEECB---SSGGGSCTTCCEEEEC
T ss_pred             CCCeEEEEeecCCCCCHHHHHHHHHHHCCC--EEEEeCCCCC-----eE---C---Ceeec---CCHHHhCCCCCEEEEE
Confidence            46699999965   8999999999988887  6555444321     01   1   23333   3445555789999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                      ..                .+.+.++++.+.+.+.+++++
T Consensus        77 vp----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           77 VP----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             SC----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             eC----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            51                245555555565566666443

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.12  E-value=0.03  Score=49.88  Aligned_cols=109  Identities=19%  Similarity=0.210  Sum_probs=65.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC--Cccc-------cccCCCCE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN--DQLG-------QALEDSDV   99 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~--~d~~-------~al~~aDi   99 (358)
                      +++.|+||+|++|..++..|+..+.  +|++.|++... ...++.  .   .... .+-  .+..       +.+.+.|+
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~--~---~~~~-~D~~~~~~~~~~~~~~~~~g~id~   73 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG--A---VPLP-TDLEKDDPKGLVKRALEALGGLHV   73 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT--C---EEEE-CCTTTSCHHHHHHHHHHHHTSCCE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC--c---EEEe-cCCchHHHHHHHHHHHHHcCCCCE
Confidence            4799999999999999999999886  89999987632 222231  0   1100 011  1111       12347999


Q ss_pred             EEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          100 VIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       100 VIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +|..||.....   ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++..
T Consensus        74 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  130 (239)
T 2ekp_A           74 LVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGSV  130 (239)
T ss_dssp             EEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECch
Confidence            99999864321   2222   23344454    34555556555544 4566766643

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.10  E-value=0.012  Score=54.23  Aligned_cols=116  Identities=18%  Similarity=0.189  Sum_probs=68.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++  ......++....  .++.... +-+|   ..+.+       
T Consensus         8 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            8 GKIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRF   83 (280)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45789999999999999999999987  899999876  233333443322  2333321 1112   12222       


Q ss_pred             CCCCEEEEcCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKP----GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~----g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ...|++|..||.....    ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++...
T Consensus        84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~  147 (280)
T 3tox_A           84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG-GGSLTFTSSFV  147 (280)
T ss_dssp             SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCSB
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcChh
Confidence            3789999999964221    2232   233445543    4455555555443 56677666543

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.08  E-value=0.022  Score=52.35  Aligned_cols=116  Identities=12%  Similarity=0.092  Sum_probs=68.7

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCc---ccccc-------
Q 018314           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------   94 (358)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|.++. .....++........... .+-+|   ..+++       
T Consensus        21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~Dl~~~~~v~~~~~~~~~~~   97 (285)
T 2p91_A           21 GKRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVK-CDVSLDEDIKNLKKFLEENW   97 (285)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEE-cCCCCHHHHHHHHHHHHHHc
Confidence            4579999998  8999999999999886  8999998752 222333322110111111 11122   22222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC--PNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tN  146 (358)
                      ...|++|..||....     +  ..+.   ...+..|+.-...+.+.+.++-  ..+.||+++.
T Consensus        98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A           98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            368999999997532     1  2222   3456677766666666655542  2467777765

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.02  E-value=0.0092  Score=52.88  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++|.|+||+|++|..++..|+..+.  +|++.|+++
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~   36 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   36 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCc
Confidence            5899999999999999999998886  899999875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.011  Score=53.55  Aligned_cols=150  Identities=15%  Similarity=0.176  Sum_probs=81.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------C
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (358)
                      +++.|+||+|++|..++..|+..+....|++.+.++.  .....++.     .++.... +-+|   ..+.+       .
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG-----DRFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG-----GGEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC-----CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999988764348888887652  22222221     1233221 1122   12222       3


Q ss_pred             CCCEEEEcCCCCC--CC--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           96 DSDVVIIPAGVPR--KP--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        96 ~aDiVIi~ag~~~--~~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..|++|..||...  .+  ..+..   ..+..|    ..+.+.+.+.+++..  +.||+++.......            
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~~~~~------------  143 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDACNMY------------  143 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSCCCCS------------
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCchhccC------------
Confidence            7899999999732  22  22322   234445    345566666666654  66777766543221            


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+......+-+.++..+    ..|++..+
T Consensus       144 ~~~~~~Y~asK~a~~~~~~~la~e~----~~i~vn~v  176 (254)
T 3kzv_A          144 FSSWGAYGSSKAALNHFAMTLANEE----RQVKAIAV  176 (254)
T ss_dssp             SCCSHHHHHHHHHHHHHHHHHHHHC----TTSEEEEE
T ss_pred             CCCcchHHHHHHHHHHHHHHHHhhc----cCcEEEEE
Confidence            2222223333222344556667665    34665544

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.99  E-value=0.013  Score=53.11  Aligned_cols=115  Identities=13%  Similarity=0.095  Sum_probs=69.2

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc---cccccC-----
Q 018314           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ---LGQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~-----   95 (358)
                      .+++.|+||+  |++|..++..|+..+.  +|++.|.++. .....++.....  .+.... +-+|   ..++++     
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKEA   83 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEECCCCCHHHHHHHHHHHHHH
Confidence            4589999998  8999999999999886  8999998752 222333322111  111111 1122   222233     


Q ss_pred             --CCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           96 --DSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        96 --~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                        ..|++|..||....     +  ..+.   ...+..|+.-...+.+.+.++- ..+.||+++.
T Consensus        84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence              67999999997532     1  2222   3456677776666666665442 2366777765

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=95.99  E-value=0.016  Score=54.02  Aligned_cols=98  Identities=19%  Similarity=0.232  Sum_probs=63.5

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-+.++|+|||+ |.+|..++..+...+.  +|..+|+......  .+....  ...  .. ..++.+.+++||+|+.+.
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~--~~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~~  221 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLA--RIAEMG--MEP--FH-ISKAAQELRDVDVCINTI  221 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--SEE--EE-GGGHHHHTTTCSEEEECC
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHH--HHHHCC--Cee--cC-hhhHHHHhcCCCEEEECC
Confidence            345679999997 9999999999988776  8999998652211  111111  121  11 235667789999999986


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee-CCCCc
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t-NP~d~  150 (358)
                      ..    +.-       |.       ..++...|.+++++++ +|.++
T Consensus       222 p~----~~i-------~~-------~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          222 PA----LVV-------TA-------NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             SS----CCB-------CH-------HHHHHSCTTCEEEECSSTTCSB
T ss_pred             Ch----HHh-------CH-------HHHHhcCCCCEEEEecCCCCCC
Confidence            32    210       11       1233445788999887 77764

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.98  E-value=0.01  Score=54.89  Aligned_cols=78  Identities=17%  Similarity=0.207  Sum_probs=51.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi  102 (358)
                      +.+++.|+||+|.+|..++..|+..+.  +|+++|++.  ....+.++.... ...+....  ..+++.+.++++|+||.
T Consensus       118 ~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~DvlVn  194 (287)
T 1lu9_A          118 KGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRF-KVNVTAAETADDASRAEAVKGAHFVFT  194 (287)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHH-TCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcC-CcEEEEecCCCHHHHHHHHHhCCEEEE
Confidence            456899999779999999999999886  699999875  222333332210 01111111  11234566788999999


Q ss_pred             cCCCC
Q 018314          103 PAGVP  107 (358)
Q Consensus       103 ~ag~~  107 (358)
                      ++|..
T Consensus       195 ~ag~g  199 (287)
T 1lu9_A          195 AGAIG  199 (287)
T ss_dssp             CCCTT
T ss_pred             CCCcc
Confidence            99753

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=95.97  E-value=0.018  Score=53.05  Aligned_cols=70  Identities=14%  Similarity=0.285  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +.+||+|||+ |.+|.+++..|...+.  +|.++|++...  +.++.+..   .+...   +++.+.++++|+||.+...
T Consensus       128 ~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~--~~~l~~~~---g~~~~---~~~~~~~~~aDiVi~atp~  196 (275)
T 2hk9_A          128 KEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEK--AIKLAQKF---PLEVV---NSPEEVIDKVQVIVNTTSV  196 (275)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHH--HHHHTTTS---CEEEC---SCGGGTGGGCSEEEECSST
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHH--HHHHHHHc---CCeee---hhHHhhhcCCCEEEEeCCC
Confidence            4569999998 9999999999988886  99999986422  22333221   23332   2566788999999998654


Q ss_pred             C
Q 018314          107 P  107 (358)
Q Consensus       107 ~  107 (358)
                      +
T Consensus       197 ~  197 (275)
T 2hk9_A          197 G  197 (275)
T ss_dssp             T
T ss_pred             C
Confidence            3

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.96  E-value=0.024  Score=50.75  Aligned_cols=113  Identities=18%  Similarity=0.212  Sum_probs=66.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc---c---cccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---G---QALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~---~al~~aDiV  100 (358)
                      .++|.|+||+|++|..++..|+..+.  +|++.|+++..  ..++.+..   ++.... +-+|.   .   +.+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~--~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESK--LQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHhcc---CceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            45899999999999999999999986  89999986421  11122111   233221 11221   1   124578999


Q ss_pred             EEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          101 IIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       101 Ii~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      |..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++...
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  135 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVA  135 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSB
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEechH
Confidence            9999865321   1222   233445544    4455555555443 46677666543

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.95  E-value=0.026  Score=51.56  Aligned_cols=116  Identities=13%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             CceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCc---ccccc-------
Q 018314           28 DRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d---~~~al-------   94 (358)
                      .++|.|+||+  |++|..++..|+..+.  +|++.|.++. .....++........... .+-+|   ..+.+       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~-~D~~~~~~v~~~~~~~~~~~   82 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYE-LDVSKEEHFKSLYNSVKKDL   82 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEE-CCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEE-cCCCCHHHHHHHHHHHHHHc
Confidence            4589999998  8999999999999986  8999998762 222333322110111111 11122   12222       


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK-----P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-----~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                      ...|++|..||....     +  ..+.   ...+..|+.-...+.+.+.++- +.+.||+++.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            367999999987532     1  2222   3456677777777776666542 2367777765

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.93  E-value=0.017  Score=55.15  Aligned_cols=97  Identities=22%  Similarity=0.274  Sum_probs=61.9

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ..+-..++|+|||. |.+|..+|..+...+.  +|+.||+......+.++   .    +..    .++.+.+++||+|++
T Consensus       160 ~~~l~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l  225 (335)
T 2g76_A          160 GTELNGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQQ----LPLEEIWPLCDFITV  225 (335)
T ss_dssp             BCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHGGGCSEEEE
T ss_pred             CcCCCcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----cee----CCHHHHHhcCCEEEE
Confidence            34556779999997 9999999999886665  89999987643222221   1    121    245678999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..-.  .+. ++. ++  |       .+.+....|++++|+++-
T Consensus       226 ~~P~--t~~-t~~-li--~-------~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          226 HTPL--LPS-TTG-LL--N-------DNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCCC--CTT-TTT-SB--C-------HHHHTTSCTTEEEEECSC
T ss_pred             ecCC--CHH-HHH-hh--C-------HHHHhhCCCCcEEEECCC
Confidence            8522  111 110 01  1       123444567888888765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=95.92  E-value=0.014  Score=55.50  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=49.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|||. |.+|..++..+...+.  +|+.||++.......++   .    +..    .++.+.+++||+|+++.
T Consensus       147 ~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~~~l~~aDvVil~v  212 (334)
T 2dbq_A          147 DVYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AEF----KPLEDLLRESDFVVLAV  212 (334)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----ccc----CCHHHHHhhCCEEEECC
Confidence            455679999997 9999999999988776  89999987643222221   1    221    24567889999999986


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      .
T Consensus       213 p  213 (334)
T 2dbq_A          213 P  213 (334)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.91  E-value=0.039  Score=52.67  Aligned_cols=98  Identities=16%  Similarity=0.273  Sum_probs=56.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHH-H----hhcCCCCccEEEEecCCcccccc-CC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAA-D----VGHINTRSEVAGYMGNDQLGQAL-ED   96 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~-d----l~~~~~~~~v~~~~~~~d~~~al-~~   96 (358)
                      +.|+||+|+||+|.+|..+...|...+.+ |+..+...+   ..|+.. +    +... ....+...   .|. +++ ++
T Consensus         2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~-~~~~v~~~---~~~-~~~~~~   75 (337)
T 3dr3_A            2 NAMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGI-VELPLQPM---SDI-SEFSPG   75 (337)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTT-CCCBEEEE---SSG-GGTCTT
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCc-cceeEecc---CCH-HHHhcC
Confidence            35789999999999999999988887644 666665433   233322 1    2111 11122211   022 345 89


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +|+|+++.+                ....+++++.+.+.  .+++|-.|.+
T Consensus        76 ~Dvvf~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           76 VDVVFLATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             CSEEEECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             CCEEEECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            999999853                22334555554443  4456656655

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=95.90  E-value=0.019  Score=55.66  Aligned_cols=72  Identities=17%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCChHHHHHH-HHHhCCC-CcEEEEEecCCcHHHH-HHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~-~l~~~~~-~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .++||+|+||+|.+|..+.. .|..+++ ..+++++.... .|.. .++...  ...+..   .++ .++++++|+|+.+
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~~---~~~-~~~~~~vDvvf~a   75 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLKD---ATS-IDDLKKCDVIITC   75 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCEE---TTC-HHHHHTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEEe---CCC-hhHhcCCCEEEEC
Confidence            35799999999999999998 8888874 45888886543 2221 123211  112221   122 2457899999998


Q ss_pred             CC
Q 018314          104 AG  105 (358)
Q Consensus       104 ag  105 (358)
                      .|
T Consensus        76 ~~   77 (377)
T 3uw3_A           76 QG   77 (377)
T ss_dssp             SC
T ss_pred             CC
Confidence            64

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.86  E-value=0.018  Score=51.93  Aligned_cols=156  Identities=15%  Similarity=0.060  Sum_probs=84.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh---CCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc---cccc----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL---GQAL----   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~---~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al----   94 (358)
                      .+++.|+||+|++|..++..|+.   .+.  +|++.|+++  ......++.......++.... +-+|.   .+.+    
T Consensus         6 ~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            34788999999999999999998   676  899999875  222233343211112333322 11221   1111    


Q ss_pred             -----CCCC--EEEEcCCCCCCC-----C-CCH---HHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEeeCCCCcchH
Q 018314           95 -----EDSD--VVIIPAGVPRKP-----G-MTR---DDLFNINAGIVKDLCSAIAKYC-----PNAIVNMISNPVNSTVP  153 (358)
Q Consensus        95 -----~~aD--iVIi~ag~~~~~-----g-~~r---~~~~~~N~~i~~~i~~~i~~~~-----p~a~iiv~tNP~d~~t~  153 (358)
                           ..-|  ++|..||.....     . .+.   ...+..|+.-...+.+.+.++-     ..+.||+++.-...   
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~---  160 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL---  160 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT---
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc---
Confidence                 1347  999999874321     1 232   3355667666555555554432     23667777654321   


Q ss_pred             HHHHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          154 IAAEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       154 ~~~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                              .+ .+..-.++.+......+-+.++..++  +  |++..+
T Consensus       161 --------~~-~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v  195 (259)
T 1oaa_A          161 --------QP-YKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSY  195 (259)
T ss_dssp             --------SC-CTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEE
T ss_pred             --------CC-CCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEe
Confidence                    11 23323333332223445667777764  2  665555

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=95.85  E-value=0.02  Score=55.44  Aligned_cols=70  Identities=19%  Similarity=0.293  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCChHHHHHH-HHHhCCC-CcEEEEEecCCcHHHH-HHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVA-ADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~-~l~~~~~-~~ei~L~D~~~~~~~~-~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|+||+|.+|..+.. .|..+++ ..++.++.... .|.. .++...  ...+..   .++ .+.++++|+|+.+.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~~---~~~-~~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLHD---AFD-IESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCEE---TTC-HHHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEEe---cCC-hhHhccCCEEEECCC
Confidence            699999999999999998 8888874 45888886544 2321 122211  112221   122 245789999999864

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.83  E-value=0.022  Score=53.20  Aligned_cols=152  Identities=14%  Similarity=0.069  Sum_probs=78.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++||+|+||+|.||+.++..+...+-..=+-.+|.+.......|.....  ....+..   ++|+.+.+.++|+||-..
T Consensus        20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v---~~dl~~ll~~aDVvIDFT   96 (288)
T 3ijp_A           20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI---TDDPESAFSNTEGILDFS   96 (288)
T ss_dssp             -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC---BSCHHHHTTSCSEEEECS
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCcee---eCCHHHHhcCCCEEEEcC
Confidence            56799999977999999999888776332244557653211112222221  1123333   357778889999998653


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC----CCCceEeeccccHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY----NEKKLFGVTTLDVVR  180 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~----~~~kviG~t~lds~R  180 (358)
                      .                -+...+.+....+++-+  +++-|-.-+  ..-..++.+.+...    .++--+|+. + -.+
T Consensus        97 ~----------------p~a~~~~~~~~l~~Gv~--vViGTTG~~--~e~~~~L~~aa~~~~~~~a~N~SiGv~-l-l~~  154 (288)
T 3ijp_A           97 Q----------------PQASVLYANYAAQKSLI--HIIGTTGFS--KTEEAQIADFAKYTTIVKSGNMSLGVN-L-LAN  154 (288)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCE--EEECCCCCC--HHHHHHHHHHHTTSEEEECSCCCHHHH-H-HHH
T ss_pred             C----------------HHHHHHHHHHHHHcCCC--EEEECCCCC--HHHHHHHHHHhCcCCEEEECCCcHHHH-H-HHH
Confidence            1                11223333344444432  233333221  11111122222211    111111221 1 236


Q ss_pred             HHHHHHHHcCCCCCCCceEEEeecCC
Q 018314          181 AKTFYAGKANVNVAEVNVPVVGGHAG  206 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~~~v~G~hg~  206 (358)
                      |...+|+.++   .+.++-++--|+.
T Consensus       155 l~~~aa~~l~---~~~dieIiE~HH~  177 (288)
T 3ijp_A          155 LVKRAAKALD---DDFDIEIYEMHHA  177 (288)
T ss_dssp             HHHHHHHHSC---TTSEEEEEEEECT
T ss_pred             HHHHHHHhcC---CCCCEEEEEccCC
Confidence            6677788886   4678889999987

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.83  E-value=0.011  Score=53.95  Aligned_cols=35  Identities=34%  Similarity=0.588  Sum_probs=30.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |.+|+.++..|+..|+ .+|.|+|.+.
T Consensus        28 ~~~VlvvG~-GglG~~va~~La~~Gv-g~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGL-GGLGTPAALYLAGAGV-GTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECC-STTHHHHHHHHHHTTC-SEEEEECCCB
T ss_pred             cCcEEEEcc-CHHHHHHHHHHHHcCC-CeEEEEeCCC
Confidence            459999998 9999999999999985 5999999763

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.82  E-value=0.004  Score=60.93  Aligned_cols=76  Identities=24%  Similarity=0.259  Sum_probs=49.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCC-cEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-c---CCccccccCC--CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLV-SRLALYDIAN--TPGVAADVGHINTRSEVAGYM-G---NDQLGQALED--SD   98 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~-~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~---~~d~~~al~~--aD   98 (358)
                      |+||.|+|| |.+|+.++..|+..+.. .+|++.|++.  ....+.++.... ..++.... +   .+++.+.+++  +|
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            469999998 99999999999988743 6899999876  233333443211 01222211 1   1234556666  89


Q ss_pred             EEEEcCC
Q 018314           99 VVIIPAG  105 (358)
Q Consensus        99 iVIi~ag  105 (358)
                      +||.+++
T Consensus        79 vVin~ag   85 (405)
T 4ina_A           79 IVLNIAL   85 (405)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999986

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=95.76  E-value=0.012  Score=54.86  Aligned_cols=75  Identities=20%  Similarity=0.337  Sum_probs=51.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.+++.|+|| |.+|.+++..|+..+. .+|+++|++..  +..+.++........+.... .+++.+.++++|+||.+-
T Consensus       126 ~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          126 KLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHHHHHHSSEEEECS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHHHHhcCCEEEECC
Confidence            4569999998 9999999999998774 47999998752  33344444321122344432 245667788999999874

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=95.75  E-value=0.026  Score=54.53  Aligned_cols=71  Identities=21%  Similarity=0.399  Sum_probs=46.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++||+|+||+|.+|..+...|...++ ..+|.++......|+...+..    ..+....  .+ .++++++|+||.+.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEee--CC-HHHhcCCCEEEECCC
Confidence            36999999999999999998888742 468888876543333222221    1233211  12 245789999999765

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=95.74  E-value=0.014  Score=55.59  Aligned_cols=67  Identities=25%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||. |.+|+.++..+...+.  +|+.||++.......++       .+..    .++.+.+++||+|+++.
T Consensus       143 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~e~l~~aDiVil~v  208 (333)
T 2d0i_A          143 SLYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KARY----MDIDELLEKSDIVILAL  208 (333)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEEE----CCHHHHHHHCSEEEECC
T ss_pred             CCCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Ccee----cCHHHHHhhCCEEEEcC
Confidence            445679999997 9999999999887776  89999987643222221       1222    24567789999999986


Q ss_pred             C
Q 018314          105 G  105 (358)
Q Consensus       105 g  105 (358)
                      .
T Consensus       209 p  209 (333)
T 2d0i_A          209 P  209 (333)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=95.74  E-value=0.24  Score=44.94  Aligned_cols=150  Identities=15%  Similarity=0.157  Sum_probs=83.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc----------cccccCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALEDS   97 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~~a   97 (358)
                      +.|.|+||++.+|..++..|+..|.  +|++.|+++..  ..++....  .++..+. +-+|          ..+.+..-
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~--~~~~~~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKR--SADFAKER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHTTC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHhc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            3688899999999999999999997  89999987521  12222221  1222221 1111          12345678


Q ss_pred             CEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCC
Q 018314           98 DVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (358)
Q Consensus        98 DiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~  167 (358)
                      |++|..||.....   ..+..   ..+..|+    -..+...+.+.+.  ++.||+++.-...           .+ .|.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~-----------~~-~~~  142 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAF-----------QS-EPD  142 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGT-----------SC-CTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeecccc-----------cC-CCC
Confidence            9999999875422   23322   2344443    3456666666654  4667776543321           11 222


Q ss_pred             CceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .-.++.+.-.-..|-+.+|..++  | +|++-.+
T Consensus       143 ~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I  173 (247)
T 3ged_A          143 SEAYASAKGGIVALTHALAMSLG--P-DVLVNCI  173 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEE
Confidence            11222221112345677788876  4 5765544

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.73  E-value=0.004  Score=56.21  Aligned_cols=109  Identities=17%  Similarity=0.219  Sum_probs=63.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cccc-------cCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQA-------LED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~a-------l~~   96 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|+++....  ++.      .+..  +-+|   ..++       +..
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~------~~~~--D~~~~~~~~~~~~~~~~~~g~   81 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPK--GLF------GVEV--DVTDSDAVDRAFTAVEEHQGP   81 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCT--TSE------EEEC--CTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHH--Hhc------Ceec--cCCCHHHHHHHHHHHHHHcCC
Confidence            345899999999999999999999886  8999998652100  000      0110  1111   1122       236


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++. ..+.||+++...
T Consensus        82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~  142 (247)
T 1uzm_A           82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVS  142 (247)
T ss_dssp             CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHh
Confidence            79999999875321   2222   234455544    344455555443 346677776654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=95.72  E-value=0.064  Score=48.89  Aligned_cols=109  Identities=18%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------   94 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++..      +.... +-+|   ..+.+       
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  8999998752  222222211      22211 1122   22222       


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeC
Q 018314           95 EDSDVVIIPAGVPRK--P--GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~--~--g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ...|++|..||....  +  ..+.   ...+..|+.-    .+.+.+.+++.  .+.||+++.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence            378999999986432  1  1222   2344555443    44445544443  356666654

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.72  E-value=0.018  Score=52.35  Aligned_cols=109  Identities=17%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------C
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------E   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|.+.....     +    .++.... +-+|   ..+.+       .
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~-----~----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   95 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSA-----D----PDIHTVAGDISKPETADRIVREGIERFG   95 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCS-----S----TTEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcc-----c----CceEEEEccCCCHHHHHHHHHHHHHHCC
Confidence            345799999999999999999999987  8999998752100     0    0122211 1111   12222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|++|..||.....   ..+.   ...+..|+.-    .+...+.+.+.. .+.+|+++..
T Consensus        96 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~  156 (260)
T 3un1_A           96 RIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITTS  156 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCT
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEech
Confidence            799999999975322   1222   2344555443    455555555543 4566666543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=95.66  E-value=0.0078  Score=57.45  Aligned_cols=63  Identities=17%  Similarity=0.381  Sum_probs=47.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|||. |.+|+.++..+...+.  +|..||++....      . .    ...+   .++.+.+++||+|+++.
T Consensus       161 ~l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~------~-g----~~~~---~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          161 KFSGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPN------T-N----YTYY---GSVVELASNSDILVVAC  223 (333)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTT------C-C----SEEE---SCHHHHHHTCSEEEECS
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhc------c-C----ceec---CCHHHHHhcCCEEEEec
Confidence            445679999998 9999999999987776  899999875211      0 1    1221   35667899999999985

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=95.66  E-value=0.029  Score=50.25  Aligned_cols=117  Identities=17%  Similarity=0.143  Sum_probs=67.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCcc---ccccC-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL---GQALE-----   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~---~~al~-----   95 (358)
                      .+++.|+||+|++|..++..|+..+.  .+++.+.+.   ......++....  .++.... +-+|.   ++.++     
T Consensus         7 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (255)
T 3icc_A            7 GKVALVTGASRGIGRAIAKRLANDGA--LVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNE   82 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCSHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCchHHHHHHHHHHHhcC--CceEEEecCcCCHHHHHHHHHHHHHH
Confidence            45799999999999999999999986  777764443   223333443322  1233221 11121   11111     


Q ss_pred             --------CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCC
Q 018314           96 --------DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPV  148 (358)
Q Consensus        96 --------~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~  148 (358)
                              ..|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- +.+.||+++...
T Consensus        83 ~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~  150 (255)
T 3icc_A           83 LQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  150 (255)
T ss_dssp             HHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGG
T ss_pred             hcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChh
Confidence                    289999999874321   1222   2345566666566666555442 346677776543

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=95.66  E-value=0.013  Score=53.97  Aligned_cols=152  Identities=20%  Similarity=0.191  Sum_probs=82.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc-------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA-------   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   93 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|++..  .....++   .  .++.... +-+|.   .+.       
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   76 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAERLRELEVAH---G--GNAVGVVGDVRSLQDQKRAAERCLAA   76 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT---B--TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHc---C--CcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence            445899999999999999999999987  8999998752  1111211   1  1233221 11221   112       


Q ss_pred             cCCCCEEEEcCCCCCCC--------CCC---HHHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           94 LEDSDVVIIPAGVPRKP--------GMT---RDDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~--------g~~---r~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                      +..-|++|..||.....        ..+   -...+..|+    .+.+.+.+.+.+.  .+.+|+++.-....       
T Consensus        77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------  147 (281)
T 3zv4_A           77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSS--RGSVVFTISNAGFY-------  147 (281)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCGGGTS-------
T ss_pred             cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhc--CCeEEEEecchhcc-------
Confidence            23679999999864211        111   122344454    4455666666554  35566665432111       


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                          + .+..-.++.+......+-+.+|..++  +. |++..+-
T Consensus       148 ----~-~~~~~~Y~asKaa~~~l~~~la~e~~--~~-Irvn~v~  183 (281)
T 3zv4_A          148 ----P-NGGGPLYTATKHAVVGLVRQMAFELA--PH-VRVNGVA  183 (281)
T ss_dssp             ----S-SSSCHHHHHHHHHHHHHHHHHHHHHT--TT-SEEEEEE
T ss_pred             ----C-CCCCchhHHHHHHHHHHHHHHHHHhc--CC-CEEEEEE
Confidence                1 22222233332223445677777775  34 7665553

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.65  E-value=0.028  Score=50.52  Aligned_cols=108  Identities=21%  Similarity=0.300  Sum_probs=64.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCc---ccccc-------C
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQ---LGQAL-------E   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d---~~~al-------~   95 (358)
                      +.++|.|+||+|++|..++..|+..+.  +|++.|++...      ....    +... .+-+|   +.+++       .
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~~----~~~~~~D~~d~~~~~~~~~~~~~~~g   73 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQYP----FATEVMDVADAAQVAQVCQRLLAETE   73 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCCS----SEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcCC----ceEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            446899999999999999999999987  89999987521      1100    1111 11111   22222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++..
T Consensus        74 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  134 (250)
T 2fwm_X           74 RLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVASD  134 (250)
T ss_dssp             CCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECch
Confidence            789999999874321   1222   234445543    4455555556554 4556666543

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=95.64  E-value=0.0033  Score=57.98  Aligned_cols=64  Identities=11%  Similarity=0.113  Sum_probs=36.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEE-EEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei-~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +|||+|||+ |.+|..++..|... +  +| .++|+++...  ..+.... .  . .   ..|+.+.++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~--~~~~~~~-g--~-~---~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRA--RNLAEVY-G--G-K---AATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHH--HHHHHHT-C--C-C---CCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHH--HHHHHHc-C--C-c---cCCHHHHHhcCCEEEEeC
Confidence            368999998 99999999887766 4  77 4899865221  1222111 1  1 1   234556788999999986

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=95.64  E-value=0.043  Score=53.99  Aligned_cols=93  Identities=16%  Similarity=0.138  Sum_probs=62.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...++|+|+|+ |.+|..++..+...+.  +|+.+|+++.. .++..  + .    .+.    .++.+++++||+||.+.
T Consensus       218 L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A~~--~-G----~~v----~~Leeal~~ADIVi~at  283 (435)
T 3gvp_A          218 FGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQACM--D-G----FRL----VKLNEVIRQVDIVITCT  283 (435)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHH--T-T----CEE----CCHHHHTTTCSEEEECS
T ss_pred             ecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHHHH--c-C----CEe----ccHHHHHhcCCEEEECC
Confidence            45679999998 9999999999987776  89999987522 12221  1 1    111    23578899999999975


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      |.+.--+                 .+.++...|++++++++.+..
T Consensus       284 gt~~lI~-----------------~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          284 GNKNVVT-----------------REHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             SCSCSBC-----------------HHHHHHSCTTEEEEECSSTTT
T ss_pred             CCcccCC-----------------HHHHHhcCCCcEEEEecCCCc
Confidence            4321111                 123344568899999988754

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=95.63  E-value=0.074  Score=48.47  Aligned_cols=36  Identities=25%  Similarity=0.428  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|++.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCh
Confidence            445799999999999999999999987  899999875

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.63  E-value=0.006  Score=55.91  Aligned_cols=149  Identities=9%  Similarity=0.131  Sum_probs=81.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---ccc-------ccC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LGQ-------ALE   95 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~~-------al~   95 (358)
                      .+.++|.|+||+|++|..++..|+..+.  +|++.|.++...     ....  ..+.  .+-+|   ..+       .+.
T Consensus        12 ~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~-----~~~~--~~~~--~Dv~~~~~v~~~~~~~~~~~g   80 (269)
T 3vtz_A           12 FTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSD-----VNVS--DHFK--IDVTNEEEVKEAVEKTTKKYG   80 (269)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--C-----TTSS--EEEE--CCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhc-----cCce--eEEE--ecCCCHHHHHHHHHHHHHHcC
Confidence            3456899999999999999999999987  899999876211     0000  0011  01111   112       234


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      ..|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++......           + .
T Consensus        81 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~~-----------~-~  147 (269)
T 3vtz_A           81 RIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIASVQSYA-----------A-T  147 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------B-C
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECchhhcc-----------C-C
Confidence            789999999974322   1222   233445543    4455555565544 46667666543211           1 2


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +..-.++.+......+-+.++..++  + .|++..+
T Consensus       148 ~~~~~Y~asKaa~~~l~~~la~e~~--~-~i~vn~v  180 (269)
T 3vtz_A          148 KNAAAYVTSKHALLGLTRSVAIDYA--P-KIRCNAV  180 (269)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--T-TEEEEEE
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHhc--C-CCEEEEE
Confidence            2222333332223455666777764  3 4655444

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.62  E-value=0.026  Score=52.36  Aligned_cols=36  Identities=17%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      -+.++|.|+|+ |.+|...+..|...+.  +|+++|.+.
T Consensus        11 l~~k~VLVVGg-G~va~rka~~Ll~~Ga--~VtViap~~   46 (274)
T 1kyq_A           11 LKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPDL   46 (274)
T ss_dssp             CTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEEE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHhCCC--EEEEEcCCC
Confidence            35679999998 9999999999998886  899999754

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=95.61  E-value=0.0096  Score=53.39  Aligned_cols=108  Identities=14%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cC---Ccccccc-----C
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GN---DQLGQAL-----E   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al-----~   95 (358)
                      +++++.|+||+|++|..++..|+. .+.  .|++.|.++. ...           .+.... +-   ++..+.+     .
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~~~~~   69 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAE-----------NLKFIKADLTKQQDITNVLDIIKNV   69 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCT-----------TEEEEECCTTCHHHHHHHHHHTTTC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccc-----------cceEEecCcCCHHHHHHHHHHHHhC
Confidence            456799999999999999999988 565  7888988652 110           111110 00   1111222     2


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                      ..|++|..||.....   ..+.   ...+..|+.-...+.+.+.++- ..+.||+++..
T Consensus        70 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~  128 (244)
T 4e4y_A           70 SFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSD  128 (244)
T ss_dssp             CEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCG
T ss_pred             CCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCH
Confidence            789999999974321   2232   3456677766666666665543 23566666543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.61  E-value=0.026  Score=54.15  Aligned_cols=67  Identities=25%  Similarity=0.394  Sum_probs=48.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .-..++|+|||. |.||+.++..+...+.  +|+.||.........++.       +..   ..++.+.+++||+|++..
T Consensus       165 ~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  231 (347)
T 1mx3_A          165 RIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHC  231 (347)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcC
Confidence            345679999997 9999999999987775  899999865322222221       121   124567889999999975

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=95.57  E-value=0.15  Score=46.28  Aligned_cols=151  Identities=14%  Similarity=0.143  Sum_probs=82.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---ccccc-------CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQAL-------ED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al-------~~   96 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|++...  ..++...    .+.... +-+|   ..+++       ..
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~--~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVER--LKALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHH--HHTTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHhhcC----CceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            35789999999999999999999987  89999986421  1111111    222221 1122   12222       37


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      .|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.-...           .+ .+
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS~~~~-----------~~-~~  154 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISSIAGK-----------KT-FP  154 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------SC-CT
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcChhhC-----------CC-CC
Confidence            89999999974321   2222   234555544    4455666666554 4566666543321           11 23


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+......+-+.++..++  +..|++..+
T Consensus       155 ~~~~Y~asK~a~~~~~~~la~e~~--~~gi~vn~v  187 (266)
T 3p19_A          155 DHAAYCGTKFAVHAISENVREEVA--ASNVRVMTI  187 (266)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhc--ccCcEEEEE
Confidence            333333332223345566666653  455665544

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.56  E-value=0.015  Score=56.85  Aligned_cols=104  Identities=21%  Similarity=0.323  Sum_probs=63.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCcc---------EEEEec----------
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSE---------VAGYMG----------   86 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~---------v~~~~~----------   86 (358)
                      ++.||+|||+ |.+|...+..+...+.  +|..+|++.. ...+.++........         ...+..          
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            5679999998 9999999998887776  8999999873 333444321100000         001110          


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ..++.+++++||+||.++..|.+....   ++  +    +   +.++...|.++|+.++
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~---Lv--t----~---emv~~Mk~GsVIVDvA  312 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPR---LV--T----R---EMLDSMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCC---CB--C----H---HHHTTSCTTCEEEETT
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCE---Ee--c----H---HHHhcCCCCCEEEEEe
Confidence            124567889999999998766422110   00  0    1   3444456888877665

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.49  E-value=0.0036  Score=57.35  Aligned_cols=114  Identities=21%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHH-----HHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGV-----AADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~-----~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.+++.|+||+|++|..++..|+..+.  +|++.|++.....     ..|+.+..   .+...  .....+.+...|++|
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEE
Confidence            345789999999999999999999987  8999998652100     00111100   00000  000112335789999


Q ss_pred             EcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          102 IPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       102 i~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..||.....   ..+.   ...+..|+    .+.+.+.+.+++.. .+.||+++...
T Consensus       100 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~  155 (266)
T 3uxy_A          100 NNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASCW  155 (266)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSB
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHH
Confidence            999975321   1222   23344554    44555555556554 56677776544

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=95.46  E-value=0.11  Score=50.29  Aligned_cols=120  Identities=18%  Similarity=0.240  Sum_probs=74.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC----C-cH-----HHHHHhhcCCCCccEEEEecCCcccc
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA----N-TP-----GVAADVGHINTRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~----~-~~-----~~~~dl~~~~~~~~v~~~~~~~d~~~   92 (358)
                      .++.+..||.|+|| |.+|..++..|...|. .+|+++|++    . ..     .....+.+.. ..    .....++.+
T Consensus       187 g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~~----~~~~~~L~e  259 (388)
T 1vl6_A          187 EKKIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-NP----ERLSGDLET  259 (388)
T ss_dssp             TCCTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-CT----TCCCSCHHH
T ss_pred             CCCCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhh-hc----cCchhhHHH
Confidence            33556789999998 9999999988887773 689999997    2 11     1112222211 11    111356889


Q ss_pred             ccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           93 ALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      ++++||++|-+.+ |   +.       -+    +++.+.|   +++.+|+=.+||.--.++-  ++++ .|    ..+++
T Consensus       260 av~~ADVlIG~Sa-p---~l-------~t----~emVk~M---a~~pIIfalSNPt~E~~p~--~a~~-~g----~~i~a  314 (388)
T 1vl6_A          260 ALEGADFFIGVSR-G---NI-------LK----PEWIKKM---SRKPVIFALANPVPEIDPE--LARE-AG----AFIVA  314 (388)
T ss_dssp             HHTTCSEEEECSC-S---SC-------SC----HHHHTTS---CSSCEEEECCSSSCSSCHH--HHHH-TT----CSEEE
T ss_pred             HHccCCEEEEeCC-C---Cc-------cC----HHHHHhc---CCCCEEEEcCCCCCCCCHH--HHHH-hc----CeEEE
Confidence            9999999888754 3   32       11    1222222   3577888889997544432  2233 34    47888


Q ss_pred             ec
Q 018314          173 VT  174 (358)
Q Consensus       173 ~t  174 (358)
                      +.
T Consensus       315 tG  316 (388)
T 1vl6_A          315 TG  316 (388)
T ss_dssp             ES
T ss_pred             eC
Confidence            75

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.46  E-value=0.032  Score=53.89  Aligned_cols=95  Identities=16%  Similarity=0.281  Sum_probs=60.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ..-..++|+|||. |.+|..+|..+...+.  +|..||.........+.   .    +..    .++.+.++.||+|++.
T Consensus       172 ~~l~gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~  237 (365)
T 4hy3_A          172 RLIAGSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VEP----ASLEDVLTKSDFIFVV  237 (365)
T ss_dssp             CCSSSSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CEE----CCHHHHHHSCSEEEEC
T ss_pred             cccCCCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----eee----CCHHHHHhcCCEEEEc
Confidence            3455779999997 9999999998875555  99999987533222221   1    121    2467889999999997


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      .  |..+. ++. ++  |       .+.+....|++++|+++
T Consensus       238 ~--Plt~~-T~~-li--~-------~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          238 A--AVTSE-NKR-FL--G-------AEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             S--CSSCC-----CC--C-------HHHHHTSCTTCEEEECS
T ss_pred             C--cCCHH-HHh-hc--C-------HHHHhcCCCCcEEEECc
Confidence            5  22111 110 01  1       12355566889988875

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.46  E-value=0.12  Score=48.42  Aligned_cols=154  Identities=16%  Similarity=0.222  Sum_probs=84.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC---------C--cHHHHHHhhcCCCCccEEEEecCCccc---c
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA---------N--TPGVAADVGHINTRSEVAGYMGNDQLG---Q   92 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~---------~--~~~~~~dl~~~~~~~~v~~~~~~~d~~---~   92 (358)
                      +.+.+.|+||+|++|..++..|+..+.  +|++.|..         .  ......++.....  .+..  +..|..   +
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga--~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~--~~~~--D~~~~~~~~~   81 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVA--NYDSVEAGEK   81 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEE--ECCCGGGHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCcccccccCCHHHHHHHHHHHHhhCC--eEEE--eCCCHHHHHH
Confidence            445899999999999999999999987  89998863         2  1222334432221  1111  112211   1


Q ss_pred             -------ccCCCCEEEEcCCCCCCC---CCCH---HHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHH
Q 018314           93 -------ALEDSDVVIIPAGVPRKP---GMTR---DDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (358)
Q Consensus        93 -------al~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~  155 (358)
                             .+...|++|..||.....   ..+.   ...+..|..-    .+.+.+.+++.. .+.||+++....      
T Consensus        82 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~grIV~vsS~~~------  154 (319)
T 1gz6_A           82 LVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG------  154 (319)
T ss_dssp             HHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH------
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECChhh------
Confidence                   234789999999975432   2232   2344555444    455555555544 456676654321      


Q ss_pred             HHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       156 ~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                           ..| .+....++.+......+-+.+++.+  .+..|++..+
T Consensus       155 -----~~~-~~~~~~Y~aSK~a~~~~~~~la~el--~~~gI~vn~v  192 (319)
T 1gz6_A          155 -----IYG-NFGQANYSAAKLGLLGLANTLVIEG--RKNNIHCNTI  192 (319)
T ss_dssp             -----HHC-CTTCHHHHHHHHHHHHHHHHHHHHT--GGGTEEEEEE
T ss_pred             -----ccC-CCCCHHHHHHHHHHHHHHHHHHHHh--cccCEEEEEE
Confidence                 112 2322333333333344556667665  3455665555

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=95.43  E-value=0.018  Score=55.67  Aligned_cols=77  Identities=25%  Similarity=0.212  Sum_probs=51.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .++.+|+|+|+ |.+|..++..+...+.  +|+.+|++... ..+.+..  .....+. .....++.+.++++|+||.++
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga--~V~~~d~~~~~l~~~~~~~--g~~~~~~-~~~~~~l~~~l~~aDvVi~~~  239 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGA--TVTVLDINIDKLRQLDAEF--CGRIHTR-YSSAYELEGAVKRADLVIGAV  239 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHT--TTSSEEE-ECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhc--CCeeEec-cCCHHHHHHHHcCCCEEEECC
Confidence            45679999998 9999999999988886  89999987522 2222211  1111111 111234567788999999998


Q ss_pred             CCCC
Q 018314          105 GVPR  108 (358)
Q Consensus       105 g~~~  108 (358)
                      +.|.
T Consensus       240 ~~p~  243 (377)
T 2vhw_A          240 LVPG  243 (377)
T ss_dssp             CCTT
T ss_pred             CcCC
Confidence            8765

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=95.39  E-value=0.029  Score=46.80  Aligned_cols=63  Identities=17%  Similarity=0.179  Sum_probs=40.3

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.+|+|||++   |.+|..++..|...++  +|+-+|.... +.  ++   .   .+..+   .++.+...++|+|+++.
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~--~v~~vnp~~~-g~--~i---~---G~~~~---~sl~el~~~~Dlvii~v   78 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGY--HVIPVSPKVA-GK--TL---L---GQQGY---ATLADVPEKVDMVDVFR   78 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTC--CEEEECSSST-TS--EE---T---TEECC---SSTTTCSSCCSEEECCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCC--EEEEeCCccc-cc--cc---C---Ceecc---CCHHHcCCCCCEEEEEe
Confidence            4589999986   6899999998888887  5555554321 00  01   1   23332   23444456899999984

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.38  E-value=0.051  Score=54.30  Aligned_cols=116  Identities=15%  Similarity=0.156  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-----HHHHHHhhcCCCCccEEEEe-cCCc---cccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----PGVAADVGHINTRSEVAGYM-GNDQ---LGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~~a   97 (358)
                      +..+|.|+||+|++|..++..|+..+. ..|++.+.+..     .....++....  .++.... +-+|   +.+.++..
T Consensus       225 ~~~~vLITGgtGgIG~~la~~La~~G~-~~vvl~~R~~~~~~~~~~l~~~l~~~g--~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          225 PTGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCC-CEEEEEcCCCCCcHHHHHHHHHHHhcC--CEEEEEEeCCCCHHHHHHHHHHH
Confidence            456899999999999999999988774 35999998642     22333444322  2444432 1122   23344444


Q ss_pred             ------CEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           98 ------DVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        98 ------DiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                            |.||++||.....   ..+.   ...+.-|+.-...+.+.+.+... ..+|++|.
T Consensus       302 ~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~-~~~V~~SS  361 (486)
T 2fr1_A          302 GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDL-TAFVLFSS  361 (486)
T ss_dssp             CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCC-SEEEEEEE
T ss_pred             HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCC-CEEEEEcC
Confidence                  9999999975422   2232   23455678877888877766533 44555553

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.38  E-value=0.02  Score=54.31  Aligned_cols=68  Identities=22%  Similarity=0.302  Sum_probs=48.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ..-..++|+|||. |.+|+.++..+...+.  +|+.||++.. .....   ..    .+..   . ++.+.+++||+|++
T Consensus       151 ~~l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~---~~----g~~~---~-~l~e~l~~aDvVi~  216 (330)
T 2gcg_A          151 YGLTQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEEAA---EF----QAEF---V-STPELAAQSDFIVV  216 (330)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHHHH---TT----TCEE---C-CHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhHHH---hc----Ccee---C-CHHHHHhhCCEEEE
Confidence            3455679999998 9999999999987776  8999998652 22221   11    1222   1 45677899999999


Q ss_pred             cCC
Q 018314          103 PAG  105 (358)
Q Consensus       103 ~ag  105 (358)
                      +..
T Consensus       217 ~vp  219 (330)
T 2gcg_A          217 ACS  219 (330)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            863

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=95.35  E-value=0.067  Score=48.57  Aligned_cols=115  Identities=13%  Similarity=0.098  Sum_probs=67.4

Q ss_pred             CceEEEEcC--CCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc---cccccC------
Q 018314           28 DRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ---LGQALE------   95 (358)
Q Consensus        28 ~~KI~IiGA--~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d---~~~al~------   95 (358)
                      .+++.|+||  +|++|..++..|+..+.  +|++.|++.... ..++.+.. ..++.... +-+|   ..+.++      
T Consensus         7 ~k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            7 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI   82 (269)
T ss_dssp             TCEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHh
Confidence            357999998  89999999999999986  899999876221 11121111 01111111 1122   222222      


Q ss_pred             ----CCCEEEEcCCCCCC------C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           96 ----DSDVVIIPAGVPRK------P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        96 ----~aDiVIi~ag~~~~------~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                          ..|++|..||....      +  ..+.   ...+..|+.-...+.+.+.++- +.+.||+++.
T Consensus        83 g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss  149 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDF  149 (269)
T ss_dssp             CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcC
Confidence                78999999986531      1  2232   2345667766666666665442 2466776653

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=95.31  E-value=0.3  Score=44.52  Aligned_cols=155  Identities=14%  Similarity=0.106  Sum_probs=87.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      +.+.+.|+||++.+|..++..|+..+.  .+++.|+++. ......+.....  +...+. +-+|          ..+.+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga--~Vv~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~   81 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA--IPVVFARHAPDGAFLDALAQRQP--RATYLPVELQDDAQCRDAVAQTIATF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCCHHHHHHHHHHCT--TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCcccHHHHHHHHhcCC--CEEEEEeecCCHHHHHHHHHHHHHHh
Confidence            455788899999999999999999987  8999998762 222222322211  111111 1111          12335


Q ss_pred             CCCCEEEEcCCCCCCC--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           95 EDSDVVIIPAGVPRKP--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      ..-|++|..||.....  +.+..+   .+..|    .-..+...+.+++.  .+.||+++.-..           ..| .
T Consensus        82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~~~-----------~~~-~  147 (258)
T 4gkb_A           82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT--RGAIVNISSKTA-----------VTG-Q  147 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCTHH-----------HHC-C
T ss_pred             CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc--CCeEEEEeehhh-----------ccC-C
Confidence            6789999999975433  333332   23344    34557777777654  366777754331           122 3


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      |..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       148 ~~~~~Y~asKaav~~ltr~lA~ela--~~gIrVN~V  181 (258)
T 4gkb_A          148 GNTSGYCASKGAQLALTREWAVALR--EHGVRVNAV  181 (258)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEE
Confidence            3322233322222345677777763  666765554

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.31  E-value=0.075  Score=53.08  Aligned_cols=127  Identities=15%  Similarity=0.280  Sum_probs=73.2

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +.+||.|||. |..|.+ +|..|...|.  +|...|..... ....|....    +..+.+. + .+.+++||.||...+
T Consensus        18 ~~~~v~viGi-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~g~-~-~~~~~~a~~vv~s~~   87 (491)
T 2f00_A           18 RVRHIHFVGI-GGAGMGGIAEVLANEGY--QISGSDLAPNP-VTQQLMNLG----ATIYFNH-R-PENVRDASVVVVSSA   87 (491)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTT----CEEESSC-C-GGGGTTCSEEEECTT
T ss_pred             cCCEEEEEEc-CHHHHHHHHHHHHhCCC--eEEEECCCCCH-HHHHHHHCC----CEEECCC-C-HHHcCCCCEEEECCC
Confidence            4568999998 999987 8888888887  99999987632 222344322    3333232 2 356789999999987


Q ss_pred             CCCCCCCCHHHHH-HHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCC
Q 018314          106 VPRKPGMTRDDLF-NINAGIVKDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNE  167 (358)
Q Consensus       106 ~~~~~g~~r~~~~-~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~  167 (358)
                      .|....  ....+ ..+++++... +.+.+...+..+|-+|=.++  .++.+++++++..| ++|
T Consensus        88 i~~~~p--~~~~a~~~~ipvl~~~-~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G-~~p  148 (491)
T 2f00_A           88 ISADNP--EIVAAHEARIPVIRRA-EMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAG-LDP  148 (491)
T ss_dssp             CCTTCH--HHHHHHHTTCCEEEHH-HHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTT-CCC
T ss_pred             CCCCCH--HHHHHHHcCCcEEEHH-HHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC-CCC
Confidence            764211  01001 1122221111 11111111224555555554  77788888888887 654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=95.29  E-value=0.035  Score=53.14  Aligned_cols=68  Identities=21%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHH-hCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMK-LNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~-~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      .+-..++|+|||. |.||+.++..+. ..+.  +|+.||++. ......++.       +..   .+++.+.+++||+|+
T Consensus       159 ~~l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVi  225 (348)
T 2w2k_A          159 HNPRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKALG-------AER---VDSLEELARRSDCVS  225 (348)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEE
T ss_pred             cCCCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhcC-------cEE---eCCHHHHhccCCEEE
Confidence            3455679999997 999999999998 7776  899999875 222222221       222   134567789999999


Q ss_pred             EcC
Q 018314          102 IPA  104 (358)
Q Consensus       102 i~a  104 (358)
                      ++.
T Consensus       226 l~v  228 (348)
T 2w2k_A          226 VSV  228 (348)
T ss_dssp             ECC
T ss_pred             EeC
Confidence            986

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=95.24  E-value=0.021  Score=54.95  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=50.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~  103 (358)
                      .++++|+|+|+ |.+|..++..+...+.  +|+.+|+++.. ..+.+.  ...  .+... ....++.+.++++|+||.+
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga--~V~~~d~~~~~~~~~~~~--~g~--~~~~~~~~~~~l~~~~~~~DvVi~~  236 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGA--QVTILDVNHKRLQYLDDV--FGG--RVITLTATEANIKKSVQHADLLIGA  236 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHH--TTT--SEEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHh--cCc--eEEEecCCHHHHHHHHhCCCEEEEC
Confidence            34579999998 9999999999998886  89999987522 122221  111  22211 1123556778899999999


Q ss_pred             CCCC
Q 018314          104 AGVP  107 (358)
Q Consensus       104 ag~~  107 (358)
                      ++.+
T Consensus       237 ~g~~  240 (369)
T 2eez_A          237 VLVP  240 (369)
T ss_dssp             CC--
T ss_pred             CCCC
Confidence            8765

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=95.20  E-value=0.063  Score=51.79  Aligned_cols=98  Identities=14%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             CceEEEEcCCCChHHHHHH-HHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLAL-LMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~-~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||+|+||+|.+|..+.. .|...++ ..+|+++..+. .|..  +.+... ..+.... ..|. +.++++|+||.+.|
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~--v~~~~g-~~i~~~~-~~~~-~~~~~~DvVf~a~g   74 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQA--APSFGG-TTGTLQD-AFDL-EALKALDIIVTCQG   74 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSB--CCGGGT-CCCBCEE-TTCH-HHHHTCSEEEECSC
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCC--ccccCC-CceEEEe-cCCh-HHhcCCCEEEECCC
Confidence            4699999999999999998 5655553 46888887653 3331  111110 1222211 2232 34689999999865


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                                      ....+++++...+.+-+.  +++.||.+
T Consensus        75 ----------------~~~s~~~a~~~~~~G~k~--vVID~ss~  100 (367)
T 1t4b_A           75 ----------------GDYTNEIYPKLRESGWQG--YWIDAASS  100 (367)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCC--EEEECSST
T ss_pred             ----------------chhHHHHHHHHHHCCCCE--EEEcCChh
Confidence                            344456666666554333  45777764

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=95.19  E-value=0.024  Score=53.01  Aligned_cols=75  Identities=13%  Similarity=0.196  Sum_probs=50.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.++|.|+|+ |.+|..++..|...+. .+|+++|++..  ...+.++... .. .+..   .+++.+++.++|+||.+.
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~~-~~-~~~~---~~~~~~~~~~aDivIn~t  212 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDER-RS-AYFS---LAEAETRLAEYDIIINTT  212 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCSS-SC-CEEC---HHHHHHTGGGCSEEEECS
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhhc-cC-ceee---HHHHHhhhccCCEEEECC
Confidence            4568999998 9999999999998773 48999998752  2333333211 00 1111   124556789999999987


Q ss_pred             CCCC
Q 018314          105 GVPR  108 (358)
Q Consensus       105 g~~~  108 (358)
                      +.+.
T Consensus       213 ~~~~  216 (297)
T 2egg_A          213 SVGM  216 (297)
T ss_dssp             CTTC
T ss_pred             CCCC
Confidence            6544

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.19  E-value=0.016  Score=51.13  Aligned_cols=144  Identities=14%  Similarity=0.117  Sum_probs=82.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +.+++.|+||+|++|..++..|+..+.  .|++.|.+..    .|+.+..   .++      ...+.+...|++|..||.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v~------~~~~~~g~id~lv~nAg~   69 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SVY------HYFETIGAFDHLIVTAGS   69 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HHH------HHHHHHCSEEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HHH------HHHHHhCCCCEEEECCCC
Confidence            345789999999999999999998886  8999987542    2232211   011      011234578999999986


Q ss_pred             CCC--C--CCCH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccccH
Q 018314          107 PRK--P--GMTR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTLDV  178 (358)
Q Consensus       107 ~~~--~--g~~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~lds  178 (358)
                      ...  +  ..+.   ...+..|+.-...+.+.+.++- +.+.|++++.....           .+ .+..-.++.+....
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~-----------~~-~~~~~~Y~asK~a~  137 (223)
T 3uce_A           70 YAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSR-----------KV-VANTYVKAAINAAI  137 (223)
T ss_dssp             CCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGT-----------SC-CTTCHHHHHHHHHH
T ss_pred             CCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhc-----------cC-CCCchHHHHHHHHH
Confidence            421  1  2232   3346677776666666665553 34567766543211           11 22222333332223


Q ss_pred             HHHHHHHHHHcCCCCCCCceEEE
Q 018314          179 VRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       179 ~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..+-+.+++.++  +  |++..+
T Consensus       138 ~~~~~~la~e~~--~--i~vn~v  156 (223)
T 3uce_A          138 EATTKVLAKELA--P--IRVNAI  156 (223)
T ss_dssp             HHHHHHHHHHHT--T--SEEEEE
T ss_pred             HHHHHHHHHhhc--C--cEEEEE
Confidence            445666777765  2  665555

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=95.19  E-value=0.21  Score=41.33  Aligned_cols=107  Identities=11%  Similarity=0.067  Sum_probs=63.5

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.+|+||||+   |.+|..++..|...++  +  +|++++..   .++   .   .+..+   .++.+.-...|+++++.
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~--~--v~~Vnp~~---~~i---~---G~~~y---~sl~~l~~~vDlvvi~v   85 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGY--D--VYPVNPKY---EEV---L---GRKCY---PSVLDIPDKIEVVDLFV   85 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTC---SEE---T---TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCC--E--EEEECCCC---CeE---C---Ceecc---CCHHHcCCCCCEEEEEe
Confidence            5689999986   6899999999988887  5  56655421   011   1   23333   23444446799999984


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-c
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T  174 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t  174 (358)
                        |              .+.+.++++.+.+.+.+++++  . |-..-..+ .+..+..|    -+++|= |
T Consensus        86 --p--------------~~~~~~vv~~~~~~gi~~i~~--~-~g~~~~~l-~~~a~~~G----i~vvGpnc  132 (144)
T 2d59_A           86 --K--------------PKLTMEYVEQAIKKGAKVVWF--Q-YNTYNREA-SKKADEAG----LIIVANRC  132 (144)
T ss_dssp             --C--------------HHHHHHHHHHHHHHTCSEEEE--C-TTCCCHHH-HHHHHHTT----CEEEESCC
T ss_pred             --C--------------HHHHHHHHHHHHHcCCCEEEE--C-CCchHHHH-HHHHHHcC----CEEEcCCc
Confidence              1              255566666666667666433  2 22122222 22345555    478886 6

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.17  E-value=0.043  Score=51.85  Aligned_cols=68  Identities=22%  Similarity=0.296  Sum_probs=49.3

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ..-..++|+|||. |.||..++..+...+.  +|+.||. +.....+.++.       +..   .+++.+.+++||+|++
T Consensus       142 ~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvVil  208 (320)
T 1gdh_A          142 EKLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-------ATF---HDSLDSLLSVSQFFSL  208 (320)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-------cEE---cCCHHHHHhhCCEEEE
Confidence            3456779999997 9999999999987665  9999998 76332222221       122   1246678899999999


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      ..
T Consensus       209 ~~  210 (320)
T 1gdh_A          209 NA  210 (320)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=95.17  E-value=0.085  Score=47.54  Aligned_cols=115  Identities=19%  Similarity=0.163  Sum_probs=65.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCcc---ccc--------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQL---GQA--------   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d~---~~a--------   93 (358)
                      .+++.|+||+|++|..++..|+..+.  +|++.|+++.  .....++....  .++..+. +-+|.   .+.        
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999986  8999998752  22233333211  1233221 11221   111        


Q ss_pred             cCCCCEEEEcCC--CC------CCC--CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 LEDSDVVIIPAG--VP------RKP--GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 l~~aDiVIi~ag--~~------~~~--g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +..-|++|..||  ..      ..+  ..+.   ...+..|    ....+...+.+.+.. .+.||+++..
T Consensus        81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS~  150 (260)
T 2qq5_A           81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG-QGLIVVISSP  150 (260)
T ss_dssp             TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT-CCEEEEECCG
T ss_pred             CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC-CcEEEEEcCh
Confidence            345699999994  21      111  1221   2233333    344466666665544 4567767654

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.17  E-value=0.024  Score=54.97  Aligned_cols=106  Identities=24%  Similarity=0.269  Sum_probs=63.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCcc-----EEEEe----------cCCcc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSE-----VAGYM----------GNDQL   90 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~-----v~~~~----------~~~d~   90 (358)
                      ++.||+|||+ |.+|...+..+...+.  +|..+|++. ....+.++.-......     ...+.          ...++
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence            5679999998 9999999988887775  899999986 3333444321000000     00010          01245


Q ss_pred             ccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           91 GQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      .+.+++||+||.++..|.+....   ++      .+   +.++...|.++|+.++-+
T Consensus       260 ~e~l~~aDIVI~tv~iPg~~ap~---Lv------t~---emv~~MkpGsVIVDvA~d  304 (381)
T 3p2y_A          260 EDAITKFDIVITTALVPGRPAPR---LV------TA---AAATGMQPGSVVVDLAGE  304 (381)
T ss_dssp             HHHHTTCSEEEECCCCTTSCCCC---CB------CH---HHHHTSCTTCEEEETTGG
T ss_pred             HHHHhcCCEEEECCCCCCcccce---ee------cH---HHHhcCCCCcEEEEEeCC
Confidence            67899999999988666422110   00      11   334444578888766533

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=95.16  E-value=0.09  Score=47.39  Aligned_cols=117  Identities=13%  Similarity=0.116  Sum_probs=67.5

Q ss_pred             CCceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEe-cCCc---cccc----
Q 018314           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYM-GNDQ---LGQA----   93 (358)
Q Consensus        27 ~~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~-~~~d---~~~a----   93 (358)
                      +.+++.|+||+  |++|..++..|+..+.  .+++.|.+..   .....++.... ..++..+. +-+|   ..+.    
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~   95 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGA--AVAITYASRAQGAEENVKELEKTY-GIKAKAYKCQVDSYESCEKLVKDV   95 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSC--EEEECBSSSSSHHHHHHHHHHHHH-CCCEECCBCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCC--eEEEEeCCcchhHHHHHHHHHHhc-CCceeEEecCCCCHHHHHHHHHHH
Confidence            45689999998  7999999999999987  8999987652   33333443211 11222211 1111   1222    


Q ss_pred             ---cCCCCEEEEcCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           94 ---LEDSDVVIIPAGVPRKP---GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        94 ---l~~aDiVIi~ag~~~~~---g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                         +...|++|..||.....   ..+.   ...+..|+    .+.+.+.+.+.+.. .+.+|+++..
T Consensus        96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS~  161 (267)
T 3gdg_A           96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG-TGSLVITASM  161 (267)
T ss_dssp             HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCG
T ss_pred             HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC-CceEEEEccc
Confidence               23669999999875322   2222   23445554    44555666666654 4456656543

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.15  E-value=0.055  Score=51.81  Aligned_cols=33  Identities=27%  Similarity=0.466  Sum_probs=26.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALY   60 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~   60 (358)
                      +++||+|+||+|.+|..++..|...+. .||+.+
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~-~elvai   35 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPY-LELVKV   35 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSS-EEEEEE
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCC-cEEEEE
Confidence            457999999889999999988877654 367666

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=95.14  E-value=0.034  Score=51.47  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcC---CCCccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHI---NTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~---~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.+++.|+|| |.+|..++..|+..+   +|+++|++.  .+..+.++...   .....+...    ++.+.+.++|+||
T Consensus       127 ~~k~vlV~Ga-GgiG~aia~~L~~~G---~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~----~~~~~~~~~DilV  198 (287)
T 1nvt_A          127 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS----GLDVDLDGVDIII  198 (287)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE----CTTCCCTTCCEEE
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCC---CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe----eHHHhhCCCCEEE
Confidence            3458999998 899999999999887   899999875  22333333321   000123321    2346789999999


Q ss_pred             EcCCCCCC
Q 018314          102 IPAGVPRK  109 (358)
Q Consensus       102 i~ag~~~~  109 (358)
                      .++|....
T Consensus       199 n~ag~~~~  206 (287)
T 1nvt_A          199 NATPIGMY  206 (287)
T ss_dssp             ECSCTTCT
T ss_pred             ECCCCCCC
Confidence            99886543

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.14  E-value=0.032  Score=53.00  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi  102 (358)
                      .+++||+|||+ |.+|...+..+...+...+|+ ++|+++....  .+.+..   .+..+   +|+++.++  ++|+|++
T Consensus        11 ~~~~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~--~~~~~~---~~~~~---~~~~~ll~~~~~D~V~i   81 (354)
T 3q2i_A           11 DRKIRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPAALK--AAVERT---GARGH---ASLTDMLAQTDADIVIL   81 (354)
T ss_dssp             SSCEEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHHHHH--HHHHHH---CCEEE---SCHHHHHHHCCCSEEEE
T ss_pred             CCcceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHH--HHHHHc---CCcee---CCHHHHhcCCCCCEEEE
Confidence            46789999998 999999988888762222554 8898752221  111111   13333   45566665  8999999


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      +.
T Consensus        82 ~t   83 (354)
T 3q2i_A           82 TT   83 (354)
T ss_dssp             CS
T ss_pred             CC
Confidence            74

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=95.13  E-value=0.061  Score=52.21  Aligned_cols=74  Identities=24%  Similarity=0.314  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHH-HHhhcC----C-----CCccEEEEecCCccccccC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVA-ADVGHI----N-----TRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~-~dl~~~----~-----~~~~v~~~~~~~d~~~al~   95 (358)
                      +++||+|+||+|.+|..+...|...+.+ ||. |+......|+. .|....    .     ....++.    .+..+.++
T Consensus        18 ~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~----~~~~~~~~   92 (381)
T 3hsk_A           18 SVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE----CKPEGNFL   92 (381)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE----SSSCTTGG
T ss_pred             CccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe----Cchhhhcc
Confidence            4579999999999999999988887744 775 44433322221 122100    0     0112222    12122578


Q ss_pred             CCCEEEEcCC
Q 018314           96 DSDVVIIPAG  105 (358)
Q Consensus        96 ~aDiVIi~ag  105 (358)
                      ++|+||++.+
T Consensus        93 ~~Dvvf~alp  102 (381)
T 3hsk_A           93 ECDVVFSGLD  102 (381)
T ss_dssp             GCSEEEECCC
T ss_pred             cCCEEEECCC
Confidence            9999999863

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.11  E-value=0.043  Score=51.69  Aligned_cols=68  Identities=21%  Similarity=0.415  Sum_probs=49.5

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      ...-..++|+|||. |.+|+.++..+...+.  +|+.||++.....+.++   .    +..    .++.+.+++||+|++
T Consensus       137 ~~~l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvVvl  202 (313)
T 2ekl_A          137 GLELAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI---N----AKA----VSLEELLKNSDVISL  202 (313)
T ss_dssp             CCCCTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEE
T ss_pred             CCCCCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc---C----cee----cCHHHHHhhCCEEEE
Confidence            34456779999997 9999999999987776  89999987643222211   1    121    135678899999999


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      +.
T Consensus       203 ~~  204 (313)
T 2ekl_A          203 HV  204 (313)
T ss_dssp             CC
T ss_pred             ec
Confidence            85

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=95.11  E-value=0.021  Score=55.49  Aligned_cols=127  Identities=20%  Similarity=0.301  Sum_probs=74.9

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c-HHHHHHhhcCC--CCccEEEEecCCccccccCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T-PGVAADVGHIN--TRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~-~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~   96 (358)
                      ...++.+..||+|+|| |..|..++..+...|. .+|+++|.+. . .+...+|.+..  +..+........++.+++++
T Consensus       181 l~g~~l~d~kVVi~GA-GaAG~~iA~ll~~~Ga-~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~  258 (398)
T 2a9f_A          181 LLKKSLDEVSIVVNGG-GSAGLSITRKLLAAGA-TKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEG  258 (398)
T ss_dssp             TTTCCTTSCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHT
T ss_pred             HhCCCCCccEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhcc
Confidence            4455667789999998 9999999988877664 6999999863 1 11000222211  00000000113468899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ||++|=+.+    +|.-       +    +++.+   ..+++++|+-.+||.--.++-  ++++ .|    ..++++.
T Consensus       259 ADV~IG~Sa----pgl~-------T----~EmVk---~Ma~~pIIfalsNPt~E~~pe--~a~~-~g----~~i~atG  311 (398)
T 2a9f_A          259 ADIFIGVSA----PGVL-------K----AEWIS---KMAARPVIFAMANPIPEIYPD--EALE-AG----AYIVGTG  311 (398)
T ss_dssp             TCSEEECCS----TTCC-------C----HHHHH---TSCSSCEEEECCSSSCSSCHH--HHHT-TT----CSEEEES
T ss_pred             CCEEEecCC----CCCC-------C----HHHHH---hhCCCCEEEECCCCCccCCHH--HHHH-hC----CeEEEeC
Confidence            999877643    2321       1    22222   234789999999998544442  2222 23    4688775

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.10  E-value=0.078  Score=53.03  Aligned_cols=67  Identities=15%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC------CCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN------PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~------~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +||+|||. |.+|.+++..|...      ++  +++..+...  ....+.+..-.......      .++.+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~ta------~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGTL------GDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTCE------EEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCCC------CCHHHHHhcCCEE
Confidence            69999997 99999999999887      66  666555543  33333322211100001      2346889999999


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9985

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.10  E-value=0.044  Score=51.00  Aligned_cols=99  Identities=16%  Similarity=0.259  Sum_probs=63.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ...+.++|+|||+ |.+|..++..+...+.  +|..+|++.....  .+.+..  ...  .. ..++.+.+++||+||.+
T Consensus       153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~d~~~~~~~--~~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~  222 (300)
T 2rir_A          153 YTIHGSQVAVLGL-GRTGMTIARTFAALGA--NVKVGARSSAHLA--RITEMG--LVP--FH-TDELKEHVKDIDICINT  222 (300)
T ss_dssp             SCSTTSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHH--HHHHTT--CEE--EE-GGGHHHHSTTCSEEEEC
T ss_pred             CCCCCCEEEEEcc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCC--CeE--Ec-hhhHHHHhhCCCEEEEC
Confidence            3456779999998 9999999999988776  8999998652211  121111  121  11 23566788999999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee-CCCCc
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS-NPVNS  150 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t-NP~d~  150 (358)
                      ...    +.       -|.       ..++...|.+++|+++ .|.++
T Consensus       223 ~p~----~~-------i~~-------~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          223 IPS----MI-------LNQ-------TVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             CSS----CC-------BCH-------HHHTTSCTTCEEEECSSTTCSB
T ss_pred             CCh----hh-------hCH-------HHHHhCCCCCEEEEEeCCCCCc
Confidence            643    21       011       1234445788888875 56654

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.06  E-value=0.035  Score=50.63  Aligned_cols=65  Identities=22%  Similarity=0.361  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +. ||+|||+ |.+|..++..|...+.  +|.++|++..  ...+.++.     ..   +   +++.+. +++|+||.+.
T Consensus       116 ~~-~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~l~~~~~-----~~---~---~~~~~~-~~~Divi~~t  179 (263)
T 2d5c_A          116 KG-PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTPQRALALAEEFG-----LR---A---VPLEKA-REARLLVNAT  179 (263)
T ss_dssp             CS-CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHT-----CE---E---CCGGGG-GGCSEEEECS
T ss_pred             CC-eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhc-----cc---h---hhHhhc-cCCCEEEEcc
Confidence            45 8999998 9999999999998886  8999998652  22222221     11   2   244566 8999999987


Q ss_pred             CCC
Q 018314          105 GVP  107 (358)
Q Consensus       105 g~~  107 (358)
                      ..+
T Consensus       180 p~~  182 (263)
T 2d5c_A          180 RVG  182 (263)
T ss_dssp             STT
T ss_pred             CCC
Confidence            543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=95.04  E-value=0.075  Score=52.58  Aligned_cols=92  Identities=20%  Similarity=0.197  Sum_probs=61.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH-HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG-VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~-~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ...++|+|+|. |.||..+|..+...+.  +|+.+|+++... ++.  .+ .    .+.    .+++++++.||+|+.+.
T Consensus       245 L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A~--~~-G----~~v----v~LeElL~~ADIVv~at  310 (464)
T 3n58_A          245 MAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQAA--MD-G----FEV----VTLDDAASTADIVVTTT  310 (464)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHH--HT-T----CEE----CCHHHHGGGCSEEEECC
T ss_pred             ccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHHH--hc-C----cee----ccHHHHHhhCCEEEECC
Confidence            45679999998 9999999999887665  899999875221 221  11 1    121    23568899999999876


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      |.+   +.       -|       .+.+....|++++|+++...
T Consensus       311 gt~---~l-------I~-------~e~l~~MK~GAILINvGRgd  337 (464)
T 3n58_A          311 GNK---DV-------IT-------IDHMRKMKDMCIVGNIGHFD  337 (464)
T ss_dssp             SSS---SS-------BC-------HHHHHHSCTTEEEEECSSST
T ss_pred             CCc---cc-------cC-------HHHHhcCCCCeEEEEcCCCC
Confidence            432   11       00       23344456899999887764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=95.03  E-value=0.047  Score=51.29  Aligned_cols=67  Identities=27%  Similarity=0.343  Sum_probs=49.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .+-..++|+|||. |.+|..++..+...+.  +|+.||++.....+.++   .    +..    .++.+.+++||+|++.
T Consensus       138 ~~l~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~~----~~l~ell~~aDvV~l~  203 (307)
T 1wwk_A          138 IELEGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GKF----VDLETLLKESDVVTIH  203 (307)
T ss_dssp             CCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CEE----CCHHHHHHHCSEEEEC
T ss_pred             cccCCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----ccc----cCHHHHHhhCCEEEEe
Confidence            4456779999997 9999999999987775  89999987643222222   1    121    1356788999999998


Q ss_pred             C
Q 018314          104 A  104 (358)
Q Consensus       104 a  104 (358)
                      .
T Consensus       204 ~  204 (307)
T 1wwk_A          204 V  204 (307)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.00  E-value=0.079  Score=52.62  Aligned_cols=124  Identities=14%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +.+||.|||. |..|.+ +|..|...|.  +|...|..... ....|....    +..+.+. + .+.+++||.||...+
T Consensus        17 ~~~~i~viG~-G~sG~s~~A~~l~~~G~--~V~~~D~~~~~-~~~~l~~~g----i~~~~g~-~-~~~~~~a~~vv~s~~   86 (475)
T 1p3d_A           17 RVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADGV-VTQRLAQAG----AKIYIGH-A-EEHIEGASVVVVSSA   86 (475)
T ss_dssp             TCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCSH-HHHHHHHTT----CEEEESC-C-GGGGTTCSEEEECTT
T ss_pred             cCCEEEEEee-cHHHHHHHHHHHHhCCC--EEEEECCCCCH-HHHHHHhCC----CEEECCC-C-HHHcCCCCEEEECCC
Confidence            4568999998 999987 8888888887  89999987632 222344322    2233232 2 246789999999887


Q ss_pred             CCCCCCCCHHHHH-HHHHHHH---HHHHHHHHhhCCCeEEEEeeCCCC--cchHHHHHHHHHhCCCCC
Q 018314          106 VPRKPGMTRDDLF-NINAGIV---KDLCSAIAKYCPNAIVNMISNPVN--STVPIAAEVFKKAGTYNE  167 (358)
Q Consensus       106 ~~~~~g~~r~~~~-~~N~~i~---~~i~~~i~~~~p~a~iiv~tNP~d--~~t~~~~~~~~~sg~~~~  167 (358)
                      .|....  -...+ ..+++++   .-++..++    +..+|-+|=.++  .+|.+++++++..| ++|
T Consensus        87 i~~~~~--~~~~a~~~~i~vl~~~~~l~~~~~----~~~vI~VTGTnGKTTTt~ml~~iL~~~G-~~p  147 (475)
T 1p3d_A           87 IKDDNP--ELVTSKQKRIPVIQRAQMLAEIMR----FRHGIAVAGTHGKTTTTAMISMIYTQAK-LDP  147 (475)
T ss_dssp             SCTTCH--HHHHHHHTTCCEEEHHHHHHHHHH----TSEEEEEESSSCHHHHHHHHHHHHHHTT-CCC
T ss_pred             CCCCCH--HHHHHHHcCCcEEEHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHHhCC-CCC
Confidence            764211  00000 1122211   11222222    124555555544  77888888888888 654

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=94.99  E-value=0.06  Score=50.71  Aligned_cols=115  Identities=17%  Similarity=0.206  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHh----hcCCCCccEEEEe-cCCc---cccccC-
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADV----GHINTRSEVAGYM-GNDQ---LGQALE-   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl----~~~~~~~~v~~~~-~~~d---~~~al~-   95 (358)
                      .+.|.|+||+|++|..++..|+..|.  +|++.+++.   ......++    ....  .++.... +-+|   ..++++ 
T Consensus         5 ~k~vlVTGas~GIG~aia~~L~~~G~--~V~~~~r~~~~r~~~~~~~l~~~~~~~~--~~~~~~~~Dvtd~~~v~~~~~~   80 (324)
T 3u9l_A            5 KKIILITGASSGFGRLTAEALAGAGH--RVYASMRDIVGRNASNVEAIAGFARDND--VDLRTLELDVQSQVSVDRAIDQ   80 (324)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCTTTTTHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEecCcccccCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHH
Confidence            45799999999999999999999987  888877652   11111111    1111  1233322 1122   223333 


Q ss_pred             ------CCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           96 ------DSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        96 ------~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                            ..|++|..||.... +  ..+.   ...+..|+.    +.+.+.+.+++.. .+.||+++.-
T Consensus        81 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~-~g~iV~isS~  147 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK-HGLLIWISSS  147 (324)
T ss_dssp             HHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence                  89999999996421 1  1222   234555544    4455555556554 4566666543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=94.97  E-value=0.018  Score=55.43  Aligned_cols=72  Identities=18%  Similarity=0.283  Sum_probs=43.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCC----ccEEEEecCCccccccCCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTR----SEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~----~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      ++||+|+||+|.+|..++..|...+.+ ||+.+......+...+-.|..+.    ..+..    .+ .+.++++|+||++
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~----~~-~~~~~~vDvVf~a   89 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS----VK-DADFSTVDAVFCC   89 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC----GG-GCCGGGCSEEEEC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee----cc-hhHhcCCCEEEEc
Confidence            469999998899999999998887643 66666433322222221111111    11111    11 3456799999998


Q ss_pred             CC
Q 018314          104 AG  105 (358)
Q Consensus       104 ag  105 (358)
                      .+
T Consensus        90 tp   91 (359)
T 1xyg_A           90 LP   91 (359)
T ss_dssp             CC
T ss_pred             CC
Confidence            64

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=94.95  E-value=0.017  Score=52.65  Aligned_cols=110  Identities=17%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCc------cccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQ------LGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~al~~aDiV  100 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++..     +.... ..++.... +-+|      ..+.+..-|++
T Consensus        11 GK~alVTGas~GIG~aia~~la~~Ga--~Vv~~~~~~~~-----~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiL   82 (242)
T 4b79_A           11 GQQVLVTGGSSGIGAAIAMQFAELGA--EVVALGLDADG-----VHAPR-HPRIRREELDITDSQRLQRLFEALPRLDVL   82 (242)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTS-----TTSCC-CTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-----Hhhhh-cCCeEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence            45888999999999999999999997  89999997621     11111 11222221 1111      22456788999


Q ss_pred             EEcCCCCCCC-CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          101 IIPAGVPRKP-GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       101 Ii~ag~~~~~-g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      |..||..... ..+.   ...+.-|+    -..+...+.+++.  .+.||+++.-
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~--~G~IVnisS~  135 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQR--GGSILNIASM  135 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--CEEEEEECCG
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc--CCeEEEEeec
Confidence            9999975422 2222   22334443    3446666666654  4778887653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=94.93  E-value=0.037  Score=53.13  Aligned_cols=76  Identities=20%  Similarity=0.233  Sum_probs=50.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++.+|.|+|| |.+|..++..+...+.  +|+.+|++... ....++....  ..+.. ....++.+.++++|+||.+.+
T Consensus       166 ~~~~VlViGa-GgvG~~aa~~a~~~Ga--~V~v~dr~~~r~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~DvVI~~~~  239 (361)
T 1pjc_A          166 KPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR--VELLY-SNSAEIETAVAEADLLIGAVL  239 (361)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG--SEEEE-CCHHHHHHHHHTCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHhhCce--eEeee-CCHHHHHHHHcCCCEEEECCC
Confidence            4579999998 9999999999998886  89999987522 2222222111  11111 111345567789999999987


Q ss_pred             CCC
Q 018314          106 VPR  108 (358)
Q Consensus       106 ~~~  108 (358)
                      .|.
T Consensus       240 ~~~  242 (361)
T 1pjc_A          240 VPG  242 (361)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            654

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=94.92  E-value=0.056  Score=51.38  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=62.2

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      .+-..++|+|||. |.+|+.++..+...+.  +|+.||+.. ......++.       +..    .++.+.+++||+|++
T Consensus       141 ~~l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~~----~~l~ell~~aDvV~l  206 (330)
T 4e5n_A          141 TGLDNATVGFLGM-GAIGLAMADRLQGWGA--TLQYHEAKALDTQTEQRLG-------LRQ----VACSELFASSDFILL  206 (330)
T ss_dssp             CCSTTCEEEEECC-SHHHHHHHHHTTTSCC--EEEEECSSCCCHHHHHHHT-------EEE----CCHHHHHHHCSEEEE
T ss_pred             CccCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCCCcHhHHHhcC-------cee----CCHHHHHhhCCEEEE
Confidence            3456789999997 9999999998876665  999999875 333333222       221    245678999999999


Q ss_pred             cCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          103 PAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       103 ~ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      ..-. +...+.     +  |       .+.+....|++++|+++.
T Consensus       207 ~~P~t~~t~~l-----i--~-------~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          207 ALPLNADTLHL-----V--N-------AELLALVRPGALLVNPCR  237 (330)
T ss_dssp             CCCCSTTTTTC-----B--C-------HHHHTTSCTTEEEEECSC
T ss_pred             cCCCCHHHHHH-----h--C-------HHHHhhCCCCcEEEECCC
Confidence            7521 111111     0  1       123455568899998854

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=94.89  E-value=0.048  Score=48.86  Aligned_cols=56  Identities=25%  Similarity=0.369  Sum_probs=41.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEE-EEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRL-ALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei-~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~a  104 (358)
                      |||+|||+ |.||..++..+...++  ++ .++|.++. .     .      .  .+   +|+.+.+ .++|+|+++.
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~-----~------~--~~---~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-H-----E------K--MV---RGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-C-----T------T--EE---SSHHHHTTSCCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-h-----h------h--hc---CCHHHHhcCCCCEEEECC
Confidence            58999998 9999999988876565  76 68997641 1     0      0  22   3455666 6999999986

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=94.87  E-value=0.035  Score=52.34  Aligned_cols=70  Identities=6%  Similarity=0.077  Sum_probs=44.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi  102 (358)
                      .+++||+|||+ |.+|..++..+...+.. +|+ ++|.+...+..  +.+....+  ..   .+|+++.++  ++|+|++
T Consensus         3 m~~~~igiiG~-G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~--~~~~~~~~--~~---~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            3 LDKIRYGIMST-AQIVPRFVAGLRESAQA-EVRGIASRRLENAQK--MAKELAIP--VA---YGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             CCCEEEEECSC-CTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHH--HHHHTTCC--CC---BSSHHHHHHCTTCSEEEE
T ss_pred             CCeEEEEEECc-hHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHH--HHHHcCCC--ce---eCCHHHHhcCCCCCEEEE
Confidence            45689999998 99999999888876533 555 78887632221  11111001  11   245566666  8999999


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      +.
T Consensus        74 ~t   75 (330)
T 3e9m_A           74 PT   75 (330)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.87  E-value=0.043  Score=52.63  Aligned_cols=95  Identities=23%  Similarity=0.355  Sum_probs=62.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .-..++|+|||. |.||..++..+...+.  +|..||... ......++.       +..   ..++++.+++||+|+++
T Consensus       161 ~l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~  227 (351)
T 3jtm_A          161 DLEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVIN  227 (351)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEEC
T ss_pred             cccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEEC
Confidence            345679999997 9999999999987676  899999875 233332221       122   13567889999999998


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          104 AGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       104 ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      .-. +...+.     +  |.       +.+....|++++|+++.
T Consensus       228 ~Plt~~t~~l-----i--~~-------~~l~~mk~gailIN~aR  257 (351)
T 3jtm_A          228 MPLTEKTRGM-----F--NK-------ELIGKLKKGVLIVNNAR  257 (351)
T ss_dssp             SCCCTTTTTC-----B--SH-------HHHHHSCTTEEEEECSC
T ss_pred             CCCCHHHHHh-----h--cH-------HHHhcCCCCCEEEECcC
Confidence            522 111121     1  11       22444568899988854

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.86  E-value=0.037  Score=55.16  Aligned_cols=38  Identities=21%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCC--CcEEEEEecCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPL--VSRLALYDIAN   64 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~--~~ei~L~D~~~   64 (358)
                      .-.+||.|||| |.||+.++..|++++-  ..+|++.|.+.
T Consensus        11 ~~~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           11 LFKNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             CCCSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             cCCCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            34579999998 9999999999999762  46899999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	9e-47
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	2e-41
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	9e-41
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	5e-38
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	4e-35
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	3e-33
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	3e-32
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	5e-32
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	9e-32
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	2e-31
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	3e-31
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	1e-30
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	3e-30
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	6e-30
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-29
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	2e-29
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	6e-29
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	2e-28
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	2e-27
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	3e-27
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	6e-27
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-25
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	3e-25
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	2e-24
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	3e-24
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	4e-24
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	5e-24
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	6e-24
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	3e-23
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	7e-23
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	1e-22
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	3e-22
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	4e-22
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	5e-22
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	5e-22
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	7e-22
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	3e-21
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	6e-21
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	1e-20
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-20
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	2e-20
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	3e-20
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	7e-20
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	1e-19
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	2e-19
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	7e-18
d1ojua2	152	d.162.1.1 (A:164-331) Lactate dehydrogenase {Archa	2e-13
d1edza1	171	c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehy	0.002
d1nvmb1	157	c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydroge	0.002

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  153 bits (389), Expect = 9e-47
 Identities = 99/143 (69%), Positives = 119/143 (83%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KVAVLGA+GGIGQPL+LL+K +PLVSRL LYDIA+TPGVAAD+ HI TR+ V GY+G +Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
           L   L+  DVV+IPAGVPRKPGMTRDDLFN NA IV  L +A A++CP+A++ +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
           ST+PI AEVFKK G YN  K+FG
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  141 bits (355), Expect = 2e-41
 Identities = 79/150 (52%), Positives = 107/150 (71%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD+VRA  F A    ++ A V+VPV+GGHAG TI+PL SQ TPK +   + +  LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVV+AKAG GSATLSMAYAGA F  + +  +NG   VVECSFV+S  T+ P+F
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYF 120

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           ++ + LGK G+E+ LG+G +S FE++ + +
Sbjct: 121 STPLLLGKKGIEKNLGIGKISPFEEKMIAE 150

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  139 bits (350), Expect = 9e-41
 Identities = 75/150 (50%), Positives = 96/150 (64%), Gaps = 1/150 (0%)

Query: 173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTK 232
           VTTLD++R+ TF A        EV VPV+GGH+G+TILPL SQ     +  ++++  LTK
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGV-SFTEQEVADLTK 59

Query: 233 RTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFF 292
           R Q+ GTEVVEAKAG GSATLSM  A A F  + ++ L G   VVEC++V+       FF
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFF 119

Query: 293 ASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           +  + LGKNGVEE   +G LS FEQ  LE 
Sbjct: 120 SQPLLLGKNGVEERKSIGTLSAFEQNALEG 149

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  130 bits (329), Expect = 5e-38
 Identities = 91/145 (62%), Positives = 108/145 (74%), Gaps = 3/145 (2%)

Query: 30  KVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN 87
           KVAVLGAAGGIGQ LALL+K   P  S L+LYDIA  TPGVA D+ HI T  ++ G+ G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D    ALE +DVV+I AGV RKPGM R DLFN+NAGIVK+L   +AK CP A + +I+NP
Sbjct: 62  DAT-PALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           VN+TV IAAEV KKAG Y++ KLFG
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  124 bits (312), Expect = 4e-35
 Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIANTPGVAADVGHINTRSE---V 81
            +AV GAAG I   L   +    +        L L     +      V      S    +
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
                     +  ED D  ++    PR PGM R  L +IN  I  D   A+      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 141 VNMISNPVNSTVPIAAE 157
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  118 bits (297), Expect = 3e-33
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGN 87
           K+  +GA G +G   A    LN  V  +AL DIA     G A D+ H     +    +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                 L+ S+++++ AG+ RKPGMTR DL + NAGI+KD+   I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    I      K       ++FG+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  116 bits (291), Expect = 3e-32
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 8/145 (5%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGN 87
           K+AV+GA G +G  LA       +   + L DIA         D+ H ++        G+
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
           D   +   D+D+V+I AG  +KPG +R +L      I+K +   + K  PNAI  +I+NP
Sbjct: 62  DDP-EICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           V+    IA  V +K     E ++FG
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  115 bits (289), Expect = 5e-32
 Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 9/141 (6%)

Query: 30  KVAVLGAAGGIGQPLALL-----MKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG- 83
           +V V GAAG I   L        +        L L DI    GV   V        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 84  --YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI- 140
              +  D+   A +D DV I+   +PR+ GM R DL   N  I K   +A+ KY   ++ 
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 141 VNMISNPVNSTVPIAAEVFKK 161
           V ++ NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  114 bits (287), Expect = 9e-32
 Identities = 43/147 (29%), Positives = 71/147 (48%), Gaps = 10/147 (6%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           KV+V+GAAG +G      + L  +   +   DI         VG     +    Y  N +
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIP--DKEDDTVGQAADTNHGIAYDSNTR 59

Query: 90  LG----QALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           +     +    SDVV+I AG+PR+PG TR DL   NA I++D+ S++ ++  + I    S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +      +AG  + +++ G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  114 bits (285), Expect = 2e-31
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI--ANTPGVAADVGHINTRSEVAGYMGN 87
           K+ V+GA G +G   A  +    L   L L D+      G A D+            +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SD+VII AG+PRKPGMTR+DL   NAGIVK++   I K+  N I+ ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFGV 173
           ++    +A           ++++ G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  113 bits (284), Expect = 3e-31
 Identities = 39/149 (26%), Positives = 63/149 (42%), Gaps = 12/149 (8%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVS--RLALYDIANTPGVAADVGHINTRSE------V 81
           +VAV GAAG IG  L   +    ++   +  +  +   P     +  +    E      +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAI 140
           AG    D    A +D+D  ++    PRK GM R DL  +N  I  +   A+A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKK 169
           V ++ NP N+   IA   +K A   N + 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  111 bits (279), Expect = 1e-30
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ 89
           K+ ++G  G +G   A  + +      + L D+         +  I+             
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 90  LGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN 149
               L+ SDVVI+ AGVP+KPG TR  L   NA ++K++   ++KY P++IV +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 150 STVPIAAEVFKKAGTYNEKKLFG 172
               +    F K    + +K+FG
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  110 bits (276), Expect = 3e-30
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 11/147 (7%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH-INTRSEVAGYM 85
            KVA++GA G +G   A  M L    + L L D+      G A D+ H +    +++ Y 
Sbjct: 2   SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA 60

Query: 86  GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS 145
           G+      ++D DV+++ AG  RKPG TR DL   N  I K++   I KY  + ++ ++S
Sbjct: 61  GDYS---DVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117

Query: 146 NPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           NPV+    +     +K       K+ G
Sbjct: 118 NPVDIITYMI----QKWSGLPVGKVIG 140

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  110 bits (276), Expect = 6e-30
 Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R ++F A +  V++ ++N  V+GGH    +  +         ++D    E I  L 
Sbjct: 4   LDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT++GG E+VE    +GSA  + A +     ++ +     V         Q    +  F
Sbjct: 64  ERTRNGGAEIVEH-LKQGSAFYAPASSVVEMVESIVLDRKRVLPCAVGLEGQY-GIDKTF 121

Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               V+LG+NGVE++  +  L   + + L+K
Sbjct: 122 VGVPVKLGRNGVEQIYEI-NLDQADLDLLQK 151

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  109 bits (273), Expect = 1e-29
 Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD----EDIKALT 231
           LD  R +TF A +A V+V +V   ++GGH    +            +++    + +  + 
Sbjct: 4   LDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQIV 63

Query: 232 KRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPF 291
           +RT+ GG E+V      GSA  + A A A   +A LK    V  V      Q  + ++ F
Sbjct: 64  ERTRKGGGEIVNLL-KTGSAYYAPAAATAQMVEAVLKDKKRVMPVAAYLTGQYGLNDIYF 122

Query: 292 FASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               V LG  GVE++L L PL++ E   L  
Sbjct: 123 G-VPVILGAGGVEKILEL-PLNEEEMALLNA 151

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  108 bits (270), Expect = 2e-29
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYMGN 87
           +K++++GA G +G   A  +    L   + L  +   P G A D+   +        +  
Sbjct: 2   KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG 60

Query: 88  DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP 147
                   +SDV+++ +G PRKPGM+R+DL  +NA I +   S  A   PNA++ M++NP
Sbjct: 61  TNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNP 120

Query: 148 VNSTVPIAAEVFKKAGTYNEKKLFG 172
           +++   +AAEV      + ++++ G
Sbjct: 121 LDAMTYLAAEVSG----FPKERVIG 141

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score =  107 bits (268), Expect = 6e-29
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 13/154 (8%)

Query: 27  PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY 84
           P  K+ ++G+ G IG  +A L+    L   + L+DI      G A D  H N  +     
Sbjct: 2   PKAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNA 139
           +        L  +DVVI+ AG  + PG +     RDDL  +N  I+ ++   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV 173
            + +++NPV+  V +      +     + K+ G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score =  106 bits (265), Expect = 2e-28
 Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 25  SVPDR-KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG 83
           S+P+  KV ++G  G +G   A  M    +     + D+         +   + ++  A 
Sbjct: 1   SMPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAP 59

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                      +D+D+V+I AG P+KPG +R DL N N  I+  +   +     + I  +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
            +NPV+    I      K   + ++++ G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIG 144

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score =  103 bits (258), Expect = 2e-27
 Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 8/153 (5%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRS 79
              +VP+ K+ V+G  G +G   A+ +    L   LAL D+      G   D+ H +   
Sbjct: 14  EEATVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFL 72

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNA 139
           +    + + +      +S +V++ AGV ++ G +R +L   N  + K +   I KY P+ 
Sbjct: 73  QTPKIVAD-KDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDC 131

Query: 140 IVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+ ++SNPV+    +      K     + ++ G
Sbjct: 132 IIIVVSNPVDILTYVT----WKLSGLPKHRVIG 160

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score =  103 bits (257), Expect = 3e-27
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 14/152 (9%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG 86
           +KVA++G+ G IG  +  L  L  L   + LYD+      G A D+ H+ +  +    + 
Sbjct: 8   KKVAMIGS-GMIGGTMGYLCALRELAD-VVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR 65

Query: 87  ND-QLGQALEDSDVVIIPAGVPRKPG-----MTRDDLFNINAGIVKDLCSAIAKYCPNAI 140
            +     AL  +D VI+ AG+ + PG      +R+DL   N+ I++++   I KYCP   
Sbjct: 66  AEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTF 125

Query: 141 VNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           + +++NP++  V +  E            + G
Sbjct: 126 IIVVTNPLDCMVKVMCEASG----VPTNMICG 153

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  102 bits (256), Expect = 6e-27
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 13/161 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  RAK   A K  V   +V   ++ G+   T  P  + A  K    +  +    K 
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 234 TQDGGTEVVEA---------KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQS 284
                 E +           KA K S+ +S A A          G      V        
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGIISDG 120

Query: 285 T---VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               V +   ++  V +     + V GL P++DF +E ++ 
Sbjct: 121 NSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSREKMDL 160

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (245), Expect = 2e-25
 Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 24  ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGH----INT 77
           + +   K+ V+G  G +G   A+ + L  L   LAL D       G A D+ H    ++T
Sbjct: 15  DKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLST 73

Query: 78  RSEVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP 137
              V G   N        +S +VII AG     G TR DL   N  I+K +   + +  P
Sbjct: 74  PKIVFGKDYNV-----SANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSP 128

Query: 138 NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           +  + +++NPV+    +      K   +   ++ G
Sbjct: 129 DCKIIVVTNPVDILTYVVW----KISGFPVGRVIG 159

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 97.5 bits (242), Expect = 3e-25
 Identities = 33/146 (22%), Positives = 59/146 (40%), Gaps = 8/146 (5%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMG 86
            +V V+GA G +G      +    +   + L D   +   G A D  H    +     + 
Sbjct: 7   ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW 65

Query: 87  NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN 146
           +        D+D+V+I AG  +KPG TR DL + N  I + +  ++       +  + +N
Sbjct: 66  HGD-YDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124

Query: 147 PVNSTVPIAAEVFKKAGTYNEKKLFG 172
           PV+    I      K      +++ G
Sbjct: 125 PVD----ILTYATWKFSGLPHERVIG 146

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 96.1 bits (238), Expect = 2e-24
 Identities = 30/170 (17%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD-----EDIK 228
             LD  R +     +  V+    +  V+G H                 L       +D +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 229 ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTE 288
              K  +D      E    KG  + ++  + A  A+  +K L  V  V         + +
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAETIMKNLCRVHPVSTMVKDFYGIKD 122

Query: 289 LPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQF 338
             F +    L  +G+  ++ +  L   E++ L+K   T  +  + + L+F
Sbjct: 123 NVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQKSATT--LWDIQKDLKF 169

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 95.3 bits (236), Expect = 3e-24
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 15/160 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
             LD  R +   A K  ++ +  +  ++G H   ++           +L +         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPEMGTDN 62

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV 282
             E+ K + K   +   EV++ K     A            ++ LK L+ +  V      
Sbjct: 63  DSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVA---DLIESMLKNLSRIHPVSTMVKG 119

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
              +    F +    L   G+  V+    L D E   L+K
Sbjct: 120 MYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVAQLKK 158

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.3 bits (236), Expect = 4e-24
 Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 9/157 (5%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R +     K  VN    +  V+G H   ++            L   +    T +
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 234 TQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
            +     V         E    KG  + ++  +    A + LK L  V  V         
Sbjct: 63  NKQHWKNVHKQVVEGGYEVLDMKGYTSWAIGLSVTDLARSILKNLKRVHPVTTLVKGFHG 122

Query: 286 VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           + E  F +    LG++G+ + + +  ++  E+  L+K
Sbjct: 123 IKEEVFLSIPCVLGESGITDFVKV-NMTAEEEGLLKK 158

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 94.1 bits (233), Expect = 5e-24
 Identities = 48/149 (32%), Positives = 74/149 (49%), Gaps = 11/149 (7%)

Query: 30  KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGH------INTRSEVAG 83
           KV ++GA+G +G   ALL+   P +  L L    ++      +          TRS+   
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 84  YMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
           Y+ +D+  + +++SDVVII +GVPRK GM+R DL   NA IV      IA+ C   I  +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-V 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           I+NPV+     A         +   ++FG
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 94.0 bits (233), Expect = 6e-24
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 29  RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGN 87
           RK+ ++G  G +G  +A  +    +       D       A  +   +  + +  +    
Sbjct: 2   RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV 60

Query: 88  DQLGQALEDSDVVIIPAGVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM 143
                AL D+DVVI   G  +     P   R       + +V+ + + + +   + ++ +
Sbjct: 61  INDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVV 120

Query: 144 ISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
           ISNPV+    +   +F+    +   K+ G
Sbjct: 121 ISNPVD----VITALFQHVTGFPAHKVIG 145

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 93.0 bits (230), Expect = 3e-23
 Identities = 31/177 (17%), Positives = 64/177 (36%), Gaps = 19/177 (10%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +   A +  VNV  V+  + G H    +    S       ++D         
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 225 ---EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF 281
              +  + + +  ++   ++     GKG+   ++  +G    +A L   N +  V     
Sbjct: 61  LDADKREEIHQEVKNAAYKI---INGKGATNYAIGMSGVDIIEAVLHDTNRILPVSSMLK 117

Query: 282 VQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQF 338
               ++++        L + GV   +   P+SD E   L++   T  +++      F
Sbjct: 118 DFHGISDICMS-VPTLLNRQGVNNTINT-PVSDKELAALKRSAET--LKETAAQFGF 170

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 91.4 bits (226), Expect = 7e-23
 Identities = 34/152 (22%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKAL 230
           FG   LD  R +   + + +  V  V   ++G H G   +P+FS+ +      +      
Sbjct: 1   FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEK 58

Query: 231 TKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELP 290
            +   D     ++    KG+     A   A   +A L     V         +    +  
Sbjct: 59  EQLLGDLQESAMDVIERKGATEWGPARGVAHMVEAILHDTGEVLPASVKLEGEFGHED-T 117

Query: 291 FFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            F   V LG NGVEE++    L D+EQ+ +  
Sbjct: 118 AFGVPVSLGSNGVEEIVEW-DLDDYEQDLMAD 148

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 91.0 bits (225), Expect = 1e-22
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +   A   NV+   V+  ++G H G T  P++S A        E +KA  + 
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEI 59

Query: 234 TQDGGTEVV--------EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST 285
            +D   ++         E    KG+    +A A A  + A L   N V  +      Q  
Sbjct: 60  KEDKLVKMFEDVRDAAYEIIKLKGATFYGIATALARISKAILNDENAVLPLSVYMDGQYG 119

Query: 286 VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           + +  +  +   + +NG++ +L + PL+D E+E ++K
Sbjct: 120 IND-LYIGTPAVINRNGIQNILEI-PLTDHEEESMQK 154

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 89.9 bits (222), Expect = 3e-22
 Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 16/160 (10%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD +R +   + K  V+V  V+  ++G H    +           N+ +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 225 --EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV 282
             ED K + +  +  G  +++ K                        +  V  V+   + 
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVETLLKNQNTIRTVGTVINGMYG 120

Query: 283 QSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                     +    +   GV+EVL    L+  E+E L  
Sbjct: 121 IED----VAISLPSIVNSEGVQEVLQF-NLTPEEEEALRF 155

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.3 bits (221), Expect = 4e-22
 Identities = 23/167 (13%), Positives = 47/167 (28%), Gaps = 32/167 (19%)

Query: 30  KVAVLGAAGGIGQPLALLM----KLNPLVSRLALYDIANTP-GVAADVGHINTRSEVAGY 84
           ++AV+G  G    P  +        +  +  +  YDI      +  D      +      
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 85  MGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIA----------- 133
           + +     A+ D+  VI         G   D+   +  G++    + +            
Sbjct: 61  ISDT-FEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 134 --------KYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                   +   NA +   +NP         E  +       +K  G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 89.1 bits (220), Expect = 5e-22
 Identities = 24/149 (16%), Positives = 44/149 (29%), Gaps = 3/149 (2%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD  R +       +++   V+   +G H G +    +S              A    
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDID 60

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA 293
                 E  +      +     +Y  A  A    K +            +       + +
Sbjct: 61  LAAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKAVMADAHAELVVSNRRDDMG-MYLS 119

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               +G++GV     L  L+  EQE L +
Sbjct: 120 YPAIIGRDGVLAETTL-DLTTDEQEKLLQ 147

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 89.5 bits (221), Expect = 5e-22
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 15/159 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +T  A     +   V+V V+G H    +            L +         
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            + ++   ++T+    E++E K     A                K +  +   +E     
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESIFFDEKRVLTLSVYLEDYLGV 121

Query: 284 STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             +      +  V LGK+GVE +L L  L++ E E   K
Sbjct: 122 KDL----CISVPVTLGKHGVERILEL-NLNEEELEAFRK 155

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 88.7 bits (219), Expect = 7e-22
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 14/156 (8%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD---------ED 226
           LD  R K + + K NV   +VN  +VG H    +L           L +          +
Sbjct: 3   LDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDAE 62

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++A+  RT +   E+V   A    A  +     A      LK +     ++E  +  S +
Sbjct: 63  LEAIFDRTVNTALEIVNLHASPYVAPAAAIIEMAESYLKDLKKVLICSTLLEGQYGHSDI 122

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               F  + V LG NGVE+V+ L  L+  E+   ++
Sbjct: 123 ----FGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE 153

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 87.2 bits (215), Expect = 3e-21
 Identities = 26/153 (16%), Positives = 51/153 (33%), Gaps = 6/153 (3%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T LD +R K   A    V++ EV   ++G H G +++PL S  +       +  +     
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGA----IFADACLKGLNGVPDVVECSFVQSTVTEL 289
             +   +V               +  A          +     +  +      +      
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGSEFGPAAAILNVVRCIVNNEKRLLTLSAYVDGEFDGIRD 121

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
                 V++G++G+EEV+ +  L   E     K
Sbjct: 122 VCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRK 153

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 86.7 bits (214), Expect = 6e-21
 Identities = 31/155 (20%), Positives = 47/155 (30%), Gaps = 7/155 (4%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQAT----PKANLADEDIKA 229
           T LD  RAK   A K    V  +    V G+   T+ P    A     P   L D +   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFV--QSTVT 287
                          +A   S+  S A A          G      V        +  + 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASAANAAIEHIRDWALGTPEGDWVSMAVPSQGEYGIP 121

Query: 288 ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
           E   ++  V         V GL  +++F ++ +E 
Sbjct: 122 EGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI 155

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 85.7 bits (211), Expect = 1e-20
 Identities = 25/156 (16%), Positives = 54/156 (34%), Gaps = 10/156 (6%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
           T+LD  R +     + NV+   V+  ++G H G +    +S AT       +  K     
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKE-QGV 58

Query: 234 TQDGGTEVVEAKAGKG----SATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVT-- 287
           + D   ++ +    K     +   +  Y          K +    + V            
Sbjct: 59  SDDDLAKLEDGVRNKAYDIINLKGATFYGIGTALMRISKAILRDENAVLPVGAYMDGQYG 118

Query: 288 -ELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
               +  +   +G  G+++++   PLS  E + ++ 
Sbjct: 119 LNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQD 153

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 85.3 bits (210), Expect = 2e-20
 Identities = 29/153 (18%), Positives = 43/153 (28%), Gaps = 7/153 (4%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK------A 229
           LD  RA +  A K    V+ +    V G+   T+   +  A        + I        
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRD 62

Query: 230 LTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTEL 289
               T       +    G  SA  +   A     D  L        +   S     + E 
Sbjct: 63  TFLPTVGKRGAAIIDARGVSSAASAANAAIDHIHDWVLGTAGKWTTMGIPSDGSYGIPEG 122

Query: 290 PFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             F   V       + V GL  +  F QE +  
Sbjct: 123 VIFGFPVTTENGEYKIVQGL-SIDAFSQERINV 154

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 85.9 bits (212), Expect = 2e-20
 Identities = 35/159 (22%), Positives = 54/159 (33%), Gaps = 12/159 (7%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIK----- 228
           T LD  RAK   A KA V   +V+   + G+   T +P F  A        E IK     
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 229 --ALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQST- 285
               T   Q  G  +++      S+  S A + A    + +             +     
Sbjct: 61  EEEFTITVQKRGGALIQKW--GRSSAASTAVSIADAIKSLVTPTPEGDWFSTGVYTTGNP 118

Query: 286 --VTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             + E   F+   R   +G  E+       DF  E ++K
Sbjct: 119 YGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIKK 157

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 84.5 bits (208), Expect = 3e-20
 Identities = 21/159 (13%), Positives = 49/159 (30%), Gaps = 15/159 (9%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLAD--------- 224
           T LD  R +       +V    V+  ++G H    +            +           
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 225 -EDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQ 283
            +D++ +    +D   +++E K                        +  V   ++  + +
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRAILHNENAILTVSAYLDGLYGE 120

Query: 284 STVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
             V    +      + +NG+ EV+ +  L+D E+     
Sbjct: 121 RDV----YIGVPAVINRNGIREVIEI-ELNDDEKNRFHH 154

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 83.8 bits (206), Expect = 7e-20
 Identities = 30/156 (19%), Positives = 62/156 (39%), Gaps = 12/156 (7%)

Query: 176 LDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLA---------DED 226
           LD  R + + A   +V+  +V   V+G H    +  +         +          ++ 
Sbjct: 4   LDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEKQ 63

Query: 227 IKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTV 286
           ++ + + T+  G E+V    G+GSA  + A +    A + L     V         +  +
Sbjct: 64  LEEIAEHTKVSGGEIVRFL-GQGSAYYAPAASAVAMATSFLNDEKRVIPCSVYCNGEYGL 122

Query: 287 TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK 322
            +  F      +G  G+E V+ L  L++ E++  +K
Sbjct: 123 KD-MFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQK 156

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 82.8 bits (204), Expect = 1e-19
 Identities = 31/165 (18%), Positives = 51/165 (30%), Gaps = 30/165 (18%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDI----ANTPGVAADVGHINTRSEV 81
            + + G  G    P   L LL  L    + +L LYD      +    A DV       ++
Sbjct: 5   SIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDI 63

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV---------------- 125
                 D   +A  D D V+    V +      D+   +  G+V                
Sbjct: 64  EFAATTDP-EEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRS 122

Query: 126 ----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN 166
                ++   + KY P+A +   SNP          +   +   N
Sbjct: 123 IGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILN 167

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 82.0 bits (202), Expect = 2e-19
 Identities = 28/172 (16%), Positives = 53/172 (30%), Gaps = 36/172 (20%)

Query: 30  KVAVLGAAGGIGQP---LALLMKLNPL-VSRLALYDIANTP--GVAADVGH---INTRSE 80
           K+A +G  G    P     L+ + + L V  L L DI                 +     
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 81  VAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIV--------------- 125
                      +AL+ +D V     V       +D+   +  G++               
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 126 -----KDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG 172
                 D+   + + CP+A +   +NP      +  E   +     ++K+ G
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAG----MVTEAVLRY--TKQEKVVG 167

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 77.9 bits (191), Expect = 7e-18
 Identities = 28/167 (16%), Positives = 43/167 (25%), Gaps = 34/167 (20%)

Query: 27  PDRKVAVLGAAGGIGQPLAL---LMKLNPL-VSRLALYDIA--NTPGVAADVGH-INTRS 79
           P  K+ ++GA G     L L   L K   L  S + L DI       +       +    
Sbjct: 1   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 59

Query: 80  EVAGYMGNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNI------------------- 120
               +     L   + D+D VI  A V     + +                         
Sbjct: 60  ADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDY 119

Query: 121 -------NAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK 160
                        D+   I K  P A     +NP+     +      
Sbjct: 120 YTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 152

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 65.0 bits (158), Expect = 2e-13
 Identities = 34/165 (20%), Positives = 58/165 (35%), Gaps = 14/165 (8%)

Query: 174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKR 233
             LD  R K         N+      ++G H G ++    S A       + D +A+   
Sbjct: 2   NQLDSQRLKERLYNAGARNI--RRAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVEND 55

Query: 234 TQDGGTEVVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFA 293
            +    EV++    KG+     A A      A ++    +         +  +  +    
Sbjct: 56  VRFVAAEVIK---RKGATIFGPAVAIYRMVKAVVEDTGEIIPTSMILQGEYGIENV-AVG 111

Query: 294 SKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHIRKLFQILQF 338
              +LGKNG  EV  +  LSD E E L        +R+  + L +
Sbjct: 112 VPAKLGKNGA-EVADI-KLSDEEIEKLRNSAKI--LRERLEELGY 152

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 3/118 (2%)

Query: 22  SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEV 81
               +  +K  V+  +  +G+PLA L+  +         +          +       E 
Sbjct: 23  EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVED 82

Query: 82  AGYMGNDQLGQALEDSDVVIIPAGVPR---KPGMTRDDLFNINAGIVKDLCSAIAKYC 136
            G    D L +   DSDVVI               ++    IN    K+    + +  
Sbjct: 83  LGEYSEDLLKKCSLDSDVVITGVPSENYKFPTEYIKEGAVCINFACTKNFSDDVKEKA 140

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} Length = 157

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 30  KVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGND 88
           KVA++G+ G IG   +  +++    +   A+  I       A    +   +  AG  G  
Sbjct: 6   KVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64

Query: 89  QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAI-------- 140
           +L +   D D V           +  + L       ++ +    A   P  +        
Sbjct: 65  KLPE-FADIDFVFDA--TSASAHVQNEALLRQAKPGIRLIDLTPAAIGPYCVPVVNLEEH 121

Query: 141 -----VNMISNPVNSTVPIAAEV 158
                VNM++   N  +  +A +
Sbjct: 122 LGKLNVNMVTYAGNLDIMTSAAL 144

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.98
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.98
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.98
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.98
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.97
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.97
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.97
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.96
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.96
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.96
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.96
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.96
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.96
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.96
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.96
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.95
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.95
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.95
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.95
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.95
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.95
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.95
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.95
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.94
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.94
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.94
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.94
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.94
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.93
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.93
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.93
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.92
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.92
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.91
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.91
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.9
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.53
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.95
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.81
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.42
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.39
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.39
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.37
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.31
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.14
d1up7a2	253	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.07
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.03
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.99
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.99
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	97.95
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	97.93
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	97.9
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	97.89
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.88
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	97.85
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	97.7
d1s6ya2	270	6-phospho-beta-glucosidase {Bacillus stearothermop	97.68
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.65
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	97.6
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	97.54
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.54
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	97.53
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	97.51
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	97.49
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.48
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.48
d1u8xx2	276	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.45
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.44
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.36
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	97.36
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.34
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.32
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.28
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.28
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.27
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.27
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.26
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.22
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.17
d1obba2	308	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	97.17
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.14
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.04
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.03
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.03
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.0
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.99
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.94
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.93
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.92
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	96.89
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.8
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.71
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	96.7
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.69
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.61
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.59
d1vjta2	278	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.58
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	96.55
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.55
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.51
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.51
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.51
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.49
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.48
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.43
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.39
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.37
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.34
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	96.33
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.33
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.3
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.27
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.25
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.22
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.21
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.21
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.2
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.14
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.12
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.09
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.07
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.03
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.0
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	95.98
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.96
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	95.95
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	95.91
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	95.91
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.89
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	95.89
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	95.86
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.85
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	95.83
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	95.82
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.8
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	95.79
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	95.77
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.77
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	95.71
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.7
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	95.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	95.66
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.65
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.64
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.63
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.61
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	95.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.55
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.54
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	95.54
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.5
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.49
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	95.46
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	95.41
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.4
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	95.4
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	95.37
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	95.32
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	95.28
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.28
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.27
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.22
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	95.2
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.15
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.12
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	95.12
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.11
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.08
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	95.02
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	95.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.93
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.89
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.87
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	94.85
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	94.85
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.73
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.72
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	94.71
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	94.64
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.61
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.59
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.55
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.49
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.47
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.3
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.21
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	94.2
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.18
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	94.16
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.14
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	94.12
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.1
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	94.09
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	94.04
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.02
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.02
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	93.86
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	93.77
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.77
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	93.7
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.65
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	93.58
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.56
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.5
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.42
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	93.3
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.3
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.18
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	93.17
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.12
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	93.01
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	92.93
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.85
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.7
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.66
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.65
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.65
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.64
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.62
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	92.56
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	92.55
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.54
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.52
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.38
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	92.27
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	92.26
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.25
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.17
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.03
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.01
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	91.94
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	91.9
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.86
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	91.85
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.76
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	91.7
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.52
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.31
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.98
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	90.94
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.87
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	90.71
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.71
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	90.52
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	90.47
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	90.39
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.37
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	90.26
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	89.97
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.92
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.91
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.81
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.78
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	89.76
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	89.66
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.54
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	89.44
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	89.42
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	89.31
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	89.2
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	88.92
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	88.78
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.15
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	87.87
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	87.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	87.39
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.36
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	87.28
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.16
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	86.93
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.67
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	86.52
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.14
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.97
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	85.8
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	85.78
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	85.77
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	85.45
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.16
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.14
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	85.1
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.08
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.8
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	84.5
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.42
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	84.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	84.02
d1ls1a2	207	GTPase domain of the signal sequence recognition p	83.82
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	83.59
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	83.3
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.14
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	82.99
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	82.73
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	82.48
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	82.33
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	82.22
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	81.85
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	81.69
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.56
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	81.54
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.42
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	81.29
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	81.03
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.74
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	80.17

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=9.2e-35  Score=246.53  Aligned_cols=143  Identities=69%  Similarity=1.112  Sum_probs=132.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPRK  109 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~~  109 (358)
                      ||+||||+|+||+++++.|+.+++++||+|+|+++.+++++|++|.............+|.+++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            99999977999999999999999999999999988899999999987655555554456667899999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          110 PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       110 ~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +||+|.+++..|.++++++++.|.+++|+++++++|||+|+||++++++++++++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999998888877799999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=2e-34  Score=244.13  Aligned_cols=140  Identities=33%  Similarity=0.513  Sum_probs=124.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |.||+|||| |+||+++|+.++++++++||+|+|+++  ++|+++||+|+.. ....... .++| +++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~-~~~~-~~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID-GSDD-PEICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceee-cCCC-HHHhhCCcEEEEec
Confidence            579999998 999999999999999999999999988  7899999999752 1122222 1345 57899999999999


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      |.|+++|++|.|++..|+++++++++.|.+++|++++|++|||+|+||+++   ++.+| ||++||||++
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvDvmt~~~---~~~sg-~p~~rViG~G  143 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDIATHVA---QKLTG-LPENQIFGSG  143 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHH---HHHHT-CCTTSEEECT
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchHHHHHHH---HHHHC-CChhhccCCC
Confidence            999999999999999999999999999999999999999999999999887   78898 9999999973

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-34  Score=243.63  Aligned_cols=143  Identities=64%  Similarity=0.992  Sum_probs=130.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+||||+|+||+++++.|+.+ +..+||+|+|+++ .+|+++||+|.........+.++++ +++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~-~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDA-TPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCC-HHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCC-ccccCCCCEEEECCCc
Confidence            79999997799999999998764 7889999999977 6899999999886666666655555 6799999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |+++|++|.+++..|.+++++++++|.+++|++++|++|||+|+|+++++++++..|.||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999998888888899999998

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.1e-33  Score=239.41  Aligned_cols=136  Identities=35%  Similarity=0.591  Sum_probs=124.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |+||+++++.++.++.++||+|+|+++  ++|+++||+|+.    ..+++..   ++| +++++|||+||+
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~---~~d-~~~~~~adiVvi   75 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG---GAD-YSLLKGSEIIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcccc---CCC-HHHhccccEEEE
Confidence            79999997 999999999999999999999999988  689999999974    2234443   345 589999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ++|.|+++|++|.+++.+|+++++++++.|.+++|+++++++|||+|++|+++   ++.+| ||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViG~  142 (142)
T d1ojua1          76 TAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTYIM---WKESG-KPRNEVFGM  142 (142)
T ss_dssp             CCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHHHH---HHHSC-CCTTSEEEC
T ss_pred             eccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChHHHHHHH---HHHHC-CChhcEecC
Confidence            99999999999999999999999999999999999999999999999999886   78898 999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.5e-34  Score=242.94  Aligned_cols=141  Identities=24%  Similarity=0.358  Sum_probs=127.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ....||+|||| |+||+++++.|++.++++||+|+|+++  ++++++||+|+..  ...+...+  .| +++++|||+||
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~d-~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEE
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEE--CC-HHHhccceeEE
Confidence            35679999998 999999999999999999999999987  6899999999753  23344433  44 68899999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      +++|.|+++|++|.+++.+|+++++++++.|.+++|++++|++|||+|++|+++   ++++| ||++||||++
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd~~t~~~---~k~sg-~p~~rViG~G  148 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVDILTYAT---WKFSG-LPHERVIGSG  148 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHH---HHHHT-CCGGGEEECT
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccHHHHHHH---HHHHC-cChhheecCC
Confidence            999999999999999999999999999999999999999999999999999987   78999 9999999973

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.2e-33  Score=237.22  Aligned_cols=137  Identities=32%  Similarity=0.426  Sum_probs=121.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC----cHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .||+||||+|+||+++++.++++++++||+|+|++.    ++++++||+|+. ++...+..+  .| +++++|||+||++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~-~~~~~~aDiVvit   77 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CC-HHHhhhcCEEEEe
Confidence            399999966999999999999999999999999864    568999999953 233333333  34 5789999999999


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      ||.|+++||+|.+++..|+++++++++.|.+++|+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        78 aG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvDvmt~~~---~k~sg-~~~~rViG  142 (142)
T d1o6za1          78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHL---YEAGD-RSREQVIG  142 (142)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHH---HHHSS-SCGGGEEE
T ss_pred             cccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHHHHHHHH---HHHHC-cCcccccC
Confidence            9999999999999999999999999999999999999999999999999886   78898 99999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.6e-33  Score=236.60  Aligned_cols=137  Identities=32%  Similarity=0.571  Sum_probs=123.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |||+|||| |+||+++++.++++++.+||+|+|+++  ++++++|+.|... .......+  +| +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA--GD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE--CC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccC--Cc-HHHhcCCCEEEEecc
Confidence            79999997 999999999999999999999999987  7899999998652 22333332  34 688999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      .|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd~~t~~~---~k~sg-~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFF---LKESG-MDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHHC-cCccceeCc
Confidence            99999999999999999999999999999999999999999999999887   78898 999999995

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=4.1e-33  Score=235.84  Aligned_cols=138  Identities=33%  Similarity=0.473  Sum_probs=117.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +||+|||| |+||+++++.+++.++++||+|||+++  ++++++||+|+.. ......++  .| +++++|||+||++||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEee--Cc-HHHhCCCceEEEecc
Confidence            49999998 999999999999999999999999988  6899999999753 23444432  34 688999999999999


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      .++++|++|.+++.+|+++++++++.|.+++|++++|++|||+|+||+++   ++.+| ||++||||++
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvdv~t~~~---~k~sg-~p~~rViG~G  142 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMI---QKWSG-LPVGKVIGSG  142 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHH---HHHHT-CCTTTEEECT
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHHHHHHHH---HHHHC-CCccceecCC
Confidence            99999999999999999999999999999999999999999999999886   78999 9999999973

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=3.4e-33  Score=240.38  Aligned_cols=138  Identities=27%  Similarity=0.467  Sum_probs=124.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +.+||+|||+ |+||+++++.|+++++++||+|||+++  ++|+++||+|...  +......  ..| +++++|||+||+
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~--~~d-~~~~~~adiVVi   94 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVA--DKD-YSVTANSKIVVV   94 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEE--CSS-GGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEe--ccc-hhhcccccEEEE
Confidence            4569999998 999999999999999999999999987  7899999999752  2233222  345 688999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +||.|+++|++|++++..|+++++++++.|.+++|++++|++|||+|+||+++   ++.+| ||++||||
T Consensus        95 tAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvDv~t~~~---~k~sg-lp~~rViG  160 (160)
T d1i0za1          95 TAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT---WKLSG-LPKHRVIG  160 (160)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             ecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999999999987   78898 99999998

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.98  E-value=1.5e-32  Score=232.34  Aligned_cols=136  Identities=36%  Similarity=0.618  Sum_probs=123.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      |||+|||| |+||+++++.|+.+++++||+|||+++  .+++++|+.|..    ...++..   ++| +++++|||+||+
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~---~~~-~~~~~dadvvvi   75 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG---SND-YADTANSDIVII   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEE---ESC-GGGGTTCSEEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEe---cCC-HHHhcCCeEEEE
Confidence            79999997 999999999999999999999999988  678889998874    2334443   244 688999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ++|.|+++|++|.+++.+|+++++++++.|.++||++|++++|||+|++|+++   ++.+| ||++||||+
T Consensus        76 tag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~~~~~~---~~~sg-~p~~rviG~  142 (142)
T d1guza1          76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDIMTHVA---WVRSG-LPKERVIGM  142 (142)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHHHHHHH---HHHHC-SCGGGEEEE
T ss_pred             EEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHHHHHHH---HHHhC-CChHhEeeC
Confidence            99999999999999999999999999999999999999999999999999886   78898 999999996

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=2.4e-32  Score=231.70  Aligned_cols=138  Identities=36%  Similarity=0.584  Sum_probs=120.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC----cHHHHHHhhcCC--CCccEEEEec-CCccccccCCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----TPGVAADVGHIN--TRSEVAGYMG-NDQLGQALEDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~----~~~~~~dl~~~~--~~~~v~~~~~-~~d~~~al~~aDiVI  101 (358)
                      |||+||||+|.||+++++.|+++++++||+|+|+++    .+++++||.|+.  ....++.+.. ++| +++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            799999977999999999999999999999999986    468899999963  2223333222 334 68999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      ++||.|+++|++|.|++..|+++++++++.|.+++|+++ +++|||+|+||+++   ++.+| ||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~i-ivVtNPvD~mt~~~---~k~sg-~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKI-FVITNPVDVMTYKA---LVDSK-FERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEE-EECSSSHHHHHHHH---HHHHC-CCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeE-EEEcCchHHHHHHH---HHHHC-cCcccccC
Confidence            999999999999999999999999999999999999886 46899999999887   78898 99999998

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.98  E-value=1.9e-33  Score=238.90  Aligned_cols=137  Identities=20%  Similarity=0.308  Sum_probs=117.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +||+|||| |+||+++++.|++++..+||+|||+++  ++++++||+|...  .......+  +| +++++|||+||++|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~--~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI--ND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEE--SC-GGGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceec--cC-HHHhccccEEEEec
Confidence            59999997 999999999999999999999999987  6899999999752  22334332  44 57899999999999


Q ss_pred             CCCC----CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          105 GVPR----KPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       105 g~~~----~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      |.|+    ++|++|.+++..|+++++++++.|.+++|++++|++|||+|+||+++   |+.+| ||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~k~sg-~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVDVITALF---QHVTG-FPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHHHHHHHH---HHHhC-CCccceeCc
Confidence            9877    67899999999999999999999999999999999999999999987   78998 999999995

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.98  E-value=9.2e-33  Score=234.69  Aligned_cols=143  Identities=26%  Similarity=0.442  Sum_probs=116.6

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCE
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      ||+ +.+||+|||+ |+||+++++.|++.++++||+|||+++  ++++++||+|+.. ......++  +| +++++|||+
T Consensus         1 sm~-~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~--~d-~~~~~~adi   75 (146)
T d1ez4a1           1 SMP-NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADL   75 (146)
T ss_dssp             CBT-TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSE
T ss_pred             CCC-CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEee--cc-HHHhccccE
Confidence            355 4679999997 999999999999999999999999988  7899999999752 22223332  45 578999999


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ||+++|.|+++|++|.+++.+|+++++++++.|.+++|++++|++|||+|++|+++   ++.+| ||++||||++
T Consensus        76 vvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvdv~t~~~---~k~sg-~p~~rViG~G  146 (146)
T d1ez4a1          76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYAT---WKFSG-FPKERVIGSG  146 (146)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECT
T ss_pred             EEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccHHHHHHH---HHHHC-cCccceecCC
Confidence            99999999999999999999999999999999999999999999999999999886   78898 9999999973

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-32  Score=236.02  Aligned_cols=138  Identities=27%  Similarity=0.430  Sum_probs=123.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +..||+|||| |+||+++|+.|+..++++||+|+|+++  ++|+++||+|+..  +......  .+| +++++|||+||+
T Consensus        18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~--~~d-~~~~~~adivvi   93 (159)
T d2ldxa1          18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVF--GKD-YNVSANSKLVII   93 (159)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEE--ESS-GGGGTTEEEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEe--ccc-hhhhccccEEEE
Confidence            4469999997 999999999999999999999999987  6899999999763  2222222  245 578999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +||.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv~t~~~---~k~sg-~p~~rV~G  159 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDILTYVV---WKISG-FPVGRVIG  159 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHHHHHHH---HHHHC-SCTTTEEE
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999999999886   78999 99999998

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.97  E-value=1e-31  Score=230.25  Aligned_cols=141  Identities=30%  Similarity=0.600  Sum_probs=124.8

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +-++.+||+|||| |.||+++++.|++.++ .||+|+|+++  ++++++|+.|..    ....+..   +++++++++||
T Consensus         3 ~~~k~~KI~IIGa-G~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~a   77 (154)
T d1pzga1           3 LVQRRKKVAMIGS-GMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA---EYSYEAALTGA   77 (154)
T ss_dssp             CCSCCCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE---ECSHHHHHTTC
T ss_pred             cccCCCcEEEECC-CHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhhccccCCeeEEec---cCchhhhhcCC
Confidence            4457789999998 9999999999999886 4999999988  689999999964    2333443   35567899999


Q ss_pred             CEEEEcCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           98 DVVIIPAGVPRKPGM-----TRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        98 DiVIi~ag~~~~~g~-----~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |+||+++|.++++|+     +|.+++..|+++++++++.|.++||++++|++|||+|++|+++   ++.+| ||++||||
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~lt~~~---~~~sg-~p~~rViG  153 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVM---CEASG-VPTNMICG  153 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHHHHHHH---HHHhC-cChhcEec
Confidence            999999999999985     8999999999999999999999999999999999999999987   78898 99999999


Q ss_pred             e
Q 018314          173 V  173 (358)
Q Consensus       173 ~  173 (358)
                      +
T Consensus       154 ~  154 (154)
T d1pzga1         154 M  154 (154)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=6.2e-32  Score=230.44  Aligned_cols=137  Identities=34%  Similarity=0.625  Sum_probs=121.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ..||+|||| |+||+++++.++++++ .||+|||+++  ++++++|++|..    .+..+..   +++ +++++|||+||
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~---~~~-~~~~~~advvv   76 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG---SNT-YDDLAGADVVI   76 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE---ECC-GGGGTTCSEEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe---ccc-ccccCCCcEEE
Confidence            469999997 9999999999998885 6999999988  789999999974    2233443   223 68899999999


Q ss_pred             EcCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          102 IPAGVPRKPGMT-----RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       102 i~ag~~~~~g~~-----r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      +++|.++++|++     |++++..|+++++++++.|.++||+++++++|||+|+||+++   ++.+| ||++||||++
T Consensus        77 itag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD~~t~~~---~~~sg-~p~~rViG~G  150 (150)
T d1t2da1          77 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVDVMVQLL---HQHSG-VPKNKIIGLG  150 (150)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHH---HHHHC-CCGGGEEECC
T ss_pred             EecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHH---HHHHC-CCchheeccC
Confidence            999999999876     999999999999999999999999999999999999999987   78888 9999999973

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.97  E-value=6.4e-31  Score=222.34  Aligned_cols=134  Identities=31%  Similarity=0.583  Sum_probs=112.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +||+|||| |.||+++|+.|+++++. |++|+|+++  +.++++|+.|..    ...++..   ++| +++++|||+||+
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~---~~d-~~~~~~advvvi   75 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG---TNN-YADTANSDVIVV   75 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE---ESC-GGGGTTCSEEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEEEe---cCc-HHHhcCCCEEEE
Confidence            59999997 99999999999998864 899999987  689999999985    2334553   245 578999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +||.|+++|++|.+++..|+++++++++.|.+++|+++++++|||+|+||+++   ++.+| ||++||||
T Consensus        76 tag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~---~~~sg-lp~~rViG  141 (142)
T d1uxja1          76 TSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLA---AEVSG-FPKERVIG  141 (142)
T ss_dssp             CCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHH---HHHHC-CCGGGEEE
T ss_pred             eeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHH---HHHHC-cCcccccC
Confidence            99999999999999999999999999999999999999999999999999987   78898 99999998

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=3.7e-30  Score=223.53  Aligned_cols=157  Identities=51%  Similarity=0.816  Sum_probs=138.1

Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|.||++||++++|+++|++|++|+++|+|+||+++++|+||++.++.+++.++++++.+++++++++|++.+.+.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999877899999999988889999999999999999999999887778888


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      ++++.++++++.+++.+..+...+.++++......+++|+|+||++|++|+++++++++|+++|+++|++|++.|++
T Consensus        81 ~~~~~a~~~~~~~i~~~~~~~~~v~~~~~~~~~~~~~v~~s~P~~ig~~Gi~~v~~l~~L~~~E~~~l~~s~~~lk~  157 (169)
T d1mlda2          81 LSMAYAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGIGKISPFEEKMIAEAIPELKA  157 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEECCSSSSSEEEEEEEEETTEEEEECCCCSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCceEEEEEeeccccccCCEeEeeeEEEcCCccEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            89999999999999887655445555554332334689999999999999999999867999999999999999983

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.96  E-value=1.2e-29  Score=221.51  Aligned_cols=144  Identities=26%  Similarity=0.306  Sum_probs=124.9

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCc-----EEEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVS-----RLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~-----ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~   96 (358)
                      +++.||+|+||+|+||+++++.|++++.++     +|+|+|+++    +++.++|+.|+..+. +.....+++.+++++|
T Consensus        22 k~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~-~~~~~~~~~~~~~~~~  100 (175)
T d7mdha1          22 KKLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-LREVSIGIDPYEVFED  100 (175)
T ss_dssp             CCCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTT
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccccc-ccCccccccchhhccC
Confidence            467899999988999999999999876543     899999977    478899999987643 3333223566899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ||+||+++|.|+++||+|.|++..|.+|++++++.|.+|+| +++++++|||+|++|+++   +++++++|++||+||
T Consensus       101 aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         101 VDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             CceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999996 899999999999999987   787555999999986

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.96  E-value=1.2e-29  Score=219.29  Aligned_cols=150  Identities=27%  Similarity=0.441  Sum_probs=135.3

Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCC-----CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      +||++||++++|+++|+++++|+++|||+||+ ++||+||++++++.     ++++.++++.+++++++++|++.+ |||
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGHGD-AMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECSGG-GEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            69999999999999999999999999999998 89999999998652     566778899999999999998854 789


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      ++.|++|.++.+++++++.+.+   .++|++ +.+++| .+++|||+||++|++|+++++++ +||++|+++|++|++.|
T Consensus        81 sa~~a~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~s~P~~lg~~Gv~~i~~l-~Ls~~E~~~l~~sa~~l  156 (163)
T d1guza2          81 SAFYAPASSVVEMVESIVLDRK---RVLPCAVGLEGQYGIDKTFVGVPVKLGRNGVEQIYEI-NLDQADLDLLQKSAKIV  156 (163)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHheeccCC---CEEEEeeeeccccCCCCcEEEEeeEEcCCeeEEEecC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999998764   467775 467877 67999999999999999999998 89999999999999999


Q ss_pred             HHH
Q 018314          328 HIR  330 (358)
Q Consensus       328 ~~~  330 (358)
                      ++.
T Consensus       157 ~~~  159 (163)
T d1guza2         157 DEN  159 (163)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            843

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.96  E-value=1e-29  Score=217.71  Aligned_cols=143  Identities=28%  Similarity=0.366  Sum_probs=119.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCC-----cEEEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLV-----SRLALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~-----~ei~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +|+||+||||+|+||+++++.|+.++++     .+++|+|+++    +++..+|+.++..+. .......++.+++++||
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   80 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccc-ccccccCcccccccCCc
Confidence            6899999998899999999999987653     4899999987    344555666765432 22222234557999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      |+||+++|.|+++|++|.|++..|.++++++++.|.+++|+ +++|++|||+|+||+++   +++++++|++||+|+
T Consensus        81 dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~mt~v~---~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNCLTA---SKSAPSIPKENFSCL  154 (154)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             eEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHHHHHHH---HHHcCCCCHHHEeCC
Confidence            99999999999999999999999999999999999999975 56888999999999987   788833999999986

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.96  E-value=1.4e-29  Score=218.91  Aligned_cols=150  Identities=31%  Similarity=0.437  Sum_probs=135.2

Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCC-----CCHHHHHHHHHHHhcCcceEEeeccCCC
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN-----LADEDIKALTKRTQDGGTEVVEAKAGKG  249 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~-----~~~~~~~~l~~~v~~~~~~i~~~~~gkg  249 (358)
                      +||++||++++|+++|++|++|+++|||+||+ ++||+||.+++++.     +++..++++.+++++++++|++++ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGD-EMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECSGG-GEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            59999999999999999999999999999998 89999999998642     456678999999999999998865 789


Q ss_pred             CccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 018314          250 SATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTF  327 (358)
Q Consensus       250 ~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L  327 (358)
                      ++.|++|.++++++++|+.+.+   .++|++ +++++| .+++|||+||++|++|+++++++ +||++|+++|++|++.|
T Consensus        81 s~~~a~a~a~~~i~~~i~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~ig~~Gv~~v~~l-~L~~~E~~~l~~s~~~l  156 (164)
T d1uxja2          81 SAYYAPAAATAQMVEAVLKDKK---RVMPVAAYLTGQYGLNDIYFGVPVILGAGGVEKILEL-PLNEEEMALLNASAKAV  156 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHhCCCC---ceeeeeeeeccccCCCCceEEECeEEeCCeeEEEeCC-CCCHHHHHHHHHHHHHH
Confidence            9999999999999999999865   467665 568888 56899999999999999999998 99999999999999999


Q ss_pred             HHH
Q 018314          328 HIR  330 (358)
Q Consensus       328 ~~~  330 (358)
                      +.+
T Consensus       157 k~~  159 (164)
T d1uxja2         157 RAT  159 (164)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            844

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.96  E-value=1.9e-29  Score=214.88  Aligned_cols=141  Identities=23%  Similarity=0.267  Sum_probs=124.0

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCC-ceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEV-NVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v-~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      |.|||+||++.|++..   +.++ +++|+||||+ ++||+||.+++++..   +++++.+++++++++|++   +||+|+
T Consensus         2 t~LDsaR~r~~l~~~~---~~~v~~a~ViGeHGd-s~vp~~S~~~i~g~~---~~~~i~~~v~~~g~eIi~---~kG~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAG---ARNIRRAWIIGEHGD-SMFVAKSLADFDGEV---DWEAVENDVRFVAAEVIK---RKGATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTT---CBSCCCCCEEBCSST-TCEECGGGCCCBSCC---CHHHHHHHHHTTHHHHHH---HHSSCC
T ss_pred             CccHHHHHHHHHHccC---CCCcceeEEEecCCC-ccccccccccccCcc---chhHhHHHHHHHHHHhhh---hcccee
Confidence            5799999999998765   4455 8999999998 899999999986543   356888999999999998   468999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      |++|.++++++++|++|.+   .++|++ +++|+| .+|+|+|+||++|++|++ ++++ +||++|+++|++|++.|++
T Consensus        72 ~gia~a~~~iv~aIl~d~~---~v~pvs~~l~geyG~~dv~lsvP~vig~~Gve-i~~l-~L~~~E~~~l~~Sa~~ik~  145 (152)
T d1ojua2          72 FGPAVAIYRMVKAVVEDTG---EIIPTSMILQGEYGIENVAVGVPAKLGKNGAE-VADI-KLSDEEIEKLRNSAKILRE  145 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEE-ECCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCC---CceeeeEEeccccCCCCEEEEeEEEECCCceE-EEcC-CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999864   588887 579998 678999999999999985 8888 8999999999999999983

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.1e-29  Score=213.91  Aligned_cols=142  Identities=30%  Similarity=0.467  Sum_probs=119.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcE-----EEEEecCC----cHHHHHHhhcCCCCccEEEEecCCccccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSR-----LALYDIAN----TPGVAADVGHINTRSEVAGYMGNDQLGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~e-----i~L~D~~~----~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~a   97 (358)
                      +|+||+||||+|+||+++++.|++++++++     +.|+|.+.    .++.++|+.|...+ .++....+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFP-LLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCT-TEEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccc-cccccccCCchhhhcccc
Confidence            688999999889999999999999987654     56666654    46777888887643 333333334557999999


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      |+||+++|.|+++|++|.+++..|+++++++++.|.+++| +++++++|||+|+||+++   +|++++||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999995 899999999999999986   67743499999984

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.96  E-value=4.3e-29  Score=216.96  Aligned_cols=148  Identities=22%  Similarity=0.380  Sum_probs=132.5

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-------------CCCHHHHHHHHHHHhcCcce
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-------------NLADEDIKALTKRTQDGGTE  240 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-------------~~~~~~~~~l~~~v~~~~~~  240 (358)
                      |+||++||++++|+++|+++++|+++|||+||+ ++||+||++++++             .++...++++.+++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGD-SEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSSST-TCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            679999999999999999999999999999998 8999999998853             13456678999999999999


Q ss_pred             EEeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314          241 VVEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (358)
Q Consensus       241 i~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~  318 (358)
                      |++   +||++.|++|.++++++++++.+..   .+++++ +++++| ++++|||+||++|++|+++++++ +|+++|++
T Consensus        80 i~~---~kg~t~~~~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~i~~s~P~~lg~~Gv~~i~~l-~L~~~E~~  152 (170)
T d1llda2          80 IIN---GKGATNYAIGMSGVDIIEAVLHDTN---RILPVSSMLKDFHGISDICMSVPTLLNRQGVNNTINT-PVSDKELA  152 (170)
T ss_dssp             HHT---SCCSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECSSBTTBCSSEEEEEEEEETTEEECCSCC-CCCHHHHH
T ss_pred             HHh---hhccchhhhHHHHHHHHHHHHcCCC---ceeeeeccccCccCCCCeeEeeccEEcCCeeEEEecC-CCCHHHHH
Confidence            987   5689999999999999999998764   466665 567777 77999999999999999999998 89999999


Q ss_pred             HHHHHHHHHHH
Q 018314          319 GLEKLNPTFHI  329 (358)
Q Consensus       319 ~L~~s~~~L~~  329 (358)
                      +|++|++.|++
T Consensus       153 ~l~~sa~~lk~  163 (170)
T d1llda2         153 ALKRSAETLKE  163 (170)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.96  E-value=4.6e-29  Score=217.60  Aligned_cols=150  Identities=23%  Similarity=0.369  Sum_probs=129.0

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C---------CCHHHHHHHHHHHhcCcceEEe
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N---------LADEDIKALTKRTQDGGTEVVE  243 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~---------~~~~~~~~l~~~v~~~~~~i~~  243 (358)
                      |+||++||++++|+++|++|++|+++|||+||+ ++||+||++++++ +         ....+..+.....+.++..++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTHGD-CMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccCCC-ccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            789999999999999999999999999999998 8999999999864 1         3344556666666666666665


Q ss_pred             eccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       244 ~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                      .+ ++|+++|++|.++++++++++.+.+   .+++++. .+++| .+++|||+||+||++||++++++ +||++|+++|+
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~~i~~~~~---~~~~~s~~~~~~yGi~~v~~s~Pv~ig~~Gi~~v~~l-~l~~~E~~~l~  155 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMATSFLNDEK---RVIPCSVYCNGEYGLKDMFIGLPAVIGGAGIERVIEL-ELNEEEKKQFQ  155 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHHhhcccCC---ceEEeeeccccccCCCCceeeeeeEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence            44 7899999999999999999998864   4777764 57888 45799999999999999999998 89999999999


Q ss_pred             HHHHHHHH
Q 018314          322 KLNPTFHI  329 (358)
Q Consensus       322 ~s~~~L~~  329 (358)
                      +|++.|+.
T Consensus       156 ~s~~~l~~  163 (174)
T d1pzga2         156 KSVDDVMA  163 (174)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999984

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.95  E-value=6e-29  Score=215.15  Aligned_cols=152  Identities=28%  Similarity=0.352  Sum_probs=135.4

Q ss_pred             cccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----------CCCHHHHHHHHHHHhcCcceEEee
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~~  244 (358)
                      +||++|+++++|+++|++|++|+++|||+||+ +++|+||++++++          ...+++++++.+.++++++++++ 
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-   79 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGN-KMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVN-   79 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHH-
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-CcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhh-
Confidence            58999999999999999999999999999998 8999999998753          24566778899999999999887 


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~  322 (358)
                        +++++.|++|.+++.++++++.+.+   .+++++ +++++| .+|+|||+||++|++||++++++ +||++|+++|++
T Consensus        80 --~~~~~~~a~a~a~~~~~~~i~~~~~---~~~~~~v~~~g~yg~~~v~~s~Pv~lg~~Gv~~i~~l-~L~~~E~~~L~~  153 (165)
T d1t2da2          80 --LHASPYVAPAAAIIEMAESYLKDLK---KVLICSTLLEGQYGHSDIFGGTPVVLGANGVEQVIEL-QLNSEEKAKFDE  153 (165)
T ss_dssp             --HTSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHH
T ss_pred             --hccceeechhHHHHHHHHHHhhccc---cceeeeeccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHHHH
Confidence              5689999999999999999999875   466665 678988 67999999999999999999998 899999999999


Q ss_pred             HHHHHHHHhhhh
Q 018314          323 LNPTFHIRKLFQ  334 (358)
Q Consensus       323 s~~~L~~~~~~~  334 (358)
                      |++.|++.++.|
T Consensus       154 s~~~lk~~~~~A  165 (165)
T d1t2da2         154 AIAETKRMKALA  165 (165)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcC
Confidence            999999777653

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.95  E-value=6.2e-29  Score=215.99  Aligned_cols=157  Identities=20%  Similarity=0.302  Sum_probs=136.0

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC----------CCCHHHHHHHHHHHhcCcceEEe
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA----------NLADEDIKALTKRTQDGGTEVVE  243 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~----------~~~~~~~~~l~~~v~~~~~~i~~  243 (358)
                      |.||++|+++++|+++|++|++|+++|||+||+ ++||+||++++++          .++.++++++.+.++++++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEHGD-SEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSSSS-SCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccCCC-cccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            679999999999999999999999999999998 8999999999863          25666788899999999988877


Q ss_pred             eccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          244 AKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       244 ~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                         ++|++.|++|.++.+++++++.+..   .+++++ +++++| .+++|||+||++|++|+++++++ +|+++|+++|+
T Consensus        80 ---~k~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~~~~g~~~~~~S~Pv~lg~~Gv~~v~~l-~Ls~~E~~~l~  152 (171)
T d1ez4a2          80 ---LKGATFYGIGTALMRISKAILRDEN---AVLPVGAYMDGQYGLNDIYIGTPAIIGGTGLKQIIES-PLSADELKKMQ  152 (171)
T ss_dssp             ---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             ---hhhhHhHHHHHHHHHHHHHHhccCC---ceEEEEEeeccccCccceeeeEEEEEcCCcEEEEeCC-CCCHHHHHHHH
Confidence               5689999999999999999998864   466664 578888 67999999999999999999998 89999999999


Q ss_pred             HHHHHHHHHhhhhHHHhc
Q 018314          322 KLNPTFHIRKLFQILQFF  339 (358)
Q Consensus       322 ~s~~~L~~~~~~~~~~~~  339 (358)
                      +|++.|++ ...+.|+.+
T Consensus       153 ~s~~~l~~-~i~~~l~~l  169 (171)
T d1ez4a2         153 DSAATLKK-VLNDGLAEL  169 (171)
T ss_dssp             HHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHh
Confidence            99999983 333344433

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.95  E-value=9.6e-29  Score=218.10  Aligned_cols=154  Identities=23%  Similarity=0.164  Sum_probs=130.7

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCC-C----CCHHH--HHHHHHHHhcCcceEEeec
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKA-N----LADED--IKALTKRTQDGGTEVVEAK  245 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~-~----~~~~~--~~~l~~~v~~~~~~i~~~~  245 (358)
                      |.||++||+++||+++|+++++|+. +|||+||+ ++||+||++++++ +    .+++.  .+++.+.++++++++++.+
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeHGd-s~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcCCC-cEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999975 68899999 8999999999864 1    23333  4789999999999999974


Q ss_pred             cCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCC-C--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQST-V--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       246 ~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~-~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                        ++++++|+|.|+++++++|+++.+.. .+++++ +++|+ |  ++|+|||+||++|++|+++++...+|+++|+++|+
T Consensus        80 --g~s~~~s~A~A~~~~~~ai~~~~~~~-~~~s~~v~~~g~~YGi~~~v~~s~Pv~ig~~G~~~iv~~l~L~~~e~~~l~  156 (188)
T d7mdha2          80 --GRSSAASTAVSIADAIKSLVTPTPEG-DWFSTGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELATDVSNDDFLWERIK  156 (188)
T ss_dssp             --SSCCHHHHHHHHHHHHHHHHSCCCTT-CCEEEEEECTTCSSCCCSSSEEEEEEECCSSSCCEECCCCCCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHHHHHHHHcCCCCC-ceEEEEEEeCCCccCCCCCeEEEEeeEECCCccEEEeCCCCCCHHHHHHHH
Confidence              35677789999999999999998643 356665 46775 7  57999999999999999999763399999999999


Q ss_pred             HHHHHHHHHh
Q 018314          322 KLNPTFHIRK  331 (358)
Q Consensus       322 ~s~~~L~~~~  331 (358)
                      +|+++|++++
T Consensus       157 ~S~~eL~~e~  166 (188)
T d7mdha2         157 KSEAELLAEK  166 (188)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999664

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.5e-28  Score=211.38  Aligned_cols=156  Identities=49%  Similarity=0.728  Sum_probs=136.1

Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCCCCHHHHHHHHHHHhcCcceEEeeccCCCCcc
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVEAKAGKGSAT  252 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~~~~~~~~~l~~~v~~~~~~i~~~~~gkg~t~  252 (358)
                      +|.||++||++++|+++|++|++|+++|+|+||+++++|++|++. +..++..+++++.+.+++++.++++.+.+++++.
T Consensus         1 ~T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~-~~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~   79 (167)
T d2cmda2           1 VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVP-GVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSAT   79 (167)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCT-TCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeeccccc-CCCCcHHHHHHHHHHHHhhhhhhhhhhccCcchH
Confidence            378999999999999999999999999999999866677666654 3568888999999999999999999887889999


Q ss_pred             chHHHHHHHHHHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 018314          253 LSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPTFHI  329 (358)
Q Consensus       253 ~s~A~a~~~li~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~L~~  329 (358)
                      +|+|.++++++.+|+.+.++...+..+++...+.+.++|||+||++|++|+++++++++|+++|+++|++|++.|+.
T Consensus        80 ~~~a~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~s~P~~ig~~Gv~~v~~l~~L~~~E~~~l~~s~~~lk~  156 (167)
T d2cmda2          80 LSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVEERKSIGTLSAFEQNALEGMLDTLKK  156 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSSCEEEEEEECCCSSCSEEEEEEEEETTEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCceEEEEEcccccccCCCccccccEEEeCCceEEEeeCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998776555554455544446689999999999999999999867999999999999999983

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=8e-29  Score=217.17  Aligned_cols=156  Identities=23%  Similarity=0.215  Sum_probs=131.6

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEE-eecCCcccccccccccCCC-CC----------CHHHHHHHHHHHhcCcceE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVV-GGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEV  241 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~-G~hg~~~~vp~~S~~~v~~-~~----------~~~~~~~l~~~v~~~~~~i  241 (358)
                      |.||++||++++|+++|++|++|+++|+ |+||+ ++||+||++++++ ++          +....+++.+.+++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeHG~-s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSS-TQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcCCC-cccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999988555 99998 8999999999864 22          2233578888999999999


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecC-CC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQS-TV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQ  317 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~-~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~  317 (358)
                      ++.+  +++++|++|.|+++++++|+++.++.. +++++ +.+| +|  ++++|||+||++|++||+++.++ +||++|+
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~i~~~~~~~~-~~s~~v~~~g~~yGi~~~v~~s~P~~lg~~Gv~~v~~l-~L~~~E~  155 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRDIWFGTPEGE-FVSMGIISDGNSYGVPDDLLYSFPVTIKDKTWKIVEGL-PINDFSR  155 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHHHHHCCCTTC-CEEEEEECTTCSSSCCSSCEEEEEEEEETTEEEECCCC-CCCHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHHHHhhcccCC-ceeEEEEccCcccCCccceEEeeeEEEcCCcEEEEeCC-CCCHHHH
Confidence            8864  467889999999999999999887543 45554 4566 56  68999999999999999999999 8999999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 018314          318 EGLEKLNPTFHIRKLFQ  334 (358)
Q Consensus       318 ~~L~~s~~~L~~~~~~~  334 (358)
                      ++|++|++.|++++..+
T Consensus       156 ~~l~~Sa~~L~~~~~~~  172 (179)
T d5mdha2         156 EKMDLTAKELAEEKETA  172 (179)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999665543

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.95  E-value=9.1e-29  Score=214.74  Aligned_cols=149  Identities=23%  Similarity=0.340  Sum_probs=130.1

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  241 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++ +           ++.++++++.+++++.++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~Hg~-t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGD-SQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCSSS-SCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccCCC-CCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            679999999999999999999999999999998 8999999998853 1           22334578888999988888


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEG  319 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~  319 (358)
                      ++   +++++.|++|.++++++++++.+.+   .++|++ +++|+| .+++|||+||++|++||++++++ +||++|+++
T Consensus        80 ~~---~~~s~~~a~a~~~~~~~~~i~~~~~---~~~~~~~~~~g~yg~~~i~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~  152 (169)
T d1y6ja2          80 IK---NKGATYYGIAVSINTIVETLLKNQN---TIRTVGTVINGMYGIEDVAISLPSIVNSEGVQEVLQF-NLTPEEEEA  152 (169)
T ss_dssp             HH---HTSCCCHHHHHHHHHHHHHHHHTCC---CEECCEEEECSBTTBCSEEEECCEEEETTEEEECCCC-CCCHHHHHH
T ss_pred             hh---hhhhhhhHHHHHHHHHHHHhccCCC---CceeeeeeeccccCCcccceeeeeEEcCCcEEEEecC-CCCHHHHHH
Confidence            77   5689999999999999999999864   477775 578888 56999999999999999999998 899999999


Q ss_pred             HHHHHHHHHHH
Q 018314          320 LEKLNPTFHIR  330 (358)
Q Consensus       320 L~~s~~~L~~~  330 (358)
                      |++|++.|+.+
T Consensus       153 l~~s~~~lk~~  163 (169)
T d1y6ja2         153 LRFSAEQVKKV  163 (169)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999843

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=5.3e-28  Score=210.27  Aligned_cols=148  Identities=25%  Similarity=0.365  Sum_probs=131.4

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-----------CCCHHHHHHHHHHHhcCcceEE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-----------NLADEDIKALTKRTQDGGTEVV  242 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-----------~~~~~~~~~l~~~v~~~~~~i~  242 (358)
                      |.||++||++++|+++|++|++|+++|||+||+ ++||+||++++++           .++.+.++++.+.+++++++++
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGD-SEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCSST-TCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecCCC-CcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            579999999999999999999999999999998 8999999998853           2556677899999999999998


Q ss_pred             eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (358)
Q Consensus       243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L  320 (358)
                      +   +++++.|++|.++++++.+++.+.+   .+.+++ +.+++| .+++|||+||++|++||++++++ +|+++|+++|
T Consensus        81 ~---~~~~~~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~v~~s~P~~lg~~Gv~~v~~l-~Ls~~E~~~l  153 (172)
T d1a5za2          81 E---RKGATHYAIALAVADIVESIFFDEK---RVLTLSVYLEDYLGVKDLCISVPVTLGKHGVERILEL-NLNEEELEAF  153 (172)
T ss_dssp             H---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEESSBTTBCSEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             e---ccccchhhHHHHHHHHHHHHHhhcc---cceeeecccccccccCCeeEeeeEEEcCCceEEEeCC-CCCHHHHHHH
Confidence            7   4588999999999999999998754   466665 567777 67899999999999999999998 8999999999


Q ss_pred             HHHHHHHHH
Q 018314          321 EKLNPTFHI  329 (358)
Q Consensus       321 ~~s~~~L~~  329 (358)
                      ++|++.|+.
T Consensus       154 ~~sa~~lk~  162 (172)
T d1a5za2         154 RKSASILKN  162 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999973

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.95  E-value=5.3e-28  Score=209.44  Aligned_cols=148  Identities=20%  Similarity=0.311  Sum_probs=123.1

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCCC----C---CHHHHHHHHHHHhcCcceEEeecc
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKAN----L---ADEDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~~----~---~~~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ ++||+||++++++.    +   .....+++..+++++++.+++   
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   78 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEHGD-SMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIR---   78 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCC-ccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHH---
Confidence            689999999999999999999999999999998 89999999988641    1   112357788888888888877   


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEe-eeecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVEC-SFVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~-s~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s  323 (358)
                      .++++.+++|.+++.++++++.+.+   .++++ +++.++|  ++|+|||+||++|++||++++++ +||++|+++|++|
T Consensus        79 ~k~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~s~Pv~lg~~Gv~~i~~l-~Ls~~E~~~l~~S  154 (168)
T d1hyea2          79 LKGGSEFGPAAAILNVVRCIVNNEK---RLLTLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSI-ELDKDEIIAFRKS  154 (168)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCC---EEEEEEEEEESSSSSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHH
T ss_pred             hccCccccchhhhhHHHHhhhccCC---CeEEEEEEEecccCCcCCEEEeeceEEcCCcEEEEecC-CCCHHHHHHHHHH
Confidence            4578889999999999999998764   35544 4567765  67999999999999999999998 8999999999999


Q ss_pred             HHHHHH
Q 018314          324 NPTFHI  329 (358)
Q Consensus       324 ~~~L~~  329 (358)
                      ++.|+.
T Consensus       155 a~~lk~  160 (168)
T d1hyea2         155 AEIIKK  160 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999984

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.94  E-value=6.7e-28  Score=209.50  Aligned_cols=147  Identities=21%  Similarity=0.264  Sum_probs=129.8

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C-----------CCHHHHHHHHHHHhcCcceE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N-----------LADEDIKALTKRTQDGGTEV  241 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~-----------~~~~~~~~l~~~v~~~~~~i  241 (358)
                      |.||++|+++++|+++|+++++|+++|||+||+ ++||+||++++++ +           .+.+.++++.+++++.+.++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEHGD-SSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCSST-TCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccCCC-cccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            679999999999999999999999999999998 8999999999853 1           22334678888999888888


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~  318 (358)
                      ++   +++++.+++|.++++++++++.+.+   .++|+++ ++|+|  ++++|||+||++|++||++++++ +||++|++
T Consensus        82 ~~---~~~~s~~a~a~~~~~~~~~~~~~~~---~v~~~~~~~~g~YGi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~  154 (172)
T d1i0za2          82 IK---LKGYTNWAIGLSVADLIESMLKNLS---RIHPVSTMVKGMYGIENEVFLSLPCILNARGLTSVINQ-KLKDDEVA  154 (172)
T ss_dssp             HH---HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHH
T ss_pred             ee---cccccchHHHHHHHHHHHHHhcCCC---cccccceeccCcCCCcCCEEEEEEEEecCCcEEEEeCC-CCCHHHHH
Confidence            77   4578999999999999999998753   5788864 68888  56899999999999999999998 99999999


Q ss_pred             HHHHHHHHHH
Q 018314          319 GLEKLNPTFH  328 (358)
Q Consensus       319 ~L~~s~~~L~  328 (358)
                      +|++|++.|+
T Consensus       155 ~l~~Sa~~l~  164 (172)
T d1i0za2         155 QLKKSADTLW  164 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999997

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.94  E-value=1.5e-27  Score=204.71  Aligned_cols=151  Identities=25%  Similarity=0.401  Sum_probs=132.4

Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC---CCCHHHHHHHHHHHhcCcceEEeeccC
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA---NLADEDIKALTKRTQDGGTEVVEAKAG  247 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~---~~~~~~~~~l~~~v~~~~~~i~~~~~g  247 (358)
                      || |+||++|+++++|+++|+++++|+++|||+||+ +++|+||++.+++   .+..++++++.++++..+.++.+   +
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~   75 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEHGD-AQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIE---R   75 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECSST-TEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHT---T
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCCCC-ceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHH---h
Confidence            46 889999999999999999999999999999998 8999999999864   25566778888888888888866   5


Q ss_pred             CCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHH
Q 018314          248 KGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNP  325 (358)
Q Consensus       248 kg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~  325 (358)
                      ++++.+++|.++++++.+++.+..   .+++++ ++.++| ++++|||+||++|++|+++++++ +||++|+++|++|++
T Consensus        76 ~~~s~~~~a~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~S~Pv~ig~~Gv~~v~~l-~l~~~E~~~L~~s~~  151 (161)
T d1o6za2          76 KGATEWGPARGVAHMVEAILHDTG---EVLPASVKLEGEFGHEDTAFGVPVSLGSNGVEEIVEW-DLDDYEQDLMADAAE  151 (161)
T ss_dssp             TSSCCHHHHHHHHHHHHHHHTTCC---CEEEEEEEEESGGGCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHhhHhhhHhhhhccc---cceeecccccccccccCceeeeeeEEcCCCEEEEeCC-CCCHHHHHHHHHHHH
Confidence            688999999999999999998764   355554 567776 67999999999999999999998 999999999999999


Q ss_pred             HHHHH
Q 018314          326 TFHIR  330 (358)
Q Consensus       326 ~L~~~  330 (358)
                      .|+.+
T Consensus       152 ~L~~~  156 (161)
T d1o6za2         152 KLSDQ  156 (161)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99843

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.94  E-value=1.6e-27  Score=206.16  Aligned_cols=153  Identities=22%  Similarity=0.322  Sum_probs=130.9

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC----------CHHHHHHHHHHHhcCcceEE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----------ADEDIKALTKRTQDGGTEVV  242 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~----------~~~~~~~l~~~v~~~~~~i~  242 (358)
                      |.||++||+.++|+++|+++++|+++|||+||+ ++||+||++++++ ++          ..+..+++.+.++..++++.
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGD-TELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCSST-TCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-ccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            679999999999999999999999999999998 8999999998853 11          12335678888888888877


Q ss_pred             eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (358)
Q Consensus       243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L  320 (358)
                      .   .++++.++++.++.+++.+++.+.+   .+++++ +..++| ++++|||+||++|++||++++++ +||++|+++|
T Consensus        80 ~---~~~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~yg~~~v~~s~Pv~lg~~Gv~~v~~l-~Ls~~E~~~L  152 (168)
T d1ldna2          80 E---KKGATYYGIAMGLARVTRAILHNEN---AILTVSAYLDGLYGERDVYIGVPAVINRNGIREVIEI-ELNDDEKNRF  152 (168)
T ss_dssp             H---HHSCCCHHHHHHHHHHHHHHHTTCC---EEEEEEEEEESTTSCEEEEEEEEEEEETTEEEEECCC-CCCHHHHHHH
T ss_pred             H---hhccccchHHHHHhhHHHhhhcccc---eeeeeeeeeccccCCCCeeecceEEEcCCeEEEEeCC-CCCHHHHHHH
Confidence            6   4578999999999999999998754   466665 467777 67999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHhhhh
Q 018314          321 EKLNPTFHIRKLFQ  334 (358)
Q Consensus       321 ~~s~~~L~~~~~~~  334 (358)
                      ++|++.|+.....|
T Consensus       153 ~~s~~~lk~~i~~a  166 (168)
T d1ldna2         153 HHSAATLKSVLARA  166 (168)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999665544

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.94  E-value=2.5e-27  Score=204.31  Aligned_cols=148  Identities=21%  Similarity=0.249  Sum_probs=126.8

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC----C--HHHHHHHHHHHhcCcceEEeecc
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL----A--DEDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~----~--~~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      |.||++||++++|+++|++|++|+++|||+||+ ++||+||++++++ ++    .  +..++++..++++++++|++   
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~---   77 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGN-SQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLN---   77 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCTTT-TCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHH---
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHH---
Confidence            579999999999999999999999999999998 8999999999864 21    2  22367999999999999987   


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEeeeecCCCCCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKLNPT  326 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~~~~~~~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s~~~  326 (358)
                      +||++.|++|.++..++.++..+.+   .+++++...+  .+++|||+||++|++||++++++ +|+++|+++|++|++.
T Consensus        78 ~kg~~~~~~a~~~~~~~~~~~~~~~---~~~~~s~~~~--~~~~~~s~Pv~ig~~Gv~~v~~l-~Ls~~E~~~l~~s~~~  151 (163)
T d1hyha2          78 GKGYTSYGVATSAIRIAKAVMADAH---AELVVSNRRD--DMGMYLSYPAIIGRDGVLAETTL-DLTTDEQEKLLQSRDY  151 (163)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECT--TTCSEEEEEEEEETTEEEEECCC-CCCHHHHHHHHHHHHH
T ss_pred             HHHhHHHhHHHHhhHHHHHhcCCcc---ceeeeceecC--CcceEEEeEEEEcCCeEEEEecC-CCCHHHHHHHHHHHHH
Confidence            4589999999999999999998864   4555554322  35799999999999999999998 8999999999999999


Q ss_pred             HHHHh
Q 018314          327 FHIRK  331 (358)
Q Consensus       327 L~~~~  331 (358)
                      |+.+.
T Consensus       152 l~~~~  156 (163)
T d1hyha2         152 IQQRF  156 (163)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99443

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.94  E-value=1.9e-27  Score=206.01  Aligned_cols=147  Identities=22%  Similarity=0.321  Sum_probs=123.3

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC--------CHHHHHHHHHHHhcCcceEEee
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL--------ADEDIKALTKRTQDGGTEVVEA  244 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~--------~~~~~~~l~~~v~~~~~~i~~~  244 (358)
                      |.||++||+++||+++|+++++|+++|||+||+ +++|+||.+.+++ ++        +.+...++...++.++.++.. 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   80 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGD-SVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIK-   80 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCSST-TCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHH-
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCCCc-cchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEec-
Confidence            679999999999999999999999999999998 8999999998853 11        122233455555555555544 


Q ss_pred             ccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH
Q 018314          245 KAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE  321 (358)
Q Consensus       245 ~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~  321 (358)
                        +++++.+++|.++++++.+++.+.+   .+++++ +++|+|  ++++|||+||++|++||++++++ +|+++|+++|+
T Consensus        81 --~~~s~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~lg~~Gv~~v~~l-~L~~~E~~~l~  154 (169)
T d1ldma2          81 --LKGYTSWAIGLSVADLAETIMKNLC---RVHPVSTMVKDFYGIKDNVFLSLPCVLNDHGISNIVKM-KLKPNEEQQLQ  154 (169)
T ss_dssp             --HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSCCEEEEEEEEETTEEEEECCC-CCCHHHHHHHH
T ss_pred             --cccchhhHHHHHHhhhhheecCCCC---ceeeeeeecccccCCcCCceEEeeEEEcCCcEEEEecC-CCCHHHHHHHH
Confidence              4578999999999999999998864   477775 568888  57899999999999999999998 89999999999


Q ss_pred             HHHHHHH
Q 018314          322 KLNPTFH  328 (358)
Q Consensus       322 ~s~~~L~  328 (358)
                      +|++.|+
T Consensus       155 ~s~~~l~  161 (169)
T d1ldma2         155 KSATTLW  161 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999997

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=6.9e-27  Score=202.94  Aligned_cols=137  Identities=20%  Similarity=0.210  Sum_probs=109.8

Q ss_pred             CceEEEEcCCCChHHHH--HHHHHhCCC--CcEEEEEecCC--cHHHHHHhhcCC------CCccEEEEecCCccccccC
Q 018314           28 DRKVAVLGAAGGIGQPL--ALLMKLNPL--VSRLALYDIAN--TPGVAADVGHIN------TRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~--a~~l~~~~~--~~ei~L~D~~~--~~~~~~dl~~~~------~~~~v~~~~~~~d~~~al~   95 (358)
                      .+||+|||| |++|.+.  +.++.....  .+||+|+|+++  .++.++|+.|..      .+.++..   ++|++++++
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~---~td~~~al~   76 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL---TLDRRRALD   76 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHT
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee---cCCchhhcC
Confidence            479999998 9888554  445555442  46999999988  568888886642      2334443   367789999


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHH--------------------HHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHH
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDL--------------------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIA  155 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~--------------------~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~  155 (358)
                      |||+||+++|.+++++++|.++                    +.+|+++++++++.|+++|||+|+|++|||+|+||+++
T Consensus        77 gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvdv~t~~~  156 (169)
T d1s6ya1          77 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAV  156 (169)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHH
T ss_pred             CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHHHHHHHH
Confidence            9999999999887776665554                    57999999999999999999999999999999999876


Q ss_pred             HHHHHHhCCCCCCceEeec
Q 018314          156 AEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       156 ~~~~~~sg~~~~~kviG~t  174 (358)
                         +|.   +|++||||+|
T Consensus       157 ---~k~---~p~~kviGlC  169 (169)
T d1s6ya1         157 ---LRY---TKQEKVVGLC  169 (169)
T ss_dssp             ---HHH---CCCCCEEECC
T ss_pred             ---HHH---CCCCCEEeeC
Confidence               565   5789999997

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.93  E-value=8.2e-28  Score=209.12  Aligned_cols=148  Identities=24%  Similarity=0.406  Sum_probs=129.2

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-C----------CCHHHHHHHHHHHhcCcceEE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-N----------LADEDIKALTKRTQDGGTEVV  242 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~----------~~~~~~~~l~~~v~~~~~~i~  242 (358)
                      |.||++||++++|+++|+++++|+++|||+||+ +++|+||++++++ +          +..+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~Hg~-~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGD-TEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSSSS-SCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCCCC-cceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            679999999999999999999999999999998 8999999998853 1          122234677788888999988


Q ss_pred             eeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC-CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHH
Q 018314          243 EAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV-TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGL  320 (358)
Q Consensus       243 ~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~-~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L  320 (358)
                      +   ++|++.|++|.++++++++++.+..   .+++++ +++|+| .+++|||+||++|++|+++++++ +|+++|+++|
T Consensus        80 ~---~kg~~~~a~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~~~s~P~~lg~~Gv~~i~~l-~L~~~E~~~l  152 (172)
T d1llca2          80 K---LKGATFYGIATALARISKAILNDEN---AVLPLSVYMDGQYGINDLYIGTPAVINRNGIQNILEI-PLTDHEEESM  152 (172)
T ss_dssp             S---SSSCTTHHHHHHHHHHHHHHHHTCC---CCEECCCCCSSSSSCCSSCCBCEEEEETTEEEEECCC-CCTTHHHHHH
T ss_pred             H---hhhhhhhhhHHHHHHHHHHHhcCCC---CccceeeeecCccCcccceEEEEEEEcCCceEEEecC-CCCHHHHHHH
Confidence            7   5789999999999999999999865   366665 678888 56899999999999999999998 8999999999


Q ss_pred             HHHHHHHHH
Q 018314          321 EKLNPTFHI  329 (358)
Q Consensus       321 ~~s~~~L~~  329 (358)
                      ++|++.|++
T Consensus       153 ~~s~~~lk~  161 (172)
T d1llca2         153 QKSASQLKK  161 (172)
T ss_dssp             HTTTTTTTT
T ss_pred             HHHHHHHHH
Confidence            999999983

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.8e-26  Score=198.86  Aligned_cols=147  Identities=24%  Similarity=0.345  Sum_probs=125.7

Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEEeecCCcccccccccccCCC-CC-----------CHHHHHHHHHHHhcCcceE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVVGGHAGITILPLFSQATPKA-NL-----------ADEDIKALTKRTQDGGTEV  241 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~G~hg~~~~vp~~S~~~v~~-~~-----------~~~~~~~l~~~v~~~~~~i  241 (358)
                      |.||++|+++++|+++|++|++|+++|||+||+ +++|+||++++++ ++           ..+..+++...++..+.++
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~Hs~-~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGD-SSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECSSS-CEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCCCC-ccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            579999999999999999999999999999999 8999999999853 21           1123456777777777776


Q ss_pred             EeeccCCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH
Q 018314          242 VEAKAGKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE  318 (358)
Q Consensus       242 ~~~~~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~  318 (358)
                      ..   +++++.+++|.++..++.+++.+.+   .+++++ +.+++|  ++++|||+||++|++||++++++ +|+++|++
T Consensus        82 ~~---~k~~s~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~g~ygi~~~i~~s~Pv~ig~~Gv~~v~~l-~L~~~E~~  154 (172)
T d2ldxa2          82 LD---MKGYTSWAIGLSVTDLARSILKNLK---RVHPVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKV-NMTAEEEG  154 (172)
T ss_dssp             HH---HHSSCCHHHHHHHHHHHHHHHTTCC---EEEEEEEECTTSTTCCSSCEEEEEEEEETTEEEEEECC-CCCHHHHH
T ss_pred             hh---cccchhHHHHHHHhHHHHhhcCCCc---cceeeeeecccccCCcCCeEEEEEEEEcCCCEEEEecC-CCCHHHHH
Confidence            65   4578999999999999999998753   466665 467888  57999999999999999999998 99999999


Q ss_pred             HHHHHHHHHH
Q 018314          319 GLEKLNPTFH  328 (358)
Q Consensus       319 ~L~~s~~~L~  328 (358)
                      +|++|++.|+
T Consensus       155 ~l~~s~~~lk  164 (172)
T d2ldxa2         155 LLKKSADTLW  164 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999997

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.1e-25  Score=195.69  Aligned_cols=154  Identities=23%  Similarity=0.216  Sum_probs=121.6

Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCceE-EEeecCCcccccccccccCCC-C---C-CHH-HHHHHHHHHhcCcceEEeec
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVNVP-VVGGHAGITILPLFSQATPKA-N---L-ADE-DIKALTKRTQDGGTEVVEAK  245 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~-v~G~hg~~~~vp~~S~~~v~~-~---~-~~~-~~~~l~~~v~~~~~~i~~~~  245 (358)
                      +|.||++||++++|+++|++|++|+++ |||+||+ +++|+||++++++ +   + .+. ...+...+..+.+..++.. 
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeHG~-s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSS-TMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQA-   78 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSST-TCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHH-
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEecCc-cEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHH-
Confidence            478999999999999999999999886 6799999 8999999999864 2   2 222 2233333334444444443 


Q ss_pred             cCCCCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHH
Q 018314          246 AGKGSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEK  322 (358)
Q Consensus       246 ~gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~  322 (358)
                       .+++++|++|.++++++++++.+.+.. .++|++. .+|+|  ++++++|+||+++++|++.+.++ +||++|+++|++
T Consensus        79 -~~~~s~~~~a~a~~~~~~~~~~~~~~~-~~~~~~v~~~g~YGi~~~~~~s~Pvi~~~gg~~~v~~l-~L~~~E~~~l~~  155 (173)
T d1y7ta2          79 -RGASSAASAANAAIEHIRDWALGTPEG-DWVSMAVPSQGEYGIPEGIVYSFPVTAKDGAYRVVEGL-EINEFARKRMEI  155 (173)
T ss_dssp             -HSSCCHHHHHHHHHHHHHHHHTBCCTT-CCEEEEEECSSGGGCCTTSEEEEEEEEETTEEEECCCC-CCCHHHHHHHHH
T ss_pred             -hccCchhhHHHHHHHHHHHHhcccCCC-CceeeEEEeccccCCccceeEeeeEEEeCCeEEEecCC-CCCHHHHHHHHH
Confidence             357899999999999999999976543 5788865 68888  68999999999987776666667 899999999999


Q ss_pred             HHHHHHHHh
Q 018314          323 LNPTFHIRK  331 (358)
Q Consensus       323 s~~~L~~~~  331 (358)
                      |+++|+++.
T Consensus       156 s~~~L~~~~  164 (173)
T d1y7ta2         156 TAQELLDEM  164 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998543

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1.2e-25  Score=194.42  Aligned_cols=136  Identities=20%  Similarity=0.236  Sum_probs=109.2

Q ss_pred             CCceEEEEcCCCChHHHHHH--HHHhCCC--CcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLAL--LMKLNPL--VSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~--~l~~~~~--~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (358)
                      +..||+|||| |++|.+.+.  .+.....  .+||+|+|+++  +++.+.++.+..    .+.++..   ++|++++++|
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~eal~~   77 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAA---TTDPEEAFTD   77 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEE---ESCHHHHHSS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEe---cCChhhccCC
Confidence            5679999998 999977543  3333332  47999999998  555566666542    2335554   3577899999


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLF--------------------NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA  156 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~--------------------~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~  156 (358)
                      ||+||+++|.++++|++|.+++                    .+|+++++++++.|+++|||||+|++|||+|++|+++ 
T Consensus        78 AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvdv~t~~~-  156 (167)
T d1u8xx1          78 VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEAT-  156 (167)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHH-
T ss_pred             CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH-
Confidence            9999999999999988888775                    4679999999999999999999999999999999987 


Q ss_pred             HHHHHhCCCCCCceEe
Q 018314          157 EVFKKAGTYNEKKLFG  172 (358)
Q Consensus       157 ~~~~~sg~~~~~kviG  172 (358)
                        +++   +|++|||.
T Consensus       157 --~k~---~P~~rVI~  167 (167)
T d1u8xx1         157 --RRL---RPNSKILN  167 (167)
T ss_dssp             --HHH---STTCCEEE
T ss_pred             --HHH---CCcccccC
Confidence              565   68899984

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=3.1e-26  Score=197.48  Aligned_cols=135  Identities=20%  Similarity=0.229  Sum_probs=103.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh--C--CCCcEEEEEecCC-cHHHHHHhhcCCC--CccEEEEecCCccccccCCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKL--N--PLVSRLALYDIAN-TPGVAADVGHINT--RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~--~--~~~~ei~L~D~~~-~~~~~~dl~~~~~--~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      |||+|||| |++|.+.++....  .  ...+||+|+|+++ ..+.+.|+.|...  ..++..   +++.+++++|||+||
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t~~~~~~l~~aDvVV   76 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---SDTFEGAVVDAKYVI   76 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---CSSHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---ecCcccccCCCCEEE
Confidence            79999998 9999888764333  2  2367999999987 3345667766532  234443   345689999999999


Q ss_pred             EcCCCCCCCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314          102 IPAGVPRKPGMTRDDLF--------------------NINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~--------------------~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                      +++|.+++++++|.+++                    .++++++.++.+ +.++|||+|+|++|||+|++|+++   ++.
T Consensus        77 ita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvdiit~~~---~~~  152 (162)
T d1up7a1          77 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSGHITEFV---RNY  152 (162)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHHHHHHHH---HHT
T ss_pred             EecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHHHHHHHH---HHh
Confidence            99999887777665554                    566777877765 777899999999999999999876   554


Q ss_pred             hCCCCCCceEeec
Q 018314          162 AGTYNEKKLFGVT  174 (358)
Q Consensus       162 sg~~~~~kviG~t  174 (358)
                         +|++|+||+|
T Consensus       153 ---~p~~rviGlC  162 (162)
T d1up7a1         153 ---LEYEKFIGLC  162 (162)
T ss_dssp             ---TCCSSEEECC
T ss_pred             ---CCCCCEEeeC
Confidence               5678999997

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.91  E-value=1.1e-24  Score=188.99  Aligned_cols=151  Identities=21%  Similarity=0.197  Sum_probs=113.1

Q ss_pred             cccHHHHHHHHHHHcCCCCCCCce-EEEeecCCcccccccccccCCCC-C-----CH-HHHHHHHHHHhcCcceEEeecc
Q 018314          175 TLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAGITILPLFSQATPKAN-L-----AD-EDIKALTKRTQDGGTEVVEAKA  246 (358)
Q Consensus       175 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~~~~vp~~S~~~v~~~-~-----~~-~~~~~l~~~v~~~~~~i~~~~~  246 (358)
                      .||++||++++|+++|++|++|++ +|||+||+ ++||+||++++++. +     ++ ...+++.+.+++++..+.+.+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~GehG~-s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNHSP-TMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCSST-TCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcCCC-cEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            389999999999999999999986 67799998 89999999998642 1     11 123455555555555555543 


Q ss_pred             CCCCccchHHHHHHHHHHHHHccCCCCCcEEEee-eecCCC--CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHHHH
Q 018314          247 GKGSATLSMAYAGAIFADACLKGLNGVPDVVECS-FVQSTV--TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLEKL  323 (358)
Q Consensus       247 gkg~t~~s~A~a~~~li~ail~~~~~~~~v~~~s-~~~~~~--~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~~s  323 (358)
                      +++++.++.+.++..+..++ .+..+  .+++++ +++|+|  ++++|||+||++|++||+.+.++ +|+++|+++|++|
T Consensus        80 ~~~~~~~~~~a~~~~~~~~i-~~~~~--~~~~~s~~~~g~yg~~~gi~fS~Pv~ig~~gve~v~~l-~L~~~e~~~l~~s  155 (171)
T d1b8pa2          80 GVSSAASAANAAIDHIHDWV-LGTAG--KWTTMGIPSDGSYGIPEGVIFGFPVTTENGEYKIVQGL-SIDAFSQERINVT  155 (171)
T ss_dssp             SSCCHHHHHHHHHHHHHHHH-HCCTT--CCEEEEEECCSGGGCCTTCEEEEEEEEETTEEEECCCC-CCCHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHHHH-hCCCc--cceeEEEEeccccccccceEEEEEEEEeCCeEEEEeCC-CCCHHHHHHHHHH
Confidence            44444444444444444444 44332  366776 468887  68999999999999999999988 8999999999999


Q ss_pred             HHHHHHHh
Q 018314          324 NPTFHIRK  331 (358)
Q Consensus       324 ~~~L~~~~  331 (358)
                      +++|++++
T Consensus       156 ~~~L~~e~  163 (171)
T d1b8pa2         156 LNELLEEQ  163 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999664

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.6e-24  Score=185.97  Aligned_cols=135  Identities=22%  Similarity=0.235  Sum_probs=106.8

Q ss_pred             CCceEEEEcCCCChHHHHHH--HHHhCC-C-CcEEEEEecCC--cHHHHHHhhcCC----CCccEEEEecCCccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLAL--LMKLNP-L-VSRLALYDIAN--TPGVAADVGHIN----TRSEVAGYMGNDQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~--~l~~~~-~-~~ei~L~D~~~--~~~~~~dl~~~~----~~~~v~~~~~~~d~~~al~~   96 (358)
                      +.|||+|||| |++|++.+.  .++... + .+||+|+|+++  +++.+.|+.|..    ...++..   ++|++++++|
T Consensus         1 p~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~---~td~~eaL~d   76 (171)
T d1obba1           1 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEK---TMNLDDVIID   76 (171)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEE---ESCHHHHHTT
T ss_pred             CCcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEE---eCChhhcccC
Confidence            4689999998 999988654  344443 2 46999999997  567778887743    2345554   4678999999


Q ss_pred             CCEEEEcCCC------------------CCCCCCCHHHH--------HHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314           97 SDVVIIPAGV------------------PRKPGMTRDDL--------FNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus        97 aDiVIi~ag~------------------~~~~g~~r~~~--------~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      ||+||++++.                  +++++++|.+.        +.+|+++++++++.|+++|||+|+|++|||+|+
T Consensus        77 ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvdv  156 (171)
T d1obba1          77 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFE  156 (171)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHH
T ss_pred             CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHHH
Confidence            9999987653                  45556666554        579999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhCCCCCCceEe
Q 018314          151 TVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       151 ~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +|+++   ++++|    .|+||
T Consensus       157 ~t~~~---~k~~~----~k~iG  171 (171)
T d1obba1         157 GTTLV---TRTVP----IKAVG  171 (171)
T ss_dssp             HHHHH---HHHSC----SEEEE
T ss_pred             HHHHH---HHhcC----CCccC
Confidence            99886   67776    48887

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.4e-09  Score=92.95  Aligned_cols=119  Identities=18%  Similarity=0.256  Sum_probs=84.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-c--HHHH---H---HhhcCCC--------------CccEEEEe
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-T--PGVA---A---DVGHINT--------------RSEVAGYM   85 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~--~~~~---~---dl~~~~~--------------~~~v~~~~   85 (358)
                      +||+|||| |.||+.+|..++..|+  +++|||+++ .  .+..   .   .+.....              ..++... 
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~-   80 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATS-   80 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEE-
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcccc-
Confidence            49999998 9999999999999998  999999986 1  1110   0   1111010              1245543 


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc-hHHHHHHHHHhCC
Q 018314           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST-VPIAAEVFKKAGT  164 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~-t~~~~~~~~~sg~  164 (358)
                        +|+.++++|||+|+.+.              .+|.++.+++...+++++|... |+.||...+. +.++    ...  
T Consensus        81 --~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~-ilasnTS~l~i~~la----~~~--  137 (192)
T d1f0ya2          81 --TDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHT-IFASNTSSLQITSIA----NAT--  137 (192)
T ss_dssp             --SCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTC-EEEECCSSSCHHHHH----TTS--
T ss_pred             --chhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCc-eeeccCcccccchhh----hhc--
Confidence              56678899999999986              4889999999999999996432 4589988754 3332    222  


Q ss_pred             CCCCceEeec
Q 018314          165 YNEKKLFGVT  174 (358)
Q Consensus       165 ~~~~kviG~t  174 (358)
                      -.|+|++|+.
T Consensus       138 ~~p~r~ig~H  147 (192)
T d1f0ya2         138 TRQDRFAGLH  147 (192)
T ss_dssp             SCGGGEEEEE
T ss_pred             cCHhHEEeec
Confidence            3577888874

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.81  E-value=4.6e-09  Score=90.64  Aligned_cols=121  Identities=16%  Similarity=0.135  Sum_probs=83.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHH----HH----Hhhc-CC--------CCccEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV----AA----DVGH-IN--------TRSEVAGYMGND   88 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~----~~----dl~~-~~--------~~~~v~~~~~~~   88 (358)
                      ..+||+|||| |.||+.+|..++..|+  +|+|||+++ ....    ..    ++.. ..        ...++...   +
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~---~   76 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT---L   76 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE---S
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc---c
Confidence            3458999998 9999999999999998  899999986 1111    11    1111 11        11245543   3


Q ss_pred             ccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCC
Q 018314           89 QLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEK  168 (358)
Q Consensus        89 d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~  168 (358)
                      + .+++.+||+||.+.              .+|.++.+++..+|++++|... |++||...+...-+   ....  -.|+
T Consensus        77 ~-~~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~-IiaSnTS~l~i~~l---a~~~--~~p~  135 (186)
T d1wdka3          77 S-YGDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDA-ILASNTSTISISLL---AKAL--KRPE  135 (186)
T ss_dssp             S-STTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTC-EEEECCSSSCHHHH---GGGC--SCGG
T ss_pred             c-cccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCe-eEEeccccccHHHH---HHhc--cCch
Confidence            3 46799999999986              4789999999999999996442 45899987654322   1222  2467


Q ss_pred             ceEeec
Q 018314          169 KLFGVT  174 (358)
Q Consensus       169 kviG~t  174 (358)
                      |++|+.
T Consensus       136 r~~g~H  141 (186)
T d1wdka3         136 NFVGMH  141 (186)
T ss_dssp             GEEEEE
T ss_pred             heEeec
Confidence            788774

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.42  E-value=4.4e-07  Score=76.37  Aligned_cols=100  Identities=22%  Similarity=0.298  Sum_probs=63.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-HHHHHhhcCC--C-CccEEEE--ecCCccccccCCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-GVAADVGHIN--T-RSEVAGY--MGNDQLGQALEDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-~~~~dl~~~~--~-~~~v~~~--~~~~d~~~al~~aDiVIi  102 (358)
                      +||+|||| |.+|..+|..|+..++  +|.+||+++.. ....+.....  . .......  ..++|+.+++++||+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            69999998 9999999999999998  99999997521 1111111100  0 0011100  012566789999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNP  147 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP  147 (358)
                      +...                ...++++++++.+- ++.+++...|.
T Consensus        79 ~v~~----------------~~~~~~~~~i~~~l~~~~~iv~~~g~  108 (184)
T d1bg6a2          79 VVPA----------------IHHASIAANIASYISEGQLIILNPGA  108 (184)
T ss_dssp             CSCG----------------GGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred             EEch----------------hHHHHHHHHhhhccCCCCEEEEeCCC
Confidence            8521                12456667777775 56665544443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.39  E-value=2.5e-07  Score=78.89  Aligned_cols=96  Identities=21%  Similarity=0.302  Sum_probs=65.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC----C---CccEEEEecCCccccccCCCCEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN----T---RSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~----~---~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      |||+|||| |.+|.++|..|+..+.  +|.||.++........+....    .   ....... .++|+.+++++||+||
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~ad~Ii   76 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIF-WPEQLEKCLENAEVVL   76 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEE-CGGGHHHHHTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccc-ccccHHHHHhccchhh
Confidence            89999998 9999999999999887  999998643333333443211    1   0111222 2567888999999999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      ++.  |              ...++++++++..+-++..++++
T Consensus        77 ~av--p--------------s~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          77 LGV--S--------------TDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             ECS--C--------------GGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             ccc--c--------------hhhhHHHHHhhccccccceeccc
Confidence            975  2              23456777777777765555544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.39  E-value=6.3e-07  Score=77.62  Aligned_cols=116  Identities=16%  Similarity=0.201  Sum_probs=74.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC----------------CCCccEEEEecCCcccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI----------------NTRSEVAGYMGNDQLGQ   92 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~----------------~~~~~v~~~~~~~d~~~   92 (358)
                      |||+|||+ |.||.++|..|+..++  +|+.||+++.  ....+...                ....++..   ++|+.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~--~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~---~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSST--KIDLINQGKSPIVEPGLEALLQQGRQTGRLSG---TTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE---ESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHH--HHHHhcccCCcccchhhhhhhhhhhccccccc---CCCHHH
Confidence            79999997 9999999999999998  9999999752  11222211                01224444   356778


Q ss_pred             ccCCCCEEEEcCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE-eeCCCCcchHHH
Q 018314           93 ALEDSDVVIIPAGVPRKPG-MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNM-ISNPVNSTVPIA  155 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g-~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv-~tNP~d~~t~~~  155 (358)
                      ++++||+++++.+.|...+ ......+   ..+.+++...++...++..+++ -|-|......+.
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~  134 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVV  134 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTH
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhh
Confidence            8999999999998886443 3222222   2344455555555556665443 366666554433

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.37  E-value=1.7e-07  Score=80.68  Aligned_cols=72  Identities=13%  Similarity=0.250  Sum_probs=52.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcC--------CCCccEEEEecCCccccccCCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHI--------NTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~--------~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      .|.||+|||| |..|.++|..|+..++  +|.||++++.....+.-.+.        ..+.++..   ++|+.+++++||
T Consensus         6 ~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~---t~~l~~a~~~ad   79 (189)
T d1n1ea2           6 YLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKAYNGAE   79 (189)
T ss_dssp             CEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHHHTTCS
T ss_pred             eeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhccccccccccccccccccc---chhhhhccCCCC
Confidence            4558999998 9999999999999887  99999987522221111121        12456765   367889999999


Q ss_pred             EEEEcC
Q 018314           99 VVIIPA  104 (358)
Q Consensus        99 iVIi~a  104 (358)
                      +||++.
T Consensus        80 ~iiiav   85 (189)
T d1n1ea2          80 IILFVI   85 (189)
T ss_dssp             CEEECS
T ss_pred             EEEEcC
Confidence            999974

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.31  E-value=1.2e-06  Score=72.89  Aligned_cols=90  Identities=18%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |||+|||+ |.||+++|..|...++  +|+.||+++. ...+.++.  .  .. ...   ++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~--~--~~-~~~---~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQ--L--VD-EAG---QD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTT--S--CS-EEE---SC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhh--c--cc-eee---ee-cccccccccccccC--c
Confidence            79999998 9999999999999988  9999998752 11222211  1  11 111   23 47899999999875  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                                    ...+.++.+.+..+- ++.+++.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          234455566666654 6666655443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.7e-07  Score=74.01  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=66.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      |||+|||+ |.+|+.++..|+..++  +|.++|+++....................  ..+..+++.++|+||++...+ 
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~iii~vka~-   74 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESL--TANDPDFLATSDLLLVTLKAW-   74 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEE--EESCHHHHHTCSEEEECSCGG-
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCcccccccc--ccchhhhhcccceEEEeeccc-
Confidence            89999998 9999999999999998  99999987621111111111111111111  122357789999999986321 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCCCcch
Q 018314          109 KPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPVNSTV  152 (358)
Q Consensus       109 ~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~d~~t  152 (358)
                                     -..+..+.+..+ .++..|+.+.|=.+...
T Consensus        75 ---------------~~~~~~~~l~~~~~~~~~Iv~~qNG~~~~~  104 (167)
T d1ks9a2          75 ---------------QVSDAVKSLASTLPVTTPILLIHNGMGTIE  104 (167)
T ss_dssp             ---------------GHHHHHHHHHTTSCTTSCEEEECSSSCTTG
T ss_pred             ---------------chHHHHHhhccccCcccEEeeccCcccHHH
Confidence                           134455556555 46888888889776554

>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.07  E-value=5.4e-05  Score=67.60  Aligned_cols=80  Identities=11%  Similarity=0.092  Sum_probs=61.5

Q ss_pred             CCccchHHHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--H
Q 018314          249 GSATLSMAYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--K  322 (358)
Q Consensus       249 g~t~~s~A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~  322 (358)
                      +...++  ..++++|+||.++.+   .++.+++ ++|.+   |+|+++++||+|+++|+.++-- ++|++...++++  +
T Consensus       128 ~~~~~~--e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~  201 (253)
T d1up7a2         128 GGSMYS--TAAAHLIRDLETDEG---KIHIVNTRNNGSIENLPDDYVLEIPCYVRSGRVHTLSQ-GKGDHFALSFIHAVK  201 (253)
T ss_dssp             TTTTHH--HHHHHHHHHHHSSSC---EEEEEEEECTTSSTTSCTTCEEEEEEEEETTEEEEBCC-CCCCHHHHHHHHHHH
T ss_pred             cCcchH--HHHHHHHHHHHcCCC---cEEEEeCCCcCcCCCCChhhheEEEEEecCCccccccc-CCCcHHHHHHHHHHH
Confidence            445555  788999999999875   3444554 45554   8899999999999999999854 499999988887  7


Q ss_pred             HHHHHHHHhhhh
Q 018314          323 LNPTFHIRKLFQ  334 (358)
Q Consensus       323 s~~~L~~~~~~~  334 (358)
                      +++.|.+|+...
T Consensus       202 ~~e~L~veA~~~  213 (253)
T d1up7a2         202 MYERLTIEAYLK  213 (253)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            777777665544

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.03  E-value=3.4e-05  Score=63.96  Aligned_cols=97  Identities=18%  Similarity=0.247  Sum_probs=61.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |+||+|||+ |.+|.++|..|...++..+|+.||.++ ....+.+..-.    .. ..  +........++|+||++.- 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~----~~-~~--~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII----DE-GT--TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC----SE-EE--SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc----hh-hh--hhhhhhhccccccccccCC-
Confidence            457999997 999999999999998777999999875 22233322211    11 11  1111345568999999851 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeeCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKY-CPNAIVNMISNPV  148 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~-~p~a~iiv~tNP~  148 (358)
                                     ...+.++.+.+..+ .++.+++-+++.-
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~k   99 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSVK   99 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ---------------chhhhhhhhhhhcccccccccccccccc
Confidence                           22334444555554 4677766555543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.7e-05  Score=66.62  Aligned_cols=99  Identities=13%  Similarity=0.175  Sum_probs=65.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi  102 (358)
                      .++||+|+||+|.+|++++..|...++  +|.+++++..+     +.... ...++...+    .+++.++++++|+||.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~-----~~~~~-~~~~~~~~gD~~d~~~l~~al~~~d~vi~   73 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSR-----LPSEG-PRPAHVVVGDVLQAADVDKTVAGQDAVIV   73 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGG-----SCSSS-CCCSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhh-----ccccc-ccccccccccccchhhHHHHhcCCCEEEE
Confidence            466999999999999999999998887  99999986522     11111 112222221    1455678999999999


Q ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          103 PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       103 ~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      ++|........     ..+....+.+.+.+++.+-+
T Consensus        74 ~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          74 LLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             CCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC
T ss_pred             EeccCCchhhh-----hhhHHHHHHHHHHHHhcCCC
Confidence            98764322221     13345566677778877633

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=9.3e-06  Score=74.77  Aligned_cols=111  Identities=17%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC---CccccccC--CCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN---DQLGQALE--DSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~---~d~~~al~--~aDiV  100 (358)
                      |||.|+||+|++|+.++..|...++  +|+.+|...  .......+.+... .+++... +-   ..+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999887  999999643  1111111111110 1222221 11   23334555  78999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                      |++|+.+..+  -+...+.++.|+...+.+.+.+++++...+|.
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~  121 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF  121 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEe
Confidence            9999754211  12345778899999999999999997665444

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.95  E-value=9e-06  Score=74.28  Aligned_cols=176  Identities=14%  Similarity=0.139  Sum_probs=108.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC----CcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC----CccccccCCCCEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLGQALEDSDVV  100 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~----~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~aDiV  100 (358)
                      |||.|+||+|++|++++..|...++    ..+++.+|.....+....+.......+++.....    ........+.|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988763    4588888865422111222222222344443211    1223467899999


Q ss_pred             EEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-------CcchHHHHHHHHHhCCCCCCceE
Q 018314          101 IIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-------NSTVPIAAEVFKKAGTYNEKKLF  171 (358)
Q Consensus       101 Ii~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-------d~~t~~~~~~~~~sg~~~~~kvi  171 (358)
                      ++.|+.+...  .....+.+..|+.....+.+.+.++...- +|..|...       ..++       ..+. +.|...+
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~-~I~~Ss~~~yg~~~~~~~~-------E~~~-~~p~~~Y  151 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR-VVHVSTNQVYGSIDSGSWT-------ESSP-LEPNSPY  151 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCE-EEEEEEGGGGCCCSSSCBC-------TTSC-CCCCSHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCce-EEEeecceeecCCCCCCCC-------CCCC-CCCCCHH
Confidence            9998765422  12335567899999999999999887654 33332211       1111       1122 4455566


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCc-eEEEeecCC-ccccccc
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG-ITILPLF  213 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg~-~~~vp~~  213 (358)
                      |.+......+...+++..+++...++ ..++|.+.. +.++|.+
T Consensus       152 ~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~~i~~~  195 (322)
T d1r6da_         152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHPEKLIPLF  195 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCcCcHHHHH
Confidence            77655555666777788888877776 457886532 1345543

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.4e-05  Score=70.23  Aligned_cols=168  Identities=13%  Similarity=0.064  Sum_probs=101.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      +||.|+||+|++|++++..|...++  +|+.+|.... +....+.+.....++.... .+.++.++.++|+||++|+...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~-~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~~   77 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFT-GRKRNVEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPAS   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSS-CCGGGTGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCc-CCHHHHHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccCC
Confidence            5999999999999999999988887  8999985321 0001122212122344332 2334567789999999987543


Q ss_pred             CC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC------CCC-cchHHHHHHHHHhCCCCCCceEeeccccHH
Q 018314          109 KP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVN-STVPIAAEVFKKAGTYNEKKLFGVTTLDVV  179 (358)
Q Consensus       109 ~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN------P~d-~~t~~~~~~~~~sg~~~~~kviG~t~lds~  179 (358)
                      .+  .....+.+..|+.....+.+.+++...  .+|.+|.      |.. .+..-.  ....+. +.|...+|.+.....
T Consensus        78 ~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~~--~~~~~~-~~p~~~Y~~sK~~~E  152 (312)
T d2b69a1          78 PPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSEDY--WGHVNP-IGPRACYDEGKRVAE  152 (312)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTTC--CCBCCS-SSTTHHHHHHHHHHH
T ss_pred             chhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCccc--cCCCCC-CCCccHHHHHHHHHH
Confidence            11  234566788999999999999998764  4444322      111 011000  000011 335556666655555


Q ss_pred             HHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          180 RAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       180 R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      .+-...++..|++...++. .|+|.+.
T Consensus       153 ~~~~~~~~~~~~~~~~lR~~~vyGp~~  179 (312)
T d2b69a1         153 TMCYAYMKQEGVEVRVARIFNTFGPRM  179 (312)
T ss_dssp             HHHHHHHHHHCCCEEEEEECCEECTTC
T ss_pred             HHHHHHHHHhCCcEEEEEeeeEECCCC
Confidence            6667777787887666664 4778553

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.9e-06  Score=71.89  Aligned_cols=109  Identities=16%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEE--EecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAG--YMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~--~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++||.|+||+|++|++++..|...+...+|.++++++...........    ....  +...+++.++++++|+|+.++|
T Consensus        14 ~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i----~~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          14 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNV----NQEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGC----EEEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhccccccee----eeeeeccccccccccccccccccccccc
Confidence            358999999999999999999888877799999986511000000110    1111  1112456788999999999987


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i  141 (358)
                      ... ......++...|......+++...+...+-++
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi  124 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFN  124 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCccccc
Confidence            532 12234556678888889999988877655433

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=1.2e-05  Score=74.76  Aligned_cols=166  Identities=13%  Similarity=0.036  Sum_probs=98.5

Q ss_pred             eEE-EEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH---HHHHHhhcC--CCCccEEEEec----CCccccccCCC--
Q 018314           30 KVA-VLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP---GVAADVGHI--NTRSEVAGYMG----NDQLGQALEDS--   97 (358)
Q Consensus        30 KI~-IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~---~~~~dl~~~--~~~~~v~~~~~----~~d~~~al~~a--   97 (358)
                      ||+ |+||+|++|++++..|...++  +|+.+|.....   .....+.+.  ....+++...+    ..++.+.+++.  
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   79 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQP   79 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCC
Confidence            555 999999999999999999887  99999975311   111111111  11234554321    12233455544  


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEee------CCCCc-chHHHHHHHHHhCCCC
Q 018314           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMIS------NPVNS-TVPIAAEVFKKAGTYN  166 (358)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~t------NP~d~-~t~~~~~~~~~sg~~~  166 (358)
                      |+|+++|+.....  ..+....+..|+.....+.+.+++++  +...+|.+|      +|.+. ++        +...+.
T Consensus        80 d~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~--------E~~~~~  151 (357)
T d1db3a_          80 DEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQK--------ETTPFY  151 (357)
T ss_dssp             SEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBC--------TTSCCC
T ss_pred             CEEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcC--------CCCCCC
Confidence            9999999864322  24456677889999999999999876  234555444      33322 21        221144


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      |...+|.+.+....+-...++..+++..-++. .++|...
T Consensus       152 P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~  191 (357)
T d1db3a_         152 PRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRR  191 (357)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTS
T ss_pred             CCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCC
Confidence            55667776665666666677777776655553 3777643

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.88  E-value=1.2e-05  Score=66.76  Aligned_cols=64  Identities=23%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||. |.||+.+|..|+..++  +|..||+++.  ...++....    ...   ..+..+++++||+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~--~~~~~~~~~----~~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPE--AIADVIAAG----AET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHH--HHHHHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcc--hhHHHHHhh----hhh---cccHHHHHhCCCeEEEEc
Confidence            79999997 9999999999999998  9999998752  222333222    111   134578899999999985

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=97.85  E-value=1.5e-05  Score=72.29  Aligned_cols=111  Identities=19%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecC----CccccccCCC--CEE
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN----DQLGQALEDS--DVV  100 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~----~d~~~al~~a--DiV  100 (358)
                      ||.|+||+|++|++++..|...++  +|+.+|....   ......+...   .+++.+.+.    .++.+++++.  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999887  8999985331   1111122221   233333211    2334555554  999


Q ss_pred             EEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          101 IIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       101 Ii~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      |++|+......  .+-.+....|+...+.+.+...+....-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99987543221  2345677889999999999999988665555444

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.70  E-value=3.4e-05  Score=71.33  Aligned_cols=171  Identities=13%  Similarity=0.018  Sum_probs=101.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe--cCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM--GNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~--~~~d~~~al~~aDiVIi~a  104 (358)
                      +.|||.|+||+|++|++++..|...++  +|+.+|.........++.    ..+.....  ...++.+++++.|.||++|
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMF----CDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGT----CSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcc----cCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            789999999999999999999999987  899999765211111111    11222111  1123345678999999998


Q ss_pred             CCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHH--------HHHHHhCCCCCCceEee
Q 018314          105 GVPRKP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAA--------EVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       105 g~~~~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~--------~~~~~sg~~~~~kviG~  173 (358)
                      +.....   ...-......|......+.....+.+..- +|..|.-. .....-.        ..-..+. ..|...+|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~-~i~~SS~~-~~~~~~~~~~~~~~~~~~e~~~-~~p~~~Yg~  164 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKR-FFYASSAC-IYPEFKQLETTNVSLKESDAWP-AEPQDAFGL  164 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSE-EEEEEEGG-GSCGGGSSSSSSCEECGGGGSS-BCCSSHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccc-cccccccc-cccccccccccccccccccCCc-CCCCCHHHH
Confidence            654321   23445567789999999999998877543 34333211 1000000        0000111 234556666


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCc-eEEEeecCC
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVN-VPVVGGHAG  206 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~hg~  206 (358)
                      +.+...++-..+.+..|++..-++ ..++|.++.
T Consensus       165 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~  198 (363)
T d2c5aa1         165 EKLATEELCKHYNKDFGIECRIGRFHNIYGPFGT  198 (363)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCc
Confidence            655556666666777787765565 357786654

>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.68  E-value=0.00012  Score=65.85  Aligned_cols=74  Identities=9%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHHHHHH
Q 018314          257 YAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPTFHIR  330 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~L~~~  330 (358)
                      ..++++++||.+|.+   .++.+++ ++|.+   |+|+++++||+|+++|+.++.. ++|++...++++  ++++.|.+|
T Consensus       146 e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~~~~e~L~ve  221 (270)
T d1s6ya2         146 DAACSLISSIYNDKR---DIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIAV-GDLPVAVRGLVQQIKSFERVAAE  221 (270)
T ss_dssp             HHHHHHHHHHHHTCC---CEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC---eEEEEECCCCCcCCCCCccceEEEEEEEECCceEeeec-CCCcHHHHHHHHHHHHHHHHHHH
Confidence            789999999999975   2444555 45544   7899999999999999999854 499999999888  778888877


Q ss_pred             hhhh
Q 018314          331 KLFQ  334 (358)
Q Consensus       331 ~~~~  334 (358)
                      +.+.
T Consensus       222 Aal~  225 (270)
T d1s6ya2         222 AAVT  225 (270)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.65  E-value=8.8e-05  Score=61.29  Aligned_cols=65  Identities=22%  Similarity=0.343  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+||+|||. |.||+.+|..|...++  +|..||++..  ...++....   ...    ..++.++++++|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~--~~~~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQS--AVDGLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHH--HHHHHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchh--hhhhhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            569999997 9999999999999998  9999998652  223333322   111    134578899999999975

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=7.4e-05  Score=61.12  Aligned_cols=97  Identities=14%  Similarity=0.157  Sum_probs=61.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      |+||+|+||+|.||+-+...|..++  ...+++++......+.........  ..+.  . ..+ .++++++|+++++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~--~~~~--~-~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQ--D-AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCC--CBCE--E-TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCc--eeee--c-ccc-hhhhhcCcEEEEecC
Confidence            4599999999999999997666554  356888887655322221112111  1111  1 122 357899999999863


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                                      .++.+++++.+.+.+.++++  +.|..
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss   99 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAAS   99 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSS
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCc
Confidence                            45667778888777666543  55554

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=97.54  E-value=0.00057  Score=62.43  Aligned_cols=107  Identities=11%  Similarity=-0.009  Sum_probs=69.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccE-EEEe----cCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEV-AGYM----GNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v-~~~~----~~~d~~~al~~aDiV  100 (358)
                      +.+||.|+||+|++|+.++..|...|+  +|+...++. .......+.+.....+. ....    +..++.++++++|.|
T Consensus        10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v   87 (342)
T d1y1pa1          10 EGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CcCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence            457999999999999999999999887  776655443 11111111111111111 1111    123445789999999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC  136 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~  136 (358)
                      +..++.. ....+.......|+.....+.+.+.++.
T Consensus        88 ~~~a~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          88 AHIASVV-SFSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             EECCCCC-SCCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hhhcccc-cccccccccccchhhhHHHHHHhhhccc
Confidence            9988653 2344556677789999999999988874

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.54  E-value=4.3e-05  Score=62.68  Aligned_cols=65  Identities=14%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|++++..|...+.  ++.++|.+...  ..++....   .+..   ..|..+++++||+||++.
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~--~~~l~~~~---g~~~---~~~~~~~~~~~dvIilav   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLER--SKEIAEQL---ALPY---AMSHQDLIDQVDLVILGI   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHH--HHHHHHHH---TCCB---CSSHHHHHHTCSEEEECS
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHh--HHhhcccc---ceee---echhhhhhhccceeeeec
Confidence            79999997 9999999999988776  99999976421  12222111   0111   234567889999999986

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=0.0001  Score=68.82  Aligned_cols=174  Identities=13%  Similarity=0.122  Sum_probs=96.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-----------------HHH-HHHhhcCCCCccEEEEecC-C
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-----------------PGV-AADVGHINTRSEVAGYMGN-D   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-----------------~~~-~~dl~~~~~~~~v~~~~~~-~   88 (358)
                      .|||.|+||+|++|++++..|+..++  +|+.+|--..                 ... ...+.... ..+++.+.+. .
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~Dl~   77 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDIC   77 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhc-CCCcEEEEccCC
Confidence            37999999999999999999999998  9999982110                 000 00010000 1233433211 1


Q ss_pred             ---ccccccCC--CCEEEEcCCCCCCC--CCC---HHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcch-HHH-H
Q 018314           89 ---QLGQALED--SDVVIIPAGVPRKP--GMT---RDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTV-PIA-A  156 (358)
Q Consensus        89 ---d~~~al~~--aDiVIi~ag~~~~~--g~~---r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t-~~~-~  156 (358)
                         .+.+++++  .|+|++.|+....+  -.+   -.+....|+.....+.+.+++++.+..++..|....... ..- .
T Consensus        78 d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~  157 (393)
T d1i24a_          78 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE  157 (393)
T ss_dssp             SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred             CHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccccc
Confidence               22344553  49999999764311  122   235678899999999999999998876665543321000 000 0


Q ss_pred             HHH---HH--------hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          157 EVF---KK--------AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       157 ~~~---~~--------sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      +.+   ..        .. ..|...+|.+.+....+....++..+++...++. .++|.+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~-~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~  217 (393)
T d1i24a_         158 EGYITITHNGRTDTLPYP-KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKT  217 (393)
T ss_dssp             SSEEEEEETTEEEEEECC-CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCC
T ss_pred             cccccccccccccccccc-cccccHHHHHhhhhcccccccccccceeeeecccccccCCCc
Confidence            000   00        00 1233345555444445555666777776666654 4667543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.51  E-value=0.00018  Score=65.76  Aligned_cols=170  Identities=14%  Similarity=0.000  Sum_probs=105.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHH---HHHHhhcCCCCccEEEEec-CCc---cccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPG---VAADVGHINTRSEVAGYMG-NDQ---LGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~---~~~dl~~~~~~~~v~~~~~-~~d---~~~al~~a   97 (358)
                      ++++|.|+||+|++|++++..|...++  +|..+|...  ...   ....+........++...+ ..|   ......+.
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~   92 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV   92 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccc
Confidence            456899999999999999999999998  999999643  111   1111111111123333321 111   22456788


Q ss_pred             CEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC------CCCcchHHHHHHHHHhCCCCCCc
Q 018314           98 DVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------PVNSTVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus        98 DiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN------P~d~~t~~~~~~~~~sg~~~~~k  169 (358)
                      |.|+..+....-+  ..+.......|+.....+.+.+.+.....++..-|.      |....++       .+. ..|..
T Consensus        93 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E-------~~~-~~p~~  164 (341)
T d1sb8a_          93 DYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVE-------DTI-GKPLS  164 (341)
T ss_dssp             SEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCT-------TCC-CCCCS
T ss_pred             cccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccC-------CCC-CCCCC
Confidence            8888887543211  234456778999999999999998876655444332      1111211       112 34556


Q ss_pred             eEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecCC
Q 018314          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (358)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (358)
                      .+|.+.+...++...+++..+++..-++. .++|.+.+
T Consensus       165 ~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~  202 (341)
T d1sb8a_         165 PYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQD  202 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCC
T ss_pred             cchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcC
Confidence            77777666677777778888888777774 48886643

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00012  Score=66.79  Aligned_cols=105  Identities=15%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC----Cccc-cccCCCCEEEEc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN----DQLG-QALEDSDVVIIP  103 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~----~d~~-~al~~aDiVIi~  103 (358)
                      |||.|+||+|++|++++..|+..+.. +|+.+|..... . .++..   ..+++...+.    .++. .+++++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~-~-~~~~~---~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDA-I-SRFLN---HPHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGG-G-GGGTT---CTTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcc-h-hhhcc---CCCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            79999999999999999988877732 89999976421 1 01111   1234443221    1222 367899999999


Q ss_pred             CCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCe
Q 018314          104 AGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNA  139 (358)
Q Consensus       104 ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a  139 (358)
                      |+......  ..-...+..|+.....+.+.+.+...+-
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~  112 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRI  112 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccCCccccccccccccccccccccccccc
Confidence            97643222  2234567899999999999998887543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.48  E-value=0.00012  Score=61.14  Aligned_cols=74  Identities=15%  Similarity=0.259  Sum_probs=45.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .|||+|||. |.||+.++..|+..++  +|+.||+++.+.  ...........+.........++...+.+++.+++..
T Consensus         1 ~MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (178)
T d1pgja2           1 SMDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILV   76 (178)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECC
T ss_pred             CCEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEee
Confidence            489999997 9999999999999998  899999875222  2222222222223333211122334556666666653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.48  E-value=0.00018  Score=60.17  Aligned_cols=71  Identities=17%  Similarity=0.241  Sum_probs=48.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC-CCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN-TRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+|+|||. |.||+.+|..|...++  +|+.||+++..  ..++.... ............++.+.+.++|.++++.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSK--VDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHH--HHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence            47999997 9999999999999998  89999987632  22332221 1111222111234557789999999975

>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.45  E-value=0.0003  Score=63.28  Aligned_cols=75  Identities=13%  Similarity=0.112  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHHHHH--HHHHHHHH
Q 018314          256 AYAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQEGLE--KLNPTFHI  329 (358)
Q Consensus       256 A~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~~L~--~s~~~L~~  329 (358)
                      +..++++++||.++.+   .++.+++ ++|.+   |+|.++++||+|+++|+.++-- ++|++...++++  ++++.|.+
T Consensus       152 ~e~av~ii~ai~~~~~---~~~~vNv~N~G~I~~Lp~d~vVEVp~~V~~~Gi~P~~~-g~lP~~~~~Li~~~k~~e~Ltv  227 (276)
T d1u8xx2         152 ASYIVDLARAIAYNTG---ERMLLIVENNGAIANFDPTAMVEVPCIVGSNGPEPITV-GTIPQFQKGLMEQQVSVEKLTV  227 (276)
T ss_dssp             THHHHHHHHHHHHTCC---EEEEEEEECTTSBTTSCTTSEEEEEEEEETTEEEECCC-BCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCC---cEEEEEeCCCCcCCCCChhhheeeEEEEcCCceEeeec-CCCcHHHHHHHHHHHHHHHHHH
Confidence            3678999999999875   3444444 45554   8899999999999999999855 499999999888  78888877


Q ss_pred             Hhhhh
Q 018314          330 RKLFQ  334 (358)
Q Consensus       330 ~~~~~  334 (358)
                      |+...
T Consensus       228 eAa~~  232 (276)
T d1u8xx2         228 EAWAE  232 (276)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.44  E-value=0.00011  Score=62.34  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=59.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--------------CCccEEEEecCCcccccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--------------TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--------------~~~~v~~~~~~~d~~~al   94 (358)
                      |||+|||. |.||..+|..++ .++  +|+.||+++.  ....|....              ........   .+...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~--~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~---~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPS--KVDKINNGLSPIQDEYIEYYLKSKQLSIKAT---LDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHH--HHHHHHTTCCSSCCHHHHHHHHHSCCCEEEE---SCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHH--HHHHHhhcccccchhhHHHHhhhhhhhhhcc---chhhhhh
Confidence            79999997 999999997665 576  9999999861  111122110              11233322   3345778


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                      .++|+|+++...|.....+-     .....+....+.+....+...++
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~-----~~~~~v~~~~~~~~~~~~~~~ii  114 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINY-----FDTQHVETVIKEVLSVNSHATLI  114 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTE-----ECCHHHHHHHHHHHHHCSSCEEE
T ss_pred             hccccccccCCccccccCCC-----cceeEEeehhhhhhhcccceeEE
Confidence            99999999876654221110     11234455555555666666544

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.43  E-value=4.6e-05  Score=70.88  Aligned_cols=179  Identities=16%  Similarity=0.145  Sum_probs=100.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Cc---cccccC--CCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ---LGQALE--DSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d---~~~al~--~aDiVIi  102 (358)
                      |||.|+||+|++|++++..|+..++- .++++|.....+....+.+.....+++...+. .|   +.+.++  +.|+||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~-vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQD-TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC-EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            79999999999999999999888762 47778864421111223333323355554311 22   222333  5899999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCC--------eEEEEeeCCC------C-------cchHHHHHHH
Q 018314          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPN--------AIVNMISNPV------N-------STVPIAAEVF  159 (358)
Q Consensus       103 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~--------a~iiv~tNP~------d-------~~t~~~~~~~  159 (358)
                      +|+.+..+-  .+-.+.+..|+.....+...+.++...        ..+|..|.-.      .       ...+.    .
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~----~  155 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPL----F  155 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCC----B
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCC----c
Confidence            987532110  122456778888888888777765321        2344332210      0       00000    0


Q ss_pred             HHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecCC-cccccc
Q 018314          160 KKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG-ITILPL  212 (358)
Q Consensus       160 ~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~-~~~vp~  212 (358)
                      .......|..++|.+.+...++-...++..+++...++. .|+|.++. +.++|.
T Consensus       156 ~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~  210 (361)
T d1kewa_         156 TETTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPL  210 (361)
T ss_dssp             CTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHH
Confidence            001112345556777666667777777888887777764 57887653 134554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.36  E-value=0.00013  Score=59.48  Aligned_cols=65  Identities=17%  Similarity=0.136  Sum_probs=44.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||+ |.+|++++..|...+. .+|.++|+++..  ..++....   .+...   ++ .++++++|+||++.
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~--~~~l~~~~---~~~~~---~~-~~~v~~~Div~lav   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEK--RERLEKEL---GVETS---AT-LPELHSDDVLILAV   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHH--HHHHHHHT---CCEEE---SS-CCCCCTTSEEEECS
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhH--HHHhhhhc---ccccc---cc-cccccccceEEEec
Confidence            79999998 9999999987766552 399999987522  22232211   13332   23 25689999999985

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=97.36  E-value=0.00017  Score=66.14  Aligned_cols=178  Identities=16%  Similarity=0.112  Sum_probs=99.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi  102 (358)
                      .||||.|+||+|+||++++..|...+.--.++..|.....+....+... ...+++...+    ...+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            3789999999999999999999887764456667743211111111111 1224444321    1334567799999999


Q ss_pred             cCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC-cc----hHHH----HHHHHHhCCCCCCceE
Q 018314          103 PAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN-ST----VPIA----AEVFKKAGTYNEKKLF  171 (358)
Q Consensus       103 ~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d-~~----t~~~----~~~~~~sg~~~~~kvi  171 (358)
                      .|+......  .+-.+.+..|+.....+.....+.+..-+++.-+.--+ ..    ....    ...........|...+
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            886543222  12346678899999999999988875432222111000 00    0000    0000001112344556


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCce-EEEeecC
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHA  205 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg  205 (358)
                      |.+.+...++-....+..+++..-++. .++|.+.
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~  194 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQ  194 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCC
Confidence            666555556666666777766555553 4778553

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=0.00026  Score=64.89  Aligned_cols=110  Identities=19%  Similarity=0.062  Sum_probs=71.3

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cH--HHHHHhhcCCCCccEEEEec-CC---ccccccC--CCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TP--GVAADVGHINTRSEVAGYMG-ND---QLGQALE--DSD   98 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~--~~~~dl~~~~~~~~v~~~~~-~~---d~~~al~--~aD   98 (358)
                      .|.|+||+|++|++++..|...++  +|+.+|...   ..  .....+.+.    +++.... -.   ++.++++  +.|
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~----~v~~~~~Dl~d~~~l~~~~~~~~~d   76 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKH----HIPFYEVDLCDRKGLEKVFKEYKID   76 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTS----CCCEEECCTTCHHHHHHHHHHSCCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhccc----CCeEEEeecCCHHHHHHHHhccCCC
Confidence            588999999999999999999987  899998533   11  111222221    1222211 11   2223333  789


Q ss_pred             EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           99 VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        99 iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +||++|+.+...  .+........|......+.+..++.....++..-|
T Consensus        77 ~VihlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          77 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EEEEccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            999999765311  23445667789999999999999988665444333

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.32  E-value=0.00011  Score=62.55  Aligned_cols=105  Identities=12%  Similarity=0.127  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Cc-cccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ-LGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d-~~~al~~aDiVIi~a  104 (358)
                      +++||.|+||+|.+|++++..|...+...+|+...++...       .   ..++...... .+ ......+.|.||.++
T Consensus         1 t~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~-------~---~~~~~~~~~d~~~~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           1 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-------E---HPRLDNPVGPLAELLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-------C---CTTEECCBSCHHHHGGGCCSCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh-------h---cccccccccchhhhhhccccchheeeeee
Confidence            3579999999999999999999998875566665544311       0   1122211000 01 123345689999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i  141 (358)
                      |..........++...|......++...++....-++
T Consensus        71 g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          71 GTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeeccccccccccccchhhhhhhcccccccccccccc
Confidence            7654333445677788888888999888876655433

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0027  Score=55.98  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=94.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+.+.|+||++++|..++..|+..|.  .|++.|+++  .+..+.++.......++..+. +-+|          ..+.+
T Consensus        10 ~Kv~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_          10 DRLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            34688999999999999999999997  899999876  344445555443333444432 1122          12335


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCH---HHHHHHH----HHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTR---DDLFNIN----AGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N----~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..-|++|..||.... +  ..+.   ...+..|    .-..+.+.+.+.+.. .++.||+++-......           
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~-----------  156 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV-----------  156 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-----------
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC-----------
Confidence            678999999986432 2  2222   2233344    556677888887766 4677777765443110           


Q ss_pred             CCCCC--ceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          164 TYNEK--KLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       164 ~~~~~--kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                       .|..  -.++.+.-.-..|-+.+|..+...+..|++.++.
T Consensus       157 -~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         157 -LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             -CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             -CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence             1110  0112211112345667777765456678776663

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.28  E-value=0.00013  Score=59.47  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=45.9

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |||+|||. |.||+.++..|...++  ++..+|.+....... .....   .+..     +..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~---~~~~-----~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RARTV---GVTE-----TSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHHH---TCEE-----CCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhcc---cccc-----cHHHHHhhcCeEEEEe
Confidence            79999997 9999999999999998  899999766322211 11111   1221     1357899999999985

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.27  E-value=0.0011  Score=61.33  Aligned_cols=174  Identities=16%  Similarity=0.074  Sum_probs=95.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh-CCCCcEEEEEecCC-----------cHHHHHHhhcCC------CCccEEEEec-CC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKL-NPLVSRLALYDIAN-----------TPGVAADVGHIN------TRSEVAGYMG-ND   88 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~-~~~~~ei~L~D~~~-----------~~~~~~dl~~~~------~~~~v~~~~~-~~   88 (358)
                      .|||.|+||+|++|++++..|.. .+.  +|+.+|.-.           .......+....      ....+....+ -.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            47999999999999999987765 666  899998411           122222222211      1123333321 11


Q ss_pred             c---ccc---ccCCCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC-CcchHHHHH--
Q 018314           89 Q---LGQ---ALEDSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV-NSTVPIAAE--  157 (358)
Q Consensus        89 d---~~~---al~~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~-d~~t~~~~~--  157 (358)
                      |   +++   ..+++|+|+++|+......  .........|......+....++..++.++...+--+ ......-..  
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~  159 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTN  159 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----C
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccc
Confidence            2   222   3357899999997543221  2334567789999999999999988765544321110 000000000  


Q ss_pred             ---HHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeec
Q 018314          158 ---VFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGH  204 (358)
Q Consensus       158 ---~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  204 (358)
                         ...... ..|...+|.+.+...++-....+..|++...++. .++|..
T Consensus       160 ~~~~~e~~~-~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~  209 (383)
T d1gy8a_         160 AEPIDINAK-KSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (383)
T ss_dssp             CCCBCTTSC-CBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             ccccccccC-CCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccC
Confidence               000011 2344555665555556666666777776666653 466643

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.27  E-value=0.00028  Score=59.71  Aligned_cols=80  Identities=18%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVII  102 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi  102 (358)
                      -+.++|.|+||+|.+|..++..|++.+.  +|++.|++.  ....+..+............ +...+..+++.++|+||.
T Consensus        21 l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          21 VKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            3566999999999999999999999997  899999986  22222333221110111111 122455678999999999


Q ss_pred             cCCCC
Q 018314          103 PAGVP  107 (358)
Q Consensus       103 ~ag~~  107 (358)
                      ++|.+
T Consensus        99 ~Ag~g  103 (191)
T d1luaa1          99 AGAIG  103 (191)
T ss_dssp             CCCTT
T ss_pred             cCccc
Confidence            98864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.26  E-value=0.00026  Score=57.82  Aligned_cols=111  Identities=14%  Similarity=0.159  Sum_probs=69.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC--CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNP--LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~--~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      |||+||||+|.+|+-+...|...+  ...++.++......++..++...  ...+.  . ..| .+.++++|+|+++.. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~--~~~~~--~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKD--AGMLH--D-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSC--CCBCE--E-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCc--ceeee--c-ccc-hhhhccccEEEEecC-
Confidence            799999999999999987666533  34688887765433332211111  11111  1 123 356899999999862 


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeeccc
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVTTL  176 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t~l  176 (358)
                                     -.+.+++++.+.+.+.++++  +.|..|         +|    +.++-++++.-+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsd---------fR----~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAAST---------LR----MDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSST---------TT----TCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCcc---------cc----ccCCceEEeCCc
Confidence                           34567888888888877744  566654         22    455666777433

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.22  E-value=0.00075  Score=60.54  Aligned_cols=165  Identities=14%  Similarity=0.068  Sum_probs=96.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Ccc---cccc--CCCCEEEE
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQL---GQAL--EDSDVVII  102 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d~---~~al--~~aDiVIi  102 (358)
                      +||-|+||+|++|++++..|...++  +|+-+|..........+.+.....+++..... .|.   .+.+  ...++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            4899999999999999999998887  99999976521111122222223355544311 111   1111  24567777


Q ss_pred             cCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeC------C-CCcchHHHHHHHHHhCCCCCCceEee
Q 018314          103 PAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISN------P-VNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       103 ~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tN------P-~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      +++.....  .......+..|+.....+.+.++++.+...++..|.      + .....       ..+. +.|...+|.
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~-------E~~~-~~p~~~Y~~  150 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD-------ENTP-FYPRSPYGV  150 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC-------TTSC-CCCCSHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCC-------CCCC-ccccChhHH
Confidence            66543211  234566788899999999999999997766655432      1 11111       1111 334455555


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCce-EEEee
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNV-PVVGG  203 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~  203 (358)
                      +.+...++....++..+++...++. -++|.
T Consensus       151 sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp  181 (321)
T d1rpna_         151 AKLYGHWITVNYRESFGLHASSGILFNHESP  181 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECCEECT
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEEecccCC
Confidence            5454556666666777766544442 25664

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.17  E-value=0.00053  Score=56.98  Aligned_cols=100  Identities=23%  Similarity=0.285  Sum_probs=65.3

Q ss_pred             chhhhhhhhcccccccccccCCC---CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCC
Q 018314            3 SSVLRSVKTLAKPAGARGYSSES---VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTR   78 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~   78 (358)
                      -+++-.-+.|.++..-+..+-..   .++-||.|||| |.+|..-+......+-  ++..+|.+. ...+..+.....  
T Consensus         4 ~av~~ga~~L~~~~gG~G~Llgg~~gv~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~~--   78 (168)
T d1pjca1           4 LSVQFGARFLERQQGGRGVLLGGVPGVKPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGSR--   78 (168)
T ss_dssp             HHHHHHHHHTSGGGTSCCCCTTCBTTBCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGGG--
T ss_pred             HHHHHHHHHhhhhcCCcEEEecCCCCCCCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhccc--
Confidence            35555666777776655533322   46889999998 9999998888876664  899999986 222222222111  


Q ss_pred             ccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           79 SEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        79 ~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      .... ......+++.+++||+||-++-.|-
T Consensus        79 ~~~~-~~~~~~l~~~~~~aDivI~aalipG  107 (168)
T d1pjca1          79 VELL-YSNSAEIETAVAEADLLIGAVLVPG  107 (168)
T ss_dssp             SEEE-ECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             ceee-hhhhhhHHHhhccCcEEEEeeecCC
Confidence            1111 2223456788999999999987664

>d1obba2 d.162.1.2 (A:173-480) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.17  E-value=0.00078  Score=61.41  Aligned_cols=73  Identities=15%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             HHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCHHHHH-HHH--HHHHHHHHHh
Q 018314          259 GAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSDFEQE-GLE--KLNPTFHIRK  331 (358)
Q Consensus       259 ~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~~E~~-~L~--~s~~~L~~~~  331 (358)
                      ++++|.||.++.+   .++.+++ ++|.+   |+|.++++||+|+++|+.++.-.++|++.-++ +++  ++++.|.+|+
T Consensus       184 a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~v~~~Gi~P~~v~~~lP~~~~~gl~~~~~~~e~L~veA  260 (308)
T d1obba2         184 HIPFIDALLNDNK---ARFVVNIPNKGIIHGIDDDVVVEVPALVDKNGIHPEKIEPPLPDRVVKYYLRPRIMRMEMALEA  260 (308)
T ss_dssp             HHHHHHHHHHCCC---EEEEEEEECTTSSTTSCTTSEEEEEEEEETTEEEECCCSSCCCHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---eEEEEECCCCCcCCCCCccceEEEEEEEeCCceeeeecCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999975   3444544 45654   88999999999999999998532378887654 554  7889998887


Q ss_pred             hhh
Q 018314          332 LFQ  334 (358)
Q Consensus       332 ~~~  334 (358)
                      .+.
T Consensus       261 a~~  263 (308)
T d1obba2         261 FLT  263 (308)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.14  E-value=0.0019  Score=50.90  Aligned_cols=98  Identities=20%  Similarity=0.188  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCc---cc-cccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQ---LG-QALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d---~~-~al~~aDiVIi~a  104 (358)
                      |||.|+|+ |.+|..++..|...+.  +++++|.++..  ..++.... ...+-. .+.+|   +. ..+++||.++.+.
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~--~~~~~~~~-~~~vi~-Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDI--CKKASAEI-DALVIN-GDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHHHHHC-SSEEEE-SCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhh--hhhhhhhh-hhhhcc-CcccchhhhhhcChhhhhhhcccC
Confidence            79999998 9999999999999887  99999987621  11222111 111111 11112   11 3468999998874


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..           -..|+-+    +...+.++++-++..+.||.
T Consensus        74 ~~-----------d~~N~~~----~~~~k~~~~~~iI~~~~~~~  102 (132)
T d1lssa_          74 GK-----------EEVNLMS----SLLAKSYGINKTIARISEIE  102 (132)
T ss_dssp             SC-----------HHHHHHH----HHHHHHTTCCCEEEECSSTT
T ss_pred             Cc-----------HHHHHHH----HHHHHHcCCceEEEEecCHH
Confidence            21           1345422    22344577776665566665

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.04  E-value=0.0005  Score=62.59  Aligned_cols=113  Identities=18%  Similarity=0.161  Sum_probs=71.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec-CCc---cccccC--CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG-NDQ---LGQALE--DSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~-~~d---~~~al~--~aD   98 (358)
                      +.+||.|+||+|++|+.++..|...++  +|+.+|++..  ........ ..  ..++...+ -.|   +.++++  +.|
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~-~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~   81 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETAR-VA--DGMQSEIGDIRDQNKLLESIREFQPE   81 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTT-TT--TTSEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhh-cc--cCCeEEEeeccChHhhhhhhhhchhh
Confidence            347999999999999999999999997  8999998762  22211111 11  12333221 112   223443  448


Q ss_pred             EEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314           99 VVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus        99 iVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      +|++.|+.+....  ..-......|+.....+...+++......++..
T Consensus        82 ~v~~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~  129 (356)
T d1rkxa_          82 IVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNI  129 (356)
T ss_dssp             EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEE
T ss_pred             hhhhhhccccccccccCCccccccccccchhhhhhhhccccccccccc
Confidence            8888886542111  122445677999999999999998866555433

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.03  E-value=0.00049  Score=54.37  Aligned_cols=69  Identities=16%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec--CCcccc-ccCCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG--NDQLGQ-ALEDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~--~~d~~~-al~~aDiVIi~a  104 (358)
                      +|+.|+|+ |.+|+.++..|...++  +++++|.++.  .+.++.+...  .+.....  ...+.+ .+.+||.||++.
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~--~~~~~~~~~~--~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEE--KVNAYASYAT--HAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHH--HHHHTTTTCS--EEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHH--HHHHHHHhCC--cceeeecccchhhhccCCccccEEEEEc
Confidence            37899998 9999999999999998  8999998752  2233433321  2221111  112222 378999988875

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.03  E-value=0.00017  Score=61.07  Aligned_cols=110  Identities=17%  Similarity=0.016  Sum_probs=64.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEE-ecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGY-MGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~-~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +++|.|+||+|++|++++..|+..+.--.++..++++  ....++.....  .+... ....++.++++++|.||++++.
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~--~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~d~vi~~a~~   78 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA--QGKEKIGGEAD--VFIGDITDADSINPAFQGIDALVILTSA   78 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCH--HHHHHTTCCTT--EEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCH--HHHHhccCCcE--EEEeeeccccccccccccceeeEEEEee
Confidence            5699999999999999999999988632444444332  22222322110  11110 0113445788999999998864


Q ss_pred             CCC---------C------CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018314          107 PRK---------P------GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (358)
Q Consensus       107 ~~~---------~------g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i  141 (358)
                      ...         .      ..........|..-.+.+.............
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (252)
T d2q46a1          79 VPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIV  128 (252)
T ss_dssp             CCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEE
T ss_pred             ccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccc
Confidence            211         0      0112334456666677777777766654433

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00076  Score=59.20  Aligned_cols=159  Identities=13%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +.+++.|+||++.+|..++..|+..|.  +|++.|+++  .+....++..... ..++.-...-....+.+..-|++|..
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            456899999999999999999999997  899999876  2233333332110 00000000001122456788999999


Q ss_pred             CCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          104 AGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       104 ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                      ||.....   ..+..   ..+..|    ..+.+.+.+.+.+....+.|++++.-....           + .|..-.++.
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~-----------~-~~~~~~Y~a  151 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR-----------A-VTNHSVYCS  151 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------C-CTTBHHHHH
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-----------c-ccchhhhhh
Confidence            9875422   22322   234444    345677777666556667777765433211           1 222222222


Q ss_pred             ccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          174 TTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       174 t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +.-.-..+-+.+|+.++  ++.|++-.+
T Consensus       152 sKaal~~lt~~lA~el~--~~gIrvN~I  177 (244)
T d1pr9a_         152 TKGALDMLTKVMALELG--PHKIRVNAV  177 (244)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHHhC--CCcEEEEEE
Confidence            21122346677777764  667776655

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.99  E-value=0.0034  Score=55.11  Aligned_cols=157  Identities=14%  Similarity=0.091  Sum_probs=90.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|++.|+++  .+..+.++...   .++..+. +-+|.          .+.+
T Consensus         6 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           6 GKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45778889999999999999999997  899999876  23333344321   2333332 11221          1334


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.... +  ..+..+   .+..|    ....+...+.|.+....+.||+++......           + 
T Consensus        81 G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~-----------~-  148 (251)
T d1zk4a1          81 GPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV-----------G-  148 (251)
T ss_dssp             SSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS-----------C-
T ss_pred             CCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceec-----------c-
Confidence            578999999986432 2  233332   33344    455677788888777667777776543211           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|......++.|++-.+
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I  185 (251)
T d1zk4a1         149 DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTV  185 (251)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEE
Confidence            2221122222111233456666654345667766555

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.94  E-value=0.0011  Score=58.17  Aligned_cols=154  Identities=13%  Similarity=0.116  Sum_probs=88.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc------cccccCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ------LGQALEDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d------~~~al~~a   97 (358)
                      +.+++.|+||++.+|..++..|+..+.  +|++.|+++  .+....++...      ..+. +-+|      ..+.+..-
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~------~~~~~Dv~~~~~v~~~~~~~g~i   75 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGI------EPVCVDLGDWDATEKALGGIGPV   75 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTC------EEEECCTTCHHHHHHHHTTCCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCC------eEEEEeCCCHHHHHHHHHHcCCC
Confidence            346889999999999999999999997  899999875  22223333221      1111 1111      12345688


Q ss_pred             CEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCC
Q 018314           98 DVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (358)
Q Consensus        98 DiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~  167 (358)
                      |++|..||.....   ..+..   ..+..|    ..+.+...+.+.+....+.+|+++......           + .|.
T Consensus        76 DilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~-----------~-~~~  143 (242)
T d1cyda_          76 DLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-----------T-FPN  143 (242)
T ss_dssp             SEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-----------C-CTT
T ss_pred             eEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-----------c-CCc
Confidence            9999999874422   22322   233344    445566677666666667777765543211           1 121


Q ss_pred             CceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      .-.++.+.-.-..+-+.+|..+  .++.|++-.+-
T Consensus       144 ~~~Y~asKaal~~lt~~lA~e~--~~~gIrvN~I~  176 (242)
T d1cyda_         144 LITYSSTKGAMTMLTKAMAMEL--GPHKIRVNSVN  176 (242)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHH--GGGTEEEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHHh--CccCeecccCC
Confidence            1122222211234567777776  46667766553

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.93  E-value=0.0039  Score=54.69  Aligned_cols=116  Identities=23%  Similarity=0.334  Sum_probs=73.7

Q ss_pred             ceE-EEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        29 ~KI-~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      +|| .|+||++++|..++..|+..|.  .|++.|+++  .+..+.++.+...  ++..+. +-+|          ..+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTL   76 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence            477 5679999999999999999997  899999986  3344445554321  232221 1111          12335


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ..-|++|..||.... +  ..+..   ..+..|    ....+...+.+.+....+.|++++...
T Consensus        77 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~  140 (255)
T d1gega_          77 GGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQA  140 (255)
T ss_dssp             TCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             CCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchh
Confidence            689999999987432 2  23322   234444    455567777778887778777766443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00042  Score=56.89  Aligned_cols=43  Identities=26%  Similarity=0.336  Sum_probs=34.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhh
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVG   73 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~   73 (358)
                      |||+|||++|.+|.++|..|+..++  +|+++++++  ....+.++.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence            7999996569999999999999998  999999876  233344444

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00096  Score=59.70  Aligned_cols=160  Identities=13%  Similarity=0.106  Sum_probs=90.8

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                      +||.|+||+|++|++++..|...+.  ++++.|....    .|+.+..   .+.      +.. .-.+.|+|++.|+...
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~---~~~------~~~-~~~~~d~v~~~a~~~~   66 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR---AVH------DFF-ASERIDQVYLAAAKVG   66 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH---HHH------HHH-HHHCCSEEEECCCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH---HHH------HHH-hhcCCCEEEEcchhcc
Confidence            4999999999999999999999886  5666665431    0111100   000      000 1235688888875432


Q ss_pred             CC---CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHH----HHHH-HHHhCCCCCCceEeeccccHHH
Q 018314          109 KP---GMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPI----AAEV-FKKAGTYNEKKLFGVTTLDVVR  180 (358)
Q Consensus       109 ~~---g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~----~~~~-~~~sg~~~~~kviG~t~lds~R  180 (358)
                      ..   .....+.+..|+.....+...+.+++-.-+|. + ..+.+....    +.|- .......+++..+|.+.+...+
T Consensus        67 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~-~-SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~  144 (315)
T d1e6ua_          67 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLF-L-GSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIK  144 (315)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-E-CCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-E-CCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHH
Confidence            11   12346677889999999999999887544332 2 222111000    0000 0000001223346666555666


Q ss_pred             HHHHHHHHcCCCCCCCc-eEEEeecCC
Q 018314          181 AKTFYAGKANVNVAEVN-VPVVGGHAG  206 (358)
Q Consensus       181 ~~~~la~~l~v~~~~v~-~~v~G~hg~  206 (358)
                      +...+.+..|++..-++ ..|+|.++.
T Consensus       145 ~~~~~~~~~gl~~~ilR~~~vyGp~~~  171 (315)
T d1e6ua_         145 LCESYNRQYGRDYRSVMPTNLYGPHDN  171 (315)
T ss_dssp             HHHHHHHHHCCEEEEEEECEEESTTCC
T ss_pred             HHHHHHHHhCCCEEEEeeccEECCCCC
Confidence            66666777787766666 457887653

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.011  Score=51.62  Aligned_cols=121  Identities=21%  Similarity=0.293  Sum_probs=77.0

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQ   92 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~   92 (358)
                      -+.+-+.|+||++++|..++..|+..|.  .|++.|+++  .+..+.++....  .++..+. +-+|.          .+
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   80 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA   80 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3455788889999999999999999997  899999976  334444554322  2333222 11222          13


Q ss_pred             ccCCCCEEEEcCCCCCCCC--CCHH----HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           93 ALEDSDVVIIPAGVPRKPG--MTRD----DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~~g--~~r~----~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      .+..-|++|..||......  ....    +.+.-|    .-..+.+.+.+.+.. .+.||+++......
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~~~  148 (244)
T d1yb1a_          81 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAGHV  148 (244)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-CC
T ss_pred             HcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchhcC
Confidence            4567999999998754332  1222    223333    556677888887654 67778777776543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.81  E-value=0.0027  Score=56.10  Aligned_cols=157  Identities=13%  Similarity=0.134  Sum_probs=91.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---cc-------cc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---LG-------QA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a   93 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|++.   .+....++....  .++..+. +-+|   .+       +.
T Consensus         7 gK~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            34678889999999999999999997  899999875   233344444332  1233221 1111   11       23


Q ss_pred             cCCCCEEEEcCCCCCCC---CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           94 LEDSDVVIIPAGVPRKP---GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~---g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      +..-|++|..||.....   ..+..+   .+..|    ....+...+.+.+....+.|++++......           +
T Consensus        83 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~-----------~  151 (261)
T d1geea_          83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKI-----------P  151 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS-----------C
T ss_pred             hCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcc-----------c
Confidence            35789999999875322   233332   34444    556678888888777666666666543211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                       .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+-
T Consensus       152 -~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  187 (261)
T d1geea_         152 -WPLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CccccccccCCccchhhHHHHHHHhh--hhCcEEEEEe
Confidence             22211222222222456677777763  6667766553

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.00097  Score=53.84  Aligned_cols=61  Identities=20%  Similarity=0.372  Sum_probs=48.0

Q ss_pred             cccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCE
Q 018314           20 GYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDV   99 (358)
Q Consensus        20 ~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDi   99 (358)
                      +|.++...++||+|||+.|.||..++..|...++  +|..||++....                      ....+.++|+
T Consensus         1 g~~~~~~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~~----------------------~~~~~~~~~~   56 (152)
T d2pv7a2           1 GFKTINSDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWAV----------------------AESILANADV   56 (152)
T ss_dssp             CCCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGGG----------------------HHHHHTTCSE
T ss_pred             CCcccCCCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEecccccccc----------------------cchhhhhccc
Confidence            3667777888999999449999999999999998  999999865210                      1245678888


Q ss_pred             EEEcC
Q 018314          100 VIIPA  104 (358)
Q Consensus       100 VIi~a  104 (358)
                      ++.+.
T Consensus        57 v~~~~   61 (152)
T d2pv7a2          57 VIVSV   61 (152)
T ss_dssp             EEECS
T ss_pred             ccccc
Confidence            88875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00076  Score=50.17  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=49.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +.+||+|+|+ |..|.+++..|...+.  ++..+|.+.......++.+   ...+..  +..+ ...+.+.|+||++-|+
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~---~~~~~~--~~~~-~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPE---AVERHT--GSLN-DEWLMAADLIVASPGI   74 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCT---TSCEEE--SBCC-HHHHHHCSEEEECTTS
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhh---ccceee--cccc-hhhhccCCEEEECCCC
Confidence            3458999998 9999999999999886  8999998652111122222   112222  1112 3567899999999888


Q ss_pred             CC
Q 018314          107 PR  108 (358)
Q Consensus       107 ~~  108 (358)
                      |.
T Consensus        75 ~~   76 (93)
T d2jfga1          75 AL   76 (93)
T ss_dssp             CT
T ss_pred             CC
Confidence            74

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=96.70  E-value=0.00054  Score=60.29  Aligned_cols=99  Identities=16%  Similarity=0.184  Sum_probs=63.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~  106 (358)
                      |||.|+||+|+||++++..|...+   +++-.|.+... ...|+.+            ..++++.++  +.|+||++||.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999888776   46666665411 0011111            112234454  45999999985


Q ss_pred             CCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          107 PRK--PGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       107 ~~~--~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ...  ...........|......+....++.+.  +++.++
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~~~~s  103 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             ccccccccCccccccccccccccchhhhhcccc--cccccc
Confidence            421  1234556678888888888888877653  444443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.69  E-value=0.0022  Score=53.86  Aligned_cols=103  Identities=18%  Similarity=0.196  Sum_probs=59.0

Q ss_pred             chhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCc--
Q 018314            3 SSVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRS--   79 (358)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~--   79 (358)
                      .+|+..-..|.|+..-.--..--.++-||.|||| |.+|.+-+......+-  .+..+|++. ...+..++.......  
T Consensus         4 ~av~~aa~~l~k~~~~l~~~~g~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~   80 (183)
T d1l7da1           4 RAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDD   80 (183)
T ss_dssp             HHHHHHHHHCSSCSSCEEETTEEECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC--
T ss_pred             HHHHHHHHHhhhhcCCcccccCCcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEec
Confidence            3455555556554321111111156789999998 9999988877776664  899999987 444444443211000  


Q ss_pred             ----cEEE---Ee----------cCCccccccCCCCEEEEcCCCCC
Q 018314           80 ----EVAG---YM----------GNDQLGQALEDSDVVIIPAGVPR  108 (358)
Q Consensus        80 ----~v~~---~~----------~~~d~~~al~~aDiVIi~ag~~~  108 (358)
                          ..+.   +.          ....+.+.+++||+||.++-.|-
T Consensus        81 ~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~talipG  126 (183)
T d1l7da1          81 EAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPG  126 (183)
T ss_dssp             ---------------------CCHHHHHHHHHTTCSEEEECCCCTT
T ss_pred             cccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhheeeeecCC
Confidence                0000   00          00123345899999999987664

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.61  E-value=0.012  Score=51.52  Aligned_cols=154  Identities=19%  Similarity=0.219  Sum_probs=89.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..+.  +|++.|+++  .+....++..     ++..+. +-+|.          .+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~-----~~~~~~~Dvt~~~~v~~~~~~~~~~   76 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGP-----AACAIALDVTDQASIDRCVAELLDR   76 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            345788899999999999999999997  899999876  3333444432     122211 11111          123


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           94 LEDSDVVIIPAGVPRK-P--GMTR---DDLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      +..-|++|..||.... +  ..+.   ...+..|+    -+.+.+++.+.+....+.||+++......           +
T Consensus        77 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~-----------~  145 (256)
T d1k2wa_          77 WGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRR-----------G  145 (256)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-----------C
T ss_pred             hCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcc-----------c
Confidence            4578999999986432 2  2232   23344553    45567777777766677778776543211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       146 -~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  180 (256)
T d1k2wa_         146 -EALVGVYCATKAAVISLTQSAGLNLI--RHGINVNAI  180 (256)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -cccccchhhhhhHHHHHHHHHHHHhc--ccCeEEEEE
Confidence             12111222221112345677777764  566765544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.59  E-value=0.00073  Score=55.16  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=46.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC---CccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN---DQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~---~d~~~al~~aDiVIi~a  104 (358)
                      .+||.|+|| |.||.++|..|...++  +|+++|++..  .+.++...... ........   ....+.+...|+++.+.
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~--~a~~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLE--SAKKLSAGVQH-STPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHH--HHHHHHTTCTT-EEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChH--HHHHHHhcccc-cccccccccchhhhHhhhhccceeEeec
Confidence            359999998 9999999999999998  8999998753  23334332211 11111111   12345678889888764

>d1vjta2 d.162.1.2 (A:192-469) Putative alpha-glucosidase TM0752 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: AglA-like glucosidase
domain: Putative alpha-glucosidase TM0752
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.005  Score=54.98  Aligned_cols=55  Identities=13%  Similarity=-0.016  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHccCCCCCcEEEeee-ecCCC---CCccEEEEeEEEcCCcEEEEecCCCCCH
Q 018314          257 YAGAIFADACLKGLNGVPDVVECSF-VQSTV---TELPFFASKVRLGKNGVEEVLGLGPLSD  314 (358)
Q Consensus       257 ~a~~~li~ail~~~~~~~~v~~~s~-~~~~~---~~d~~~s~Pv~vg~~Gv~~i~~l~~L~~  314 (358)
                      ..++++|+||.+|.+   .++.+++ ++|.+   |+|.++++||+|+++|+.++--.+.++.
T Consensus       153 e~a~~ii~ai~~~~~---~~~~vNv~N~G~I~nLp~davVEVpc~Vd~~Gi~P~~vg~~~p~  211 (278)
T d1vjta2         153 EQHIPFINAIANNKR---VRLFLNVENQGTLKDFPDDVVMELPVWVDCCGIHREKVEPDLTH  211 (278)
T ss_dssp             CSHHHHHHHHHHCCC---EEEEEEEECTTSSTTSCSSSEEEEEEEEETTEEEECCCCSCCCH
T ss_pred             HHHHHHHHHHhCCCC---eEEEEECCCCCcCCCCCchhheEeEEEEeCCceeeeecCCCChH
Confidence            456899999999975   3444444 45654   8899999999999999999843323444

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0016  Score=58.89  Aligned_cols=166  Identities=10%  Similarity=0.016  Sum_probs=93.5

Q ss_pred             ceE-EEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcC---CCCccEEEEecC-Cc---ccccc--C
Q 018314           29 RKV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHI---NTRSEVAGYMGN-DQ---LGQAL--E   95 (358)
Q Consensus        29 ~KI-~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~---~~~~~v~~~~~~-~d---~~~al--~   95 (358)
                      +|| .|+||+|++|++++..|...++  +|+-+|+...   .+...++...   ....+++.+.+. .|   ..+++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            489 6999999999999999999988  9999998541   1111111111   112244444211 11   11223  3


Q ss_pred             CCCEEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCC-C-eEEEEee------CCCC-cchHHHHHHHHHhCC
Q 018314           96 DSDVVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP-N-AIVNMIS------NPVN-STVPIAAEVFKKAGT  164 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p-~-a~iiv~t------NP~d-~~t~~~~~~~~~sg~  164 (358)
                      +.|+|++.++.....  -....+....|+.-...+.+.+++++- + ..+|.+|      +|-+ .+++       .+. 
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E-------~~~-  150 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKE-------TTP-  150 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCT-------TSC-
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCC-------CCC-
Confidence            556777776543211  123455678898888999999988763 3 3455443      2221 1211       122 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCc-eEEEeec
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVN-VPVVGGH  204 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  204 (358)
                      +.|...+|.+.+...++-...++..+++...++ ..++|..
T Consensus       151 ~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         151 FYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            445566777655555665555677776544444 2366753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.55  E-value=0.011  Score=51.57  Aligned_cols=114  Identities=16%  Similarity=0.195  Sum_probs=68.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---c-------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (358)
                      .+.+.|+||++++|..++..|+..|.  .|++.|+++  ....+.++.+.. ..++..+. +-+|   .       .+.+
T Consensus         5 gK~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45788999999999999999999997  899999876  233333443221 11232221 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEee
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      ..-|++|..||.....   ..+..   ..+..|    ..+.+.+.+.|.+.. .+.+|+++
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            5789999999974322   22332   233444    455677777776554 44555554

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0023  Score=58.08  Aligned_cols=110  Identities=20%  Similarity=0.112  Sum_probs=67.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--------cHHHHHHhhcCCCCccEEEEecC-C---ccccccCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--------TPGVAADVGHINTRSEVAGYMGN-D---QLGQALED   96 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--------~~~~~~dl~~~~~~~~v~~~~~~-~---d~~~al~~   96 (358)
                      +||.|+||+|+||++++..|...++  +|+.+|...        .......+.... ..+++.+... .   .+.+++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            3899999999999999999998887  888888421        011111111111 1133333211 2   22344545


Q ss_pred             CC--EEEEcCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Q 018314           97 SD--VVIIPAGVPRKP--GMTRDDLFNINAGIVKDLCSAIAKYCPNAIV  141 (358)
Q Consensus        97 aD--iVIi~ag~~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~i  141 (358)
                      .|  +|+++|+.+...  -....+.+..|+.....+....++++.+-++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            55  566777754311  1134566788999999999999988765433

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.51  E-value=0.0016  Score=60.19  Aligned_cols=95  Identities=17%  Similarity=0.249  Sum_probs=65.8

Q ss_pred             hhhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccE
Q 018314            4 SVLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEV   81 (358)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v   81 (358)
                      +.|-.++|-|-.+-+.++++.+ ....++|||+ |..+..-+..+...-.+.+|++||++.  ....+.++.... ...+
T Consensus       105 ~~LTa~RTaA~salaa~~LA~~-da~~l~iiG~-G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~-g~~v  181 (340)
T d1x7da_         105 TIATALRTAATSLMAAQALARP-NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYS-GLTI  181 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCT-TCEE
T ss_pred             hhhhhhHHHHHHHHHHHHhhcc-CCceEEEEcc-cHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhcc-CCCc
Confidence            4556677777777777777665 4468999997 988877666554433378999999986  344555665322 2345


Q ss_pred             EEEecCCccccccCCCCEEEEcC
Q 018314           82 AGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        82 ~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..   .+++++++++||+|+.+-
T Consensus       182 ~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         182 RR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             EE---CSSHHHHHTTCSEEEECC
T ss_pred             ee---cCCHHHHHhcCCceeecc
Confidence            44   356789999999998743

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.51  E-value=0.002  Score=55.91  Aligned_cols=113  Identities=20%  Similarity=0.311  Sum_probs=68.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      +.+++.|+||++.+|..++..|+..+.  +|++.|+++.  ...+..+.....+++.  .-+...+.+..-|++|..||.
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~--~l~~~~~~~~~~Dv~~--~~~~~~~~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEE--LLKRSGHRYVVCDLRK--DLDLLFEKVKEVDILVLNAGG   76 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHH--HHHHTCSEEEECCTTT--CHHHHHHHSCCCSEEEECCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH--HHHhcCCcEEEcchHH--HHHHHHHHhCCCcEEEecccc
Confidence            346899999999999999999999997  8999998741  1111111100001100  001234567889999999997


Q ss_pred             CCCC---CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314          107 PRKP---GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus       107 ~~~~---g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +...   ..+..+   .+..|    ..+.+.+.+.+++.. .+.+|+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S  125 (234)
T d1o5ia_          77 PKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  125 (234)
T ss_dssp             CCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-ccccccccc
Confidence            6432   233322   23344    345677777777654 455565543

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.49  E-value=0.0015  Score=57.66  Aligned_cols=77  Identities=16%  Similarity=0.065  Sum_probs=49.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--c-HHHHHHhhcCCCCccEEEEe----cCCccccccCCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--T-PGVAADVGHINTRSEVAGYM----GNDQLGQALEDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~-~~~~~dl~~~~~~~~v~~~~----~~~d~~~al~~aDi   99 (358)
                      +++||.|+||+|++|++++..|...|+  +|+.++++.  . ......+.... ...++...    +..++.+++++++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~-~~~v~~v~~d~~d~~~~~~~~~~~~~   78 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFK-QLGAKLIEASLDDHQRLVDALKQVDV   78 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHH-TTTCEEECCCSSCHHHHHHHHTTCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhc-cCCcEEEEeecccchhhhhhccCcch
Confidence            456899999999999999999999887  888888765  1 11111111111 01222221    11234568899999


Q ss_pred             EEEcCCC
Q 018314          100 VIIPAGV  106 (358)
Q Consensus       100 VIi~ag~  106 (358)
                      ++..++.
T Consensus        79 ~~~~~~~   85 (312)
T d1qyda_          79 VISALAG   85 (312)
T ss_dssp             EEECCCC
T ss_pred             hhhhhhh
Confidence            9997753

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.48  E-value=0.00098  Score=53.93  Aligned_cols=72  Identities=24%  Similarity=0.291  Sum_probs=47.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      ++|||+|+||+|.+|..+...|.+.+ +..+|.++..+...|+..  ...  ...+....  .+ .+.+.++|+++++.+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i--~~~--~~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM--GFA--ESSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE--EET--TEEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce--eec--cccchhcc--ch-hhhhccceEEEecCC
Confidence            36899999999999999999888654 355888887654333321  111  12233221  12 356789999998764

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.016  Score=50.58  Aligned_cols=117  Identities=19%  Similarity=0.132  Sum_probs=73.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++  ......++.......++..+. +-+|.          .+.+
T Consensus         3 GKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           3 GKVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            45678889999999999999999997  899999976  233344454432222344332 11221          1234


Q ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHH----HHHHHHHHHHHHhhC--CCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRKPGMTRDDLFNIN----AGIVKDLCSAIAKYC--PNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~g~~r~~~~~~N----~~i~~~i~~~i~~~~--p~a~iiv~tNP~  148 (358)
                      ..-|++|..||.....  +..+.+..|    ....+...+.+.+..  ..+.||+++...
T Consensus        81 G~iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          81 GRLDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             SCCCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CCcCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            5789999999875433  233344444    456677777776654  347777776543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.39  E-value=0.0016  Score=56.81  Aligned_cols=76  Identities=24%  Similarity=0.204  Sum_probs=48.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----HHHHHHhhcCCCCccEEEEec----CCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDi   99 (358)
                      ++||.|+||+|++|++++..|...++  +|+.++++..    ......+.+... ..+....+    ..+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999887  8999998651    111111211110 11222111    1223467899999


Q ss_pred             EEEcCCC
Q 018314          100 VIIPAGV  106 (358)
Q Consensus       100 VIi~ag~  106 (358)
                      |+..++.
T Consensus        80 vi~~~~~   86 (307)
T d1qyca_          80 VISTVGS   86 (307)
T ss_dssp             EEECCCG
T ss_pred             eeecccc
Confidence            9988754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.37  E-value=0.017  Score=52.08  Aligned_cols=104  Identities=18%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecC-Cc----cccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGN-DQ----LGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~-~d----~~~al~~aDiVI  101 (358)
                      +.++|.|+||+|++|++++..|...++  +|+.+-++........+....   .++...+. .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            456899999999999999999999887  788886654222222333221   23333211 12    345788999988


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +.....   .       ..|....+.++....+.+-.-+++..|
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            764221   1       133444455666666665333344333

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.34  E-value=0.022  Score=49.79  Aligned_cols=158  Identities=16%  Similarity=0.191  Sum_probs=88.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .+.+.|+||++++|..++..|+..|.  .|++.|+++  .+....++.......++..+. +-+|.          .+.+
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           4 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34788889999999999999999997  899999876  233333333222222333321 11221          1234


Q ss_pred             CCCCEEEEcCCCCC--CC--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 EDSDVVIIPAGVPR--KP--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~~aDiVIi~ag~~~--~~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..-|++|..||...  .+  ..+..   ..+..|    ....+.+.+.+++.. .+.||+++......           +
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-----------~  149 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGIR-----------G  149 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGTS-----------B
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhcc-----------C
Confidence            67899999998642  22  23322   233444    445566667776654 45566665433211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                       .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+-
T Consensus       150 -~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~  185 (258)
T d1iy8a_         150 -IGNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIA  185 (258)
T ss_dssp             -CSSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEe
Confidence             22111222221112345677777763  6677766553

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.33  E-value=0.0004  Score=62.80  Aligned_cols=173  Identities=9%  Similarity=-0.012  Sum_probs=89.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc----H---HHHHHhhcCCCCccEEEEec-CCc---ccccc--C
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT----P---GVAADVGHINTRSEVAGYMG-NDQ---LGQAL--E   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~----~---~~~~dl~~~~~~~~v~~~~~-~~d---~~~al--~   95 (358)
                      +|+.|+||+|++|++++..|...++  +|+-+|....    .   ....+..... ...++...+ ..+   +.+++  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVN-KALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhcc-ccceEEEEccccCHHHHHHHHhhh
Confidence            4788999999999999999999998  9999997431    0   0001111111 123333221 112   11222  4


Q ss_pred             CCCEEEEcCCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCc
Q 018314           96 DSDVVIIPAGVPRKPG--MTRDDLFNINAGIVKDLCSAIAKYC----PNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKK  169 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g--~~r~~~~~~N~~i~~~i~~~i~~~~----p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~k  169 (358)
                      +.|+||++|+......  ..-......|......+...+++..    ...+++ .+.........-...-.... +.|..
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~ss~~~~~~~~~~~~E~~~-~~p~~  156 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYY-QAGSSEMFGSTPPPQSETTP-FHPRS  156 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEE-EEEEGGGGTTSCSSBCTTSC-CCCCS
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeee-ecccceecccCCCCCCCCCC-CCCcc
Confidence            6699999997643221  2234455667666666666655432    223333 22111100000000000112 34556


Q ss_pred             eEeeccccHHHHHHHHHHHcCCCCCCCce-EEEeecCC
Q 018314          170 LFGVTTLDVVRAKTFYAGKANVNVAEVNV-PVVGGHAG  206 (358)
Q Consensus       170 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~hg~  206 (358)
                      ..|.+.+....+-...++..+++...++. .|+|.+..
T Consensus       157 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         157 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            66776555666666667777776555553 47786543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.33  E-value=0.02  Score=50.00  Aligned_cols=117  Identities=16%  Similarity=0.215  Sum_probs=72.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..|.  +|++.|+++  ......++.... ..++..+. +-+|.          .+.
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            445788899999999999999999997  899999986  223333332211 11222221 11111          134


Q ss_pred             cCCCCEEEEcCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tN  146 (358)
                      +..-|++|..||.... +  ..+..   ..+..|    ....+.+.+.+.+....+.+++.+.
T Consensus        85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            5679999999986432 2  23332   234444    3456777888877777776665544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.30  E-value=0.03  Score=42.46  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=48.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      -+.+||.|+|+ |.+|...+..|...+.  +|.+++......... +.+..   +++......+ .+.+.++++|+.+.
T Consensus        10 l~~k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~~-~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          10 LRDRDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFTV-WANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             CBTCEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHHH-HHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             eCCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHHH-HHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            34569999998 9999999999998886  899999865433322 32222   2332222222 46799999999875

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.27  E-value=0.002  Score=52.92  Aligned_cols=104  Identities=25%  Similarity=0.334  Sum_probs=63.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH--HHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP--GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~--~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +..||.|||| |.+|..++..|...+. .++.++.+...+  ..+..+.     .....   -+++.+++.++|+||.+.
T Consensus        23 ~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~l~~~~~-----~~~~~---~~~~~~~l~~~Divi~at   92 (159)
T d1gpja2          23 HDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAVELARDLG-----GEAVR---FDELVDHLARSDVVVSAT   92 (159)
T ss_dssp             TTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHHHHHHHHT-----CEECC---GGGHHHHHHTCSEEEECC
T ss_pred             ccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHHHHHhhh-----ccccc---chhHHHHhccCCEEEEec
Confidence            3459999998 9999999998888763 589999875422  2222222     12211   246678899999999987


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC--CCeEEEEeeCCCCcch
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYC--PNAIVNMISNPVNSTV  152 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~--p~a~iiv~tNP~d~~t  152 (358)
                      +.|..- .+        .+.++   ..+++-.  ..-++|=.+.|-|+=.
T Consensus        93 ss~~~i-i~--------~~~i~---~~~~~r~~~~~~~iiDlavPr~vd~  130 (159)
T d1gpja2          93 AAPHPV-IH--------VDDVR---EALRKRDRRSPILIIDIANPRDVEE  130 (159)
T ss_dssp             SSSSCC-BC--------HHHHH---HHHHHCSSCCCEEEEECCSSCSBCT
T ss_pred             CCCCcc-cc--------HhhhH---HHHHhcccCCCeEEEeecCCCCcCh
Confidence            654311 11        11111   2233222  2346677899977653

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.25  E-value=0.0022  Score=53.82  Aligned_cols=76  Identities=22%  Similarity=0.322  Sum_probs=46.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH-Hhh-cCCCCccEEEEecCCccccccCCCCEEEE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HINTRSEVAGYMGNDQLGQALEDSDVVII  102 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-dl~-~~~~~~~v~~~~~~~d~~~al~~aDiVIi  102 (358)
                      +.+++||+|+||+|.+|.-+...|...+.+ ||..+-.+...|+.. +.. +.... ......  ....+.++++|+|+.
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQ-DLPNLV--AVKDADFSNVDAVFC   77 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTS-CCCCCB--CGGGCCGGGCSEEEE
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCcccccccccccc-ccccch--hhhhhhhcccceeee
Confidence            456789999999999999999999998865 666665444222211 111 11110 111111  112355789999998


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      +.
T Consensus        78 al   79 (183)
T d2cvoa1          78 CL   79 (183)
T ss_dssp             CC
T ss_pred             cc
Confidence            75

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.22  E-value=0.0055  Score=53.62  Aligned_cols=157  Identities=17%  Similarity=0.173  Sum_probs=87.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEec----CCccccccCCCCEEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVVII  102 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiVIi  102 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|++.|+++. ...+..+.......++.-...    .....+.+..-|++|.
T Consensus         5 GK~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVn   82 (248)
T d2d1ya1           5 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVN   82 (248)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEE
Confidence            45788999999999999999999997  8999999863 222222221111111110000    0112234568999999


Q ss_pred             cCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314          103 PAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus       103 ~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      .||.... +  ..+..   ..+.-|    ..+.+.+.+.|++.. .+.||+++......           + .|..-.++
T Consensus        83 nAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~~-----------~-~~~~~~Y~  149 (248)
T d2d1ya1          83 NAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGLF-----------A-EQENAAYN  149 (248)
T ss_dssp             CCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTS-----------B-CTTBHHHH
T ss_pred             eCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-cccccccccccccc-----------c-ccccchhH
Confidence            9986432 1  22322   233444    455677777776654 56777776544211           1 22211222


Q ss_pred             eccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          173 VTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       173 ~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+.-.-..|-+.+|+.++  ++.|++-.+
T Consensus       150 asKaal~~ltk~lA~el~--~~gIrVN~I  176 (248)
T d2d1ya1         150 ASKGGLVNLTRSLALDLA--PLRIRVNAV  176 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            221122345677777774  566766555

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.21  E-value=0.0086  Score=50.53  Aligned_cols=100  Identities=21%  Similarity=0.315  Sum_probs=64.3

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ...+-..++|+|||. |.+|+.++..+..-+.  +|..||............       +..   ..++++.++.||+|+
T Consensus        43 ~~~eL~gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~~---~~~l~~ll~~sD~i~  109 (193)
T d1mx3a1          43 GAARIRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVT  109 (193)
T ss_dssp             TCCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEE
T ss_pred             CceeeeCceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------ccc---ccchhhccccCCEEE
Confidence            344456779999998 9999999999986555  999999865322211111       221   245678899999999


Q ss_pred             EcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          102 IPAGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       102 i~ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +..-. +...++       -|.       +.+....|++++|+++=--
T Consensus       110 ~~~plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~sRG~  143 (193)
T d1mx3a1         110 LHCGLNEHNHHL-------IND-------FTVKQMRQGAFLVNTARGG  143 (193)
T ss_dssp             ECCCCCTTCTTS-------BSH-------HHHTTSCTTEEEEECSCTT
T ss_pred             Eeecccccchhh-------hhH-------HHHhccCCCCeEEecCCce
Confidence            97532 222232       111       1244456889999886554

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.21  E-value=0.0041  Score=54.27  Aligned_cols=157  Identities=21%  Similarity=0.181  Sum_probs=83.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEec----CCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMG----NDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~----~~d~~~al~~aDiV  100 (358)
                      +.+++.|+||++.+|..++..|+..+.  +|++.|+++.  +....++.......++.-...    -....+.+..-|++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   81 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGV   81 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEE
Confidence            456889999999999999999999997  8999998762  222222221000001000000    00112334578999


Q ss_pred             EEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314          101 IIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus       101 Ii~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      |..||.....   ..+..   ..+..|    .-+.+.+.+.+.+.. .+.+++.+. ..           ..+ .|..-.
T Consensus        82 VnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~ss-~~-----------~~~-~~~~~~  147 (242)
T d1ulsa_          82 VHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTAS-RV-----------YLG-NLGQAN  147 (242)
T ss_dssp             EECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECC-GG-----------GGC-CTTCHH
T ss_pred             EECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeecc-cc-----------ccC-CCCCcc
Confidence            9999975422   23322   234444    344566666665543 344444332 11           112 333333


Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       148 Y~asKaal~~ltk~lA~el--a~~gIrVN~I  176 (242)
T d1ulsa_         148 YAASMAGVVGLTRTLALEL--GRWGIRVNTL  176 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHH--hhhCcEEEEE
Confidence            3333222234567777776  3666776555

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.20  E-value=0.0012  Score=55.24  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=44.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHH-Hhh-cCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAA-DVG-HINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~-dl~-~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |+||+|+||+|.+|.-+...|...+.+ ||..+=.+...|+.. ++. +......+..    .+.++..+++|+|+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~----~~~~~~~~~~dvvf~a~   74 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSILSE----FDPEKVSKNCDVLFTAL   74 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBCBC----CCHHHHHHHCSEEEECC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhccccccc----cCHhHhccccceEEEcc
Confidence            689999999999999999999988865 555553333223222 121 1111112221    23344557899999875

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.14  E-value=0.067  Score=46.54  Aligned_cols=156  Identities=13%  Similarity=0.068  Sum_probs=86.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEE-ecCCcc----------ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY-MGNDQL----------GQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~-~~~~d~----------~~a   93 (358)
                      +.+++.|+||++.+|..++..|+..+.  +|++.|+++  .+....++.....  .+..+ .+-+|.          .+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~--~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeecCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999997  899999886  2333334443322  22221 111111          122


Q ss_pred             c-CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           94 L-EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        94 l-~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      + ..-|++|..||.....   ..+..   ..+..|    ....+.+.+.+.+.. .+.+|+++-.....           
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~-~g~ii~isS~~~~~-----------  148 (258)
T d1ae1a_          81 FDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSIAGFS-----------  148 (258)
T ss_dssp             TTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCGGGTS-----------
T ss_pred             hCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccc-cccccccccccccc-----------
Confidence            3 2378888888865422   12222   223333    445566666766654 55566665444211           


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .|..-.++.+.-.-..|-+.+|+.++  ++.|++-.+
T Consensus       149 ~-~~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  184 (258)
T d1ae1a_         149 A-LPSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSV  184 (258)
T ss_dssp             C-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             c-cccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEE
Confidence            1 22222222221112345677787774  566665444

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0064  Score=50.75  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=34.1

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ....+++||+|||| |..|.+.|..|++.++  ++.|||..+
T Consensus        38 ~~~~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~   76 (179)
T d1ps9a3          38 LPAVQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHS   76 (179)
T ss_dssp             CSCSSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSS
T ss_pred             CCCCCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccC
Confidence            33456789999998 9999999999999998  999999865

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.035  Score=48.40  Aligned_cols=156  Identities=13%  Similarity=0.153  Sum_probs=89.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..|.  .|++.|+++  .+..+.++.....  ++..+. +-+|.          .+.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~   85 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            455788889999999999999999997  899999876  2333444544321  222221 11221          233


Q ss_pred             cCCCCEEEEcCCCCCCC--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           94 LEDSDVVIIPAGVPRKP--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      +..-|++|..||.....  +.+..+   .+..|    ..+.+.+.+.+.+.. .+.||+++.-...           .+ 
T Consensus        86 ~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~-----------~~-  152 (255)
T d1fmca_          86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAE-----------NK-  152 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------CC-
T ss_pred             cCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchh-----------cc-
Confidence            46899999999864322  334332   23344    445677777777765 4455555432211           11 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       153 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  187 (255)
T d1fmca_         153 NINMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGI  187 (255)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             ccccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEe
Confidence            22222222222222455677777763  566766555

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0061  Score=53.12  Aligned_cols=152  Identities=18%  Similarity=0.274  Sum_probs=88.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|++.|+++  .+..+.++..     +...+. +-+|          ..+.+
T Consensus         4 gK~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   76 (243)
T d1q7ba_           4 GKIALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGA-----NGKGLMLNVTDPASIESVLEKIRAEF   76 (243)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCC-----CCcEEEEEecCHHHhhhhhhhhhccc
Confidence            34677779999999999999999997  899999876  2333334432     111111 1111          11334


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.....   ..+..   ..+..|    ....+.+.+.|.+.. .+.||+++....           ..+ 
T Consensus        77 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~-----------~~~-  143 (243)
T d1q7ba_          77 GEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG-----------TMG-  143 (243)
T ss_dssp             CSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-
T ss_pred             CCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh-----------cCC-
Confidence            5799999999864322   22322   233444    456677777777654 577777764321           122 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       144 ~~~~~~Y~asKaal~~lt~~lA~ela--~~gIrVN~I  178 (243)
T d1q7ba_         144 NGGQANYAAAKAGLIGFSKSLAREVA--SRGITVNVV  178 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhC--ccCeEEEEE
Confidence            33333333332223456677787763  666766555

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.03  E-value=0.032  Score=48.73  Aligned_cols=157  Identities=17%  Similarity=0.210  Sum_probs=91.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------cccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..+.  .|++.|+++  .+....++....  .++..+. +-+|          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   79 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRD   79 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345788899999999999999999997  899999876  333444554432  2333322 1111          1233


Q ss_pred             cCCCCEEEEcCCCCCC--C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           94 LEDSDVVIIPAGVPRK--P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~--~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      +..-|++|..||....  +  ..+..   ..+..|    .-..+...+.+.+. ..+.||+++....           ..
T Consensus        80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~  147 (260)
T d1zema1          80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------VK  147 (260)
T ss_dssp             HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HS
T ss_pred             hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------cc
Confidence            4689999999986432  2  23322   233444    34556666766654 4567776654321           12


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      + .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+-
T Consensus       148 ~-~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  184 (260)
T d1zema1         148 G-PPNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAIS  184 (260)
T ss_dssp             C-CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             C-CcchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEec
Confidence            2 22222233332223456677787764  6677766553

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.00  E-value=0.013  Score=49.18  Aligned_cols=102  Identities=20%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +...+...++|+|||. |.+|+.++..+..-+.  ++..||............      ....   ..++.+.++.||+|
T Consensus        40 ~~~~~l~g~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~------~~~~---~~~l~~ll~~sD~v  107 (191)
T d1gdha1          40 LVGEKLDNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASY------QATF---HDSLDSLLSVSQFF  107 (191)
T ss_dssp             TCBCCCTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHH------TCEE---CSSHHHHHHHCSEE
T ss_pred             cccceecccceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcc------cccc---cCCHHHHHhhCCeE
Confidence            4445556789999998 9999999988886555  999999865221211111      1111   24567889999999


Q ss_pred             EEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          101 IIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       101 Ii~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ++..- .+...++       -|.       +.++...|++++||++---
T Consensus       108 ~l~~plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~sRG~  142 (191)
T d1gdha1         108 SLNAPSTPETRYF-------FNK-------ATIKSLPQGAIVVNTARGD  142 (191)
T ss_dssp             EECCCCCTTTTTC-------BSH-------HHHTTSCTTEEEEECSCGG
T ss_pred             EecCCCCchHhhe-------ecH-------HHhhCcCCccEEEecCCcc
Confidence            99752 2222232       111       2334456789888876553

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.98  E-value=0.015  Score=46.78  Aligned_cols=61  Identities=18%  Similarity=0.170  Sum_probs=38.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ||++||. |.||+.++..|...++  .+ .++....+.  .++.....  ...     .. .+.+.++|++|+..
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~-~~~~~~~~~--~~~~~~~~--~~~-----~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TL-VWNRTFEKA--LRHQEEFG--SEA-----VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EE-EECSSTHHH--HHHHHHHC--CEE-----CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EE-EEeCCHHHH--HHHHHHcC--Ccc-----cc-cccccceeEEEecc
Confidence            8999997 9999999999988775  44 455443222  22221111  111     11 35678899998874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.025  Score=49.60  Aligned_cols=116  Identities=15%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEec-CCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMG-NDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~-~~d----------~~~al   94 (358)
                      .+++.|+||++++|.++|..|+..|.  +|++.|+++  .+....++..... ..+..+.. ..+          ..+..
T Consensus        14 GK~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          14 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            45899999999999999999999997  899999986  2333333322211 12222211 111          11234


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ...|+++..||.... +  ..+..   ..+..|    ..+.+.+.+.+++.  ++.+++++...
T Consensus        91 g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS~~  152 (269)
T d1xu9a_          91 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSSLA  152 (269)
T ss_dssp             TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEEGG
T ss_pred             CCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEeccch
Confidence            578999998875321 1  12322   223334    45567777777654  46666665433

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.96  E-value=0.022  Score=41.85  Aligned_cols=71  Identities=24%  Similarity=0.270  Sum_probs=51.2

Q ss_pred             CceEEEEcCCCChH-HHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           28 DRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        28 ~~KI~IiGA~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      .|||-+||- |.+| +.+|..|...++  .|.-.|..+.. ....|+....  ++.  .+ .+ .+.++++|+||.+.++
T Consensus         1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~t~~L~~~Gi--~i~--~g-h~-~~~i~~~d~vV~SsAI   70 (89)
T d1j6ua1           1 HMKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETE-RTAYLRKLGI--PIF--VP-HS-ADNWYDPDLVIKTPAV   70 (89)
T ss_dssp             CCEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCH-HHHHHHHTTC--CEE--SS-CC-TTSCCCCSEEEECTTC
T ss_pred             CcEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCCh-hHHHHHHCCC--eEE--ee-ec-ccccCCCCEEEEecCc
Confidence            379999997 8898 477889999998  89999987632 2234665542  332  22 22 4668999999999887


Q ss_pred             CC
Q 018314          107 PR  108 (358)
Q Consensus       107 ~~  108 (358)
                      |.
T Consensus        71 ~~   72 (89)
T d1j6ua1          71 RD   72 (89)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.95  E-value=0.0071  Score=50.52  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=59.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -..++|+|||. |.+|..++..+..-+.  +|.-||....+        ..  ..  .   ..++++.+++||+|++.. 
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~--------~~--~~--~---~~~l~ell~~sDiv~~~~-  100 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKE--------GP--WR--F---TNSLEEALREARAAVCAL-  100 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCC--------SS--SC--C---BSCSHHHHTTCSEEEECC-
T ss_pred             ccCceEEEecc-ccccccceeeeecccc--ccccccccccc--------cc--ee--e---eechhhhhhccchhhccc-
Confidence            45679999998 9999999998886665  99999976421        11  01  1   134678999999999964 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                       |..+. ++. ++  |       .+.++...|++++|+++-.
T Consensus       101 -pl~~~-t~~-li--~-------~~~l~~mk~~ailIN~~RG  130 (181)
T d1qp8a1         101 -PLNKH-TRG-LV--K-------YQHLALMAEDAVFVNVGRA  130 (181)
T ss_dssp             -CCSTT-TTT-CB--C-------HHHHTTSCTTCEEEECSCG
T ss_pred             -ccccc-ccc-cc--c-------cceeeeccccceEEecccc
Confidence             32221 110 01  1       1344555688998887643

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.02  Score=49.75  Aligned_cols=106  Identities=12%  Similarity=0.121  Sum_probs=66.0

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEec---CCccccccCCCCEEEEcCCCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMG---NDQLGQALEDSDVVIIPAGVP  107 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~---~~d~~~al~~aDiVIi~ag~~  107 (358)
                      |.|+||+|++|++++..|+..+. .+|+.+|.-........+.+... ........   .......+.++++|+..|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNI-ADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCC-SEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccch-hhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999873 37888884321111112222211 01110000   000123567899999988766


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC
Q 018314          108 RKPGMTRDDLFNINAGIVKDLCSAIAKYCPN  138 (358)
Q Consensus       108 ~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~  138 (358)
                      .............|......+.......+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            6555666667777788888888887777644

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.91  E-value=0.015  Score=48.07  Aligned_cols=73  Identities=21%  Similarity=0.258  Sum_probs=43.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecC--CcHHHHHHhhc--CC--CCccEEEEecCCccccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIA--NTPGVAADVGH--IN--TRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~--~~~~~~~dl~~--~~--~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      |+||+|+||+|.+|.-+...|..++.+ ||. |.-..  ...++.....+  ..  ....+...   .+......++|+|
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            689999999999999999999998854 443 33221  11222111111  11  11223322   2334456899999


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      +.+.
T Consensus        77 f~al   80 (179)
T d2g17a1          77 FLAT   80 (179)
T ss_dssp             EECS
T ss_pred             eccc
Confidence            9875

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.89  E-value=0.044  Score=48.18  Aligned_cols=115  Identities=15%  Similarity=0.247  Sum_probs=69.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC-ccEEEEec-CCcc----------ccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR-SEVAGYMG-NDQL----------GQA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~-~~v~~~~~-~~d~----------~~a   93 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++  .+..+.++...... .++..+.. -+|.          .+.
T Consensus         4 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           4 GKSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            45788889999999999999999997  899999876  34444455443321 23443321 1121          122


Q ss_pred             cCCCCEEEEcCCCCCCCC-----CCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEee
Q 018314           94 LEDSDVVIIPAGVPRKPG-----MTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~g-----~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +..-|++|..||.....+     ++..   ..+..|    ....+...+.+.+. ..+.+++.+
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s  144 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS  144 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence            346799999998643221     2322   223334    34556777777654 456665543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=95.89  E-value=0.054  Score=47.34  Aligned_cols=155  Identities=18%  Similarity=0.221  Sum_probs=86.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---c-------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++  .+..+.++....   .+..+. +-+|   .       .+.+
T Consensus         6 gKvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           6 DKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            44788889999999999999999997  899999876  333444554322   222221 1112   1       1234


Q ss_pred             CCCCEEEEcCCCCC-CC----CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           95 EDSDVVIIPAGVPR-KP----GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        95 ~~aDiVIi~ag~~~-~~----g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      ..-|++|..||... .+    ..+..   ..+..|    .-..+...+.|.+.. .+.+|+++.......          
T Consensus        81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~~~----------  149 (268)
T d2bgka1          81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSFTA----------  149 (268)
T ss_dssp             SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGTCC----------
T ss_pred             CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccccccccc----------
Confidence            57899999998632 21    22322   233444    455577777776654 455665554432110          


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      + .+..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       150 ~-~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  185 (268)
T d2bgka1         150 G-EGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCV  185 (268)
T ss_dssp             C-TTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             c-cccccccchhHHHHHhCHHHHHHHhC--hhCeEEEec
Confidence            0 11111222222222455677777764  566766555

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.87  E-value=0.058  Score=46.98  Aligned_cols=152  Identities=17%  Similarity=0.177  Sum_probs=87.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---c-------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++  ......++..     ++..+. +-+|   .       .+.+
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           5 GKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999997  899999876  2333333322     222221 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.....   ..+.   ...+..|    .-..+.+.+.+++.. .+.||+++.-....           + 
T Consensus        78 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS~~~~~-----------~-  144 (254)
T d1hdca_          78 GSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISSAAGLM-----------G-  144 (254)
T ss_dssp             SCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------C-
T ss_pred             CCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeecccccchhcc-----------c-
Confidence            5789999999864322   2222   2334444    445577777777654 56777776543211           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       145 ~~~~~~Y~asKaal~~lt~~lA~e~--a~~gIrVN~I  179 (254)
T d1hdca_         145 LALTSSYGASKWGVRGLSKLAAVEL--GTDRIRVNSV  179 (254)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHh--CCCceEEEEe
Confidence            2222222222212234567777765  3566665544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=95.86  E-value=0.054  Score=46.84  Aligned_cols=155  Identities=16%  Similarity=0.211  Sum_probs=87.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL----------GQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~~   96 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++.+.....+....  .++..+. +-+|.          .+.+..
T Consensus         5 gKvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           5 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            34678889999999999999999997  899999976332222233222  1222221 11121          123457


Q ss_pred             CCEEEEcCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      -|++|..||.... +  ..+..   ..+..|    .-+.+.+.+.+++.. .+.||+++.-...           .+ .|
T Consensus        81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~-----------~~-~~  147 (247)
T d2ew8a1          81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTSTTYW-----------LK-IE  147 (247)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGG-----------SC-CS
T ss_pred             CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCccccccchhc-----------cc-Cc
Confidence            8999999987432 2  22322   233444    455677777777765 5667776643321           11 11


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       148 ~~~~Y~asKaal~~ltk~lA~el--a~~gIrVN~I  180 (247)
T d2ew8a1         148 AYTHYISTKAANIGFTRALASDL--GKDGITVNAI  180 (247)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             ccccchhhhccHHHHHHHHHHHh--cccCeEEEEE
Confidence            11122222111234567777776  4666766555

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.068  Score=46.35  Aligned_cols=151  Identities=19%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+.+.|+||++.+|.+++..|+..+.  +|++.|+++.  +....++.+      ...+. +-+|          ..+.+
T Consensus         6 GK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~------~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           6 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCC------CeEEEccCCCHHHHHHHHHHHHHhc
Confidence            45788999999999999999999997  8999998762  223333322      11111 1111          12334


Q ss_pred             CCCCEEEEcCCCCCCC----CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 EDSDVVIIPAGVPRKP----GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~----g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..-|++|..||.....    ..+..   ..+..|    ..+.+...+.|++.  .+.||+++....           ..+
T Consensus        78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~-----------~~~  144 (250)
T d1ydea1          78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG-----------AIG  144 (250)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH-----------HHC
T ss_pred             CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc-----------ccc
Confidence            5789999999854322    22322   223334    55667788888765  366776654321           122


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                       .|..-.++.+.-.-..|-+.+|+.+  .++.|++-.+-
T Consensus       145 -~~~~~~Y~asKaal~~lt~~lA~e~--a~~gIrVN~I~  180 (250)
T d1ydea1         145 -QAQAVPYVATKGAVTAMTKALALDE--SPYGVRVNCIS  180 (250)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHH--GGGTCEEEEEE
T ss_pred             -ccCcchhHHHHhhHHHHHHHHHHHh--cccCeEEEEEe
Confidence             3332233333222245667778776  36677766553

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=95.83  E-value=0.095  Score=45.43  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=68.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEec-CCcHHHHHHhhcCCCCccEEEEe-c-CCc----------cccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDI-ANTPGVAADVGHINTRSEVAGYM-G-NDQ----------LGQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~-~~~~~~~~dl~~~~~~~~v~~~~-~-~~d----------~~~a   93 (358)
                      +.+.|.|+||++++|..+|..|+..+.  .+++.+. ++......++.......++..+. + +.+          ..+.
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence            456899999999999999999999986  5666644 33222222332221112233222 1 111          1123


Q ss_pred             cCCCCEEEEcCCCCCCCCCCHHHHHHHHH----HHHHHHHHHHHhh--CCCeEEEEeeC
Q 018314           94 LEDSDVVIIPAGVPRKPGMTRDDLFNINA----GIVKDLCSAIAKY--CPNAIVNMISN  146 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~g~~r~~~~~~N~----~i~~~i~~~i~~~--~p~a~iiv~tN  146 (358)
                      +...|++|..||....  .+-...+..|+    ...+.+.+.+.+.  .+.+.||+++.
T Consensus        82 ~g~iDilvnnAG~~~~--~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          82 LKTVDILINGAGILDD--HQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             HSCCCEEEECCCCCCT--TCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCCCCEEEeCCCCCCH--HHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence            4678999999986532  23344455554    4678888888654  35677776654

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.82  E-value=0.069  Score=46.64  Aligned_cols=163  Identities=16%  Similarity=0.127  Sum_probs=87.1

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc--------
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ--------   89 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d--------   89 (358)
                      .+++-+.+++.|+||++.+|..++..|+..|.  +|++.|.+.   .+..+.++.....  ++..+. +..|        
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~   87 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMF   87 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHH
Confidence            33334456899999999999999999999997  899999875   2233333433221  222221 1112        


Q ss_pred             --cccccCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHH
Q 018314           90 --LGQALEDSDVVIIPAGVPRKP---GMT---RDDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        90 --~~~al~~aDiVIi~ag~~~~~---g~~---r~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                        ..+.+..-|++|..+|.....   ..+   ..+.+..|+.-...+.+.+.++- .++.+++++.-....         
T Consensus        88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~---------  158 (272)
T d1g0oa_          88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQA---------  158 (272)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTC---------
T ss_pred             HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccccccc---------
Confidence              123456789999998864322   222   22344455444444444444433 345555554332111         


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        +..+..-.++.+.-.-..+-+.+|..++  ++.|++-.+
T Consensus       159 --~~~~~~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I  195 (272)
T d1g0oa_         159 --KAVPKHAVYSGSKGAIETFARCMAIDMA--DKKITVNVV  195 (272)
T ss_dssp             --SSCSSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --ccccchhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEE
Confidence              1011111223321112345677777774  566765544

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.80  E-value=0.038  Score=47.71  Aligned_cols=155  Identities=15%  Similarity=0.167  Sum_probs=87.7

Q ss_pred             e-EEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------c
Q 018314           30 K-VAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------L   90 (358)
Q Consensus        30 K-I~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~   90 (358)
                      + |.|+||++++|..++..|+..|.     ...++++|+++  .+....++....  .++..+. +-+|          .
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHH
Confidence            6 45779999999999999998774     23589999876  344445554432  1222221 1111          1


Q ss_pred             ccccCCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHH
Q 018314           91 GQALEDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        91 ~~al~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                      .+.+..-|++|..||.....   ..+.   ...+..|    .-+.+.+.+.|++.. .+.+|+++.-....         
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~---------  149 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH-SGHIFFITSVAATK---------  149 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS---------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC-CCceEEEechhhcC---------
Confidence            23455789999999875322   1222   2234444    556678888887754 56677766544211         


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        + +|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       150 --~-~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i  185 (240)
T d2bd0a1         150 --A-FRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDV  185 (240)
T ss_dssp             --C-CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             --C-CCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEe
Confidence              1 22222222222112345666677663  566766555

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=95.79  E-value=0.056  Score=47.64  Aligned_cols=156  Identities=12%  Similarity=0.055  Sum_probs=83.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------cccccC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQALE   95 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al~   95 (358)
                      +.+.|+||+|++|.+++..|+..|.  +|++.|+++  ....+.++.... ..++..+. +-.|          ..+...
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~-g~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhc-CCceEEEEecccChHHHHHHhhhhhhhcc
Confidence            4688889999999999999999997  999999986  233344453221 11222221 1111          123346


Q ss_pred             CCCEEEEcCCCCCCCC---CC---HHHHHHHHHHH----HHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCC
Q 018314           96 DSDVVIIPAGVPRKPG---MT---RDDLFNINAGI----VKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTY  165 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~~---r~~~~~~N~~i----~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~  165 (358)
                      ..|++|..||......   .+   ..+.+..|...    ....+..+........+++.+....           ..+ .
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~-----------~~~-~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA-----------ETG-S  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH-----------HHC-C
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchh-----------hhc-c
Confidence            7899999998643221   22   12223333222    3444455554455555554443321           111 2


Q ss_pred             CCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          166 NEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       166 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      +..-.++.+.-.-..+-+.+|..++  ++.|++-.+
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I  204 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVI  204 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEE
Confidence            2211222222222355677787764  666766555

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=95.77  E-value=0.034  Score=41.24  Aligned_cols=73  Identities=18%  Similarity=0.373  Sum_probs=52.4

Q ss_pred             CCCceEEEEcCCCChH-HHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIG-QPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG-~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+.+||-+||- |.+| +++|..|...|+  +|.-.|.... ....+|.+..  ..+.  .+. + .+.++++|+||.+.
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~-~~~~~L~~~G--i~v~--~g~-~-~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADG-VVTQRLAQAG--AKIY--IGH-A-EEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCS-HHHHHHHHTT--CEEE--ESC-C-GGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCC-hhhhHHHHCC--CeEE--ECC-c-cccCCCCCEEEECC
Confidence            46779999997 8888 666999999998  9999998752 2233455433  2333  222 2 45689999999998


Q ss_pred             CCCC
Q 018314          105 GVPR  108 (358)
Q Consensus       105 g~~~  108 (358)
                      ++|.
T Consensus        76 AI~~   79 (96)
T d1p3da1          76 AIKD   79 (96)
T ss_dssp             TSCT
T ss_pred             CcCC
Confidence            8774

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.77  E-value=0.044  Score=49.04  Aligned_cols=155  Identities=14%  Similarity=0.192  Sum_probs=88.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----------cHHHHHHhhcCCCCccEEEE-ecCCcc-----
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----------TPGVAADVGHINTRSEVAGY-MGNDQL-----   90 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----------~~~~~~dl~~~~~~~~v~~~-~~~~d~-----   90 (358)
                      .+.+.|+||++++|..++..|+..|.  .|++.|++.           ++....++.....  ..... ...++.     
T Consensus         7 gKvalITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           7 GRVVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGG--KAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTC--EEEEECCCGGGHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhccc--ccccccchHHHHHHHHH
Confidence            45678889999999999999999997  899998753           1122233332221  11111 111111     


Q ss_pred             --ccccCCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           91 --GQALEDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        91 --~~al~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                        .+.+..-|++|..||.....   ..+..   ..+.-|    ....+...+.|++.. .+.||+++....         
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~isS~~~---------  152 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTASASG---------  152 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH---------
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeCChhh---------
Confidence              13455799999999975422   22322   233444    456677888887765 567777764321         


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        ..| .+..-.++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       153 --~~~-~~~~~~Y~asKaal~~lt~~la~E~--~~~gIrVN~I  190 (302)
T d1gz6a_         153 --IYG-NFGQANYSAAKLGLLGLANTLVIEG--RKNNIHCNTI  190 (302)
T ss_dssp             --HHC-CTTCHHHHHHHHHHHHHHHHHHHHT--GGGTEEEEEE
T ss_pred             --cCC-CCCcHHHHHHHHHHHHHHHHHHHHH--hccCCceeee
Confidence              122 3322233333222345667777776  4566766554

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.71  E-value=0.0066  Score=53.25  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=69.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC--CccEEEEec----CCccccccCCCCE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT--RSEVAGYMG----NDQLGQALEDSDV   99 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~--~~~v~~~~~----~~d~~~al~~aDi   99 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|++.|+++  .+..+.++.....  ..++.-...    .....+.+..-|+
T Consensus         6 gK~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           6 GKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            34778889999999999999999997  899999876  2333444432210  011100000    0111233467899


Q ss_pred             EEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          100 VIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       100 VIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +|..||.....   ..+..   ..+..|    .-..+...+.|++.  .+.||+++...
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~~  140 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASVS  140 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCGG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccchh
Confidence            99999974321   22322   234444    44567777777643  47788776544

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.70  E-value=0.074  Score=46.03  Aligned_cols=153  Identities=18%  Similarity=0.238  Sum_probs=89.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALED   96 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~~   96 (358)
                      .+.|+||++++|..++..|+..+.  .|++.|+++  .+..+.++.....  ++..+. +-+|.          .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            566779999999999999999887  899999876  3444455554332  233322 11221          133468


Q ss_pred             CCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      -|++|..||.....   ..+..   ..+..|    ....+...+.+.+.. .+.||+++....           ..+ .|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~-----------~~~-~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVG-----------LTG-NV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-----------HHC-CT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHh-----------cCC-CC
Confidence            99999999864322   22222   233344    445577777777664 567777764331           122 33


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V  187 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAI  187 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEE
Confidence            332333332222356677777763  566766555

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=95.69  E-value=0.051  Score=47.37  Aligned_cols=155  Identities=12%  Similarity=0.049  Sum_probs=86.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc---c-------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++  .+....++....  .+...+. +-+|   .       .+.+
T Consensus         8 GK~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           8 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999997  899999876  333344444322  1222221 1111   1       1223


Q ss_pred             C-CCCEEEEcCCCCCCC---CCCHH---HHHHHHH----HHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 E-DSDVVIIPAGVPRKP---GMTRD---DLFNINA----GIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~-~aDiVIi~ag~~~~~---g~~r~---~~~~~N~----~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      . .-|++|..||.....   ..+..   ..+..|+    .+.+...+.+.+. ..+.||+++.-....           +
T Consensus        84 ~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~~-----------~  151 (259)
T d2ae2a_          84 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGAL-----------A  151 (259)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGTS-----------C
T ss_pred             CCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-ccccccccccccccc-----------c
Confidence            3 479999999864422   23322   3444554    3445666666554 456677665433211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       152 -~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  186 (259)
T d2ae2a_         152 -VPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGV  186 (259)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEE
T ss_pred             -cccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEe
Confidence             22111222221112345677777763  666766555

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.66  E-value=0.072  Score=46.04  Aligned_cols=152  Identities=15%  Similarity=0.125  Sum_probs=86.8

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++  .+....++.+.     ...+. +-+|          ..+.+
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           6 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADA-----ARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGG-----EEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCc-----ceEEEeecCCHHHHHHHHHHHHHHh
Confidence            34788889999999999999999997  899999976  33444444332     11111 1111          11234


Q ss_pred             CCCCEEEEcCCCCCC-C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRK-P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.... +  ..+..   +.+..|    ..+.+...+.+.+.. .+.||+++......           + 
T Consensus        79 g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~~-----------~-  145 (244)
T d1nffa_          79 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISSIEGLA-----------G-  145 (244)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------C-
T ss_pred             CCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC-cceEEecccccccc-----------c-
Confidence            578999999986432 1  22322   234444    444566666666654 57777776654321           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .+..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       146 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  180 (244)
T d1nffa_         146 TVACHGYTATKFAVRGLTKSTALELG--PSGIRVNSI  180 (244)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHHhc--ccCEEEEEE
Confidence            11111222221122345677777763  566765544

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.65  E-value=0.046  Score=47.69  Aligned_cols=155  Identities=13%  Similarity=0.096  Sum_probs=84.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------cccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al   94 (358)
                      .+.+.|+||++.+|..++..|+..+.  .|++.|+++  .+..+.++.....  ++..+. +-+|.          .+.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            45888999999999999999999997  899999876  3333444443321  233322 11111          1222


Q ss_pred             C-CCCEEEEcCCCCCC-C--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 E-DSDVVIIPAGVPRK-P--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~-~aDiVIi~ag~~~~-~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      . .-|++|..||.... +  ..+..+   .+..|    ..+.+.+.+.|++.. .+.||+++.-....           +
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------~  151 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGVV-----------S  151 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC------------------
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-cccccccccccccc-----------c
Confidence            2 37999999986432 1  233322   33344    445577777777654 45566665433211           1


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .+..-.++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       152 -~~~~~~Y~asKaal~~lt~~lA~e~--~~~gIrVN~V  186 (259)
T d1xq1a_         152 -ASVGSIYSATKGALNQLARNLACEW--ASDGIRANAV  186 (259)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHH--GGGTCEEEEE
T ss_pred             -ccccccccccccchhhhhHHHHHHh--cccCeEEEEe
Confidence             2222223333222244567777776  3566766555

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.64  E-value=0.046  Score=47.58  Aligned_cols=155  Identities=13%  Similarity=0.127  Sum_probs=87.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc---c-------cccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d---~-------~~al   94 (358)
                      +.+.|+||++.+|..++..|+..|.  +|++.|+++   .+....++.... ..++..+. +-+|   .       .+.+
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            4677889999999999999999997  899999875   222223332211 11222221 1111   1       1234


Q ss_pred             CCCCEEEEcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           95 EDSDVVIIPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      ..-|++|..||.....   ..+..   ..+..|    ....+...+.+.+.. .+.||+++......           + 
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~~-----------~-  148 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGLV-----------A-  148 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGTS-----------C-
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeeccccccee-----------c-
Confidence            5789999999975322   12322   334444    556677788877764 56677776544211           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       149 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I  183 (260)
T d1x1ta1         149 SANKSAYVAAKHGVVGFTKVTALETA--GQGITANAI  183 (260)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             cCCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEE
Confidence            12111222222122346677787774  667766555

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.63  E-value=0.047  Score=47.05  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC---Cc-------ccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN---DQ-------LGQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~---~d-------~~~al   94 (358)
                      .+++.|+||++++|..+|..|+..+.  +|++.|+++  .+....++..     ++..+. +-   ++       ..+.+
T Consensus         5 gK~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dls~~~~i~~~~~~i~~~~   77 (241)
T d2a4ka1           5 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEAVAALEA-----EAIAVVADVSDPKAVEAVFAEALEEF   77 (241)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCCS-----SEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45788999999999999999999997  999999876  2222233321     222221 11   11       12334


Q ss_pred             CCCCEEEEcCCCCC-CC--CCCH---HHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeCCCCcchHHHHHHHHHhCCCCC
Q 018314           95 EDSDVVIIPAGVPR-KP--GMTR---DDLFNINAGIVKDLCSAIAKYCP-NAIVNMISNPVNSTVPIAAEVFKKAGTYNE  167 (358)
Q Consensus        95 ~~aDiVIi~ag~~~-~~--g~~r---~~~~~~N~~i~~~i~~~i~~~~p-~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~  167 (358)
                      ..-|++|..||.+. .+  ..+.   ...+.-|+.-...+.+...++.. ...+++.+.......+-             
T Consensus        78 g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~~-------------  144 (241)
T d2a4ka1          78 GRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFG-------------  144 (241)
T ss_dssp             SCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHHH-------------
T ss_pred             CCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccccccccccC-------------
Confidence            67899999887643 22  2232   34456676666666666666653 33444444443222111             


Q ss_pred             CceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          168 KKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       168 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .-.++.+.-.-..|-+.+|+.++  ++.|++-.+
T Consensus       145 ~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I  176 (241)
T d2a4ka1         145 LAHYAAGKLGVVGLARTLALELA--RKGVRVNVL  176 (241)
T ss_dssp             HHHHHHCSSHHHHHHHHHHHHHT--TTTCEEEEE
T ss_pred             ccccchhhHHHHHHHHHHHHHHh--HhCCEEeee
Confidence            01123333334567888898884  666766555

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.63  E-value=0.027  Score=49.06  Aligned_cols=78  Identities=13%  Similarity=0.082  Sum_probs=51.1

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecC---------CccccccC
Q 018314           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~---------~d~~~al~   95 (358)
                      .+++.|+||+|  ++|.++|..|+..|.  +|++.|+++ ....+.++........+.....+         .+..+.+.
T Consensus         5 gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           5 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            45899999877  699999999999998  999999987 33344444432211122211111         11234457


Q ss_pred             CCCEEEEcCCCC
Q 018314           96 DSDVVIIPAGVP  107 (358)
Q Consensus        96 ~aDiVIi~ag~~  107 (358)
                      ..|++|..+|..
T Consensus        83 ~id~lV~nag~~   94 (274)
T d2pd4a1          83 SLDFIVHSVAFA   94 (274)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCeEEeecccc
Confidence            899999998864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.61  E-value=0.035  Score=42.79  Aligned_cols=35  Identities=23%  Similarity=0.451  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..+|+|||| |.+|.-+|..|...+.  ++.|++..+
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            3469999998 9999999999999887  999999865

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.58  E-value=0.044  Score=48.09  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=69.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEe-cCCc---c-------ccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQ---L-------GQA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d---~-------~~a   93 (358)
                      .+.+.|+||++.+|..++..|+..|.  +|++.|+++  .+....++..... ..++..+. +-+|   .       .+.
T Consensus         5 gK~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~   82 (272)
T d1xkqa_           5 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   82 (272)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            34788889999999999999999997  899999876  3444455554432 22344332 1112   1       123


Q ss_pred             cCCCCEEEEcCCCCCCC-------CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEee
Q 018314           94 LEDSDVVIIPAGVPRKP-------GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~-------g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                      +..-|++|..||.....       +++.   ...+..|    ....+.+.+.+++. +.++|++.|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          83 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             hCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            45789999999874321       1222   2233444    34567777777654 345544443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.55  E-value=0.0073  Score=51.25  Aligned_cols=35  Identities=26%  Similarity=0.402  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..+||+|||| |-.|.+.|+.|+..++  +|.|+|.+.
T Consensus         5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           5 SQKRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CCCcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4459999998 9999999999999988  899999753

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.54  E-value=0.0035  Score=54.57  Aligned_cols=154  Identities=18%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH-----HHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP-----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~-----~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.+++.|+||++.+|..++..|+..+.  +|++.|+++..     ....|+.+..   .++..  -....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHH--HHHHHHhcCCceEEE
Confidence            445888999999999999999999997  89999987621     1111222111   01000  011234456789999


Q ss_pred             EcCCCCCCC---CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceE
Q 018314          102 IPAGVPRKP---GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (358)
Q Consensus       102 i~ag~~~~~---g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kvi  171 (358)
                      ..||.....   ..+..   ..+..|    ....+.+.+.+.+.. .+.||+++.-.....            .+..-.+
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~~------------~~~~~~Y  145 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLWG------------IGNQANY  145 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC-----------------CCHHH
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhccC------------CcccHHH
Confidence            999874321   23332   234444    344566677776654 556777765443211            1111122


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      +.+.-.-..|-+.+|..+  .++.|++-.+-
T Consensus       146 ~asKaal~~lt~~lA~e~--~~~gIrVN~I~  174 (237)
T d1uzma1         146 AASKAGVIGMARSIAREL--SKANVTANVVA  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHH--GGGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhh--hcCCceeeeee
Confidence            222211234566777776  35667665553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0046  Score=53.96  Aligned_cols=153  Identities=18%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cC------CccccccCCCCEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GN------DQLGQALEDSDVV  100 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~------~d~~~al~~aDiV  100 (358)
                      .+.+.|+||++.+|..++..|+..+.  +|++.|+++.  ...++.+..   .++... +.      +...+.+..-|++
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~--~l~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~id~l   78 (245)
T d2ag5a1           6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINES--KLQELEKYP---GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (245)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH--HHGGGGGST---TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHH--HHHHHHhcc---CCceeeeeccccccccccccccccceeE
Confidence            34677889999999999999999997  9999998752  112222221   111111 00      1122345689999


Q ss_pred             EEcCCCCCCC---CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCce
Q 018314          101 IIPAGVPRKP---GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKL  170 (358)
Q Consensus       101 Ii~ag~~~~~---g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kv  170 (358)
                      |..+|.+...   ..+..+   .+.-|    ....+.+.+.+.+.. .+.|++++.......          + ++..-.
T Consensus        79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~~----------~-~~~~~~  146 (245)
T d2ag5a1          79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSVASSVK----------G-VVNRCV  146 (245)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTTB----------C-CTTBHH
T ss_pred             EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC-CceeeeeechhhccC----------C-ccchhH
Confidence            9999875432   233322   22333    455567777666554 566777765543211          1 222222


Q ss_pred             EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          171 FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       171 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ++.+.-.-..+-+.+|+.++  ++.|++-.+
T Consensus       147 Y~~sKaal~~l~r~lA~e~~--~~gIrvN~I  175 (245)
T d2ag5a1         147 YSTTKAAVIGLTKSVAADFI--QQGIRCNCV  175 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            23322122456677887764  667766555

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.50  E-value=0.067  Score=45.96  Aligned_cols=159  Identities=15%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecC---------CccccccC
Q 018314           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGN---------DQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~---------~d~~~al~   95 (358)
                      .++|.|+||+|  ++|.++|..|+..|.  +|++.|.++ ....+.++..............+         .+..+...
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            45899999877  688999999999997  899999986 33333333322111111111000         11123345


Q ss_pred             CCCEEEEcCCCCCCCC---C-----CH---HHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           96 DSDVVIIPAGVPRKPG---M-----TR---DDLFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g---~-----~r---~~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..|++|..++......   .     ..   ...+.-|......+.+.+..+- +...++++|.....           .+
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------~~  151 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------RA  151 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------SB
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------cC
Confidence            6688888876532111   1     11   1223344455555555555544 34455655554311           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                       .|..-.++.+.-.-..+-+.+|+.++  ++.|++-.+-
T Consensus       152 -~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~  187 (258)
T d1qsga_         152 -IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAIS  187 (258)
T ss_dssp             -CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeeccc
Confidence             23223334432223457788888885  6778776663

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.49  E-value=0.081  Score=47.05  Aligned_cols=156  Identities=13%  Similarity=0.080  Sum_probs=88.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCC---CCccEEEEe-cCCcc----------c
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHIN---TRSEVAGYM-GNDQL----------G   91 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~---~~~~v~~~~-~~~d~----------~   91 (358)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++  .+..+.++....   ...++..+. +-+|.          .
T Consensus        12 gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~   89 (297)
T d1yxma1          12 GQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   89 (297)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence            45788999999999999999999997  899999976  344445554321   122344332 11221          1


Q ss_pred             cccCCCCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHH
Q 018314           92 QALEDSDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKK  161 (358)
Q Consensus        92 ~al~~aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~  161 (358)
                      +.+..-|++|..||.....   ..+.   ...+..|    .-+.+...+.+.+... +.+|+++.....           
T Consensus        90 ~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~-----------  157 (297)
T d1yxma1          90 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKA-----------  157 (297)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTT-----------
T ss_pred             HHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccccccc-----------
Confidence            2345789999999864322   1222   2334455    4445666666665543 445555443211           


Q ss_pred             hCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          162 AGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       162 sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       + +|..-.++.+.-.-..|-+.+|..+  .++.|++-.+
T Consensus       158 -~-~~~~~~Y~asKaal~~ltk~lA~el--~~~gIrVN~I  193 (297)
T d1yxma1         158 -G-FPLAVHSGAARAGVYNLTKSLALEW--ACSGIRINCV  193 (297)
T ss_dssp             -C-CTTCHHHHHHHHHHHHHHHHHHHHT--GGGTEEEEEE
T ss_pred             -c-ccccccchhHHHHHHHHHHHHHHHh--cccCceEEEe
Confidence             1 2221122222212235667788776  4666766555

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=95.46  E-value=0.0068  Score=49.76  Aligned_cols=74  Identities=23%  Similarity=0.235  Sum_probs=44.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .++||+|+||+|.||+.++..+...+-..=+..+|.........|+....  ....+...   .|+.+.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~---~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQ---SSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEE---SCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceee---ccHHHHhcccceEEEe
Confidence            46899999999999999999888875321223455443222222333222  12233332   4566788999987654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.024  Score=46.34  Aligned_cols=69  Identities=16%  Similarity=0.240  Sum_probs=46.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +.++|.|+|| |+.+.++++.|...+.  +|.+++++..  +..+..+.+..   .++... ..  .....++|+||.+-
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~~---~~~~~~-~~--~~~~~~~dliIN~T   87 (170)
T d1nyta1          17 PGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHTG---SIQALS-MD--ELEGHEFDLIINAT   87 (170)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGGS---SEEECC-SG--GGTTCCCSEEEECC
T ss_pred             CCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhcc---cccccc-cc--cccccccceeeccc
Confidence            4569999998 9999999999999886  7999997652  22233333222   344322 11  22457899999864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.40  E-value=0.0051  Score=53.84  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=33.1

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ...+++||+|||| |-.|.+.|+.|++.|+  +|+|+|..+
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3356779999998 9999999999999997  999999754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.40  E-value=0.033  Score=48.49  Aligned_cols=154  Identities=18%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             eE-EEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccC
Q 018314           30 KV-AVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALE   95 (358)
Q Consensus        30 KI-~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~   95 (358)
                      || .|+||++++|..++..|+..+.  .|++.|+++  .+..+.++.+...  ++..+. +-+|.          .+.+.
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 5679999999999999999997  899999876  3444455544321  233221 11111          23345


Q ss_pred             CCCEEEEcCCCCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhh-----CCCeEEEEeeCCCCcchHHHHHHHHHhCC
Q 018314           96 DSDVVIIPAGVPRKP---GMTR---DDLFNINAGIVKDLCSAIAKY-----CPNAIVNMISNPVNSTVPIAAEVFKKAGT  164 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~---g~~r---~~~~~~N~~i~~~i~~~i~~~-----~p~a~iiv~tNP~d~~t~~~~~~~~~sg~  164 (358)
                      .-|++|..||.....   ..+.   .+.+..|+.-.-.+++.+-++     ...+.||+++.-....           + 
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~-----------~-  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQ-----------G-  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTS-----------C-
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccc-----------c-
Confidence            789999999975422   2232   234556655444444443322     2245566554332111           1 


Q ss_pred             CCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          165 YNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       165 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I  181 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAV  181 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEE
Confidence            12111222221112346677888764  666766555

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.37  E-value=0.019  Score=47.87  Aligned_cols=105  Identities=25%  Similarity=0.333  Sum_probs=67.3

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +...+...++|+|+|. |.+|+.++..+..-+  .+|..||.........+..       ++.    .++++.++.||+|
T Consensus        37 ~~~~~l~~k~vgiiG~-G~IG~~va~~~~~fg--~~v~~~d~~~~~~~~~~~~-------~~~----~~l~ell~~sDiv  102 (184)
T d1ygya1          37 FSGTEIFGKTVGVVGL-GRIGQLVAQRIAAFG--AYVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFI  102 (184)
T ss_dssp             CCBCCCTTCEEEEECC-SHHHHHHHHHHHTTT--CEEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeccc-cchhHHHHHHhhhcc--ceEEeecCCCChhHHhhcC-------cee----ccHHHHHhhCCEE
Confidence            4555667789999997 999999998887544  4999999765433333221       221    2356889999999


Q ss_pred             EEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchH
Q 018314          101 IIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVP  153 (358)
Q Consensus       101 Ii~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~  153 (358)
                      ++..- .+...++       -|.       +.+....|++++|+++--.=+-..
T Consensus       103 ~~~~Plt~~T~~l-------in~-------~~l~~mk~~a~lIN~sRG~iVde~  142 (184)
T d1ygya1         103 SVHLPKTPETAGL-------IDK-------EALAKTKPGVIIVNAARGGLVDEA  142 (184)
T ss_dssp             EECCCCSTTTTTC-------BCH-------HHHTTSCTTEEEEECSCTTSBCHH
T ss_pred             EEcCCCCchhhhh-------hhH-------HHHhhhCCCceEEEecchhhhhhH
Confidence            99752 2222222       111       234445689999988665444333

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.36  E-value=0.048  Score=41.98  Aligned_cols=35  Identities=26%  Similarity=0.326  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..+|+|||| |.+|.-+|..|...+.  ++.+++..+
T Consensus        29 ~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            4569999998 9999999999999987  899998864

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.32  E-value=0.02  Score=43.63  Aligned_cols=40  Identities=15%  Similarity=0.261  Sum_probs=33.5

Q ss_pred             cCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           22 SSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        22 ~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+.+..|.|++|+|| |.+|.-+|..|...+.  ++.|++..+
T Consensus        15 l~~~~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          15 LAPKALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             TCCSSCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             hCcccCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            344455689999998 9999999999998886  999999865

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.28  E-value=0.0048  Score=53.60  Aligned_cols=90  Identities=21%  Similarity=0.234  Sum_probs=59.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEEcCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVIIPAGV  106 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi~ag~  106 (358)
                      |||.|+||+|++|+.++..|...++  +|+-.|+.+.     |+.+.            .++++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~~-----D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQDL-----DITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTTC-----CTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechhc-----cCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            8999999999999999999998887  8999987641     22110            11223343  56899998865


Q ss_pred             CCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCC
Q 018314          107 PRKP--GMTRDDLFNINAGIVKDLCSAIAKYCP  137 (358)
Q Consensus       107 ~~~~--g~~r~~~~~~N~~i~~~i~~~i~~~~p  137 (358)
                      ....  ..........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            3211  122344556666666666666665543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.28  E-value=0.13  Score=44.25  Aligned_cols=152  Identities=20%  Similarity=0.236  Sum_probs=87.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCcc----------ccccCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQL----------GQALED   96 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d~----------~~al~~   96 (358)
                      |.|+||++++|..++..|+..|.  .|++.|.+.   .+....++....  .++..+. +-+|.          .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            56679999999999999999997  888888765   222333333222  1222221 11121          223457


Q ss_pred             CCEEEEcCCCCCCC---CCCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCC
Q 018314           97 SDVVIIPAGVPRKP---GMTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYN  166 (358)
Q Consensus        97 aDiVIi~ag~~~~~---g~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~  166 (358)
                      -|++|..||.....   ..+.   ...+..|    .-..+...+.|.+.. .+.||+++.-..           ..+ .+
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~-----------~~~-~~  146 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR-KGRIINIASVVG-----------LIG-NI  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-----------HHC-CT
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC-CcEEEEEcChhh-----------cCC-CC
Confidence            89999999864322   2232   2233344    556677777777654 677777755331           122 33


Q ss_pred             CCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          167 EKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       167 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      ..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       147 ~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I  179 (244)
T d1edoa_         147 GQANYAAAKAGVIGFSKTAAREGA--SRNINVNVV  179 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEE
Confidence            333334432223456777888774  666766555

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.27  E-value=0.0043  Score=53.73  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=31.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++|.|+||+|.+|..++..|+..+.  +|+++|.++
T Consensus         2 gK~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~   36 (236)
T d1dhra_           2 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVE   36 (236)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            46899999999999999999999987  899999865

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.22  E-value=0.0042  Score=53.60  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=31.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .||.|+||+|.+|..++..|++.+.  +|++.|+++
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~   36 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSA   36 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            4899999999999999999999987  899999975

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=95.20  E-value=0.13  Score=44.93  Aligned_cols=152  Identities=20%  Similarity=0.189  Sum_probs=84.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------cccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQA   93 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~a   93 (358)
                      +.+.+.|+||++.+|..++..|+..+.  +|++.|+++  ......++..     ++..+. +-+|          ..+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~~~   76 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAERLAELETDHGD-----NVLGIVGDVRSLEDQKQAASRCVAR   76 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCC-----CeeEEecccccHHHHHHHHHHHHHH
Confidence            456899999999999999999999997  999999875  2233333332     122211 1111          1233


Q ss_pred             cCCCCEEEEcCCCCCCC-------CCCH----HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHH
Q 018314           94 LEDSDVVIIPAGVPRKP-------GMTR----DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEV  158 (358)
Q Consensus        94 l~~aDiVIi~ag~~~~~-------g~~r----~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~  158 (358)
                      +..-|++|..||.....       .+..    ...+.-|    ....+.+.+.+++..  +-+|+++......       
T Consensus        77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--g~iI~i~S~~~~~-------  147 (276)
T d1bdba_          77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR--GNVIFTISNAGFY-------  147 (276)
T ss_dssp             HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCGGGTS-------
T ss_pred             hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC--CCceeeeechhcc-------
Confidence            56789999999863211       1111    2233333    455677788887653  4444444322111       


Q ss_pred             HHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          159 FKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       159 ~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                          + .|..-.++.+.-.-..|-+.+|..++  +. |++-.+-
T Consensus       148 ----~-~~~~~~Y~asKaal~~ltr~lA~ela--~~-IrVN~I~  183 (276)
T d1bdba_         148 ----P-NGGGPLYTAAKHAIVGLVRELAFELA--PY-VRVNGVG  183 (276)
T ss_dssp             ----T-TSSCHHHHHHHHHHHHHHHHHHHHHT--TT-CEEEEEE
T ss_pred             ----C-CCCCchHHHHHHHHHHHHHHHHHHhh--cc-eEEcccC
Confidence                1 12111222221112356677888875  44 7765553

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.15  E-value=0.0064  Score=55.39  Aligned_cols=90  Identities=13%  Similarity=0.096  Sum_probs=60.3

Q ss_pred             hhhhhhhcccccccccccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEE
Q 018314            5 VLRSVKTLAKPAGARGYSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVA   82 (358)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~   82 (358)
                      .|-.++|-|-.+-+-+++..+ ....++|||+ |..+.+-+..+.....+.+|.+||+++  .+..+.++.+..  ..+.
T Consensus       103 ~lT~~RTaA~sala~~~la~~-~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~--~~~~  178 (320)
T d1omoa_         103 YTTSLRTGAAGGIAAKYLARK-NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRG--ISAS  178 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCT-TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTT--CCEE
T ss_pred             ccccccchhHHHHHHHHhccC-CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcC--Cccc
Confidence            345566666666666666655 4568999997 988877776665544478999999876  344455555433  2333


Q ss_pred             EEecCCccccccCCCCEEEEc
Q 018314           83 GYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        83 ~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .     +..+++.+||+|+.+
T Consensus       179 ~-----~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         179 V-----QPAEEASRCDVLVTT  194 (320)
T ss_dssp             E-----CCHHHHTSSSEEEEC
T ss_pred             c-----chhhhhccccEEEEe
Confidence            2     125789999999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.12  E-value=0.2  Score=40.00  Aligned_cols=99  Identities=16%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEec-CCccc---ccc-----C
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMG-NDQLG---QAL-----E   95 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~-~~d~~---~al-----~   95 (358)
                      ++..+|.|+|+ |.||...+..+...+.  +++.+|.++ ....+.++...    ....... ..+..   +.+     .
T Consensus        25 ~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga~----~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          25 QLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGAD----VTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTCS----EEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCCc----EEEeccccccccchhhhhhhccccc
Confidence            34568999997 9999999988888885  899999876 33344444311    1111110 11111   111     4


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      ++|+||.++|.+.                  .+-..++-..|.+.+++++.|.+
T Consensus        98 g~D~vid~~g~~~------------------~~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          98 LPNVTIDCSGNEK------------------CITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             CCSEEEECSCCHH------------------HHHHHHHHSCTTCEEEECSCCSS
T ss_pred             CCceeeecCCChH------------------HHHHHHHHHhcCCceEEEecCCC
Confidence            6899999886421                  12222344468899999987765

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.01  Score=49.24  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-H----HHHHHhhcCCCCccEEEEec--CCccccccCCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-P----GVAADVGHINTRSEVAGYMG--NDQLGQALEDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~----~~~~dl~~~~~~~~v~~~~~--~~d~~~al~~aDi   99 (358)
                      +.++|.|+|+ |++|.++++.|...+ ..+|++++++.. .    ..+.++.... ...+....-  ..++.+.+.++|+
T Consensus        17 ~~k~vlIlGa-GGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          17 KGKTMVLLGA-GGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAFAQRVNENT-DCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHHHHHHHhhc-CcceEeeecccccchhhhhcccce
Confidence            4469999998 999999999998887 469999998752 2    2222333222 122332211  1233456789999


Q ss_pred             EEEcC
Q 018314          100 VIIPA  104 (358)
Q Consensus       100 VIi~a  104 (358)
                      ||.+.
T Consensus        94 iIN~T   98 (182)
T d1vi2a1          94 LTNGT   98 (182)
T ss_dssp             EEECS
T ss_pred             ecccc
Confidence            99975

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.11  E-value=0.011  Score=50.59  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +..||+|||| |-.|.++|..|+..++  +++++|..
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~   36 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERS   36 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCC
Confidence            5679999998 9999999999999998  99999974

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.059  Score=43.50  Aligned_cols=133  Identities=17%  Similarity=0.280  Sum_probs=72.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++..+|.|+|+ |.+|...+..+...+.  +++..|.++ ....+.++.-   . .+-.+..........++.|+||.+.
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lGa---d-~~i~~~~~~~~~~~~~~~D~vid~~  101 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALGA---D-EVVNSRNADEMAAHLKSFDFILNTV  101 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHTC---S-EEEETTCHHHHHTTTTCEEEEEECC
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccCC---c-EEEECchhhHHHHhcCCCceeeeee
Confidence            45679999997 9999998888887775  666788765 2334444431   1 1111111111223457899999998


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec---cccHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT---TLDVVRA  181 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t---~lds~R~  181 (358)
                      |.+.    .              +-..++-..|.+.+++++-|.+....+..  ....  +...+++|..   .-|..++
T Consensus       102 g~~~----~--------------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~--~~l~--~k~~~i~Gs~~~~~~d~~e~  159 (168)
T d1uufa2         102 AAPH----N--------------LDDFTTLLKRDGTMTLVGAPATPHKSPEV--FNLI--MKRRAIAGSMIGGIPETQEM  159 (168)
T ss_dssp             SSCC----C--------------HHHHHTTEEEEEEEEECCCC-------CH--HHHH--TTTCEEEECCSCCHHHHHHH
T ss_pred             ecch----h--------------HHHHHHHHhcCCEEEEeccCCCCcccccH--HHHH--HCCcEEEEEeecCHHHHHHH
Confidence            7542    0              11223345588888888776543221110  1111  3356888883   2344444


Q ss_pred             HHHHHH
Q 018314          182 KTFYAG  187 (358)
Q Consensus       182 ~~~la~  187 (358)
                      ..++++
T Consensus       160 l~l~a~  165 (168)
T d1uufa2         160 LDFCAE  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            455544

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=95.02  E-value=0.0032  Score=50.51  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=34.8

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      |++||+ |.||++++..|.....  ...+|+++.  ..+.+|.+.... .  .    .+..++++.+|+||++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~--~~~~~l~~~~~~-~--~----~~~~~~~~~~DiVil~v   63 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSI--DRARNLAEVYGG-K--A----ATLEKHPELNGVVFVIV   63 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSH--HHHHHHHHHTCC-C--C----CSSCCCCC---CEEECS
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCCh--hhhcchhhcccc-c--c----cchhhhhccCcEEEEec
Confidence            689997 9999999987755443  234677654  333334332211 1  1    12357889999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.048  Score=45.32  Aligned_cols=97  Identities=24%  Similarity=0.330  Sum_probs=62.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +-..++|+|+|. |.+|..++..+..-+.  ++..||.....         .......    ..++++.++.||+|++..
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~---------~~~~~~~----~~~l~ell~~sDii~i~~  104 (188)
T d1sc6a1          41 EARGKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKL---------PLGNATQ----VQHLSDLLNMSDVVSLHV  104 (188)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCC---------CCTTCEE----CSCHHHHHHHCSEEEECC
T ss_pred             cccceEEEEeec-ccchhhhhhhcccccc--eEeeccccccc---------hhhhhhh----hhhHHHHHhhccceeecc
Confidence            345679999997 9999999998876665  99999975411         0001111    235678899999999986


Q ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314          105 GV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus       105 g~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      .. +...+.       -|.       +.++...+++++|+++-.-=+-
T Consensus       105 plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1         105 PENPSTKNM-------MGA-------KEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CSSTTTTTC-------BCH-------HHHHHSCTTEEEEECSCSSSBC
T ss_pred             cCCcchhhh-------ccH-------HHHhhCCCCCEEEEcCcHHhhh
Confidence            32 222232       111       2344556889999886654333

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.93  E-value=0.032  Score=45.71  Aligned_cols=70  Identities=21%  Similarity=0.286  Sum_probs=48.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .+.++|.|+|| |+++.++++.|...+  .+|++++++.  ++..+.++....   .+....  .+ ...+.++|+||.+
T Consensus        16 ~~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~~---~~~~~~--~~-~~~~~~~diiIN~   86 (171)
T d1p77a1          16 RPNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPYG---NIQAVS--MD-SIPLQTYDLVINA   86 (171)
T ss_dssp             CTTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGGS---CEEEEE--GG-GCCCSCCSEEEEC
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhcc---ccchhh--hc-cccccccceeeec
Confidence            35568999998 999999999988755  4999999876  334444454322   333332  11 2357899999998


Q ss_pred             C
Q 018314          104 A  104 (358)
Q Consensus       104 a  104 (358)
                      .
T Consensus        87 t   87 (171)
T d1p77a1          87 T   87 (171)
T ss_dssp             C
T ss_pred             c
Confidence            5

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.89  E-value=0.15  Score=40.29  Aligned_cols=100  Identities=8%  Similarity=0.003  Sum_probs=60.9

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVI  101 (358)
                      .-+|.|+|. |.+|..++..|...+.  +++++|.++.  .....++....  ..+-. .+.+|.    ...+.+||.||
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~--~~vi~-Gd~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN--ADVIP-GDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT--CEEEE-SCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC--cEEEE-ccCcchHHHHHhccccCCEEE
Confidence            347999998 9999999999998886  8999998762  23333333211  11111 111221    23578899999


Q ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe-eCCC
Q 018314          102 IPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI-SNPV  148 (358)
Q Consensus       102 i~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~-tNP~  148 (358)
                      ++.+..           ..|+.+    +..+++.+|+..++.- .+|-
T Consensus        77 ~~~~~d-----------~~n~~~----~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          77 ALSDND-----------ADNAFV----VLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             ECSSCH-----------HHHHHH----HHHHHHHTSSSCEEEECSSGG
T ss_pred             EccccH-----------HHHHHH----HHHHHHhCCCCceEEEEcCHH
Confidence            985310           345433    3456677888755544 4443

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.87  E-value=0.035  Score=45.25  Aligned_cols=65  Identities=20%  Similarity=0.397  Sum_probs=44.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      +++||+|+|+ |.+|+.++..+...+-+.-+.++|.+...         ........   ..+..+.+.+.|+|+++.
T Consensus         2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~---~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFD---VADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEE---GGGGGGTTTTCSEEEECS
T ss_pred             CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------cccccccc---chhhhhhccccceEEEeC
Confidence            4579999997 99999988888876644444567765411         11123332   245567788999999975

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.01  Score=56.13  Aligned_cols=51  Identities=25%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             cccccccccccCCCC--CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           12 LAKPAGARGYSSESV--PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        12 ~~~~~~~~~~~~~~~--~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++.|.|.-+.-..+.  +..||.|||+ |++|+.++..|++.|+ ++|.|+|-+.
T Consensus        19 ~~~~~~~~~~e~~~~~l~~~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          19 FTHPDFEPSTESLQFLLDTCKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             TCCTTCCCCSSHHHHHHHHCCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CcCcccccChHHHHHHHhcCeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            455555544333321  3569999998 9999999999999995 5899999864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=94.85  E-value=0.038  Score=45.99  Aligned_cols=97  Identities=16%  Similarity=0.192  Sum_probs=62.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      +-..++|+|+|. |.+|..++..+..-+.  +|..||... ......+..       +..   ..++++.+++||+|++.
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~~---~~~l~~~l~~sD~v~~~  107 (188)
T d2naca1          41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLN  107 (188)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEEC
T ss_pred             eccccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------ccc---cCCHHHHHHhccchhhc
Confidence            446679999998 9999999998876565  899999865 222222221       221   24567889999999997


Q ss_pred             CCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          104 AGV-PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       104 ag~-~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .-. +...++       -|.       +.++...+++++|+++--.
T Consensus       108 ~plt~~T~~l-------i~~-------~~l~~mk~ga~lIN~aRG~  139 (188)
T d2naca1         108 CPLHPETEHM-------IND-------ETLKLFKRGAYIVNTARGK  139 (188)
T ss_dssp             SCCCTTTTTC-------BSH-------HHHTTSCTTEEEEECSCGG
T ss_pred             ccccccchhh-------hHH-------HHHHhCCCCCEEEecCchh
Confidence            522 222222       111       2334455788888876554

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.78  E-value=0.1  Score=44.98  Aligned_cols=152  Identities=12%  Similarity=0.062  Sum_probs=84.4

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcc-------ccccCCCCEEEE
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL-------GQALEDSDVVII  102 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-------~~al~~aDiVIi  102 (358)
                      ..|+||++.+|..+|..|+..+.  .|++.|++. ...+...+.......++..   ..+.       .+.+..-|++|.
T Consensus         3 AlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~~---~~~~~~~~~~~~~~~G~iDiLVn   77 (252)
T d1zmta1           3 AIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPMS---EQEPAELIEAVTSAYGQVDVLVS   77 (252)
T ss_dssp             EEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEECC---CCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccCC---HHHHHHHHHHHHHHcCCCCEEEE
Confidence            56899999999999999999997  899999865 2212221211111112211   1222       234457899999


Q ss_pred             cCCCCC--CC--CCCHHH---HHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceE
Q 018314          103 PAGVPR--KP--GMTRDD---LFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLF  171 (358)
Q Consensus       103 ~ag~~~--~~--g~~r~~---~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kvi  171 (358)
                      .||...  ++  ..+..+   .+..|    ....+.+.+.|.+.. .+.||+++.-.....            .|..-.+
T Consensus        78 NAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~~~------------~~~~~~Y  144 (252)
T d1zmta1          78 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPFGP------------WKELSTY  144 (252)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTTSC------------CTTCHHH
T ss_pred             CCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccccccccc------------ccccccc
Confidence            887532  32  233332   22333    556688888888765 456676665443211            1111122


Q ss_pred             eeccccHHHHHHHHHHHcCCCCCCCceEEEe
Q 018314          172 GVTTLDVVRAKTFYAGKANVNVAEVNVPVVG  202 (358)
Q Consensus       172 G~t~lds~R~~~~la~~l~v~~~~v~~~v~G  202 (358)
                      +.+.-.-..|-+.+|+.++  ++.|++-.+-
T Consensus       145 ~asKaal~~lt~~lA~ela--~~gIrVN~I~  173 (252)
T d1zmta1         145 TSARAGACTLANALSKELG--EYNIPVFAIG  173 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTCCEEEEE
T ss_pred             ccccccHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            2221112345677777764  6667665553

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.12  Score=41.52  Aligned_cols=98  Identities=18%  Similarity=0.213  Sum_probs=59.5

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccccc--------CCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL--------EDS   97 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al--------~~a   97 (358)
                      +..+|.|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++.   .. .+... ..++..+..        .++
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a~-~~~~~-~~~~~~~~~~~~~~~~g~g~   98 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---AD-LVLQI-SKESPQEIARKVEGQLGCKP   98 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CS-EEEEC-SSCCHHHHHHHHHHHHTSCC
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---Cc-ccccc-cccccccccccccccCCCCc
Confidence            4568999997 9999999888887773 5899999876 233344332   11 11211 122222111        378


Q ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314           98 DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus        98 DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      |+||.+.|.+               ..+.   ..++-..|.+.+++++.|.+
T Consensus        99 Dvvid~~G~~---------------~~~~---~a~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          99 EVTIECTGAE---------------ASIQ---AGIYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             SEEEECSCCH---------------HHHH---HHHHHSCTTCEEEECSCCCS
T ss_pred             eEEEeccCCc---------------hhHH---HHHHHhcCCCEEEEEecCCC
Confidence            9999998642               1111   22333357888888877754

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.72  E-value=0.1  Score=45.21  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=82.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEe-cCCc----------ccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQ   92 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~   92 (358)
                      ..+.+.|+||++.+|..++..|+..+.  +|++.+.+.   .+....++.+...  ++..+. +-+|          ..+
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~   80 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLGA--QGVAIQADISKPSEVVALFDKAVS   80 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCChHHHHHHHHHHHHcCC--CceEecCCCCCHHHHHHHHHHHHH
Confidence            445788999999999999999999997  888866544   2333334443321  222221 1111          112


Q ss_pred             ccCCCCEEEEcCCCCCC-C--CCCH---HHHHHHHHH----HHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHh
Q 018314           93 ALEDSDVVIIPAGVPRK-P--GMTR---DDLFNINAG----IVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKA  162 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~-~--g~~r---~~~~~~N~~----i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~s  162 (358)
                      .+..-|++|..||.... +  ..+.   ...+..|+.    ..+...+.+++   ++.+++++......          .
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~---~g~~iii~s~~~~~----------~  147 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR---GGRIILTSSIAAVM----------T  147 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE---EEEEEEECCGGGTC----------C
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhc---CCcccccccccccc----------c
Confidence            34578999999986432 2  1222   233444543    44555555543   34444444322111          1


Q ss_pred             CCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          163 GTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       163 g~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      | +|..-.++.+.-.-..+-+.+|..++  +..|++-.+
T Consensus       148 ~-~~~~~~Y~asK~al~~l~r~lA~e~~--~~gIrvN~I  183 (259)
T d1ja9a_         148 G-IPNHALYAGSKAAVEGFCRAFAVDCG--AKGVTVNCI  183 (259)
T ss_dssp             S-CCSCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             C-CCCchhHHHHHHHHHHHHHHHHHHHh--hcCeEEecc
Confidence            1 22222222222222456677787775  566765544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.71  E-value=0.15  Score=44.21  Aligned_cols=156  Identities=13%  Similarity=0.159  Sum_probs=83.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCC-CccEEEEe-cCCc---c-------cccc
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINT-RSEVAGYM-GNDQ---L-------GQAL   94 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~-~~~v~~~~-~~~d---~-------~~al   94 (358)
                      +.+.|+||++.+|..++..|+..|.  +|++.|+++  .+..+.++..... ..++..+. +-+|   .       .+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3566779999999999999999997  899999876  3444555554322 22344432 1111   1       1223


Q ss_pred             CCCCEEEEcCCCCCC-----C--CCCHH---HHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHH
Q 018314           95 EDSDVVIIPAGVPRK-----P--GMTRD---DLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-----~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                      ..-|++|..||....     +  .++..   ..+..|    ....+.+.+.+++. ..++|+ ++.......        
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~-~~S~~~~~~--------  153 (264)
T d1spxa_          84 GKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVN-ISSIASGLH--------  153 (264)
T ss_dssp             SCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEE-ECCTTSSSS--------
T ss_pred             CCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCccee-eeeeccccc--------
Confidence            578999999986321     1  12322   233444    44567777777655 344444 433321110        


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        + .|..-.++.+.-.-..|-+.+|..++  ++.|++-.+
T Consensus       154 --~-~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V  189 (264)
T d1spxa_         154 --A-TPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSI  189 (264)
T ss_dssp             --C-CTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             --c-CCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEE
Confidence              0 11111122221112345677777763  666766555

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=94.64  E-value=0.034  Score=45.00  Aligned_cols=66  Identities=24%  Similarity=0.242  Sum_probs=39.1

Q ss_pred             CceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCcccccc-CCCCEEEEc
Q 018314           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQAL-EDSDVVIIP  103 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al-~~aDiVIi~  103 (358)
                      .+||+|||+ |.+|.. ....+...+. .+++++|.++.  ...+.++..    ..  .+   +|+++.+ .+.|+|+++
T Consensus         1 tirvgiiG~-G~~~~~~~~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~----~~--~~---~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           1 SLKIAMIGL-GDIAQKAYLPVLAQWPD-IELVLCTRNPKVLGTLATRYRV----SA--TC---TDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             CEEEEEECC-CHHHHHTHHHHHTTSTT-EEEEEECSCHHHHHHHHHHTTC----CC--CC---SSTTGGGGGCCSEEEEC
T ss_pred             CeEEEEEcC-CHHHHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHhccc----cc--cc---ccHHHhcccccceeccc
Confidence            479999998 999966 4555555443 38889998752  222222221    11  12   2334444 378999987


Q ss_pred             C
Q 018314          104 A  104 (358)
Q Consensus       104 a  104 (358)
                      .
T Consensus        70 t   70 (167)
T d1xeaa1          70 A   70 (167)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.61  E-value=0.012  Score=47.59  Aligned_cols=70  Identities=20%  Similarity=0.377  Sum_probs=46.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .||+|+||+|.+|..+...|..++ ...++.++..++..|+.  +....  .......   .....+.++|+++++.+
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~--~~~~~--~~~~~~~---~~~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKS--LKFKD--QDITIEE---TTETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCE--EEETT--EEEEEEE---CCTTTTTTCSEEEECSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccccc--ccccC--Ccccccc---cchhhhhhhhhhhhccC
Confidence            589999999999999999998886 36788887754322221  11111  1222221   12456789999999864

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.59  E-value=0.018  Score=51.86  Aligned_cols=37  Identities=24%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .++||+|||| |..|.+.|..|...+...+|++++...
T Consensus         3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            4568999998 999999999888877666999999875

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.55  E-value=0.038  Score=45.39  Aligned_cols=69  Identities=13%  Similarity=0.203  Sum_probs=42.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhhc-CCCCccEEEEecCCcccccc--CCCCEEEEcC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVGH-INTRSEVAGYMGNDQLGQAL--EDSDVVIIPA  104 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~-~~~~~~v~~~~~~~d~~~al--~~aDiVIi~a  104 (358)
                      +||+|||+ |.+|...+..+...+.+ +|+ ++|.++..+.  ++.. ...+...+.+   +|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~--~~~~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAK--AFATANNYPESTKIH---GSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHH--HHHHHTTCCTTCEEE---SSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccc--cchhccccccceeec---CcHHHhhhccccceeeecc
Confidence            69999997 99999998888776543 555 7787652222  2211 1122233443   3455544  5689999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.49  E-value=0.018  Score=43.96  Aligned_cols=41  Identities=17%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +...+..|.||+|||| |.+|.-+|..+...+.  ++.|++..+
T Consensus        15 ~l~~~~~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   55 (117)
T d1ebda2          15 ALNLGEVPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAG   55 (117)
T ss_dssp             HHTCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hhChhhcCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecc
Confidence            4455566789999998 9999999999998886  999999765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.47  E-value=0.012  Score=50.18  Aligned_cols=33  Identities=24%  Similarity=0.287  Sum_probs=30.3

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |||+|||| |..|.+.|+.|++.++  +|.|++..+
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            78999998 9999999999999998  899999754

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.30  E-value=0.22  Score=39.20  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=69.4

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++.|+||||+   +..|..++..|...++  +|+++..+..     ++.      ....+   .++.+.-..-|+|++..
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~-----~i~------G~~~~---~sl~dlp~~iD~v~i~v   82 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE-----EVL------GRKCY---PSVLDIPDKIEVVDLFV   82 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEECB---SSGGGCSSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc-----ccC------CCccc---ccccccCccceEEEEEe
Confidence            4589999986   4688999999999888  8998876431     011      12222   23333334688988873


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-c-cccHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t-~lds~R~  181 (358)
                                      +.+.+.++.+++.+.+.+++++   +|-..-.. +.+..+..|    -+++|= | +.+..||
T Consensus        83 ----------------p~~~~~~~~~e~~~~g~k~v~~---~~G~~~ee-~~~~a~~~g----i~vig~~C~~v~~~rl  137 (139)
T d2d59a1          83 ----------------KPKLTMEYVEQAIKKGAKVVWF---QYNTYNRE-ASKKADEAG----LIIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------CHHHHHHHHHHHHHHTCSEEEE---CTTCCCHH-HHHHHHHTT----CEEEESCCHHHHHHHH
T ss_pred             ----------------CHHHHHHHHHHHHHhCCCEEEE---eccccCHH-HHHHHHHCC----CEEEcCCcChhhhhhh
Confidence                            2455666666666777776544   44332222 233345666    478887 7 4555554

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.21  E-value=0.024  Score=43.78  Aligned_cols=41  Identities=12%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ....+..|.|++|||| |.+|.-+|..|...+.  ++.+++..+
T Consensus        16 ~~~l~~~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          16 ALSLKEIPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             HTTCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hhCcccCCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            4455556789999998 9999999999998877  999999865

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=94.20  E-value=0.034  Score=46.82  Aligned_cols=66  Identities=27%  Similarity=0.411  Sum_probs=47.6

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .+-..++|+|||. |.+|+.++..+..-+.  +|.-||.........   + ..  .      ..++.+.++.||+|++.
T Consensus        39 ~el~gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~~---~-~~--~------~~~l~~~l~~sDii~~~  103 (197)
T d1j4aa1          39 REVRDQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELEK---K-GY--Y------VDSLDDLYKQADVISLH  103 (197)
T ss_dssp             CCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHH---T-TC--B------CSCHHHHHHHCSEEEEC
T ss_pred             ccccCCeEEEecc-cccchhHHHhHhhhcc--cccccCccccccccc---c-ee--e------ecccccccccccccccc
Confidence            3445779999997 9999999999986665  999999765322211   1 11  1      13467889999999997


Q ss_pred             C
Q 018314          104 A  104 (358)
Q Consensus       104 a  104 (358)
                      .
T Consensus       104 ~  104 (197)
T d1j4aa1         104 V  104 (197)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.18  E-value=0.014  Score=47.77  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=31.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+.||+|||| |..|.+.|..|...++ .+|.++|...
T Consensus         3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGA-GPASISCASFLARLGY-SDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecC
Confidence            3569999998 9999999999999986 3589999865

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=94.16  E-value=0.021  Score=48.58  Aligned_cols=33  Identities=30%  Similarity=0.572  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +||+|||| |.-|.+.|+.|++.++  +|.++|..+
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            58999998 9999999999999998  999999754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.14  E-value=0.021  Score=46.93  Aligned_cols=71  Identities=18%  Similarity=0.346  Sum_probs=46.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCC---ccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTR---SEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~---~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      +.++|.|+|+ |+++.++++.|...+   +|++++++.  ++..+.++......   ..+..    .++...+.++|+||
T Consensus        17 ~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~dliI   88 (177)
T d1nvta1          17 KDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF----SGLDVDLDGVDIII   88 (177)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE----ECTTCCCTTCCEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhh----hhhhhccchhhhhc
Confidence            5569999998 999999988886443   899999875  33334444432111   12332    23455678999999


Q ss_pred             EcCC
Q 018314          102 IPAG  105 (358)
Q Consensus       102 i~ag  105 (358)
                      .+-.
T Consensus        89 n~tp   92 (177)
T d1nvta1          89 NATP   92 (177)
T ss_dssp             ECSC
T ss_pred             cCCc
Confidence            9753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.12  E-value=0.023  Score=51.08  Aligned_cols=39  Identities=18%  Similarity=0.287  Sum_probs=33.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHH
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGV   68 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~   68 (358)
                      +++||+|||| |--|.+.|..|+..+.  +|.+++.++ .-|.
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~iGG~   40 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDHIGGN   40 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSSSSGG
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCCCcCe
Confidence            3579999998 9999999999999887  999999876 3343

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.10  E-value=0.065  Score=43.50  Aligned_cols=36  Identities=25%  Similarity=0.450  Sum_probs=30.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+||.|+|| |+++.++++.|...+. .+|.+++++.
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccH
Confidence            4568999998 9999999999998874 5899999865

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=94.09  E-value=0.036  Score=46.65  Aligned_cols=100  Identities=24%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +...+-..++|+|+|. |.+|+.++..+..-+.  +|+.||.....+        . ......    .++++.++.||+|
T Consensus        38 ~~~~~l~~ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~--------~-~~~~~~----~~l~~l~~~~D~v  101 (199)
T d1dxya1          38 FIGKELGQQTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKG--------D-HPDFDY----VSLEDLFKQSDVI  101 (199)
T ss_dssp             CCCCCGGGSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSS--------C-CTTCEE----CCHHHHHHHCSEE
T ss_pred             cccccccceeeeeeec-ccccccccccccccce--eeeccCCccchh--------h-hcchhH----HHHHHHHHhcccc
Confidence            4444555679999998 9999999999986665  999999854211        0 112222    2467788999999


Q ss_pred             EEcCC-CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCc
Q 018314          101 IIPAG-VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNS  150 (358)
Q Consensus       101 Ii~ag-~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~  150 (358)
                      ++..- .+...++       -|.       +.++...+++++|+++=..=+
T Consensus       102 ~~~~plt~~T~~l-------i~~-------~~l~~mk~~a~lIN~aRG~vv  138 (199)
T d1dxya1         102 DLHVPGIEQNTHI-------INE-------AAFNLMKPGAIVINTARPNLI  138 (199)
T ss_dssp             EECCCCCGGGTTS-------BCH-------HHHHHSCTTEEEEECSCTTSB
T ss_pred             eeeeccccccccc-------ccH-------HHhhccCCceEEEecccHhhh
Confidence            99752 1111122       111       334445688999988765433

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.059  Score=43.30  Aligned_cols=66  Identities=15%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             CceEEEEcCCCChHHH-HHHHHHhCCCCcEEEEEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAAGGIGQP-LALLMKLNPLVSRLALYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      .+||+|||+ |.+|.. ....+...+.+.-+.++|.++.  ...+.++.       +..+   +++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~-------~~~~---~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR-------IPYA---DSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT-------CCBC---SSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccc-------cccc---ccchhhhhhcccccccc
Confidence            379999997 999975 5666766654444568898763  22222221       1121   34455568999998874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.02  E-value=0.022  Score=45.46  Aligned_cols=36  Identities=31%  Similarity=0.375  Sum_probs=31.0

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+||+|||| |.+|..+|..|...+.-.+|+|+|.++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            359999998 999999999998876555999999875

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.02  E-value=0.021  Score=47.26  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |||+|||| |.+|..+|..|...+...+|.+++.++
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999998 999999999998766556999998654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=93.86  E-value=0.052  Score=46.18  Aligned_cols=71  Identities=18%  Similarity=0.177  Sum_probs=41.6

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEE-EEecCCc--HHHHHHhhcCCCCccEEEEecCCccccccC--CCCEE
Q 018314           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANT--PGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~-L~D~~~~--~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiV  100 (358)
                      ++.||+|||+ |.+|.. ++..+...+.+ +|+ ++|+++.  +..+.++. .. ...+..+   +|+++.++  +.|+|
T Consensus        32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~-i~-~~~~~~~---~d~~ell~~~~iD~V  104 (221)
T d1h6da1          32 RRFGYAIVGL-GKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYG-VD-PRKIYDY---SNFDKIAKDPKIDAV  104 (221)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTT-CC-GGGEECS---SSGGGGGGCTTCCEE
T ss_pred             CCEEEEEEcC-cHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhc-cc-ccccccc---Cchhhhcccccceee
Confidence            5679999998 999964 45555544433 555 8998762  22222221 11 1234433   45556564  68889


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      +++.
T Consensus       105 ~I~t  108 (221)
T d1h6da1         105 YIIL  108 (221)
T ss_dssp             EECS
T ss_pred             eecc
Confidence            8874

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.77  E-value=0.5  Score=40.36  Aligned_cols=55  Identities=22%  Similarity=0.212  Sum_probs=35.6

Q ss_pred             eEEEE-cCCCChHHHHHHHHHhC-CCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEE
Q 018314           30 KVAVL-GAAGGIGQPLALLMKLN-PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGY   84 (358)
Q Consensus        30 KI~Ii-GA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~   84 (358)
                      ||+|| ||++++|..++..|+.. .-...|++.|+++  .+..+.++.......++..+
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~   65 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLA   65 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEE
Confidence            66666 99899999999999863 1223899999876  34444555433222344443

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.77  E-value=0.12  Score=44.09  Aligned_cols=117  Identities=20%  Similarity=0.240  Sum_probs=73.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC----------cHHHHHHhhcCCCCccEEEEecCCccccccC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN----------TPGVAADVGHINTRSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~----------~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~   95 (358)
                      -+..||.|.|| |..|..++..+...+ ..+++++|.+-          ......++.+.......     ..++.++++
T Consensus        24 l~d~riv~~GA-GsAg~gia~~l~~~~-~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~l~   96 (222)
T d1vl6a1          24 IEEVKVVVNGI-GAAGYNIVKFLLDLG-VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERL-----SGDLETALE   96 (222)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHT-CCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCC-----CSCHHHHHT
T ss_pred             hhhcEEEEECh-HHHHHHHHHHHHHhc-ccceEeecceeEEEcCcccccccHHHHHHHhhhcchhh-----hcchHhhcc
Confidence            34569999998 999999998887765 36999999863          11122223222211111     245678899


Q ss_pred             CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314           96 DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus        96 ~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      ++|+++-+..    +|.-+.              +.|++.+++.+|+-.|||..-...-  +.|. .|    .-+++.+
T Consensus        97 g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e~~--~a~~-~G----~ai~AtG  150 (222)
T d1vl6a1          97 GADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEIDPE--LARE-AG----AFIVATG  150 (222)
T ss_dssp             TCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSCHH--HHHH-TT----CSEEEES
T ss_pred             Ccceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchhhh--hhee-cc----ceEEecC
Confidence            9998777652    232111              2466778899998899998755432  2243 24    4566664

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=93.70  E-value=0.022  Score=49.20  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=31.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||.|+|+ |++|+.++..|+..|+ ++|+|+|-+.
T Consensus        30 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            459999998 9999999999999985 6999999764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.65  E-value=0.42  Score=40.69  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=30.0

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+++.|+||+|  ++|.++|..|+..|.  +|+|.+.++
T Consensus         6 gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~   42 (268)
T d2h7ma1           6 GKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDR   42 (268)
T ss_dssp             TCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCCh
Confidence            45899999755  499999999999997  899999876

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.041  Score=46.25  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=60.7

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEe---------------------c
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYM---------------------G   86 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~---------------------~   86 (358)
                      +||.|||. |.-|..++..+...++ ..+.+.+|.+.   +.  |.+.....++..-.                     .
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~~--L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~   74 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL---QV--LEASNADVKIQIGENITRGLGAGGRPEIGEQAALES   74 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH---HH--HHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHT
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH---HH--HhcCCcceEEecccccCCCcccccCchhhHhHHHHH
Confidence            58999998 9999999988877664 34888888763   22  23222111222100                     0


Q ss_pred             CCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           87 NDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        87 ~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ...+.+.+.++|+||++||.--..|       ..=.|++-++++.   +. --.+-++|=|-
T Consensus        75 ~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake---~g-~lvv~ivtlPF  125 (194)
T d1w5fa1          75 EEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKE---MG-ILTVAIVTTPF  125 (194)
T ss_dssp             HHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHH---cC-CceEEEEeech
Confidence            1234567899999999987643222       2335555555554   32 12345566665

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.56  E-value=0.027  Score=43.04  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             CCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           24 ESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        24 ~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+..|.||+|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        17 l~~~p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          17 LPALPERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             hhhCCCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            3345679999998 9999999999998887  999999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.028  Score=40.27  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=29.7

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +++|+|+|+ |+.|+.++......|+  +++.+|.++
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            358999997 9999999988887787  999999865

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.42  E-value=0.037  Score=47.21  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |+||+|||| |-.|.++|..|.+.|+ ..|.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            689999998 9999999999999884 2788999854

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.30  E-value=0.13  Score=44.29  Aligned_cols=157  Identities=13%  Similarity=0.107  Sum_probs=84.0

Q ss_pred             CceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCc---c-------cccc
Q 018314           28 DRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ---L-------GQAL   94 (358)
Q Consensus        28 ~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d---~-------~~al   94 (358)
                      .+++.|+||+|  ++|..++..|+..|.  +|++.|.++ ....+.++......... ...+-.|   .       .+.+
T Consensus         8 gK~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~~~~~~~~~~   84 (256)
T d1ulua_           8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALL-FRADVTQDEELDALFAGVKEAF   84 (256)
T ss_dssp             TCEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEE-EECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccc-cccccCCHHHHHHHHHHHHHhc
Confidence            45799999876  699999999999997  899999876 33333333222111111 1111111   1       1234


Q ss_pred             CCCCEEEEcCCCCCC-------CCCCHHH---HHHHHHHHHHHHHHHHHhhC-CCeEEEEeeCCCCcchHHHHHHHHHhC
Q 018314           95 EDSDVVIIPAGVPRK-------PGMTRDD---LFNINAGIVKDLCSAIAKYC-PNAIVNMISNPVNSTVPIAAEVFKKAG  163 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~-------~g~~r~~---~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tNP~d~~t~~~~~~~~~sg  163 (358)
                      ..-|++|..||....       .+.+..+   .+.-|+.-...+++....+- ..+.||+++.-...           .+
T Consensus        85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~-----------~~  153 (256)
T d1ulua_          85 GGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE-----------KV  153 (256)
T ss_dssp             SSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----------SB
T ss_pred             CCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-----------CC
Confidence            568999999886321       1233332   34455544444554444332 35667776543321           11


Q ss_pred             CCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          164 TYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       164 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                       .|..-.++.+.-.-..+-+.+|..++  ++.|++-.+
T Consensus       154 -~~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I  188 (256)
T d1ulua_         154 -VPKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAI  188 (256)
T ss_dssp             -CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEE
T ss_pred             -CCCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeee
Confidence             22222233322122345677787774  666766555

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.30  E-value=0.055  Score=41.37  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=31.8

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..+. +.||+|||| |.+|.-+|..|...+.  ++.|++..+
T Consensus        18 ~l~~-p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKE-SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             TCCC-CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             ccCC-CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            3443 689999998 9999999999987776  999999754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.18  E-value=0.077  Score=43.42  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             CCceEEEEcCCCChHHH-HHHHHHhCCCCcEEE-EEecCCcHHHHHHhhcCCCCccEEEEecCCccccccC--CCCEEEE
Q 018314           27 PDRKVAVLGAAGGIGQP-LALLMKLNPLVSRLA-LYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALE--DSDVVII  102 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~-~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~--~aDiVIi  102 (358)
                      +++||+|||+ |.+|.. .+..+...+...+|+ ++|.++...  ..+.+...  ....+   +|+++.++  +.|+|++
T Consensus         2 kkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~--~~~~~~~~--~~~~~---~~~~ell~~~~id~v~I   73 (181)
T d1zh8a1           2 RKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHA--EEFAKMVG--NPAVF---DSYEELLESGLVDAVDL   73 (181)
T ss_dssp             CCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH--HHHHHHHS--SCEEE---SCHHHHHHSSCCSEEEE
T ss_pred             CCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhh--hhhhcccc--cccee---eeeeccccccccceeec
Confidence            3579999997 999986 466666544333555 788765222  22221111  11223   34555554  6788888


Q ss_pred             cC
Q 018314          103 PA  104 (358)
Q Consensus       103 ~a  104 (358)
                      +.
T Consensus        74 ~t   75 (181)
T d1zh8a1          74 TL   75 (181)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.17  E-value=0.019  Score=51.46  Aligned_cols=129  Identities=22%  Similarity=0.312  Sum_probs=71.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh----CCC-----CcEEEEEecCC--cHHHHHHhhcCC-CCccEEEEecCCcccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIAN--TPGVAADVGHIN-TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~--~~~~~~dl~~~~-~~~~v~~~~~~~d~~~al   94 (358)
                      ...||.|.|| |.-|..++..+..    .++     ...|+++|...  .++...++.... ...+-.......++.+++
T Consensus        24 ~d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L~e~i  102 (294)
T d1pj3a1          24 SEHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV  102 (294)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHHHHHH
Confidence            4459999998 9999888876543    333     14699999864  111111111110 000000000113466665


Q ss_pred             C--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           95 E--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        95 ~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +  +.|++|-+.|.+.   -           +-+++.+.|.+.+++.+|+-.+||..-.-....++++.+.   -+-+|.
T Consensus       103 ~~~kptvliG~S~~~g---~-----------ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~---grai~a  165 (294)
T d1pj3a1         103 NILKPSTIIGVAGAGR---L-----------FTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTE---GRCLFA  165 (294)
T ss_dssp             HHHCCSEEEECCCSSC---C-----------SCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTT---TCCEEE
T ss_pred             HhcCCceEEEecCCCC---c-----------CCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhcc---CceEee
Confidence            5  7888888765432   1           1145566677889999999999997532211234455442   244554


Q ss_pred             e
Q 018314          173 V  173 (358)
Q Consensus       173 ~  173 (358)
                      .
T Consensus       166 s  166 (294)
T d1pj3a1         166 S  166 (294)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.12  E-value=0.17  Score=43.98  Aligned_cols=115  Identities=18%  Similarity=0.123  Sum_probs=65.4

Q ss_pred             CceEE-EEcCCCChHHHHHHHHHhC-CCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cCCc----------ccc
Q 018314           28 DRKVA-VLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GNDQ----------LGQ   92 (358)
Q Consensus        28 ~~KI~-IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~~d----------~~~   92 (358)
                      .++|+ |+||++++|..++..|+.. +.  .|++.++++  .+..+.+|.....  ++..+. +-+|          ..+
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dvs~~~sv~~~~~~~~~   77 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGL--SPRFHQLDIDDLQSIRALRDFLRK   77 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEEecCCHHHHHHHHHHHHH
Confidence            45786 5699999999999988864 55  899999886  2334445543321  122211 1112          123


Q ss_pred             ccCCCCEEEEcCCCCCC-CC--CCHH---HHHHHHHHHHHHHHHHHHhhC-CCeEEEEeeC
Q 018314           93 ALEDSDVVIIPAGVPRK-PG--MTRD---DLFNINAGIVKDLCSAIAKYC-PNAIVNMISN  146 (358)
Q Consensus        93 al~~aDiVIi~ag~~~~-~g--~~r~---~~~~~N~~i~~~i~~~i~~~~-p~a~iiv~tN  146 (358)
                      .+..-|++|..||.... +.  .+..   ..+.-|.--...+++.+-.+- +.+.+|+++.
T Consensus        78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            34678999999997432 21  2222   234455444444444443332 3567776664

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.01  E-value=0.045  Score=46.90  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +..||+|||| |--|.+.|+.|+..|+  +|.+++...
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4568999998 9999999999999998  899998754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.12  Score=42.06  Aligned_cols=91  Identities=18%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ..++++|+|- |.+|..+|..+...+-  .|..+|+++..+...- .+..   ++.      .+++++..||+||.+.|.
T Consensus        23 ~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A~-~dG~---~v~------~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          23 AGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQAA-MEGY---EVT------TMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHH-HTTC---EEC------CHHHHTTTCSEEEECSSC
T ss_pred             cCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHhh-cCce---Eee------ehhhhhhhccEEEecCCC
Confidence            3458999997 9999999999998776  9999999874333221 1211   222      246889999999998764


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +.--+                 .+.+++..+.+++.+++--
T Consensus        90 ~~vI~-----------------~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          90 IDIIL-----------------GRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             SCSBC-----------------HHHHTTCCTTEEEEECSSS
T ss_pred             ccchh-----------------HHHHHhccCCeEEEEeccc
Confidence            32111                 2345555677877777533

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.85  E-value=0.06  Score=41.15  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ....+..|.||+|||| |.+|.-+|..++..|.  ++.++...+
T Consensus        15 ~l~l~~~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          15 ALDFQNVPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             HTSCSSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             hhCcccCCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            4455667789999998 9999999999998887  888888754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.70  E-value=0.066  Score=45.43  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=32.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .....||+|||| |..|.+.|..|+..++  ++.++|...
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeecc
Confidence            346779999998 9999999999999998  999999865

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=92.66  E-value=0.097  Score=42.73  Aligned_cols=58  Identities=21%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      -..++|+|||.+.-||..++.+|...+.  .+...+..                       +.++.+.+++||+||.++|
T Consensus        35 l~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G   89 (166)
T d1b0aa1          35 TFGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVG   89 (166)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSC
T ss_pred             cccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhcc
Confidence            4567999999977899999999998875  66655532                       1234566788899888888


Q ss_pred             CCC
Q 018314          106 VPR  108 (358)
Q Consensus       106 ~~~  108 (358)
                      .|.
T Consensus        90 ~p~   92 (166)
T d1b0aa1          90 KPG   92 (166)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            664

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.65  E-value=0.12  Score=42.72  Aligned_cols=73  Identities=15%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CCceEEEEcC-CCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCC--CCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGA-AGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHIN--TRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA-~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +..||+++|= ..+|..+++..+...|.  ++++.-+..   ......+.....  ....++.+   +|++++++++|+|
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~eai~~aDvV   78 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLT---EDPKEAVKGVDFV   78 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEE---SCHHHHTTTCSEE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEE---eChhhccccccEE
Confidence            4679999993 13688888888887776  999998754   122222222110  12345543   5778999999998


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      ....
T Consensus        79 yt~~   82 (185)
T d1dxha2          79 HTDV   82 (185)
T ss_dssp             EECC
T ss_pred             Eeeh
Confidence            8764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.65  E-value=0.036  Score=44.92  Aligned_cols=36  Identities=25%  Similarity=0.471  Sum_probs=24.5

Q ss_pred             CCceEEEEcCCCChHHHHHH-HHHhCCCCcEEEEE-ecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLAL-LMKLNPLVSRLALY-DIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~-~l~~~~~~~ei~L~-D~~~   64 (358)
                      +++||+|||+ |.+|..+.. .+...+. .|++++ |++.
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~-~el~avas~~~   40 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKY-LEMGAMVGIDA   40 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSS-EEEEEEECSCT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCc-ceEEEEEecch
Confidence            4589999996 999987544 4444454 366665 6654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.64  E-value=0.041  Score=47.30  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=29.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .|+|||| |-+|.++|+.|++.+.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4999998 9999999999999986  899999764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.08  Score=40.24  Aligned_cols=34  Identities=21%  Similarity=0.328  Sum_probs=30.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..||+|+|+ |+.|..++......++  +++.+|.++
T Consensus        11 ~~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~   44 (111)
T d1kjqa2          11 ATRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYA   44 (111)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESST
T ss_pred             CCEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCC
Confidence            359999997 9999999999888887  999999875

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.56  E-value=0.068  Score=45.36  Aligned_cols=104  Identities=18%  Similarity=0.314  Sum_probs=59.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEEe---------------------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGYM---------------------   85 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~---------------------   85 (358)
                      ..||.|||. |+-|..++..+...++ ..+.+.+|.+.   +  +|.+...+.++..-.                     
T Consensus        15 ~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~---~--~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e   88 (209)
T d2vapa1          15 KAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA---Q--QLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKE   88 (209)
T ss_dssp             CCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH---H--HHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHH
T ss_pred             CCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH---H--HHhcCCcchhcccccccccccccccchHHHHHHHHH
Confidence            469999998 9999999998888764 35788888763   2  223222111111100                     


Q ss_pred             cCCccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           86 GNDQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        86 ~~~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      ....+.+.++++|.||++||.--..|       ..=.+++-++++.   .. .-.+-++|=|-
T Consensus        89 ~~~~I~~~l~~~d~vfi~AGlGGGTG-------sgaapvia~~ake---~g-~lvv~ivtlPF  140 (209)
T d2vapa1          89 SAEEIKAAIQDSDMVFITCGLGGGTG-------TGSAPVVAEISKK---IG-ALTVAVVTLPF  140 (209)
T ss_dssp             THHHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHHhccCCCEEEEEEeCCCCcc-------ccHHHHHHHHHHH---cC-CcEEEEEecch
Confidence            00134567889999999887543222       2334554444444   22 12344456665

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.066  Score=41.24  Aligned_cols=41  Identities=15%  Similarity=0.123  Sum_probs=33.9

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +...+..++||+|||| |.+|.-+|..+...+.  +|.+++..+
T Consensus        15 ~~~l~~~pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          15 FFQLEELPGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             HTTCCSCCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             HhChhhcCCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            3344445679999998 9999999999998887  999999865

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.54  E-value=0.065  Score=41.20  Aligned_cols=41  Identities=17%  Similarity=-0.014  Sum_probs=33.8

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +...+..|.|++|||| |.+|.-+|..+...+.  +|.++..++
T Consensus        13 ~~~l~~~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          13 LFSLPYCPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             HTTCSSCCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             HhCcccCCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            4455667789999998 9999999999998886  888887654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.52  E-value=0.05  Score=45.80  Aligned_cols=35  Identities=17%  Similarity=0.246  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .||+|||| |-.|.+.|..|...+..-+|.+||..+
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            49999998 999999999887764434999999875

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.38  E-value=0.13  Score=43.84  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             CCCceEEEEcCCCChH----HHHHHHHHhCCCCcEEE-EEecCCcHH--HHHHhhcCCCCccEEEEecCCcccccc--CC
Q 018314           26 VPDRKVAVLGAAGGIG----QPLALLMKLNPLVSRLA-LYDIANTPG--VAADVGHINTRSEVAGYMGNDQLGQAL--ED   96 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG----~~~a~~l~~~~~~~ei~-L~D~~~~~~--~~~dl~~~~~~~~v~~~~~~~d~~~al--~~   96 (358)
                      .+++||+|||+ |.+|    ......+.......+|+ ++|++....  .+..+   .. .....+   .|+++.+  .+
T Consensus        14 ~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~---~~-~~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          14 SRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL---QL-KHATGF---DSLESFAQYKD   85 (237)
T ss_dssp             GCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT---TC-TTCEEE---SCHHHHHHCTT
T ss_pred             CCCeEEEEEec-CccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhc---cc-ccceee---cchhhcccccc
Confidence            46789999998 7643    33344554433223666 888865222  22222   11 123333   3445555  46


Q ss_pred             CCEEEEcC
Q 018314           97 SDVVIIPA  104 (358)
Q Consensus        97 aDiVIi~a  104 (358)
                      -|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            77888874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.19  Score=41.13  Aligned_cols=37  Identities=19%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +-..++|+|||.+.-||..++.+|++.+-  .+..++..
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~   72 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK   72 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccC--ceEEEecc
Confidence            34567999999977899999999998875  77777754

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.26  E-value=0.72  Score=39.02  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=65.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHh---CCCCcEEEEEecCCcH-HHHHHhhcCCCCccEEEEe-cCCc---ccc-------
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKL---NPLVSRLALYDIANTP-GVAADVGHINTRSEVAGYM-GNDQ---LGQ-------   92 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~---~~~~~ei~L~D~~~~~-~~~~dl~~~~~~~~v~~~~-~~~d---~~~-------   92 (358)
                      |+.|.|+||++++|..++..|+.   .+.  .|++.++++.. ....++....  .++..+. +-+|   .++       
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNH--SNIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHC--TTEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcC--CcEEEEEEEeccHHHHHHHHhhhHH
Confidence            45799999999999999988764   444  89999988721 1222332221  1333322 1111   111       


Q ss_pred             --ccCCCCEEEEcCCCCCCCC----CCHH---HHHHHH----HHHHHHHHHHHHhhC----------CCeEEEEeeCC
Q 018314           93 --ALEDSDVVIIPAGVPRKPG----MTRD---DLFNIN----AGIVKDLCSAIAKYC----------PNAIVNMISNP  147 (358)
Q Consensus        93 --al~~aDiVIi~ag~~~~~g----~~r~---~~~~~N----~~i~~~i~~~i~~~~----------p~a~iiv~tNP  147 (358)
                        ....-|++|..||.....+    .+..   +.+.-|    ....+.+.+.+++..          ..+.+|+++.-
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~  155 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI  155 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence              1235899999998743221    2222   233344    445567777776541          24566666543

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.25  E-value=0.12  Score=44.16  Aligned_cols=157  Identities=14%  Similarity=0.157  Sum_probs=84.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC--cHHHHHHhhcCCCCccEEEEe-cC-------CccccccCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN--TPGVAADVGHINTRSEVAGYM-GN-------DQLGQALED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~--~~~~~~dl~~~~~~~~v~~~~-~~-------~d~~~al~~   96 (358)
                      +.+.+.|+||++++|..++..|+..|.  .|++.|+++  .+....++.....  ...... ..       .........
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   79 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGNNCV--FAPADVTSEKDVQTALALAKGKFGR   79 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCTTEE--EEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCCCcc--ccccccccccccccccccccccccc
Confidence            445677899999999999999999997  899999987  3444445543210  000000 00       001223455


Q ss_pred             CCEEEEcCCCCC-------CCC--CC---HHHHHHHHH----HHHHHHHHHHHhhC-----CCeEEEEeeCCCCcchHHH
Q 018314           97 SDVVIIPAGVPR-------KPG--MT---RDDLFNINA----GIVKDLCSAIAKYC-----PNAIVNMISNPVNSTVPIA  155 (358)
Q Consensus        97 aDiVIi~ag~~~-------~~g--~~---r~~~~~~N~----~i~~~i~~~i~~~~-----p~a~iiv~tNP~d~~t~~~  155 (358)
                      -|+.+..++...       ++.  .+   -...+..|+    -+.+.+.+.+....     ..+.||+++....      
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~------  153 (248)
T d2o23a1          80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAA------  153 (248)
T ss_dssp             CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHH------
T ss_pred             ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhh------
Confidence            778777655321       111  11   122344443    44455666655432     3466776655431      


Q ss_pred             HHHHHHhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          156 AEVFKKAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       156 ~~~~~~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                           ..+ .|..-.++.+.-.-..|-+.+|+.++  ++.|++-.+
T Consensus       154 -----~~~-~~~~~~Y~asKaal~~lt~~la~e~~--~~gIrvN~I  191 (248)
T d2o23a1         154 -----FEG-QVGQAAYSASKGGIVGMTLPIARDLA--PIGIRVMTI  191 (248)
T ss_dssp             -----HHC-CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -----ccC-CCCchHHHHHHHHHHHHHHHHHHHhc--ccCcceeee
Confidence                 122 33322333332222456777787774  666766555

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.17  E-value=0.041  Score=47.84  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.6

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ||+|||| |-+|.++|..|...++  ++.++|..+
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            7999998 9999999999999998  899999764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.03  E-value=0.092  Score=40.89  Aligned_cols=35  Identities=29%  Similarity=0.438  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++.||+|||| |.+|.-+|..|...+.  ++.+++..+
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            4569999998 9999999999999887  999999865

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.01  E-value=0.054  Score=44.48  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .||+|||| |-.|.+.|+.|++.++ .+|+++|..+
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCC
Confidence            38999998 9999999999999884 2699999764

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.94  E-value=0.21  Score=42.66  Aligned_cols=75  Identities=17%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc---HHHHHHhhcCCCCccEEEEecC-Cc-------------cccc
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT---PGVAADVGHINTRSEVAGYMGN-DQ-------------LGQA   93 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~---~~~~~dl~~~~~~~~v~~~~~~-~d-------------~~~a   93 (358)
                      ..|+||++++|.+++..|+..|.  +|++.|++..   +..+.++........+...... .+             ..+.
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            35779999999999999999997  9999998762   2334444433211111111100 00             1123


Q ss_pred             cCCCCEEEEcCCCC
Q 018314           94 LEDSDVVIIPAGVP  107 (358)
Q Consensus        94 l~~aDiVIi~ag~~  107 (358)
                      +..-|++|..||..
T Consensus        82 ~g~iDilvnnAG~~   95 (266)
T d1mxha_          82 FGRCDVLVNNASAY   95 (266)
T ss_dssp             HSCCCEEEECCCCC
T ss_pred             hCCCCEEEECCccC
Confidence            45689999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.90  E-value=0.053  Score=45.33  Aligned_cols=33  Identities=30%  Similarity=0.348  Sum_probs=26.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC----CcEEEEEec
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL----VSRLALYDI   62 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~----~~ei~L~D~   62 (358)
                      |||+|||| |-+|.++|+.|++.++    +.++.+++.
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            79999998 9999999999998763    345666654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.86  E-value=0.041  Score=46.12  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=30.9

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCC-----CcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPL-----VSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~-----~~ei~L~D~~~   64 (358)
                      +|.||+|||| |--|.+.|+.|+..++     .-+|.+||..+
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            4679999998 9999999999988752     24899999876

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.85  E-value=0.32  Score=39.02  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=47.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHH---HhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAA---DVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~---dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      ...||+++|-..+|..+++..+..-+.  ++.+.-...   ......   +..+.. ...++.+   .|+.+++++||+|
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~d~~ea~~~advi   76 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELL---HDPVKAVKDADVI   76 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEE---SCHHHHTTTCSEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcc-cceEEEe---cCHHHHhhhccEE
Confidence            467999999855677777777777776  899998764   121111   111111 2345543   5678999999998


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      ..+-
T Consensus        77 y~~~   80 (163)
T d1pvva2          77 YTDV   80 (163)
T ss_dssp             EECC
T ss_pred             eecc
Confidence            8764

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.76  E-value=0.46  Score=38.42  Aligned_cols=101  Identities=20%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCC-cccc-----ccCCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGND-QLGQ-----ALEDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~-d~~~-----al~~aD   98 (358)
                      ++..+|.|+|+ |.+|...+..+...+ ...|+..|.++ ....+.++....    +-.....+ ...+     .=.++|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAKALGATD----CLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCSE----EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhC-CceeeeeccchHHHHHHHHhCCCc----ccCCccchhhhhhhHhhhhcCCCc
Confidence            35569999997 999999988888777 35789999987 445555554211    11000001 0111     126899


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEEeeCCCCc
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPN-AIVNMISNPVNS  150 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~-a~iiv~tNP~d~  150 (358)
                      +||.+.|.+.                  .+-..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~~------------------~~~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTAQ------------------TLKAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCHH------------------HHHHHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccch------------------HHHHHHHHhhcCCeEEEecCCCCCc
Confidence            9999987531                  122233434564 788889888663

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.70  E-value=0.072  Score=44.81  Aligned_cols=102  Identities=19%  Similarity=0.256  Sum_probs=62.1

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEE-------E--------------ecC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAG-------Y--------------MGN   87 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~-------~--------------~~~   87 (358)
                      +|-|||- |..|.+++..+...++ ..+++.+|.+.   +.++..+..  .++..       .              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~L~~~~~~--~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QALLMSDAD--VKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HHHHHCCCS--EEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HHHhcCCcc--hhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6889997 9999999999988774 34777777653   222222211  11111       0              011


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +.+.+.++++|+||++||.--..|       ..=+|++-+++++..    --.+-++|-|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF  126 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECC
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecCh
Confidence            235578999999999998643222       233677777777653    12345567775

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.52  E-value=0.058  Score=44.39  Aligned_cols=80  Identities=24%  Similarity=0.327  Sum_probs=50.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcH----HHHHHhhcCCCCccEEEEecCCccccccCCCCEE
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTP----GVAADVGHINTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~----~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +-+.++|+|||.+.-||..++.+|...+-  .+.+.|++...    .....+.+... ..+..++ .+++++....||+|
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~lk~~~~~aDIv  101 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKHHV-EDLGEYS-EDLLKKCSLDSDVV  101 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCCEE-EEEEECC-HHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeeecc-ccccccc-hhHHhhccccCCEE
Confidence            45677999999866889999999998875  78888875411    11111111110 1122211 13356677899999


Q ss_pred             EEcCCCCC
Q 018314          101 IIPAGVPR  108 (358)
Q Consensus       101 Ii~ag~~~  108 (358)
                      |...|.|.
T Consensus       102 IsavG~p~  109 (171)
T d1edza1         102 ITGVPSEN  109 (171)
T ss_dssp             EECCCCTT
T ss_pred             EEccCCCc
Confidence            99998765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.31  E-value=0.17  Score=40.63  Aligned_cols=100  Identities=17%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCc-cccccCCCCEEEEc
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQ-LGQALEDSDVVIIP  103 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d-~~~al~~aDiVIi~  103 (358)
                      ++..+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++.-   . .+-.+....+ .++...+.|+|+.+
T Consensus        26 ~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lGa---~-~~i~~~~~~~~~~~~~~~~d~vi~~   98 (168)
T d1piwa2          26 GPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMGA---D-HYIATLEEGDWGEKYFDTFDLIVVC   98 (168)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHTC---S-EEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred             CCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccCC---c-EEeeccchHHHHHhhhcccceEEEE
Confidence            45679999998 9999998887777775  888999876 3445555541   1 1111111112 22345678999998


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .+.+.....+                ..++-..|.+.+++++-|.
T Consensus        99 ~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2          99 ASSLTDIDFN----------------IMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CSCSTTCCTT----------------TGGGGEEEEEEEEECCCCC
T ss_pred             ecCCccchHH----------------HHHHHhhccceEEEecccc
Confidence            7654322211                1234445888888886544

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.98  E-value=0.085  Score=46.04  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=29.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .+|.|||| |-+|.++|+.|+..+. .+|+|+|.+.
T Consensus         2 ~dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            38999998 9999999999998874 3799999764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.64  Score=40.51  Aligned_cols=154  Identities=12%  Similarity=0.131  Sum_probs=79.5

Q ss_pred             ceEEEE-cCCCChHHHHHHHHHhCCCCcEEEEEec---CC--cHHH---HHHhhcCCCCccEEEEe-cCCccc-------
Q 018314           29 RKVAVL-GAAGGIGQPLALLMKLNPLVSRLALYDI---AN--TPGV---AADVGHINTRSEVAGYM-GNDQLG-------   91 (358)
Q Consensus        29 ~KI~Ii-GA~G~vG~~~a~~l~~~~~~~ei~L~D~---~~--~~~~---~~dl~~~~~~~~v~~~~-~~~d~~-------   91 (358)
                      +||++| ||++++|..++..|+..+.  .+++++.   +.  ....   +..+...  ..++.... +-+|.+       
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~   77 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACP--PGSLETLQLDVRDSKSVAAARE   77 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCC--TTSEEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhcc--CCceEEEeccccchHhhhhhhh
Confidence            487755 9999999999999999885  4444433   21  1111   1222211  22344332 112211       


Q ss_pred             c-ccCCCCEEEEcCCCCCCCC---CCH---HHHHHHH----HHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHH
Q 018314           92 Q-ALEDSDVVIIPAGVPRKPG---MTR---DDLFNIN----AGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFK  160 (358)
Q Consensus        92 ~-al~~aDiVIi~ag~~~~~g---~~r---~~~~~~N----~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~  160 (358)
                      + .-..-|++|..+|......   .+.   ...+.-|    +...+.+.+.|.+.. .+.||+++.-....         
T Consensus        78 ~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS~~g~~---------  147 (285)
T d1jtva_          78 RVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGSVGGLM---------  147 (285)
T ss_dssp             TCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEEGGGTS---------
T ss_pred             hccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEechhhcC---------
Confidence            0 0146899999988643221   222   2234444    456778888888765 46666665433211         


Q ss_pred             HhCCCCCCceEeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          161 KAGTYNEKKLFGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       161 ~sg~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                        + .|..-.++.+.-.-..|-+.++..+  .++.|++..+
T Consensus       148 --~-~~~~~~Y~asKaal~~l~~~la~El--~~~gIrVn~V  183 (285)
T d1jtva_         148 --G-LPFNDVYCASKFALEGLCESLAVLL--LPFGVHLSLI  183 (285)
T ss_dssp             --C-CTTCHHHHHHHHHHHHHHHHHHHHH--GGGTEEEEEE
T ss_pred             --C-CCCchHHHHHHHHHHHHHHHHHHHh--hccCcEEEEE
Confidence              1 2222222222211234556666665  4566766555

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.87  E-value=0.16  Score=41.76  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=44.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCC---C--------CccEEEEecCCccccccC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHIN---T--------RSEVAGYMGNDQLGQALE   95 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~---~--------~~~v~~~~~~~d~~~al~   95 (358)
                      |.||+|.|. |.+|..++-.+..++-+.-+.+.|..+. .....-..+..   .        ...+..   ..++...+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPV---AGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCC---CCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceec---CCchhhhhh
Confidence            579999997 9999999999988875434444555442 11111111100   0        011111   134456678


Q ss_pred             CCCEEEEcCCC
Q 018314           96 DSDVVIIPAGV  106 (358)
Q Consensus        96 ~aDiVIi~ag~  106 (358)
                      ++|+||.+.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=90.71  E-value=0.15  Score=41.50  Aligned_cols=97  Identities=21%  Similarity=0.232  Sum_probs=57.7

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccccc------CCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aD   98 (358)
                      ++..+|.|+|+ |.||...+..+...+. ..|+..|.++ ....+.++.-..   -+. +. .++..+.+      +++|
T Consensus        26 ~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa~~---~i~-~~-~~~~~~~v~~~t~g~G~D   98 (174)
T d1jqba2          26 EMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGATD---ILN-YK-NGHIEDQVMKLTNGKGVD   98 (174)
T ss_dssp             CTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTCSE---EEC-GG-GSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCccc---ccc-cc-chhHHHHHHHHhhccCcc
Confidence            35668999997 9999998888777663 4699999876 334444443110   011 11 12222211      4599


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +||.+.|.+.               .+.   ..++-..|++.+++++.|
T Consensus        99 ~vid~~g~~~---------------~~~---~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2          99 RVIMAGGGSE---------------TLS---QAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             EEEECSSCTT---------------HHH---HHHHHEEEEEEEEECCCC
T ss_pred             eEEEccCCHH---------------HHH---HHHHHHhcCCEEEEEeec
Confidence            9999987542               111   123334588888887643

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.71  E-value=0.13  Score=43.89  Aligned_cols=33  Identities=21%  Similarity=0.347  Sum_probs=29.2

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      -|.|+||++.+|..++..|+..|.  +|++.|+++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~   35 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH--QIVGIDIRD   35 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCh
Confidence            457779999999999999999997  899999875

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.52  E-value=0.12  Score=40.25  Aligned_cols=25  Identities=20%  Similarity=0.357  Sum_probs=21.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPL   53 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~   53 (358)
                      |||+|.|++|.||+.++..+...++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999877776664

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.47  E-value=0.25  Score=39.49  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             CCceEEEEc-CCCChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcC--CCCccEEEEecCCccccccCCCCEE
Q 018314           27 PDRKVAVLG-AAGGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHI--NTRSEVAGYMGNDQLGQALEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiG-A~G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~--~~~~~v~~~~~~~d~~~al~~aDiV  100 (358)
                      +..||+++| +..+|-.+++..+...|.  ++++.-...   ...........  .....+..+   +|+++++++||+|
T Consensus         2 ~g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~---~d~~~ai~~aDvi   76 (161)
T d1vlva2           2 KGVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKETDGSVSFT---SNLEEALAGADVV   76 (161)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEE---SCHHHHHTTCSEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhhcCCceEEE---ecHHHhhhhhhhe
Confidence            457999999 324678888887777776  898887654   12221111111  012356653   5778999999999


Q ss_pred             EEcC
Q 018314          101 IIPA  104 (358)
Q Consensus       101 Ii~a  104 (358)
                      ....
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            9864

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=90.39  E-value=0.73  Score=39.09  Aligned_cols=114  Identities=13%  Similarity=0.110  Sum_probs=65.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-----cHHHHHHhhcCCCCccEEEEec-CCcc---c---ccc-
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-----TPGVAADVGHINTRSEVAGYMG-NDQL---G---QAL-   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-----~~~~~~dl~~~~~~~~v~~~~~-~~d~---~---~al-   94 (358)
                      ..-|.|+||+|.+|..++..|+..+. ..|+|+.++.     ......++....  .++..... -+|.   .   +.+ 
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~   85 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIG   85 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhcccc
Confidence            34789999999999999999999884 3688886542     233344554332  24444321 1111   0   111 


Q ss_pred             --CCCCEEEEcCCCCCCC---CCCHH---HHHHHHHHHHHHHHHHHHhhCCCeEEEEee
Q 018314           95 --EDSDVVIIPAGVPRKP---GMTRD---DLFNINAGIVKDLCSAIAKYCPNAIVNMIS  145 (358)
Q Consensus        95 --~~aDiVIi~ag~~~~~---g~~r~---~~~~~N~~i~~~i~~~i~~~~p~a~iiv~t  145 (358)
                        .+.|.||+.+|.....   .++..   ..+.-|+.-...+.+.+... +.+.+++++
T Consensus        86 ~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          86 DDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence              2578889988865422   22322   23455666666666655544 344555554

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.37  E-value=0.2  Score=37.71  Aligned_cols=35  Identities=14%  Similarity=0.211  Sum_probs=30.4

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++++|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            4579999998 9999999999998876  899999864

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=90.26  E-value=0.33  Score=39.28  Aligned_cols=96  Identities=13%  Similarity=0.146  Sum_probs=57.6

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccc---cc------cCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLG---QA------LED   96 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~---~a------l~~   96 (358)
                      +..+|.|+|| |.||...+..+...+. ..|+..|.++ ....+.++.-   . .+-.+ ..++..   +.      =.+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~~~~~a~~lGa---~-~vi~~-~~~~~~~~~~~i~~~~~~~g  100 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPNRLKLAEEIGA---D-LTLNR-RETSVEERRKAIMDITHGRG  100 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHHHHHHHHHTTC---S-EEEET-TTSCHHHHHHHHHHHTTTSC
T ss_pred             CCCEEEEECC-Cccchhheeccccccc-ccccccccccccccccccccc---e-EEEec-cccchHHHHHHHHHhhCCCC
Confidence            4568999998 9999988888887774 4799999876 3344444431   1 11111 112211   11      136


Q ss_pred             CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           97 SDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        97 aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +|+||.+.|.+.               .   +-..++-..|++.++++..+
T Consensus       101 ~Dvvid~vG~~~---------------~---~~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         101 ADFILEATGDSR---------------A---LLEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             EEEEEECSSCTT---------------H---HHHHHHHEEEEEEEEECCCC
T ss_pred             ceEEeecCCchh---------------H---HHHHHHHhcCCCEEEEEeec
Confidence            899999987542               1   11223334578888877543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=89.97  E-value=0.073  Score=47.75  Aligned_cols=107  Identities=17%  Similarity=0.271  Sum_probs=59.7

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh----CCCC-----cEEEEEecCCc-HHHHHHhhcCC--CCccEEEEecCCcccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL----NPLV-----SRLALYDIANT-PGVAADVGHIN--TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~----~~~~-----~ei~L~D~~~~-~~~~~dl~~~~--~~~~v~~~~~~~d~~~al   94 (358)
                      ...||.|.|| |.-|..++.+|+.    .++-     ..|+++|.+.. .....|+....  +-....   ...++.+.+
T Consensus        24 ~d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r~d~~~~k~~~a~~~~---~~~~l~~~i   99 (308)
T d1o0sa1          24 SQEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNRKEMNPRHVQFAKDMP---ETTSILEVI   99 (308)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTCSSCCGGGTTTCBSSC---CCCCHHHHH
T ss_pred             HHcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCCcccCHHHHHHHHhcc---cCCcHHHHH
Confidence            3459999998 9999988776543    3431     35999998641 10111232211  100100   112333444


Q ss_pred             CCC--CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcc
Q 018314           95 EDS--DVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNST  151 (358)
Q Consensus        95 ~~a--DiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~  151 (358)
                      +.+  +++|-+.+.+   |.           +.+++.+.|.+++++.+|+-.+||..-.
T Consensus       100 ~~~kptvliG~s~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPtp~~  144 (308)
T d1o0sa1         100 RAARPGALIGASTVR---GA-----------FNEEVIRAMAEINERPIIFALSNPTSKA  144 (308)
T ss_dssp             HHHCCSEEEECSSCT---TC-----------SCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             hccccccEEeccccc---CC-----------CCHHHHHHHHhhCCCcEEEEccCCCCCC
Confidence            333  4556555443   22           1134456677789999999999998643

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.92  E-value=0.14  Score=39.51  Aligned_cols=41  Identities=17%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..+....+.+++|||| |.+|.-+|..+...+.  ++.+++..+
T Consensus        19 ~l~l~~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          19 ALALKEVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             HTTCCCCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             hhCccccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            4455667789999998 9999999999988886  999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.91  E-value=0.097  Score=40.13  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=34.7

Q ss_pred             ccCCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           21 YSSESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        21 ~~~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +...+..|.+++|||| |.+|.-+|..+...|.  ++.++...+
T Consensus        18 ~l~l~~~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          18 ALALSEIPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             HTTCSSCCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             hhCccccCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            4555667789999998 9999999999998886  999998755

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.81  E-value=0.29  Score=39.56  Aligned_cols=92  Identities=23%  Similarity=0.192  Sum_probs=61.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAGV  106 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag~  106 (358)
                      ..++++|+|- |.+|..+|..+...+-  .+..+++++..+... ..|..   ++.      .++++++.+|++|.+-|.
T Consensus        22 aGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alqA-~mdGf---~v~------~~~~a~~~aDi~vTaTGn   88 (163)
T d1v8ba1          22 SGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQA-VMEGF---NVV------TLDEIVDKGDFFITCTGN   88 (163)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHH-HTTTC---EEC------CHHHHTTTCSEEEECCSS
T ss_pred             cCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHHH-HhcCC---ccC------chhHccccCcEEEEcCCC
Confidence            4569999998 9999999999987775  899999987443322 11211   222      246899999999998764


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          107 PRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       107 ~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +.--+                 .+.+++...++++.+++--.
T Consensus        89 ~~vI~-----------------~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          89 VDVIK-----------------LEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             SSSBC-----------------HHHHTTCCTTCEEEECSSTT
T ss_pred             Ccccc-----------------HHHHHHhhCCeEEEeccccc
Confidence            32101                 13344455677777766443

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.55  Score=38.27  Aligned_cols=71  Identities=13%  Similarity=0.231  Sum_probs=46.3

Q ss_pred             CCceEEEEcCCC--ChHHHHHHHHHhCCCCcEEEEEecCC---cHHH---HHHhhcCCCCccEEEEecCCccccccCCCC
Q 018314           27 PDRKVAVLGAAG--GIGQPLALLMKLNPLVSRLALYDIAN---TPGV---AADVGHINTRSEVAGYMGNDQLGQALEDSD   98 (358)
Q Consensus        27 ~~~KI~IiGA~G--~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~---~~dl~~~~~~~~v~~~~~~~d~~~al~~aD   98 (358)
                      ...||+++|= |  .|..+++..+..-|.  +|+++-..+   ....   +.+..... ...+..+   +|++++++++|
T Consensus         4 ~~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~~-g~~~~~~---~d~~~a~~~aD   76 (183)
T d1duvg2           4 NEMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQN-GGNITLT---EDVAKGVEGAD   76 (183)
T ss_dssp             GGCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHHT-TCEEEEE---SCHHHHHTTCS
T ss_pred             CCCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHhc-CCceEEE---echhhccccCC
Confidence            4579999994 4  577777777777776  899998754   1222   22222111 2345543   56789999999


Q ss_pred             EEEEcC
Q 018314           99 VVIIPA  104 (358)
Q Consensus        99 iVIi~a  104 (358)
                      +|..+.
T Consensus        77 vvyt~~   82 (183)
T d1duvg2          77 FIYTDV   82 (183)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            988864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.76  E-value=0.21  Score=39.34  Aligned_cols=38  Identities=16%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      ..+-+.++|.|||| |.+|..-+..|...|-  +|++++..
T Consensus         8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1           8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             EECCTTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             heeeCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            33456679999998 9999999999998885  89999753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.66  E-value=0.17  Score=38.48  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=30.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+|+|||| |.+|.-+|..|...+.  ++.|++..+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            458999998 9999999999998887  999999865

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.54  E-value=0.15  Score=41.41  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..-|+|||| |..|.+.|..|+..|.  +|.++|.++
T Consensus         5 ~yDviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~   38 (297)
T d2bcgg1           5 DYDVIVLGT-GITECILSGLLSVDGK--KVLHIDKQD   38 (297)
T ss_dssp             BCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             cCCEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCC
Confidence            346999997 9999999999999997  899999875

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.44  E-value=0.13  Score=43.12  Aligned_cols=102  Identities=20%  Similarity=0.287  Sum_probs=60.5

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC-CcEEEEEecCCcHHHHHHhhcCCCCccEEEE---------------------ecC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPL-VSRLALYDIANTPGVAADVGHINTRSEVAGY---------------------MGN   87 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~-~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~---------------------~~~   87 (358)
                      +|.|||- |..|..++..+...++ ..+++.+|.+.     .+|.....+.++...                     ...
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDA-----QALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBT-----GGGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcH-----HHHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            7889997 9999999999988774 34888888875     112221111111110                     001


Q ss_pred             CccccccCCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314           88 DQLGQALEDSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus        88 ~d~~~al~~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      +.+.+.++++|.||++||.-...|       ..=+|++.++++.   .. --.+-++|=|-
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake---~g-~lvvaivtlPF  126 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKE---MG-ILTVAVVTRPF  126 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHH---TT-CEEEEEEEECC
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHH---cC-CCEEEEEecch
Confidence            234567899999999997643222       2345666666654   32 12355566665

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.42  E-value=0.11  Score=45.89  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |.+|.|||| |-.|.++|..|++.+.  +|.++|.++
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~   34 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRN   34 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCC
Confidence            568999998 9999999999998876  899999876

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=89.31  E-value=0.46  Score=37.60  Aligned_cols=66  Identities=12%  Similarity=0.078  Sum_probs=41.9

Q ss_pred             CceEEEEcCCCC---hHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGG---IGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~---vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ..||+++|= +.   |..+++..+...+.  +++++-.++   ......  ...  ...+..+   +|+++++++||+|.
T Consensus         3 gl~i~~vGD-~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~--~~~--~~~~~~~---~d~~eai~~aDvvy   72 (153)
T d1pg5a2           3 GLVFALLGD-LKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEIL--DEL--NYPVKEV---ENPFEVINEVDVLY   72 (153)
T ss_dssp             TCEEEEEEC-CSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHH--TTC--CSCEEEE---SCGGGTGGGCSEEE
T ss_pred             CCEEEEECC-CCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhc--ccC--CCeEEEE---eCHHHHhhcCCeEE
Confidence            569999995 53   77888888777775  555554443   111111  111  2356553   56789999999887


Q ss_pred             Ec
Q 018314          102 IP  103 (358)
Q Consensus       102 i~  103 (358)
                      .+
T Consensus        73 ~~   74 (153)
T d1pg5a2          73 VT   74 (153)
T ss_dssp             EE
T ss_pred             Ee
Confidence            76

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=89.20  E-value=1  Score=34.80  Aligned_cols=116  Identities=13%  Similarity=0.076  Sum_probs=65.3

Q ss_pred             CceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ++.|+||||+   +..|..++..|...++  .+.++-.+.....   +.      ....+   .++.+.=...|+|++..
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~------g~~~~---~~l~~i~~~iD~v~v~~   78 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LF------GEEAV---ASLLDLKEPVDILDVFR   78 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ET------TEECB---SSGGGCCSCCSEEEECS
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---ee------ceecc---cchhhccCCCceEEEec
Confidence            4579999985   3577888888888888  7888876531000   11      12222   23333225679998873


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-c-cccHHHH
Q 018314          105 GVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-T-TLDVVRA  181 (358)
Q Consensus       105 g~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t-~lds~R~  181 (358)
                                      +.+.+.++.+++.+.+.+++++   +|-..-..+ .+..+.+|    -++|+= | ..+..||
T Consensus        79 ----------------p~~~v~~~v~~~~~~g~k~i~~---q~G~~~~e~-~~~a~~~G----i~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          79 ----------------PPSALMDHLPEVLALRPGLVWL---QSGIRHPEF-EKALKEAG----IPVVADRCLMVEHKRL  133 (136)
T ss_dssp             ----------------CHHHHTTTHHHHHHHCCSCEEE---CTTCCCHHH-HHHHHHTT----CCEEESCCHHHHHHHH
T ss_pred             ----------------cHHHHHHHHHHHHhhCCCeEEE---ecCccCHHH-HHHHHHcC----CEEEcCCccHHHHHHh
Confidence                            2344444444555566666544   232111222 23346677    478875 7 4555554

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=88.92  E-value=0.15  Score=43.77  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=29.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .-|+|||| |-+|.++|+.|+.++.  +|+|+|...
T Consensus         4 yDvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           4 FDVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            46999998 9999999999999987  899999753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.78  E-value=0.17  Score=42.51  Aligned_cols=34  Identities=32%  Similarity=0.556  Sum_probs=30.4

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +.+.|+||++++|..++..|+..|.  +|++.|+++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   35 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRR   35 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCc
Confidence            3677889999999999999999997  899999875

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.74  Score=44.01  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=30.2

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      .||+|+|+ |++|+.++-.|++.|+ +.|.|+|-+.
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            49999998 9999999999999985 6899999754

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=87.79  E-value=0.7  Score=36.56  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=43.0

Q ss_pred             CceEEEEcC--CCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcC
Q 018314           28 DRKVAVLGA--AGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPA  104 (358)
Q Consensus        28 ~~KI~IiGA--~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~a  104 (358)
                      ..||+++|=  .+.|..+++..+..-|.  ++++..+.+.       ....  ..+..+   .|+++++++||+|..+-
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~~-------~~~~--~~~~~~---~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSEW-------QDEE--NTFGTY---VSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCchh-------hccc--cceeEE---EechhccccCceeeeeE
Confidence            579999995  35688888888887776  7887776431       1001  123333   45678999999988753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=87.39  E-value=0.42  Score=38.42  Aligned_cols=98  Identities=19%  Similarity=0.282  Sum_probs=58.2

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccccc-----CCCC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL-----EDSD   98 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al-----~~aD   98 (358)
                      .++..+|.|+|+ |.+|...+..+...+. ..|+..|.++ ....+.++...    .+-.+ ..+|..+.+     .+.|
T Consensus        26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga~----~~i~~-~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGAT----HVINS-KTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTCS----EEEET-TTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCCe----EEEeC-CCcCHHHHHHHHcCCCCc
Confidence            345678999998 9999999888877664 3677788766 33444555311    11111 123333322     2489


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +||.+.|.+               +.++   ..++-..|.+.+++++.|
T Consensus        99 ~vid~~G~~---------------~~~~---~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          99 FALESTGSP---------------EILK---QGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEEECSCCH---------------HHHH---HHHHTEEEEEEEEECCCC
T ss_pred             EEEEcCCcH---------------HHHH---HHHhcccCceEEEEEeec
Confidence            999998642               1111   123334578888887654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.36  E-value=0.37  Score=36.07  Aligned_cols=41  Identities=12%  Similarity=0.095  Sum_probs=31.0

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhC-CCCcEEEEEecCC
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLN-PLVSRLALYDIAN   64 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~-~~~~ei~L~D~~~   64 (358)
                      ..+..|.||+|||| |.+|.-+|..+... ....+|.+++..+
T Consensus        13 ~l~~~p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          13 YLDEAPKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             TCSSCCSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CccccCCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence            44455679999998 99999998766543 3345999998754

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=87.28  E-value=0.12  Score=46.06  Aligned_cols=126  Identities=19%  Similarity=0.266  Sum_probs=68.3

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHh----CCC-----CcEEEEEecCC-cHHHHHHhhcCC--CCccEEEEecCCcccccc
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKL----NPL-----VSRLALYDIAN-TPGVAADVGHIN--TRSEVAGYMGNDQLGQAL   94 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~----~~~-----~~ei~L~D~~~-~~~~~~dl~~~~--~~~~v~~~~~~~d~~~al   94 (358)
                      +..||+|.|| |..|..++.++..    .+.     ...|+|+|... ......|+.+..  +....   ....++.+.+
T Consensus        24 ~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R~~l~~~k~~~a~~~---~~~~~l~~~i   99 (298)
T d1gq2a1          24 SDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGRASLTPEKEHFAHEH---CEMKNLEDIV   99 (298)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTCSSCCTTGGGGCBSC---CCCCCHHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCCcccCHHHHHHHHHh---hhhhhhHHHh
Confidence            3459999998 9999888776643    232     24799999865 111111232211  00000   0112233333


Q ss_pred             C--CCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEe
Q 018314           95 E--DSDVVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFG  172 (358)
Q Consensus        95 ~--~aDiVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG  172 (358)
                      +  +.+++|-+.+.+   |-       -    -+++.+.|.+++++.+|+-.+||..-.-....+.++.+.   .+-+|+
T Consensus       100 ~~vkptvliG~s~~~---g~-------f----t~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~---G~ai~A  162 (298)
T d1gq2a1         100 KDIKPTVLIGVAAIG---GA-------F----TQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTE---GRGIFA  162 (298)
T ss_dssp             HHHCCSEEEECSCCT---TC-------S----CHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTT---TCCEEE
T ss_pred             hccChheeEeccccc---Cc-------C----CHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcc---cceEEe
Confidence            3  356666665543   21       1    133445677789999999999997633222234455432   355666


Q ss_pred             e
Q 018314          173 V  173 (358)
Q Consensus       173 ~  173 (358)
                      .
T Consensus       163 s  163 (298)
T d1gq2a1         163 S  163 (298)
T ss_dssp             E
T ss_pred             e
Confidence            6

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.16  E-value=0.11  Score=42.49  Aligned_cols=36  Identities=14%  Similarity=0.293  Sum_probs=29.9

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +....+|+|||| |..|...|..++..+.  +++++|..
T Consensus         2 ~~~~~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           2 ETHNTRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             CcccceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            334579999998 9999999999998887  77888853

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=86.93  E-value=0.26  Score=43.59  Aligned_cols=35  Identities=20%  Similarity=0.161  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +...|+|||| |..|.++|..|.+.++  +++++|..+
T Consensus         6 ~~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           6 EEVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             SEEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            3458999998 9999999999999888  899999875

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.67  E-value=1.2  Score=36.01  Aligned_cols=77  Identities=18%  Similarity=0.218  Sum_probs=44.2

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHH--HHHHhh----cCCCCccEEE-----EecCCccccccCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPG--VAADVG----HINTRSEVAG-----YMGNDQLGQALED   96 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~--~~~dl~----~~~~~~~v~~-----~~~~~d~~~al~~   96 (358)
                      ++||+|.|. |.+|..++..+..++.+.-+.+.|+.+...  ......    +.. ...+..     .....++...+.+
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   79 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAAS-EEFIPRFEKEGFEVAGTLNDLLEK   79 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESS-GGGHHHHHHHTCCCSCBHHHHHTT
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeeccc-ccceeeecccCccccchhhhhhcc
Confidence            369999998 999999998888777544444556544221  111111    100 000000     0012344556789


Q ss_pred             CCEEEEcCCC
Q 018314           97 SDVVIIPAGV  106 (358)
Q Consensus        97 aDiVIi~ag~  106 (358)
                      +|+||.+.|.
T Consensus        80 vDvViEcTG~   89 (172)
T d2czca2          80 VDIIVDATPG   89 (172)
T ss_dssp             CSEEEECCST
T ss_pred             CCEEEECCCC
Confidence            9999998765

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.52  E-value=2.1  Score=32.71  Aligned_cols=85  Identities=20%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             CCceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEc
Q 018314           27 PDRKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIP  103 (358)
Q Consensus        27 ~~~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~  103 (358)
                      .++.|+||||+   +..|..+...|...+ ..+|+.+.....     ++.      .+..+   .++.+.=...|.++++
T Consensus         7 ~PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~-----~i~------G~~~y---~sl~dlp~~vDlvvi~   71 (129)
T d2csua1           7 NPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE-----EVQ------GVKAY---KSVKDIPDEIDLAIIV   71 (129)
T ss_dssp             SCSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS-----EET------TEECB---SSTTSCSSCCSEEEEC
T ss_pred             CCCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc-----ccC------CeEee---cchhhcCCCCceEEEe
Confidence            45689999997   778888877776544 458998876531     011      23332   2232222468999987


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEE
Q 018314          104 AGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVN  142 (358)
Q Consensus       104 ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~ii  142 (358)
                      .                ..+.+.++.+++.+.+-++.++
T Consensus        72 v----------------p~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          72 V----------------PKRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             S----------------CHHHHHHHHHHHHHHTCCEEEE
T ss_pred             c----------------ChHHhHHHHHHHHHcCCCEEEE
Confidence            4                2445555566666666555444

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.14  E-value=0.15  Score=39.32  Aligned_cols=37  Identities=16%  Similarity=0.310  Sum_probs=28.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ++.+|+|+|| |..|.+++..+....-..=+.++|.++
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~   38 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDP   38 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCT
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCch
Confidence            3569999998 999999987665444345678899775

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.97  E-value=0.77  Score=34.76  Aligned_cols=94  Identities=10%  Similarity=-0.018  Sum_probs=55.0

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcc----ccccCCCCEEEEcCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQL----GQALEDSDVVIIPAG  105 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~----~~al~~aDiVIi~ag  105 (358)
                      .|.|+|. |.+|..++..|...    +++++|.++.....  +..... .-+.+  +.+|.    ...+.+|+.+|++..
T Consensus         2 HivI~G~-g~~g~~l~~~L~~~----~i~vi~~d~~~~~~--~~~~~~-~~i~G--d~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRGS----EVFVLAEDENVRKK--VLRSGA-NFVHG--DPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCGG----GEEEEESCTTHHHH--HHHTTC-EEEES--CTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             EEEEECC-CHHHHHHHHHHcCC----CCEEEEcchHHHHH--HHhcCc-ccccc--ccCCHHHHHHhhhhcCcEEEEecc
Confidence            5889997 99999999887432    57888887733222  222221 01111  11221    135789999999752


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .           -..|+.+    +..+++.+|+..++.-+|--
T Consensus        72 ~-----------d~~n~~~----~~~~r~~~~~~~iia~~~~~   99 (129)
T d2fy8a1          72 S-----------DSETIHC----ILGIRKIDESVRIIAEAERY   99 (129)
T ss_dssp             S-----------HHHHHHH----HHHHHHHCSSSCEEEECSSG
T ss_pred             c-----------hhhhHHH----HHHHHHHCCCceEEEEEcCH
Confidence            1           1244443    44567889987666555543

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=85.80  E-value=1.5  Score=37.32  Aligned_cols=32  Identities=22%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..|+||++++|..++..|+..|.  +|++.|.+.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            34559989999999999999997  899888765

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=85.78  E-value=0.52  Score=37.26  Aligned_cols=36  Identities=19%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      ...+|+|||| |.+|..+|..|...+.-..|++.+..
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecCc
Confidence            4568999998 99999999999998865566666653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=85.77  E-value=0.3  Score=40.93  Aligned_cols=32  Identities=28%  Similarity=0.291  Sum_probs=29.4

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      -|.|||| |..|...|..|++.+.  +|+|+|...
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGN   35 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999997  899999876

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=85.45  E-value=0.96  Score=36.25  Aligned_cols=76  Identities=21%  Similarity=0.201  Sum_probs=47.3

Q ss_pred             CCCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcc-cccc-----CCC
Q 018314           25 SVPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL-GQAL-----EDS   97 (358)
Q Consensus        25 ~~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-~~al-----~~a   97 (358)
                      .++..+|.|+|+ |.+|...+..+...+. ..|+..|+++ ....+.++.-..   -+. +...++. .+..     .+.
T Consensus        25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~kl~~a~~lGa~~---~i~-~~~~d~~~~~~~~~~~~~G~   98 (174)
T d1p0fa2          25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDKFPKAIELGATE---CLN-PKDYDKPIYEVICEKTNGGV   98 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHTTCSE---EEC-GGGCSSCHHHHHHHHTTSCB
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHHHHHHHHcCCcE---EEc-CCCchhHHHHHHHHhcCCCC
Confidence            345678999997 9999998888877763 4899999987 344455443111   111 1111111 1111     479


Q ss_pred             CEEEEcCCC
Q 018314           98 DVVIIPAGV  106 (358)
Q Consensus        98 DiVIi~ag~  106 (358)
                      |+||.+.|.
T Consensus        99 d~vid~~g~  107 (174)
T d1p0fa2          99 DYAVECAGR  107 (174)
T ss_dssp             SEEEECSCC
T ss_pred             cEEEEcCCC
Confidence            999998764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.16  E-value=1  Score=35.57  Aligned_cols=98  Identities=15%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccccc------CCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aD   98 (358)
                      ++..+|.|+|++|.+|...+..+...+. .+|+..|.++ ....+.++.   ....+. . ...|..+.+      ++.|
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a~~~i~-~-~~~~~~~~~~~~~~~~~~d   99 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---ADYVIN-A-SMQDPLAEIRRITESKGVD   99 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---CSEEEE-T-TTSCHHHHHHHHTTTSCEE
T ss_pred             CCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---Cceeec-c-CCcCHHHHHHHHhhcccch
Confidence            4566899999779999888877776653 3899999876 233333332   111111 1 112222221      4689


Q ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCC
Q 018314           99 VVIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNP  147 (358)
Q Consensus        99 iVIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP  147 (358)
                      +||.+.|.+.               .+..   .++-..|++.+++++.+
T Consensus       100 ~vid~~g~~~---------------~~~~---a~~~l~~~G~iv~~G~~  130 (170)
T d1jvba2         100 AVIDLNNSEK---------------TLSV---YPKALAKQGKYVMVGLF  130 (170)
T ss_dssp             EEEESCCCHH---------------HHTT---GGGGEEEEEEEEECCSS
T ss_pred             hhhcccccch---------------HHHh---hhhhcccCCEEEEeccc
Confidence            9999876421               1111   13334588888888544

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.14  E-value=0.46  Score=38.11  Aligned_cols=96  Identities=20%  Similarity=0.226  Sum_probs=55.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +..+|.|.||+|.+|...+..+...+.  +++-.+.++ ....+.++.   .. .+..+....+....-+++|+|+-+.|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~lG---a~-~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLALG---AE-EAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHTT---CS-EEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhccccc--ccccccccccccccccccc---cc-eeeehhhhhhhhhccccccccccccc
Confidence            556899999889999999888888886  777777654 223333332   11 12211111111234578999998765


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      .      +    +          -..++-..|.+.++.+.+|.
T Consensus       101 ~------~----~----------~~~~~~l~~~G~~v~~G~~~  123 (171)
T d1iz0a2         101 K------E----V----------EESLGLLAHGGRLVYIGAAE  123 (171)
T ss_dssp             T------T----H----------HHHHTTEEEEEEEEEC----
T ss_pred             h------h----H----------HHHHHHHhcCCcEEEEeCCC
Confidence            1      1    1          12344456889988886653

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=85.10  E-value=0.49  Score=37.65  Aligned_cols=38  Identities=29%  Similarity=0.328  Sum_probs=28.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      +|++|+|+|++|+||.+...-+...+.--+|+.+-.+.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            36799999999999999887777765322666665544

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.08  E-value=0.82  Score=36.42  Aligned_cols=75  Identities=23%  Similarity=0.213  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccc------ccCCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQ------ALEDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~------al~~aD   98 (358)
                      ++...|.|+|| |.+|...+..++..+. .+|+..|.++ ....+.++....   .+.. ...++..+      .-.++|
T Consensus        27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~k~~~a~~~Ga~~---~i~~-~~~~~~~~~~~~~~~~~G~D  100 (176)
T d2jhfa2          27 TQGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKDKFAKAKEVGATE---CVNP-QDYKKPIQEVLTEMSNGGVD  100 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSE---EECG-GGCSSCHHHHHHHHTTSCBS
T ss_pred             CCCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHHHHHHHHHhCCee---EEec-CCchhHHHHHHHHHhcCCCC
Confidence            35678999998 8899998888887663 4899999877 333444333111   1111 01111111      114799


Q ss_pred             EEEEcCCC
Q 018314           99 VVIIPAGV  106 (358)
Q Consensus        99 iVIi~ag~  106 (358)
                      +||.+.|.
T Consensus       101 ~vid~~G~  108 (176)
T d2jhfa2         101 FSFEVIGR  108 (176)
T ss_dssp             EEEECSCC
T ss_pred             EEEecCCc
Confidence            99999864

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.80  E-value=0.46  Score=35.63  Aligned_cols=41  Identities=20%  Similarity=0.197  Sum_probs=30.6

Q ss_pred             CCCCCCceEEEEcCCCChHHHHHHHHHhCC-CCcEEEEEecCC
Q 018314           23 SESVPDRKVAVLGAAGGIGQPLALLMKLNP-LVSRLALYDIAN   64 (358)
Q Consensus        23 ~~~~~~~KI~IiGA~G~vG~~~a~~l~~~~-~~~ei~L~D~~~   64 (358)
                      ..+..+.+|+|||| |.+|.-+|..+...+ ...++.|++..+
T Consensus        15 ~l~~~p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          15 YLPEPPRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             TCSSCCSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CchhcCCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            34445679999998 999999997665433 334899998755

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.50  E-value=0.35  Score=41.79  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=28.2

Q ss_pred             EEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           31 VAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        31 I~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |+|||| |..|.+.|+.|+..|+  +|.++|..+
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799998 9999999999999997  899999754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.42  E-value=0.38  Score=37.69  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=25.6

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      .||+|||| |.+|..+|..|.. +.  +|.+++..
T Consensus         1 ~rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKE   31 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSS
T ss_pred             CeEEEECC-cHHHHHHHHHHHc-CC--CEEEEecc
Confidence            38999998 9999999988865 33  89999864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=84.24  E-value=1.3  Score=36.77  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.5

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      -+.++|+|-|. |+||+.++..|...|-  .|+.+|++.
T Consensus        25 L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~   60 (201)
T d1c1da1          25 LDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDT   60 (201)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCH
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchH
Confidence            35569999997 9999999999999885  899999875

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.02  E-value=1.2  Score=36.51  Aligned_cols=75  Identities=23%  Similarity=0.271  Sum_probs=45.8

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccccc------CCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aD   98 (358)
                      ++...|.|+|| |.+|...+..+...+ ...|+..|.++ ....+.++.-     ........+|+.+.+      .++|
T Consensus        24 ~~G~tVlV~Ga-G~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~~~Ga-----~~~~~~~~~~~~~~i~~~t~g~g~D   96 (195)
T d1kola2          24 GPGSTVYVAGA-GPVGLAAAASARLLG-AAVVIVGDLNPARLAHAKAQGF-----EIADLSLDTPLHEQIAALLGEPEVD   96 (195)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTTC-----EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhhc-ccceeeecccchhhHhhhhccc-----cEEEeCCCcCHHHHHHHHhCCCCcE
Confidence            35668999998 999988777776666 35899999876 2333343321     111111112222221      4799


Q ss_pred             EEEEcCCCC
Q 018314           99 VVIIPAGVP  107 (358)
Q Consensus        99 iVIi~ag~~  107 (358)
                      ++|.+.|.+
T Consensus        97 ~vid~vG~~  105 (195)
T d1kola2          97 CAVDAVGFE  105 (195)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECcccc
Confidence            999998854

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=83.82  E-value=3.9  Score=33.73  Aligned_cols=99  Identities=19%  Similarity=0.238  Sum_probs=54.0

Q ss_pred             EEEEcCCCChHHHH-----HHHHHhCCCCcEEEEEecCC-c---HHHHHHhhcCCCCccEEEEecCCcccc---------
Q 018314           31 VAVLGAAGGIGQPL-----ALLMKLNPLVSRLALYDIAN-T---PGVAADVGHINTRSEVAGYMGNDQLGQ---------   92 (358)
Q Consensus        31 I~IiGA~G~vG~~~-----a~~l~~~~~~~ei~L~D~~~-~---~~~~~dl~~~~~~~~v~~~~~~~d~~~---------   92 (358)
                      |.++|. .++|.+.     |..+...+.  .+.|+..+. .   ..+..-+.+.. ...+.......++.+         
T Consensus        13 i~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~l-~v~~~~~~~~~~~~~~~~~~~~~~   88 (207)
T d1ls1a2          13 WFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEKV-GVPVLEVMDGESPESIRRRVEEKA   88 (207)
T ss_dssp             EEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHHH-TCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHhc-CCccccccccchhhHHHHHHHHHH
Confidence            677898 7899765     344555554  788888876 1   11211122211 112332212233321         


Q ss_pred             ccCCCCEEEE-cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 018314           93 ALEDSDVVII-PAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMI  144 (358)
Q Consensus        93 al~~aDiVIi-~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~  144 (358)
                      ...++|+|++ |+|...           .|.+.+.++.+..+...|+-++++.
T Consensus        89 ~~~~~d~vlIDTaGr~~-----------~d~~~~~el~~~~~~~~~~~~llv~  130 (207)
T d1ls1a2          89 RLEARDLILVDTAGRLQ-----------IDEPLMGELARLKEVLGPDEVLLVL  130 (207)
T ss_dssp             HHHTCCEEEEECCCCSS-----------CCHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             hhccCcceeecccccch-----------hhhhhHHHHHHHHhhcCCceEEEEe
Confidence            2589999999 887543           3344455555555556787655544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.59  E-value=0.62  Score=36.28  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.8

Q ss_pred             eEEEEcCCCChHHHHHHHHHhCCC
Q 018314           30 KVAVLGAAGGIGQPLALLMKLNPL   53 (358)
Q Consensus        30 KI~IiGA~G~vG~~~a~~l~~~~~   53 (358)
                      ||+|+||+|.||+.++..+...+-
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~   24 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADD   24 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCC
Confidence            899999999999999888777653

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.30  E-value=7  Score=28.88  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             ceEEEEcCC---CChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           29 RKVAVLGAA---GGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        29 ~KI~IiGA~---G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      +.|+||||+   +..|..+...|...++  +|+.+..+..     ++.      .+..+   .++.+.=..-|++++.. 
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~-----~i~------G~~~y---~sl~~lp~~~D~vvi~v-   64 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD-----EIE------GLKCY---RSVRELPKDVDVIVFVV-   64 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS-----EET------TEECB---SSGGGSCTTCCEEEECS-
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc-----ccc------Ccccc---ccchhccccceEEEEEe-
Confidence            479999985   4678888889999998  8888875421     011      23332   23322224569888873 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV  173 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~  173 (358)
                                     ..+.+.++.+++.+.+++++++   +|-..-.. +.+..+..|    -+++|=
T Consensus        65 ---------------p~~~~~~~l~~~~~~g~k~v~~---~~g~~~~~-~~~~a~~~g----i~vigp  109 (116)
T d1y81a1          65 ---------------PPKVGLQVAKEAVEAGFKKLWF---QPGAESEE-IRRFLEKAG----VEYSFG  109 (116)
T ss_dssp             ---------------CHHHHHHHHHHHHHTTCCEEEE---CTTSCCHH-HHHHHHHHT----CEEECS
T ss_pred             ---------------CHHHHHHHHHHHHhcCCceEEe---ccchhhHH-HHHHHHHcC----CEEEcC
Confidence                           2344445555555667766433   34322222 223345555    356664

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.14  E-value=0.3  Score=39.44  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=28.8

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecC
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIA   63 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~   63 (358)
                      +..+|+|||+ |..|...|..++..+.  +++++|..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGM   37 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEee
Confidence            3458999998 9999999999998887  78888754

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=82.99  E-value=0.44  Score=40.29  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             ceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      ..|.|||| |..|...|+.|++.+.  +|.|+|..+
T Consensus         5 ~DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~   37 (253)
T d2gqfa1           5 SENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGK   37 (253)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CcEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            46999998 9999999999999987  899999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.73  E-value=0.85  Score=35.88  Aligned_cols=98  Identities=19%  Similarity=0.254  Sum_probs=58.6

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcccc----ccCCCCEE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQ----ALEDSDVV  100 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~----al~~aDiV  100 (358)
                      ++..+|.|+|+ |.+|...+..+...+.  +++.+|.++ ....+.++..   ..-+. + ..+|..+    ...+.|.+
T Consensus        26 ~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~Ga---~~~i~-~-~~~~~~~~~~~~~~g~~~~   97 (166)
T d1llua2          26 RPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLGA---SLTVN-A-RQEDPVEAIQRDIGGAHGV   97 (166)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEE-T-TTSCHHHHHHHHHSSEEEE
T ss_pred             CCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccCc---ccccc-c-cchhHHHHHHHhhcCCccc
Confidence            35668999997 9999999888888884  899999876 2334444431   11111 1 1122222    23456667


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCC
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVN  149 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d  149 (358)
                      |+..+.+            .      .+-..++-..|.+.+++++.|.+
T Consensus        98 i~~~~~~------------~------~~~~~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          98 LVTAVSN------------S------AFGQAIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             EECCSCH------------H------HHHHHHTTEEEEEEEEECCCCSS
T ss_pred             ccccccc------------h------HHHHHHHHhcCCcEEEEEEecCC
Confidence            7765421            1      12223444458899988887754

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=82.48  E-value=1.2  Score=38.33  Aligned_cols=117  Identities=22%  Similarity=0.239  Sum_probs=72.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEEEcCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVIIPAG  105 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVIi~ag  105 (358)
                      .+..||++||-     ......+...+.  ++..+|.++..+   |+          .   ..+-++.+..||+||+|+ 
T Consensus       120 ~~g~kV~vIG~-----~P~v~~l~~~~~--~~~VlE~~p~~g---d~----------p---~~~~~~lLp~aD~viiTG-  175 (251)
T d2h1qa1         120 VKGKKVGVVGH-----FPHLESLLEPIC--DLSILEWSPEEG---DY----------P---LPASEFILPECDYVYITC-  175 (251)
T ss_dssp             TTTSEEEEESC-----CTTHHHHHTTTS--EEEEEESSCCTT---CE----------E---GGGHHHHGGGCSEEEEET-
T ss_pred             cCCCEEEEEec-----chhHHHHHhcCC--cEEEEeCCCCCC---CC----------C---chHHHHhhhcCCEEEEEe-
Confidence            34679999997     344445555554  899999875211   10          0   122356799999999998 


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEee-ccccHHHHHHH
Q 018314          106 VPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGV-TTLDVVRAKTF  184 (358)
Q Consensus       106 ~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~-t~lds~R~~~~  184 (358)
                                      ..++-.-.+.|=++++++..+++.=|...+.+.+   ++ .|    -..+|- -..|..++.+.
T Consensus       176 ----------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~l---f~-~G----v~~lag~~v~d~~~~~~~  231 (251)
T d2h1qa1         176 ----------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPVL---FE-HG----LQELSGFMVKDNARAFRI  231 (251)
T ss_dssp             ----------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGG---GG-TT----CSEEEEEEESCHHHHHHH
T ss_pred             ----------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHHH---Hh-cC----CceEeEEEEeCHHHHHHH
Confidence                            3444444555666787764444555555555533   33 44    345554 57899899888


Q ss_pred             HHHHcC
Q 018314          185 YAGKAN  190 (358)
Q Consensus       185 la~~l~  190 (358)
                      +++--+
T Consensus       232 i~~Ggg  237 (251)
T d2h1qa1         232 VAGAEK  237 (251)
T ss_dssp             HTTSSC
T ss_pred             HHcCCC
Confidence            875544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=82.33  E-value=1  Score=35.76  Aligned_cols=96  Identities=20%  Similarity=0.202  Sum_probs=57.1

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCcccccc------CCCCE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDV   99 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDi   99 (358)
                      +..+|.|+||+|.+|...+..+...+.  +++-.|.++. ...+.++.   .. .+-.+ ..+|+.+.+      ++.|+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a~-~vi~~-~~~d~~~~v~~~t~g~g~d~  100 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---AW-QVINY-REEDLVERLKEITGGKKVRV  100 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---CS-EEEET-TTSCHHHHHHHHTTTCCEEE
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---Ce-EEEEC-CCCCHHHHHHHHhCCCCeEE
Confidence            455899999978899999888887776  8888887762 33333343   11 12111 123443333      45788


Q ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCC
Q 018314          100 VIIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPV  148 (358)
Q Consensus       100 VIi~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~  148 (358)
                      |+-+.|.+         .+          ...++-..|++.++++..+.
T Consensus       101 v~d~~g~~---------~~----------~~~~~~l~~~G~~v~~g~~~  130 (179)
T d1qora2         101 VYDSVGRD---------TW----------ERSLDCLQRRGLMVSFGNSS  130 (179)
T ss_dssp             EEECSCGG---------GH----------HHHHHTEEEEEEEEECCCTT
T ss_pred             EEeCccHH---------HH----------HHHHHHHhcCCeeeeccccc
Confidence            88876521         11          12233345788887776544

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=82.22  E-value=0.98  Score=35.83  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN   64 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~   64 (358)
                      |+||+|+|++|++|.+..--+...+.--+|+..--..
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            4589999999999999888777776322555555443

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=81.85  E-value=2.9  Score=32.84  Aligned_cols=117  Identities=18%  Similarity=0.203  Sum_probs=63.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCc-HHHHHHhhcCCCCccEEEEecCCccccc-----cCCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANT-PGVAADVGHINTRSEVAGYMGNDQLGQA-----LEDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~-~~~~~dl~~~~~~~~v~~~~~~~d~~~a-----l~~aDiV  100 (358)
                      +...|.|+|+ |.+|...+..+...+. ..++..|.++. ...+.++.   .. .+-.+ ..++.++.     =.+.|+|
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~k~~~~~~~g---a~-~~i~~-~~~~~~~~~~~~~~~g~d~v  104 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEEKLKLAERLG---AD-HVVDA-RRDPVKQVMELTRGRGVNVA  104 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHHHHHHHHHTT---CS-EEEET-TSCHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhHHHHHHhhcc---cc-eeecC-cccHHHHHHHhhCCCCceEE
Confidence            4568999997 9999998877766553 36888888752 22233332   11 11111 11111111     1468999


Q ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeeCCCCcchHHHHHHHHHhCCCCCCceEeec
Q 018314          101 IIPAGVPRKPGMTRDDLFNINAGIVKDLCSAIAKYCPNAIVNMISNPVNSTVPIAAEVFKKAGTYNEKKLFGVT  174 (358)
Q Consensus       101 Ii~ag~~~~~g~~r~~~~~~N~~i~~~i~~~i~~~~p~a~iiv~tNP~d~~t~~~~~~~~~sg~~~~~kviG~t  174 (358)
                      |.+.|.+            .+      +-..++-..|.+.+++++.|.+.-..... ++     +...+++|+.
T Consensus       105 id~~g~~------------~~------~~~a~~~l~~~G~iv~~G~~~~~~~~~~~-l~-----~k~~~i~Gs~  154 (172)
T d1h2ba2         105 MDFVGSQ------------AT------VDYTPYLLGRMGRLIIVGYGGELRFPTIR-VI-----SSEVSFEGSL  154 (172)
T ss_dssp             EESSCCH------------HH------HHHGGGGEEEEEEEEECCCSSCCCCCHHH-HH-----HTTCEEEECC
T ss_pred             EEecCcc------------hH------HHHHHHHHhCCCEEEEEeCcccccCCHHH-HH-----hCCcEEEEEE
Confidence            9998642            11      11223334578888888765443222211 12     2235888884

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=81.69  E-value=1.3  Score=37.29  Aligned_cols=70  Identities=13%  Similarity=0.078  Sum_probs=41.1

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCC---CcEEEEEecCC---cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPL---VSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~---~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ++||+|||- |+-|.+-|+.|...+.   ..--+.+-.++   ....+.  .+..........    +..+|.+.||+|.
T Consensus        44 ~KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~v~----~v~EAv~~ADiVm  116 (226)
T d1qmga2          44 IKQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGTLG----DMWETISGSDLVL  116 (226)
T ss_dssp             CSEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTCEE----EHHHHHHTCSEEE
T ss_pred             CCEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCccc----CHHHHHhhCCEEE
Confidence            368999998 9999999999988542   00123333333   223333  121111111121    1357999999999


Q ss_pred             EcC
Q 018314          102 IPA  104 (358)
Q Consensus       102 i~a  104 (358)
                      +..
T Consensus       117 iLl  119 (226)
T d1qmga2         117 LLI  119 (226)
T ss_dssp             ECS
T ss_pred             Eec
Confidence            984

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.56  E-value=1.1  Score=35.34  Aligned_cols=76  Identities=21%  Similarity=0.204  Sum_probs=45.4

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCccccc-----cCCCCE
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQLGQA-----LEDSDV   99 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~~~a-----l~~aDi   99 (358)
                      ++...|.|+|+ |.+|...+..+...+. ..|+..|.++ ....+.+|....   -+......++..+.     -.++|+
T Consensus        27 ~~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g~D~  101 (176)
T d2fzwa2          27 EPGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATE---CINPQDFSKPIQEVLIEMTDGGVDY  101 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred             CCCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCCCcE
Confidence            35568999998 8899888877777663 3778888776 344555554211   11110000111111     157999


Q ss_pred             EEEcCCC
Q 018314          100 VIIPAGV  106 (358)
Q Consensus       100 VIi~ag~  106 (358)
                      ||.+.|.
T Consensus       102 vid~~G~  108 (176)
T d2fzwa2         102 SFECIGN  108 (176)
T ss_dssp             EEECSCC
T ss_pred             eeecCCC
Confidence            9998764

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=81.54  E-value=1.8  Score=34.08  Aligned_cols=75  Identities=19%  Similarity=0.167  Sum_probs=45.2

Q ss_pred             CCCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCC-cHHHHHHhhcCCCCccEEEEecCCcc-cc---c--cCCCC
Q 018314           26 VPDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIAN-TPGVAADVGHINTRSEVAGYMGNDQL-GQ---A--LEDSD   98 (358)
Q Consensus        26 ~~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~-~~~~~~dl~~~~~~~~v~~~~~~~d~-~~---a--l~~aD   98 (358)
                      ++..+|.|+|+ |.+|...+..++..+ ..+|+..|.++ ....+.++.-..   -+. +....+. .+   .  =.++|
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~~GAd~---~in-~~~~~~~~~~~~~~~~~~G~d  100 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKVFGATD---FVN-PNDHSEPISQVLSKMTNGGVD  100 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHHTTCCE---EEC-GGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHh-hchheeecchHHHHHHHHHcCCcE---EEc-CCCcchhHHHHHHhhccCCcc
Confidence            45568999998 888888777777655 34799999877 344455554111   111 1111111 11   1  14799


Q ss_pred             EEEEcCCC
Q 018314           99 VVIIPAGV  106 (358)
Q Consensus        99 iVIi~ag~  106 (358)
                      +|+.+.|.
T Consensus       101 ~vid~~G~  108 (175)
T d1cdoa2         101 FSLECVGN  108 (175)
T ss_dssp             EEEECSCC
T ss_pred             eeeeecCC
Confidence            99999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=81.42  E-value=1.6  Score=35.10  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEE-EEecCCcHHHHHHhh-cCC----CCc--------cEEEEecCCccccc
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLA-LYDIANTPGVAADVG-HIN----TRS--------EVAGYMGNDQLGQA   93 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~-L~D~~~~~~~~~dl~-~~~----~~~--------~v~~~~~~~d~~~a   93 (358)
                      |.||+|-|- |.+|..+...+..++.. +++ +-|+.+......-+. +..    ...        .+..   ..+....
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v---~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEV---AGTVDDM   75 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCC---CEEHHHH
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCccc---CCChhHh
Confidence            569999997 99999999888777743 444 445443221111111 100    000        1111   1233456


Q ss_pred             cCCCCEEEEcCCC
Q 018314           94 LEDSDVVIIPAGV  106 (358)
Q Consensus        94 l~~aDiVIi~ag~  106 (358)
                      +.++|+||.+-|.
T Consensus        76 ~~~vDvViEcTG~   88 (171)
T d1cf2o1          76 LDEADIVIDCTPE   88 (171)
T ss_dssp             HHTCSEEEECCST
T ss_pred             hcCCCEEEEccCC
Confidence            7899999998764

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=81.29  E-value=1.4  Score=34.56  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=46.5

Q ss_pred             CCceEEEEcCC--CChHHHHHHHHHhCCCCcEEEEEecCC---cHHHHHHhhcCCCCccEEEEecCCccccccCCCCEEE
Q 018314           27 PDRKVAVLGAA--GGIGQPLALLMKLNPLVSRLALYDIAN---TPGVAADVGHINTRSEVAGYMGNDQLGQALEDSDVVI  101 (358)
Q Consensus        27 ~~~KI~IiGA~--G~vG~~~a~~l~~~~~~~ei~L~D~~~---~~~~~~dl~~~~~~~~v~~~~~~~d~~~al~~aDiVI  101 (358)
                      ...||+++|=.  +.|..+++..+...+.  +++++-...   .......+....  ..+..+   .|++++++++|+|.
T Consensus         3 ~gl~i~~vGD~~~srV~~Sli~~~~~~g~--~~~~~~P~~~~~~~~~~~~~~~~~--~~~~~~---~d~~~av~~aDvvy   75 (157)
T d1ml4a2           3 DGLKIGLLGDLKYGRTVHSLAEALTFYDV--ELYLISPELLRMPRHIVEELREKG--MKVVET---TTLEDVIGKLDVLY   75 (157)
T ss_dssp             SSEEEEEESCTTTCHHHHHHHHHGGGSCE--EEEEECCGGGCCCHHHHHHHHHTT--CCEEEE---SCTHHHHTTCSEEE
T ss_pred             CCCEEEEEcCCccChHHHHHHHHHHhcCC--cEEEEccchhhcchHHHHHHHhhc--ccceee---cCHHHhhccCcEEE
Confidence            35799999952  4677788877777665  888887654   222222232222  245443   57789999999887


Q ss_pred             EcC
Q 018314          102 IPA  104 (358)
Q Consensus       102 i~a  104 (358)
                      .+.
T Consensus        76 ~~~   78 (157)
T d1ml4a2          76 VTR   78 (157)
T ss_dssp             ECC
T ss_pred             eec
Confidence            763

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.03  E-value=0.7  Score=39.19  Aligned_cols=162  Identities=17%  Similarity=0.129  Sum_probs=84.3

Q ss_pred             CceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEe-cCCcc---c-------ccc--
Q 018314           28 DRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYM-GNDQL---G-------QAL--   94 (358)
Q Consensus        28 ~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~-~~~d~---~-------~al--   94 (358)
                      ++.|.|+||++++|..++..|+..+....|++.++++....  ++.... ..++.... +-+|.   +       +.+  
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~--~l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~   79 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT--ELKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVGS   79 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH--HHHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHH--HHHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence            35788999999999999999999885447888887652211  232221 12333332 11111   1       111  


Q ss_pred             CCCCEEEEcCCCCCC--C--CCCHH---HHHHHH----HHHHHHHHHHHHhhC----------CCeEEEEeeCCCCcchH
Q 018314           95 EDSDVVIIPAGVPRK--P--GMTRD---DLFNIN----AGIVKDLCSAIAKYC----------PNAIVNMISNPVNSTVP  153 (358)
Q Consensus        95 ~~aDiVIi~ag~~~~--~--g~~r~---~~~~~N----~~i~~~i~~~i~~~~----------p~a~iiv~tNP~d~~t~  153 (358)
                      .+-|++|..||....  +  ..+..   ..+..|    +.+.+.+.+.|++..          ..+.+++++.....++.
T Consensus        80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~  159 (250)
T d1yo6a1          80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD  159 (250)
T ss_dssp             GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred             CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccC
Confidence            237999999996332  1  22322   234444    555677777776643          23555555544332221


Q ss_pred             HHHHHHHHhCCCCCCce--EeeccccHHHHHHHHHHHcCCCCCCCceEEE
Q 018314          154 IAAEVFKKAGTYNEKKL--FGVTTLDVVRAKTFYAGKANVNVAEVNVPVV  201 (358)
Q Consensus       154 ~~~~~~~~sg~~~~~kv--iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  201 (358)
                      .      .++ .+....  ++.+...-..|-+.+|+.+  .+..|++..+
T Consensus       160 ~------~~~-~~~~~~~aY~aSKaal~~l~~~la~el--~~~gI~v~~i  200 (250)
T d1yo6a1         160 N------TSG-SAQFPVLAYRMSKAAINMFGRTLAVDL--KDDNVLVVNF  200 (250)
T ss_dssp             C------CST-TSSSCBHHHHHHHHHHHHHHHHHHHHT--GGGTCEEEEE
T ss_pred             C------ccc-ccchhHHHHHHHHHHHHHHHHHHHHHh--cccCeEEEEE
Confidence            0      011 111111  2222222345567777776  3556666555

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.74  E-value=0.57  Score=40.81  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             ceEEEEcCCCChHHHHHHHHHh-----CCCCcEEEEEecCC
Q 018314           29 RKVAVLGAAGGIGQPLALLMKL-----NPLVSRLALYDIAN   64 (358)
Q Consensus        29 ~KI~IiGA~G~vG~~~a~~l~~-----~~~~~ei~L~D~~~   64 (358)
                      .-|.|||| |-+|.++|..|++     .++  +++++|..+
T Consensus         8 yDV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            46999998 9999999999974     466  899999754

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.17  E-value=1.2  Score=35.50  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=44.2

Q ss_pred             CCceEEEEcCCCChHHHHHHHHHhCCCCcEEEEEecCCcHHHHHHhhcCCCCccEEEEecCCcccccc------CCCCEE
Q 018314           27 PDRKVAVLGAAGGIGQPLALLMKLNPLVSRLALYDIANTPGVAADVGHINTRSEVAGYMGNDQLGQAL------EDSDVV  100 (358)
Q Consensus        27 ~~~KI~IiGA~G~vG~~~a~~l~~~~~~~ei~L~D~~~~~~~~~dl~~~~~~~~v~~~~~~~d~~~al------~~aDiV  100 (358)
                      +..+|.|+||+|.||...+..+...+.  +++..+.++.  ....+...... .+-.+ ...|+.+.+      ++.|+|
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~--~~~~l~~~Ga~-~vi~~-~~~~~~~~v~~~t~~~g~d~v   98 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDA--KREMLSRLGVE-YVGDS-RSVDFADEILELTDGYGVDVV   98 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHH--HHHHHHTTCCS-EEEET-TCSTHHHHHHHHTTTCCEEEE
T ss_pred             CCCEEEEECCCCCcccccchhhccccc--cceeeecccc--ccccccccccc-ccccC-CccCHHHHHHHHhCCCCEEEE
Confidence            456899999889999998888877775  6666665432  22222332221 22211 123444443      579999


Q ss_pred             EEcCC
Q 018314          101 IIPAG  105 (358)
Q Consensus       101 Ii~ag  105 (358)
                      +-+.|
T Consensus        99 ~d~~g  103 (183)
T d1pqwa_          99 LNSLA  103 (183)
T ss_dssp             EECCC
T ss_pred             Eeccc
Confidence            99875