Citrus Sinensis ID: 018331
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | 2.2.26 [Sep-21-2011] | |||||||
| Q42536 | 405 | Protochlorophyllide reduc | yes | no | 0.974 | 0.861 | 0.863 | 0.0 | |
| Q41249 | 398 | Protochlorophyllide reduc | N/A | no | 0.972 | 0.874 | 0.888 | 0.0 | |
| Q9SDT1 | 398 | Protochlorophyllide reduc | N/A | no | 0.966 | 0.869 | 0.885 | 1e-178 | |
| P21218 | 401 | Protochlorophyllide reduc | no | no | 0.994 | 0.887 | 0.854 | 1e-176 | |
| Q01289 | 399 | Protochlorophyllide reduc | N/A | no | 0.972 | 0.872 | 0.873 | 1e-173 | |
| Q42850 | 395 | Protochlorophyllide reduc | N/A | no | 0.946 | 0.858 | 0.817 | 1e-170 | |
| Q8W3D9 | 402 | Protochlorophyllide reduc | yes | no | 0.972 | 0.865 | 0.796 | 1e-168 | |
| O48741 | 401 | Protochlorophyllide reduc | no | no | 0.941 | 0.840 | 0.837 | 1e-167 | |
| O80333 | 458 | Protochlorophyllide reduc | N/A | no | 0.927 | 0.724 | 0.759 | 1e-156 | |
| P13653 | 388 | Protochlorophyllide reduc | N/A | no | 0.958 | 0.884 | 0.790 | 1e-156 |
| >sp|Q42536|PORA_ARATH Protochlorophyllide reductase A, chloroplastic OS=Arabidopsis thaliana GN=PORA PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/351 (86%), Positives = 326/351 (92%), Gaps = 2/351 (0%)
Query: 10 QREFSQRN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
+RE S RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAE
Sbjct: 55 KREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAE 114
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVL
Sbjct: 115 TGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVL 174
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187
VCNAAVY PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSIT
Sbjct: 175 VCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSIT 234
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEF
Sbjct: 235 GNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEF 294
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQ
Sbjct: 295 HRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQ 354
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 355 VVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). PORA may also function as a photoprotectant during the transitory stage from dark to light. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 3 |
| >sp|Q41249|PORA_CUCSA Protochlorophyllide reductase, chloroplastic OS=Cucumis sativus GN=PORA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 635 bits (1638), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/349 (88%), Positives = 333/349 (95%), Gaps = 1/349 (0%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+RE +Q+ G +RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETG
Sbjct: 51 KRELNQQIGAIRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWH+IMACRDFLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVC
Sbjct: 111 KWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+
Sbjct: 231 TNTLAGNVPPKANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHK 289
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVV
Sbjct: 290 RYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVV 349
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
S+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 350 SEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q9SDT1|POR_DAUCA Protochlorophyllide reductase, chloroplastic OS=Daucus carota GN=POR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 625 bits (1611), Expect = e-178, Method: Compositional matrix adjust.
Identities = 308/348 (88%), Positives = 331/348 (95%), Gaps = 2/348 (0%)
Query: 11 REFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGK 70
R+ SQ G +R+Q +AT +P+V+ ++ +GKKTLRKGSVIITGASSGLGLATAKALAETGK
Sbjct: 53 RQISQ-TGAIRSQAVAT-TPSVNRATGEGKKTLRKGSVIITGASSGLGLATAKALAETGK 110
Query: 71 WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 130
WH+IMACRDFLKAERAAKSAGM KENYTIMHLDLASLDSVRQFV+TFRRS RPLDVLVCN
Sbjct: 111 WHVIMACRDFLKAERAAKSAGMPKENYTIMHLDLASLDSVRQFVETFRRSERPLDVLVCN 170
Query: 131 AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
AAVY PTAKEPT+TA+GFELSVGTNHLGHFLLSRLLLDDL +SDYPSKRLIIVGSITGNT
Sbjct: 171 AAVYFPTAKEPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSITGNT 230
Query: 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR 250
NTLAGNVPPKANLGDLRG AGGLNG+NSS+MIDG +FDGAKAYKDSKVCNMLTMQEFHRR
Sbjct: 231 NTLAGNVPPKANLGDLRGLAGGLNGMNSSAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRR 290
Query: 251 FHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVS 310
+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE E+GKRLAQVVS
Sbjct: 291 YHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEAESGKRLAQVVS 350
Query: 311 DPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
+PSLTKSGVYWSWNKDSASFENQLS+EASDVEKARKVWE+SEKLVGLA
Sbjct: 351 EPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEKLVGLA 398
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Daucus carota (taxid: 4039) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P21218|PORB_ARATH Protochlorophyllide reductase B, chloroplastic OS=Arabidopsis thaliana GN=PORB PE=1 SV=3 | Back alignment and function description |
|---|
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/357 (85%), Positives = 326/357 (91%), Gaps = 1/357 (0%)
Query: 2 HNIIEFTLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLAT 61
H +RE S RN +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLAT
Sbjct: 46 HGSSSLRFKREQSLRNLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLAT 104
Query: 62 AKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121
AKALAETGKW++IMACRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+
Sbjct: 105 AKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTE 164
Query: 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLI 181
PLDVLVCNAAVY PTAKEPT++AEGFELSV TNHLGHFLL+RLLLDDLK+SDYPSKRLI
Sbjct: 165 TPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLI 224
Query: 182 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNM 241
IVGSITGNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNM
Sbjct: 225 IVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNM 284
Query: 242 LTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEA 301
LTMQEFHRRFHEETG+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+
Sbjct: 285 LTMQEFHRRFHEETGVTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETES 344
Query: 302 GKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
GKRLAQVVSDPSLTKSGVYWSWN SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct: 345 GKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q01289|POR_PEA Protochlorophyllide reductase, chloroplastic OS=Pisum sativum GN=3PCR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 608 bits (1569), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/348 (87%), Positives = 327/348 (93%)
Query: 11 REFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGK 70
+E Q+ G VRA+T A A+PAV+ SS +GKKTLRKG+V+ITGASSGLGLATAKALAE+GK
Sbjct: 52 KELRQKVGAVRAETAAPATPAVNKSSSEGKKTLRKGNVVITGASSGLGLATAKALAESGK 111
Query: 71 WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 130
WH+IMACRD+LKA RAAKSAG+AKENYTIMHLDLASLDSVRQFVD FRRS PLDVL+ N
Sbjct: 112 WHVIMACRDYLKAARAAKSAGLAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLINN 171
Query: 131 AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
AAVY PTAKEP+FTA+GFE+SVGTNHLGHFLLSRLLL+DLK+SDYPSKRLIIVGSITGNT
Sbjct: 172 AAVYFPTAKEPSFTADGFEISVGTNHLGHFLLSRLLLEDLKKSDYPSKRLIIVGSITGNT 231
Query: 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR 250
NTLAGNVPPKANLGDLRG AGGL GLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHRR
Sbjct: 232 NTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR 291
Query: 251 FHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVS 310
+HEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE+E+GKRLAQVVS
Sbjct: 292 YHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEEESGKRLAQVVS 351
Query: 311 DPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
DPSLTKSGVYWSWN SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 352 DPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEKLVGLA 399
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q42850|PORB_HORVU Protochlorophyllide reductase B, chloroplastic OS=Hordeum vulgare GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1540), Expect = e-170, Method: Compositional matrix adjust.
Identities = 277/339 (81%), Positives = 309/339 (91%)
Query: 20 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79
+RAQ A ++P +SP GKKT+R G+ IITGASSGLGLATAKALAE+GKWH+IMACRD
Sbjct: 57 IRAQAAAVSAPTATPASPAGKKTVRTGNAIITGASSGLGLATAKALAESGKWHVIMACRD 116
Query: 80 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 139
+LK RAA++AGM K +YTI+HLDLASLDSVRQFV R+ P+DV+VCNAAVY PTAK
Sbjct: 117 YLKTARAARAAGMPKGSYTIVHLDLASLDSVRQFVKNVRQLDMPIDVVVCNAAVYQPTAK 176
Query: 140 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199
EP+FTA+GFE+SVG NHLGHFLL+R LL+DLK SDYPSKRLIIVGSITGNTNTLAGNVPP
Sbjct: 177 EPSFTADGFEMSVGVNHLGHFLLARELLEDLKASDYPSKRLIIVGSITGNTNTLAGNVPP 236
Query: 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 259
KANLGDLRG A GLNG+ S++MIDG +FDGAKAYKDSKVCNMLTMQEFHRR+HEETG+ F
Sbjct: 237 KANLGDLRGLAAGLNGVGSAAMIDGAEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGVTF 296
Query: 260 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 319
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVS+PSLTKSGV
Sbjct: 297 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSEPSLTKSGV 356
Query: 320 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
YWSWNK+SASFENQLS+EASD EKARKVWE+SEKLVGLA
Sbjct: 357 YWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 395
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Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|Q8W3D9|PORB_ORYSJ Protochlorophyllide reductase B, chloroplastic OS=Oryza sativa subsp. japonica GN=PORB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 278/349 (79%), Positives = 313/349 (89%), Gaps = 1/349 (0%)
Query: 11 REFSQRNGVVRAQ-TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+ S + +RAQ + A +SP V +SP GK+TLRKG+ +ITGASSGLGLATAKALAETG
Sbjct: 50 KRVSTSSVAIRAQASAAVSSPTVTPASPSGKQTLRKGTAVITGASSGLGLATAKALAETG 109
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
+WH++M CRDFLKA RAAK+AGM K +YTI+HLDLASLDSVRQFV RR P+DV+VC
Sbjct: 110 RWHVVMGCRDFLKASRAAKAAGMEKGSYTIVHLDLASLDSVRQFVANVRRLEMPVDVVVC 169
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVY PTAK+P+FTA+GFE+SVG NHLGHFLL+R LL DL SDYPSKRLIIVGSITGN
Sbjct: 170 NAAVYQPTAKQPSFTADGFEMSVGVNHLGHFLLARELLADLTSSDYPSKRLIIVGSITGN 229
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG A GL+G++SS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHR
Sbjct: 230 TNTLAGNVPPKANLGDLRGLASGLDGVSSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHR 289
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
R+H ETG+ FASLYPGCIATTGLFREH+PLFRLLFPPFQKYITKGYVSE+EAGKRLAQVV
Sbjct: 290 RYHGETGVTFASLYPGCIATTGLFREHVPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVV 349
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
SDPSLTKSGVYWSWN +SASFENQLS+EASD EKA+KVWE+SEKLVGLA
Sbjct: 350 SDPSLTKSGVYWSWNNNSASFENQLSEEASDPEKAKKVWELSEKLVGLA 398
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|O48741|PORC_ARATH Protochlorophyllide reductase C, chloroplastic OS=Arabidopsis thaliana GN=PORC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 284/339 (83%), Positives = 319/339 (94%), Gaps = 2/339 (0%)
Query: 20 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79
+RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IMACR+
Sbjct: 65 IRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRN 123
Query: 80 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 139
FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY PTAK
Sbjct: 124 FLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAK 183
Query: 140 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199
EP+FTAEGFE+SVGTNHLGHFLLSRLLLDDLK+SDYPSKR+IIVGSITGNTNTLAGNVPP
Sbjct: 184 EPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAGNVPP 243
Query: 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 259
KANLGDLRG A GLNG N SSMIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEETG+ F
Sbjct: 244 KANLGDLRGLASGLNGQN-SSMIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGVTF 302
Query: 260 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 319
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL KSGV
Sbjct: 303 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGV 362
Query: 320 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
YWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct: 363 YWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|O80333|POR_MARPA Protochlorophyllide reductase, chloroplastic OS=Marchantia paleacea GN=PORA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 552 bits (1422), Expect = e-156, Method: Compositional matrix adjust.
Identities = 252/332 (75%), Positives = 293/332 (88%)
Query: 26 ATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 85
A +PA ++ P KKT K + IITGASSGLGLATAKALA+TG+WH+IMACRDFLKAER
Sbjct: 126 AVTAPAETMNKPSSKKTATKSTCIITGASSGLGLATAKALADTGEWHVIMACRDFLKAER 185
Query: 86 AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 145
AA+S G+ K++YT++H DLAS DSVR FVD FRR+ R LDVLVCNAAVY PT KEP F+A
Sbjct: 186 AARSVGIPKDSYTVIHCDLASFDSVRAFVDNFRRTERQLDVLVCNAAVYFPTDKEPKFSA 245
Query: 146 EGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205
EGFELSVGTNH+GHFLL+RLL++DL+++ KR+IIVGSITGN+NT+AGNVPPKANLG
Sbjct: 246 EGFELSVGTNHMGHFLLARLLMEDLQKAKDSLKRMIIVGSITGNSNTVAGNVPPKANLGH 305
Query: 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 265
LRG AGGLNG+NSSSMIDGG+FDGAKAYKDSKVCNM TMQEFHRR+H ETGI F+SLYPG
Sbjct: 306 LRGLAGGLNGVNSSSMIDGGEFDGAKAYKDSKVCNMFTMQEFHRRYHAETGITFSSLYPG 365
Query: 266 CIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325
CIA TGLFR H+ LFR LFPPFQKYITKGYVSE+EAGKR+AQVVSDP L+KSGVYWSWNK
Sbjct: 366 CIAETGLFRNHVTLFRTLFPPFQKYITKGYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNK 425
Query: 326 DSASFENQLSQEASDVEKARKVWEISEKLVGL 357
DS SFEN+LS+EAS+ EKA+++WE+SE+L GL
Sbjct: 426 DSGSFENELSEEASNPEKAKRLWELSERLSGL 457
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Marchantia paleacea (taxid: 56867) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
| >sp|P13653|PORA_HORVU Protochlorophyllide reductase A, chloroplastic OS=Hordeum vulgare GN=PORA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1416), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/344 (79%), Positives = 309/344 (89%), Gaps = 1/344 (0%)
Query: 16 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 75
R V A + T SP SSP GKKTLR+G V+ITGASSGLGLA AKALAETGKWH++M
Sbjct: 45 RTQVATAPSPVTTSPGSTASSPSGKKTLRQGVVVITGASSGLGLAAAKALAETGKWHVVM 104
Query: 76 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135
ACRDFLKA +AAK+AGMA +YT+MHLDLASLDSVRQFVD FRR+ PLDVLVCNAA+Y
Sbjct: 105 ACRDFLKASKAAKAAGMADGSYTVMHLDLASLDSVRQFVDAFRRAEMPLDVLVCNAAIYR 164
Query: 136 PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195
PTA+ PTFTA+G E+SVG NHLGHFLL+RLL++DL++SDYPS+R++IVGSITGN+NTLAG
Sbjct: 165 PTARTPTFTADGHEMSVGVNHLGHFLLARLLMEDLQKSDYPSRRMVIVGSITGNSNTLAG 224
Query: 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEE 254
NVPPKA+LGDLRG AGGL+G + S+MIDG + FDGAKAYKDSKVCNMLTMQEFHRR+HEE
Sbjct: 225 NVPPKASLGDLRGLAGGLSGASGSAMIDGDESFDGAKAYKDSKVCNMLTMQEFHRRYHEE 284
Query: 255 TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314
TGI F+SLYPGCIATTGLFREHIPLFR LFPPFQK++TKG+VSE E+GKRLAQVV++P L
Sbjct: 285 TGITFSSLYPGCIATTGLFREHIPLFRTLFPPFQKFVTKGFVSEAESGKRLAQVVAEPVL 344
Query: 315 TKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
TKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 345 TKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEKLVGLA 388
|
Phototransformation of protochlorophyllide (Pchlide) to chlorophyllide (Chlide). Hordeum vulgare (taxid: 4513) EC: 1 EC: . EC: 3 EC: . EC: 1 EC: . EC: 3 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| 255587362 | 396 | short-chain dehydrogenase, putative [Ric | 0.997 | 0.901 | 0.904 | 0.0 | |
| 224117218 | 399 | predicted protein [Populus trichocarpa] | 0.974 | 0.874 | 0.893 | 0.0 | |
| 356544016 | 399 | PREDICTED: protochlorophyllide reductase | 0.974 | 0.874 | 0.911 | 0.0 | |
| 449446951 | 399 | PREDICTED: protochlorophyllide reductase | 0.974 | 0.874 | 0.899 | 0.0 | |
| 224128374 | 399 | predicted protein [Populus trichocarpa] | 0.974 | 0.874 | 0.902 | 0.0 | |
| 15239574 | 405 | protochlorophyllide reductase A [Arabido | 0.974 | 0.861 | 0.863 | 1e-180 | |
| 968975 | 405 | NADPH:protochlorophyllide oxidoreductase | 0.974 | 0.861 | 0.863 | 1e-180 | |
| 356517168 | 399 | PREDICTED: protochlorophyllide reductase | 0.980 | 0.879 | 0.883 | 1e-180 | |
| 297796287 | 404 | hypothetical protein ARALYDRAFT_495501 [ | 0.974 | 0.863 | 0.863 | 1e-180 | |
| 10720220 | 398 | RecName: Full=Protochlorophyllide reduct | 0.972 | 0.874 | 0.888 | 1e-180 |
| >gi|255587362|ref|XP_002534245.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223525646|gb|EEF28135.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1702), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/357 (90%), Positives = 341/357 (95%)
Query: 2 HNIIEFTLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLAT 61
H+ F +RE +QR G VRAQTMATASPAV+ ++P+GKKTLRKGSVI+TGASSGLGLAT
Sbjct: 40 HSSSAFRFKREPNQRVGAVRAQTMATASPAVNRAAPEGKKTLRKGSVIVTGASSGLGLAT 99
Query: 62 AKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121
AKALAETGKWHIIMACRDFLK ERAAKSAG++KENYTIMHLDLASLDSVRQFVD F+RSG
Sbjct: 100 AKALAETGKWHIIMACRDFLKTERAAKSAGISKENYTIMHLDLASLDSVRQFVDNFKRSG 159
Query: 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLI 181
RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLI
Sbjct: 160 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLQKSDYPSKRLI 219
Query: 182 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNM 241
IVGSITGNTNTLAGNVPPKANLGD+RG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNM
Sbjct: 220 IVGSITGNTNTLAGNVPPKANLGDMRGLAGGLNGLNSSAMIDGGNFDGAKAYKDSKVCNM 279
Query: 242 LTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEA 301
L MQEFHRRFHEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEA
Sbjct: 280 LIMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEA 339
Query: 302 GKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
GKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASD +KARKVWEISEKLVGLA
Sbjct: 340 GKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDADKARKVWEISEKLVGLA 396
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224117218|ref|XP_002317511.1| predicted protein [Populus trichocarpa] gi|222860576|gb|EEE98123.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/349 (89%), Positives = 329/349 (94%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+REF+Q G VRAQTM A+PA+D +S + KKTL +G+ I+TGASSGLGLATAKALAETG
Sbjct: 51 KREFNQGVGAVRAQTMVAATPALDRASSESKKTLGQGTCIVTGASSGLGLATAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWHIIMACR+FLKAERAAKSAG+AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC
Sbjct: 111 KWHIIMACRNFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEP FTAEGFELSVGTNHLGHFLLSRLLL+D+K SDYPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPAFTAEGFELSVGTNHLGHFLLSRLLLEDMKISDYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG +GGLNGLN S+MIDGG FDGAKAYKDSKVCNMLTMQEFHR
Sbjct: 231 TNTLAGNVPPKANLGDLRGLSGGLNGLNRSAMIDGGVFDGAKAYKDSKVCNMLTMQEFHR 290
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
R HEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE EAGKRLAQVV
Sbjct: 291 RLHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEHEAGKRLAQVV 350
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
SDPSLTKSG YWSWNK SASF+NQLSQEASD EKARKVWEISEKLVGLA
Sbjct: 351 SDPSLTKSGAYWSWNKHSASFQNQLSQEASDAEKARKVWEISEKLVGLA 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544016|ref|XP_003540452.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/349 (91%), Positives = 332/349 (95%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+REF Q+ VRA+T+ATASPAV S+P+GKKTLRKGSV+ITGASSGLGLATAKALAETG
Sbjct: 51 KREFEQKLCAVRAETVATASPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWH+IMACRD+LKA RAAKSAGMAKENYTIMHLDLASLDSVRQFVD FRRS PLDVLVC
Sbjct: 111 KWHVIMACRDYLKAARAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSEMPLDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+DL++SDYPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLEKSDYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG GGLNGLNSS+MIDGGDFDGAKAYKDSKVCNMLTMQEFHR
Sbjct: 231 TNTLAGNVPPKANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 290
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
RFHEETGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSEDEAGKRLAQVV
Sbjct: 291 RFHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVV 350
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
SDPSLTKSGVYWSWNK SASFENQLSQEASD EKARK+WEISEKLVG A
Sbjct: 351 SDPSLTKSGVYWSWNKASASFENQLSQEASDTEKARKIWEISEKLVGFA 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449446951|ref|XP_004141233.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] gi|449530269|ref|XP_004172118.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 314/349 (89%), Positives = 336/349 (96%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+RE +Q+ G +RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETG
Sbjct: 51 KRELNQQIGAIRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWH+IMACRDFLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVC
Sbjct: 111 KWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +SDYPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSDYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG AGGLNGLNSSSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+
Sbjct: 231 TNTLAGNVPPKANLGDLRGLAGGLNGLNSSSMIDGGEFDGAKAYKDSKVCNMLTMQEFHK 290
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+ITKGYVSEDEAGKRLAQVV
Sbjct: 291 RYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITKGYVSEDEAGKRLAQVV 350
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
S+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 351 SEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 399
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128374|ref|XP_002329146.1| predicted protein [Populus trichocarpa] gi|222869815|gb|EEF06946.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/349 (90%), Positives = 335/349 (95%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+REF+QR VRAQ+MATA+PAV+ +S GKKTLR+G I+TGASSGLGLA AKALAETG
Sbjct: 51 KREFNQRVRTVRAQSMATATPAVNRASSDGKKTLRQGCCIVTGASSGLGLAAAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWH+IMACRDFLKAERAAKSAG+AKEN TIMHLDLASLDSVRQFVDTF+RSGR LDVLVC
Sbjct: 111 KWHVIMACRDFLKAERAAKSAGIAKENCTIMHLDLASLDSVRQFVDTFKRSGRALDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+D+K+SDYPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDMKKSDYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGG+FDGAKAYKDSKVCNMLTMQEFHR
Sbjct: 231 TNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHR 290
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
RFHEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSE++AGKRLAQVV
Sbjct: 291 RFHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEEDAGKRLAQVV 350
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
SDPSLTKSGVYWSWNKDSASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 351 SDPSLTKSGVYWSWNKDSASFENQLSQEASDEEKARKVWEVSEKLVGLA 399
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239574|ref|NP_200230.1| protochlorophyllide reductase A [Arabidopsis thaliana] gi|26454645|sp|Q42536.2|PORA_ARATH RecName: Full=Protochlorophyllide reductase A, chloroplastic; Short=PCR A; AltName: Full=NADPH-protochlorophyllide oxidoreductase A; Short=POR A; Flags: Precursor gi|10178168|dbj|BAB11581.1| NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28392935|gb|AAO41903.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|28827538|gb|AAO50613.1| putative NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|332009081|gb|AED96464.1| protochlorophyllide reductase A [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/351 (86%), Positives = 326/351 (92%), Gaps = 2/351 (0%)
Query: 10 QREFSQRN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
+RE S RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAE
Sbjct: 55 KREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAE 114
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVL
Sbjct: 115 TGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVL 174
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187
VCNAAVY PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSIT
Sbjct: 175 VCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSIT 234
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEF
Sbjct: 235 GNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEF 294
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQ
Sbjct: 295 HRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQ 354
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 355 VVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|968975|gb|AAC49043.1| NADPH:protochlorophyllide oxidoreductase A [Arabidopsis thaliana] gi|1583455|prf||2120441A protochlorophyllide oxidoreductase | Back alignment and taxonomy information |
|---|
Score = 638 bits (1645), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/351 (86%), Positives = 326/351 (92%), Gaps = 2/351 (0%)
Query: 10 QREFSQRN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
+RE S RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAE
Sbjct: 55 KREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAE 114
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVL
Sbjct: 115 TGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVL 174
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187
VCNAAVY PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSIT
Sbjct: 175 VCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSIT 234
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEF
Sbjct: 235 GNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEF 294
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQ
Sbjct: 295 HRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQ 354
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 355 VVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356517168|ref|XP_003527261.1| PREDICTED: protochlorophyllide reductase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/351 (88%), Positives = 333/351 (94%)
Query: 8 TLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
T +REF Q+ G +R Q++AT +P V +SP+GKKTLRKGSVIITGASSGLGLATAKALAE
Sbjct: 49 TCKREFQQKFGPLRVQSVATTTPGVTKASPEGKKTLRKGSVIITGASSGLGLATAKALAE 108
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAAKSAG+AKENYTIMHLDLASLDSVRQFVD FR+SGRPLDVL
Sbjct: 109 TGKWHVIMACRDFLKAERAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRQSGRPLDVL 168
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187
VCNAAVYLPTA+EPT+TA+GFELSVGTNHLGHFLLSRLLLDDL +SDYPSKRLIIVGSIT
Sbjct: 169 VCNAAVYLPTAREPTYTADGFELSVGTNHLGHFLLSRLLLDDLNKSDYPSKRLIIVGSIT 228
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGD+RG AGGLNGLN+S+MIDGG FDGAKAYKDSKVCNMLTMQEF
Sbjct: 229 GNTNTLAGNVPPKANLGDMRGLAGGLNGLNTSAMIDGGSFDGAKAYKDSKVCNMLTMQEF 288
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRR+H+ETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG+VSEDE+GKRLAQ
Sbjct: 289 HRRYHDETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGFVSEDESGKRLAQ 348
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VVSDPSLTKSGVYWSWN SASFENQLSQEASD +KARKVWEISEKL GLA
Sbjct: 349 VVSDPSLTKSGVYWSWNAASASFENQLSQEASDADKARKVWEISEKLTGLA 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297796287|ref|XP_002866028.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] gi|297311863|gb|EFH42287.1| hypothetical protein ARALYDRAFT_495501 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 636 bits (1640), Expect = e-180, Method: Compositional matrix adjust.
Identities = 303/351 (86%), Positives = 325/351 (92%), Gaps = 2/351 (0%)
Query: 10 QREFSQRN--GVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
+RE S RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAE
Sbjct: 54 KREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAE 113
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVL
Sbjct: 114 TGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVL 173
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187
VCNAAVY PTA +PTFTAEGFELSVG NHLGHFLLSRLL+DDLK SDYPSKRLIIVGSIT
Sbjct: 174 VCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSIT 233
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEF
Sbjct: 234 GNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEF 293
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQ
Sbjct: 294 HRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSETEAGKRLAQ 353
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VV DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 354 VVGDPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 404
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|10720220|sp|Q41249.1|PORA_CUCSA RecName: Full=Protochlorophyllide reductase, chloroplastic; Short=PCR; AltName: Full=NADPH-protochlorophyllide oxidoreductase; Short=POR; Flags: Precursor gi|2244614|dbj|BAA21089.1| NADPH-protochlorophyllide oxidoreductase [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1638), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/349 (88%), Positives = 333/349 (95%), Gaps = 1/349 (0%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+RE +Q+ G +RAQT AT SPAV+ ++P GKKTLRKGSV+ITGASSGLGLATAKALAETG
Sbjct: 51 KRELNQQIGAIRAQTTATESPAVNKATPDGKKTLRKGSVVITGASSGLGLATAKALAETG 110
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129
KWH+IMACRDFLKAERAAKSAG+ KENYT+MHLDLASLDSVRQFVD FR+SGRPLDVLVC
Sbjct: 111 KWHVIMACRDFLKAERAAKSAGITKENYTVMHLDLASLDSVRQFVDNFRQSGRPLDVLVC 170
Query: 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL+DL +S YPSKRLIIVGSITGN
Sbjct: 171 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLEDLNKSSYPSKRLIIVGSITGN 230
Query: 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249
TNTLAGNVPPKANLGDLRG AGGLNGL SSMIDGG+FDGAKAYKDSKVCNMLTMQEFH+
Sbjct: 231 TNTLAGNVPPKANLGDLRGLAGGLNGLK-SSMIDGGEFDGAKAYKDSKVCNMLTMQEFHK 289
Query: 250 RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309
R+HEETGI FASLYPGCIATTGLFREHIPLFR+LFPPFQK+IT+GYVSEDEAGKRLAQVV
Sbjct: 290 RYHEETGITFASLYPGCIATTGLFREHIPLFRILFPPFQKFITQGYVSEDEAGKRLAQVV 349
Query: 310 SDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
S+PSLTKSGVYWSWNK+SASFENQLSQEASD EKARKVWE+SEKLVGLA
Sbjct: 350 SEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEKLVGLA 398
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 358 | ||||||
| TAIR|locus:2124044 | 401 | PORB "protochlorophyllide oxid | 0.994 | 0.887 | 0.829 | 4.3e-157 | |
| TAIR|locus:2153438 | 405 | PORA "protochlorophyllide oxid | 0.974 | 0.861 | 0.837 | 3.8e-156 | |
| TAIR|locus:2020738 | 401 | POR C "protochlorophyllide oxi | 0.941 | 0.840 | 0.808 | 1.6e-148 | |
| ZFIN|ZDB-GENE-030131-6605 | 334 | rdh14b "retinol dehydrogenase | 0.379 | 0.407 | 0.439 | 6.1e-31 | |
| ZFIN|ZDB-GENE-041010-124 | 286 | rdh14a "retinol dehydrogenase | 0.379 | 0.475 | 0.405 | 1.1e-29 | |
| ZFIN|ZDB-GENE-050522-387 | 298 | zgc:112332 "zgc:112332" [Danio | 0.382 | 0.459 | 0.367 | 1.5e-29 | |
| ZFIN|ZDB-GENE-040801-48 | 291 | rdh12l "retinol dehydrogenase | 0.391 | 0.481 | 0.373 | 9.2e-28 | |
| ZFIN|ZDB-GENE-030131-4716 | 331 | wu:fd55e03 "wu:fd55e03" [Danio | 0.396 | 0.429 | 0.394 | 1e-27 | |
| ZFIN|ZDB-GENE-070912-611 | 292 | si:dkey-94e7.2 "si:dkey-94e7.2 | 0.391 | 0.479 | 0.4 | 6e-27 | |
| ZFIN|ZDB-GENE-060825-39 | 336 | zgc:153441 "zgc:153441" [Danio | 0.377 | 0.401 | 0.419 | 1.3e-26 |
| TAIR|locus:2124044 PORB "protochlorophyllide oxidoreductase B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1531 (544.0 bits), Expect = 4.3e-157, P = 4.3e-157
Identities = 296/357 (82%), Positives = 316/357 (88%)
Query: 2 HNIIEFTLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLAT 61
H +RE S RN +RAQT AT+SP V S GKKTLRKG+V++TGASSGLGLAT
Sbjct: 46 HGSSSLRFKREQSLRNLAIRAQTAATSSPTV-TKSVDGKKTLRKGNVVVTGASSGLGLAT 104
Query: 62 AKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121
AKALAETGKW++IMACRDFLKAERAAKS GM K++YT+MHLDLASLDSVRQFVD FRR+
Sbjct: 105 AKALAETGKWNVIMACRDFLKAERAAKSVGMPKDSYTVMHLDLASLDSVRQFVDNFRRTE 164
Query: 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLI 181
PLDVLVCNAAVY PTAKEPT++AEGFELSV TNHLGHF K+SDYPSKRLI
Sbjct: 165 TPLDVLVCNAAVYFPTAKEPTYSAEGFELSVATNHLGHFLLARLLLDDLKKSDYPSKRLI 224
Query: 182 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNM 241
IVGSITGNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDFDGAKAYKDSKVCNM
Sbjct: 225 IVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNM 284
Query: 242 LTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEA 301
LTMQEFHRRFHEETG+ FASLYPGCIA+TGLFREHIPLFR LFPPFQKYITKGYVSE E+
Sbjct: 285 LTMQEFHRRFHEETGVTFASLYPGCIASTGLFREHIPLFRALFPPFQKYITKGYVSETES 344
Query: 302 GKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
GKRLAQVVSDPSLTKSGVYWSWN SASFENQLS+EASDVEKARKVWEISEKLVGLA
Sbjct: 345 GKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEKLVGLA 401
|
|
| TAIR|locus:2153438 PORA "protochlorophyllide oxidoreductase A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1522 (540.8 bits), Expect = 3.8e-156, P = 3.8e-156
Identities = 294/351 (83%), Positives = 316/351 (90%)
Query: 10 QREFSQRNG--VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAE 67
+RE S RN ++RAQ +AT++P+V SS KKTLRKG+V++TGASSGLGLATAKALAE
Sbjct: 55 KREQSLRNNKAIIRAQAIATSTPSVTKSSLDRKKTLRKGNVVVTGASSGLGLATAKALAE 114
Query: 68 TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127
TGKWH+IMACRDFLKAERAA+SAGM K++YT+MHLDLASLDSVRQFVD FRR+ PLDVL
Sbjct: 115 TGKWHVIMACRDFLKAERAAQSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRAEMPLDVL 174
Query: 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSIT 187
VCNAAVY PTA +PTFTAEGFELSVG NHLGHF K SDYPSKRLIIVGSIT
Sbjct: 175 VCNAAVYQPTANQPTFTAEGFELSVGINHLGHFLLSRLLIDDLKNSDYPSKRLIIVGSIT 234
Query: 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF 247
GNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGGDF GAKAYKDSKVCNMLTMQEF
Sbjct: 235 GNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGDFVGAKAYKDSKVCNMLTMQEF 294
Query: 248 HRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQ 307
HRRFHE+TGI FASLYPGCIATTGLFREHIPLFR LFPPFQKYITKGYVSE EAGKRLAQ
Sbjct: 295 HRRFHEDTGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSESEAGKRLAQ 354
Query: 308 VVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
VV+DPSLTKSGVYWSWNK SASFENQLSQEASDVEKAR+VWE+SEKLVGLA
Sbjct: 355 VVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEKLVGLA 405
|
|
| TAIR|locus:2020738 POR C "protochlorophyllide oxidoreductase C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1450 (515.5 bits), Expect = 1.6e-148, P = 1.6e-148
Identities = 274/339 (80%), Positives = 309/339 (91%)
Query: 20 VRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79
+RAQT+ TA+P + +SP+ KKT RKG+ +ITGASSGLGLATAKALA+TGKWH+IMACR+
Sbjct: 65 IRAQTV-TATPPANEASPEQKKTERKGTAVITGASSGLGLATAKALADTGKWHVIMACRN 123
Query: 80 FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK 139
FLKAE+AA+S GM+KE+YT+MHLDLASL+SV+QFV+ FRR+ +PLDVLVCNAAVY PTAK
Sbjct: 124 FLKAEKAARSVGMSKEDYTVMHLDLASLESVKQFVENFRRTEQPLDVLVCNAAVYQPTAK 183
Query: 140 EPTFTAEGFELSVGTNHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199
EP+FTAEGFE+SVGTNHLGHF K+SDYPSKR+IIVGSITGNTNTLAGNVPP
Sbjct: 184 EPSFTAEGFEISVGTNHLGHFLLSRLLLDDLKKSDYPSKRMIIVGSITGNTNTLAGNVPP 243
Query: 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 259
KANLGDLRG A GLNG NSS MIDGG+FDGAKAYKDSKVCNMLTMQE HRR+HEETG+ F
Sbjct: 244 KANLGDLRGLASGLNGQNSS-MIDGGEFDGAKAYKDSKVCNMLTMQELHRRYHEETGVTF 302
Query: 260 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV 319
ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSE+EAGKRLAQVVSDPSL KSGV
Sbjct: 303 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEEEAGKRLAQVVSDPSLGKSGV 362
Query: 320 YWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358
YWSWN +S+SFENQLS+EASD EKA+K+WE+SEKLVGLA
Sbjct: 363 YWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEKLVGLA 401
|
|
| ZFIN|ZDB-GENE-030131-6605 rdh14b "retinol dehydrogenase 14b (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 6.1e-31, Sum P(2) = 6.1e-31
Identities = 65/148 (43%), Positives = 88/148 (59%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 98
+R +VI+TGA+ G+G ATA L + + +IMACRD +AE AA+ AG ++
Sbjct: 50 MRGKTVIVTGANCGIGKATAAELLKL-QARVIMACRDRQRAEDAARDIQNQAGASQGEIV 108
Query: 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 157
I HLDLASL SVR+F + R +DVL+ NA +Y P +K T EGFE+ +G NHL
Sbjct: 109 IKHLDLASLQSVRRFCEEVIREEPRIDVLINNAGLYQCPYSK----TEEGFEMQLGVNHL 164
Query: 158 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 185
GHF KQS PS R+++V S
Sbjct: 165 GHFLLTNLLLDLLKQSS-PS-RVVVVSS 190
|
|
| ZFIN|ZDB-GENE-041010-124 rdh14a "retinol dehydrogenase 14a (all-trans/9-cis/11-cis)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 211 (79.3 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
Identities = 60/148 (40%), Positives = 81/148 (54%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYT 98
LR +VI+TGA+SG+G AT L + +IMACRD +AE+AA+ AG +
Sbjct: 2 LRGKTVIVTGANSGIGKATTTELLRR-QARVIMACRDRERAEKAAQEIKQEAGPEQGELV 60
Query: 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHL 157
I LDLASL SVR F + + +D+L+ NA +Y P K + +GFE+ NHL
Sbjct: 61 IKLLDLASLKSVRVFCEGIIKEEPRIDILINNAGIYQCPYTK----SEDGFEMQFAVNHL 116
Query: 158 GHFXXXXXXXXXXKQSDYPSKRLIIVGS 185
GHF K S PS R+I+V S
Sbjct: 117 GHFLLTNLLLDLLKCSA-PS-RIIVVSS 142
|
|
| ZFIN|ZDB-GENE-050522-387 zgc:112332 "zgc:112332" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 224 (83.9 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
Identities = 54/147 (36%), Positives = 83/147 (56%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIM 100
L + +VIITGA++G+G TA+ LA G ++MACRD KAE A + +N +
Sbjct: 18 LDEKTVIITGANTGIGKETARDLARRGA-RVVMACRDLEKAEAARRELMDNSGNQNIVVK 76
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGH 159
LDLA S++ F + + + +++L+ NA + + P +K TA+GFE+ G NHLGH
Sbjct: 77 KLDLADTKSIKAFAELINKEEKQVNILINNAGIMMCPYSK----TADGFEMQFGVNHLGH 132
Query: 160 FXXXXXXXXXXKQSDYPSKRLIIVGSI 186
F K+S PS R++ V S+
Sbjct: 133 FLLIYLLLDLLKKST-PS-RIVNVASV 157
|
|
| ZFIN|ZDB-GENE-040801-48 rdh12l "retinol dehydrogenase 12, like" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 213 (80.0 bits), Expect = 9.2e-28, Sum P(2) = 9.2e-28
Identities = 56/150 (37%), Positives = 82/150 (54%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDL 104
+V+ITGA++G+G TA LA+ G IIMACRD KAE A K ++ I LDL
Sbjct: 15 TVLITGANTGIGKETAIDLAKRGA-RIIMACRDMEKAEAALKEVKDSSGNQDVFISSLDL 73
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXX 163
+ S+R F + + + +++L+ NA V + P K TA+GFE+ +G NH+GHF
Sbjct: 74 SDSKSIRGFAEKINKEEKQVNILINNAGVMVCPYGK----TADGFEMQIGVNHMGHFLLT 129
Query: 164 XXXXXXXKQSDYPSKRLIIVGSITGNTNTL 193
K+S P+ R+I V S T+
Sbjct: 130 YLLLDLIKRSA-PA-RIINVSSTAHQWGTI 157
|
|
| ZFIN|ZDB-GENE-030131-4716 wu:fd55e03 "wu:fd55e03" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 1.0e-27, Sum P(2) = 1.0e-27
Identities = 60/152 (39%), Positives = 87/152 (57%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKE 95
+ K L +V+ITG ++G+G TA +A+ G +I+ACRD +A +AA+ E
Sbjct: 46 RSKARLNGKTVLITGGNTGIGKETAVDMAKRGA-RVILACRDMSRAHKAAEEIRKRSGNE 104
Query: 96 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-TAEGFELSVGT 154
N T+ LDLASL SVR V ++S + LD+L+ NA V + P + T EGFE+ +G
Sbjct: 105 NVTVKMLDLASLQSVRDLVKDVQQSEQRLDILINNAGVMMC----PKWHTDEGFEMQIGV 160
Query: 155 NHLGHFXXXXXXXXXXKQSDYPSKRLIIVGSI 186
NHLGHF K+S PS R++ V S+
Sbjct: 161 NHLGHFLLTNLLLDMLKKSA-PS-RIVNVASV 190
|
|
| ZFIN|ZDB-GENE-070912-611 si:dkey-94e7.2 "si:dkey-94e7.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 231 (86.4 bits), Expect = 6.0e-27, Sum P(2) = 6.0e-27
Identities = 60/150 (40%), Positives = 84/150 (56%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDL 104
++IITGA++G+G T K LA+ G IIMACRD KAERA + +N I LDL
Sbjct: 18 TIIITGANTGIGKETTKDLAKRGP-RIIMACRDVEKAERAQREIMEESGNQNIVIRKLDL 76
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFXXX 163
+ S+R+F + R L +L+ NA V + P +K TA+GFE+ G NHLGHF
Sbjct: 77 SDTRSIREFAEVINSEERSLHLLINNAGVMMCPYSK----TADGFEMQFGVNHLGHFLLT 132
Query: 164 XXXXXXXKQSDYPSKRLIIVGSITGNTNTL 193
K+S PS R+I + S+ + T+
Sbjct: 133 FLLIDLLKRSA-PS-RIINLSSMAHSWGTI 160
|
|
| ZFIN|ZDB-GENE-060825-39 zgc:153441 "zgc:153441" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 1.3e-26, Sum P(2) = 1.3e-26
Identities = 60/143 (41%), Positives = 83/143 (58%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDL 104
+V+ITGA++G+G TA+ +A G ++MACRD KAE+AA + N I+ HL+L
Sbjct: 54 TVVITGANTGIGKETARDMARRGA-RVVMACRDLSKAEKAAAEIRRSTGNADIVVRHLNL 112
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFXXXX 164
ASL SVRQF + + LD+L+ NA V + K + T +G+E NHLGHF
Sbjct: 113 ASLHSVRQFAHQYTATEDRLDILINNAGVMM-CPK--SLTEDGYETQFAVNHLGHFLLTV 169
Query: 165 XXXXXXKQSDYPSKRLIIVGSIT 187
K+S PS R+I V SIT
Sbjct: 170 LLLDMLKKSS-PS-RVINVSSIT 190
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q42850 | PORB_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.8171 | 0.9469 | 0.8582 | N/A | no |
| Q39617 | POR_CHLRE | 1, ., 3, ., 1, ., 3, 3 | 0.6724 | 0.9441 | 0.8513 | N/A | no |
| Q41578 | PORA_WHEAT | 1, ., 3, ., 1, ., 3, 3 | 0.7877 | 0.9581 | 0.8840 | N/A | no |
| P15904 | POR_AVESA | 1, ., 3, ., 1, ., 3, 3 | 0.8333 | 0.8687 | 0.9936 | N/A | no |
| O66148 | POR_PLEBO | 1, ., 3, ., 1, ., 3, 3 | 0.5607 | 0.8715 | 0.9689 | N/A | no |
| Q7XKF3 | PORA_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.8242 | 0.9189 | 0.8501 | yes | no |
| Q01289 | POR_PEA | 1, ., 3, ., 1, ., 3, 3 | 0.8735 | 0.9720 | 0.8721 | N/A | no |
| P21218 | PORB_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8543 | 0.9944 | 0.8877 | no | no |
| Q42536 | PORA_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8632 | 0.9748 | 0.8617 | yes | no |
| Q9SDT1 | POR_DAUCA | 1, ., 3, ., 1, ., 3, 3 | 0.8850 | 0.9664 | 0.8693 | N/A | no |
| Q59987 | POR_SYNY3 | 1, ., 3, ., 1, ., 3, 3 | 0.5548 | 0.8659 | 0.9627 | N/A | no |
| O48741 | PORC_ARATH | 1, ., 3, ., 1, ., 3, 3 | 0.8377 | 0.9413 | 0.8403 | no | no |
| O80333 | POR_MARPA | 1, ., 3, ., 1, ., 3, 3 | 0.7590 | 0.9273 | 0.7248 | N/A | no |
| Q8W3D9 | PORB_ORYSJ | 1, ., 3, ., 1, ., 3, 3 | 0.7965 | 0.9720 | 0.8656 | yes | no |
| Q41249 | PORA_CUCSA | 1, ., 3, ., 1, ., 3, 3 | 0.8882 | 0.9720 | 0.8743 | N/A | no |
| P13653 | PORA_HORVU | 1, ., 3, ., 1, ., 3, 3 | 0.7906 | 0.9581 | 0.8840 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.3.1 | 0.983 |
| 3rd Layer | 1.3.1.33 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 358 | |||
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 0.0 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 0.0 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 0.0 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 1e-180 | |
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 1e-81 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 8e-49 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 5e-41 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 1e-38 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 3e-32 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 9e-27 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 4e-26 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 2e-22 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 9e-22 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 2e-21 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 4e-18 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 5e-17 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-16 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 7e-15 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 9e-15 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 5e-14 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 9e-14 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 1e-13 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 6e-13 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 1e-12 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 2e-12 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 4e-12 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 5e-12 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 5e-12 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 6e-12 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 1e-11 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 2e-11 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 2e-11 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 4e-11 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 6e-11 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 2e-10 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 4e-10 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 5e-10 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 8e-10 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 8e-10 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 1e-09 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 1e-09 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 1e-09 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 2e-09 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 2e-09 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 3e-09 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-09 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 3e-09 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 4e-09 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 5e-09 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 6e-09 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 8e-09 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 1e-08 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 1e-08 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 1e-08 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-08 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 1e-08 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-08 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 1e-08 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-08 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 3e-08 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 4e-08 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 4e-08 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 4e-08 | |
| PRK08177 | 225 | PRK08177, PRK08177, short chain dehydrogenase; Pro | 5e-08 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 5e-08 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 5e-08 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 5e-08 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 6e-08 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 6e-08 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 6e-08 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 7e-08 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 9e-08 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 1e-07 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 1e-07 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 1e-07 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 1e-07 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 2e-07 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 2e-07 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 2e-07 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 3e-07 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 4e-07 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 4e-07 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 5e-07 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 5e-07 | |
| PRK06953 | 222 | PRK06953, PRK06953, short chain dehydrogenase; Pro | 6e-07 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 7e-07 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 7e-07 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 7e-07 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 8e-07 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 8e-07 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 9e-07 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 9e-07 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 1e-06 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 1e-06 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 1e-06 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 1e-06 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 1e-06 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 2e-06 | |
| PRK05717 | 255 | PRK05717, PRK05717, oxidoreductase; Validated | 2e-06 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 2e-06 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 2e-06 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 2e-06 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 3e-06 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 3e-06 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 3e-06 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 3e-06 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 3e-06 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 4e-06 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 4e-06 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 5e-06 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 6e-06 | |
| PRK07041 | 230 | PRK07041, PRK07041, short chain dehydrogenase; Pro | 6e-06 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 6e-06 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 7e-06 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 7e-06 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 8e-06 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 9e-06 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 1e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 1e-05 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 1e-05 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 2e-05 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 2e-05 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 2e-05 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 2e-05 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 2e-05 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-05 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 2e-05 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 2e-05 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 2e-05 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 2e-05 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 3e-05 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 3e-05 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 3e-05 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 4e-05 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 4e-05 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 6e-05 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 6e-05 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 6e-05 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 6e-05 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 7e-05 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 7e-05 | |
| cd11731 | 198 | cd11731, Lin1944_like_SDR_c, Lin1944 and related p | 8e-05 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 8e-05 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 1e-04 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 1e-04 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 1e-04 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 1e-04 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-04 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 2e-04 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 2e-04 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 2e-04 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 2e-04 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 2e-04 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 2e-04 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 2e-04 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 2e-04 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 3e-04 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 3e-04 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 3e-04 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 4e-04 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 5e-04 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 5e-04 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 5e-04 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 5e-04 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 6e-04 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 6e-04 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 8e-04 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-04 | |
| cd08955 | 376 | cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase ( | 8e-04 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 0.001 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 0.001 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 0.001 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 0.001 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 0.001 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 0.001 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 0.001 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 0.002 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 0.002 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 0.002 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 0.003 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 0.003 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 0.003 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 0.003 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 0.004 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 0.004 | |
| TIGR02685 | 267 | TIGR02685, pter_reduc_Leis, pteridine reductase | 0.004 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 694 bits (1794), Expect = 0.0
Identities = 289/308 (93%), Positives = 301/308 (97%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
IITGASSGLGLATAKALAETGKWH++MACRDFLKAERAAKSAGM K++YT+MHLDLASLD
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLD 60
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
SVRQFVD FRRSGRPLDVLVCNAAVYLPTAKEPTFTA+GFELSVGTNHLGHFLLSRLLLD
Sbjct: 61 SVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLD 120
Query: 169 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 228
DLK+SDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG AGGLNGLNSS+MIDGG+FD
Sbjct: 121 DLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDGGEFD 180
Query: 229 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 288
GAKAYKDSKVCNMLTMQEFHRR+HEETGI FASLYPGCIATTGLFREHIPLFRLLFPPFQ
Sbjct: 181 GAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRLLFPPFQ 240
Query: 289 KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVW 348
KYITKGYVSE+EAGKRLAQVVSDPSLTKSGVYWSWN SASFENQLSQEASD EKA+KVW
Sbjct: 241 KYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGSASFENQLSQEASDAEKAKKVW 300
Query: 349 EISEKLVG 356
EISEKLVG
Sbjct: 301 EISEKLVG 308
|
Length = 308 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 593 bits (1530), Expect = 0.0
Identities = 247/316 (78%), Positives = 267/316 (84%), Gaps = 2/316 (0%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
+K +VIITGASSGLGL AKALA TG+WH+IMACRDFLKAE+AAKS GM K++YTIMHL
Sbjct: 1 QQKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHL 60
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
DL SLDSVRQFV FR SGRPLD LVCNAAVY PTAKEP FTA+GFELSVGTNHLGHFLL
Sbjct: 61 DLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLL 120
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 222
LLLDDLK S KRLIIVGSITGNTNTLAGNVPPKANLGDL G A G +MI
Sbjct: 121 CNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANLGDLSGLAAGFKAPI--AMI 178
Query: 223 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282
DG +F GAKAYKDSKVCNMLT++E HRRFH+ETGI FASLYPGCIA TGLFREH+PLFR
Sbjct: 179 DGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREHVPLFRT 238
Query: 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVE 342
LFPPFQKYITKGYVSE+EAG+RLAQVVSDP L KSGVYWSW SF NQLS+E SD
Sbjct: 239 LFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWSWGNRQESFVNQLSEEVSDDS 298
Query: 343 KARKVWEISEKLVGLA 358
KA K+W++SEKLVGLA
Sbjct: 299 KASKMWDLSEKLVGLA 314
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 565 bits (1459), Expect = 0.0
Identities = 241/313 (76%), Positives = 272/313 (86%), Gaps = 2/313 (0%)
Query: 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
KG+V+ITGASSGLGLA AKALA G+WH++MACRDFLKAE+AA+ GM K++Y+++H DL
Sbjct: 1 KGTVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQEVGMPKDSYSVLHCDL 60
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
ASLDSVRQFVD FRR+GRPLD LVCNAAVYLPTAKEP FTA+GFEL+VG NHLGHFLL+
Sbjct: 61 ASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGHFLLTN 120
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 224
LLL+DL++S+ S R++IVGSIT N NTLAGNVPP+A LGDL G AGGL G N SMIDG
Sbjct: 121 LLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFN--SMIDG 178
Query: 225 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284
G+F+GAKAYKDSKVCNMLT E HRR HEETGI F SLYPGCIA TGLFREH PLFR LF
Sbjct: 179 GEFEGAKAYKDSKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFREHYPLFRTLF 238
Query: 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKA 344
PPFQKYITKGYVSE+EAG+RLA V++DPSL SGVYWSW K S SFENQ SQE+SD EKA
Sbjct: 239 PPFQKYITKGYVSEEEAGERLAAVIADPSLGVSGVYWSWGKASGSFENQSSQESSDDEKA 298
Query: 345 RKVWEISEKLVGL 357
RK+WEISEKLVGL
Sbjct: 299 RKLWEISEKLVGL 311
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 502 bits (1294), Expect = e-180
Identities = 189/321 (58%), Positives = 236/321 (73%), Gaps = 9/321 (2%)
Query: 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
KG+VIITGASSG+GL AKALA+ G WH+IMACR+ KAE AA+ G+ ++YTI+H+D
Sbjct: 5 AKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHID 63
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
L LDSVR+FVD FR G+PLD LVCNAAVY+P KEP + +G+ELS+ TNHLGHFLL
Sbjct: 64 LGDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLC 123
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN--VPPKANLGDLRGFAGGLNGLNSSSM 221
LLL+DLK+S P RL+I+G++T N L G +P A+LGDL GF G SM
Sbjct: 124 NLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSGFEAGF--KAPISM 181
Query: 222 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281
DG F KAYKDSK+CNMLTM+E HRR+HE TGI F+SLYPGC+A T LFR PLF+
Sbjct: 182 ADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNTPPLFQ 241
Query: 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW----NKDSASFENQLSQE 337
LFP FQK IT GYVS++ AG+R+AQVV+DP +SGV+WSW KD +F +LS
Sbjct: 242 KLFPWFQKNITGGYVSQELAGERVAQVVADPEFAQSGVHWSWGNRQKKDRKAFSQELSDR 301
Query: 338 ASDVEKARKVWEISEKLVGLA 358
A+D +KAR++W++S KLVGLA
Sbjct: 302 ATDDDKARRLWDLSAKLVGLA 322
|
Length = 322 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 249 bits (638), Expect = 1e-81
Identities = 103/305 (33%), Positives = 140/305 (45%), Gaps = 43/305 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 105
V+ITGA+SG+G TA+ LA+ G H+I+ACR+ K E AA ++ LDL+
Sbjct: 4 VVITGANSGIGKETARELAKRG-AHVIIACRNEEKGEEAAAEIKKETGNAKVEVIQLDLS 62
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
SL SVRQF + F LD+L+ NA + P + T +GFEL N+LGHFLL+ L
Sbjct: 63 SLASVRQFAEEFLARFPRLDILINNAGIMAPPRRL---TKDGFELQFAVNYLGHFLLTNL 119
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG 225
LL LK S R++ V SI + N N
Sbjct: 120 LLPVLKAS--APSRIVNVSSIAHRAGPIDFNDLDLEN---------------------NK 156
Query: 226 DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLF 284
++ KAY SK+ N+L +E RR E TG+ +L+PG + T L R L L
Sbjct: 157 EYSPYKAYGQSKLANILFTRELARR-LEGTGVTVNALHPGVVRTELLRRNGSFFLLYKLL 215
Query: 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFENQLSQEASDVEK 343
PF K S ++ + + P L SG Y+S K S EA D E
Sbjct: 216 RPFLK------KSPEQGAQTALYAATSPELEGVSGKYFSDCK-----IKMSSSEALDEEL 264
Query: 344 ARKVW 348
A K+W
Sbjct: 265 AEKLW 269
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 8e-49
Identities = 115/316 (36%), Positives = 153/316 (48%), Gaps = 57/316 (18%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 105
VIITGA++G+G TA+ LA G +IMACRD K E AA N+ ++ HLDLA
Sbjct: 4 VIITGANTGIGKETARELARRGA-RVIMACRDMAKCEEAAAEIRRDTLNHEVIVRHLDLA 62
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SL S+R F F LDVL+ NA V P +K T +GFE+ G NHLGHFLL+
Sbjct: 63 SLKSIRAFAAEFLAEEDRLDVLINNAGVMRCPYSK----TEDGFEMQFGVNHLGHFLLTN 118
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 224
LLLD LK+S PS R++ V S+ AG + + LNS
Sbjct: 119 LLLDLLKKSA-PS-RIVNVSSLA----HKAGKIN--------------FDDLNSEK---- 154
Query: 225 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------- 277
++ AY SK+ N+L +E RR + TG+ +L+PG + T L R H
Sbjct: 155 -SYNTGFAYCQSKLANVLFTRELARRL-QGTGVTVNALHPG-VVRTELGR-HTGIHHLFL 210
Query: 278 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNKDSASFENQLS 335
L LF PF K + E + + L SG Y+S K + +
Sbjct: 211 STLLNPLFWPFVK-------TPREGAQTSIYLALAEELEGVSGKYFSDCK-----LKEPA 258
Query: 336 QEASDVEKARKVWEIS 351
EA D E AR++WEIS
Sbjct: 259 PEAMDEETARRLWEIS 274
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 5e-41
Identities = 107/323 (33%), Positives = 154/323 (47%), Gaps = 59/323 (18%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 105
+IITGA+SG+G TA++ A G H+I+ACR+ +A A K M LDLA
Sbjct: 4 IIITGANSGIGFETARSFALHGA-HVILACRNMSRASAAVSRILEEWHKARVEAMTLDLA 62
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
SL SV++F + F+ PL VLVCNAAV+ A T T +G E + NHLGHF L +L
Sbjct: 63 SLRSVQRFAEAFKAKNSPLHVLVCNAAVF---ALPWTLTEDGLETTFQVNHLGHFYLVQL 119
Query: 166 LLDDLKQSDYPSKRLIIVGSIT---GNTNTLAGNV------PPKANLGDLRGFAGGLNGL 216
L D L++S R+I+V S + + GN+ PPK
Sbjct: 120 LEDVLRRS--APARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYW------------ 165
Query: 217 NSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276
SM+ AY +K+CN+L E HRR GI SL+PG + + + R
Sbjct: 166 ---SML---------AYNRAKLCNILFSNELHRRLSPR-GITSNSLHPGNMMYSSIHRNW 212
Query: 277 IPLFRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNKDSASFEN 332
++ LLF PF K + +G + + P L G+Y+ + F
Sbjct: 213 W-VYTLLFTLARPFTKSMQQGAATT-------VYCATAPELEGLGGMYF-----NNCFRC 259
Query: 333 QLSQEASDVEKARKVWEISEKLV 355
S EA A+++WE+SE+L+
Sbjct: 260 LPSPEAQSEATAQQLWELSERLI 282
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 1e-38
Identities = 101/334 (30%), Positives = 149/334 (44%), Gaps = 76/334 (22%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 105
++TGA++GLG TA ALA G H+++A R+ K + AA +A + T+ LDL
Sbjct: 19 AVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLT 77
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SL SVR D R + +D+L+ NA V Y P TA+GFEL GTNHLGHF L+
Sbjct: 78 SLASVRAAADALRAAYPRIDLLINNAGVMYTPKQT----TADGFELQFGTNHLGHFALTG 133
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 224
LLLD L P R++ V S G + I
Sbjct: 134 LLLDRLL--PVPGSRVVTVSS----------------------------GGHRIRAAIHF 163
Query: 225 GD------FDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFREH 276
D ++ AY SK+ N+L E RR IA A+ +PG ++ T L R +
Sbjct: 164 DDLQWERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAA-HPG-VSNTELAR-N 220
Query: 277 IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN------- 324
+P + +L P + G + A +DP++ + G Y+ +
Sbjct: 221 LPRALRPVATVLAPLLAQSPEMGALPTLRAA-------TDPAV-RGGQYYGPDGFGEQRG 272
Query: 325 --KDSASFENQLSQEASDVEKARKVWEISEKLVG 356
K AS S ++ D + R++W +SE+L G
Sbjct: 273 YPKVVAS-----SAQSHDEDLQRRLWAVSEELTG 301
|
Length = 306 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-32
Identities = 95/330 (28%), Positives = 135/330 (40%), Gaps = 70/330 (21%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TG SGLGL T +ALA+ G H+I+ R A A AG+ + ++ LDLA L+
Sbjct: 30 IVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREAL--AGI--DGVEVVMLDLADLE 84
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
SVR F + F SGR +D+L+ NA V A T +G+E TNHLGHF L LL
Sbjct: 85 SVRAFAERFLDSGRRIDILINNAGV---MACPETRVGDGWEAQFATNHLGHFALVNLLWP 141
Query: 169 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD 228
L R++ + S AG+ D F G +D
Sbjct: 142 ALAAGA--GARVVALSS--------AGHRRSPIRWDDPH-FTRG--------------YD 176
Query: 229 GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQ 288
AY SK N L + ++ G+ S++PG I T PL R L P +
Sbjct: 177 KWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILT--------PLQRHL--PRE 225
Query: 289 KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS----------------------WNKD 326
+ + G+V DE G + P+ + W+ KD
Sbjct: 226 EQVALGWV--DEHGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIAEPTPKD 283
Query: 327 SASFENQLSQEASDVEKARKVWEISEKLVG 356
+ + A D E A ++W +S L G
Sbjct: 284 APWS--GVRPHAIDPEAAARLWALSAALTG 311
|
Length = 315 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 9e-27
Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGASSG+G A A+ LA G +++A R+ A + + D++
Sbjct: 1 ALVTGASSGIGRAIARRLAREG-AKVVLADRNEEALAELAAIEALGGNAVAV-QADVSDE 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ V V+ LD+LV NA + P E T E ++ + N G FLL+R L
Sbjct: 59 EDVEALVEEALEEFGRLDILVNNAGIARPGPLE-ELTDEDWDRVLDVNLTGVFLLTRAAL 117
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+K+ R++ + S+ G
Sbjct: 118 PHMKKQGGG--RIVNISSVAG 136
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 4e-26
Identities = 94/324 (29%), Positives = 131/324 (40%), Gaps = 50/324 (15%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLDL 104
++TGAS GLGL A+ LA G +I+ R+ K E A + AK ++ LDL
Sbjct: 18 VVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAK--LSLRALDL 74
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+SL SV + R GRP+ +L+ NA V P ++ TA+GFEL GTNHLGHF L+
Sbjct: 75 SSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQT--TADGFELQFGTNHLGHFALTA 132
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 224
LL L+ R+ SI + N D LN S
Sbjct: 133 HLLPLLRAG---RARVTSQSSIAARRGAI--------NWDD-------LNWERS------ 168
Query: 225 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGLF-------REH 276
+ G +AY SK+ L E RR GI +PG +A T L R+
Sbjct: 169 --YAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPG-VAPTNLLAARPEVGRDK 225
Query: 277 -IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY---WSWNKDSASFEN 332
+ RL+ + G V + A + P Y E
Sbjct: 226 DTLMVRLIRSLSARGFLVGTV--ESAILPALYAATSPDAEGGAFYGPRGPGELGGGPVEQ 283
Query: 333 QLSQEASDVEKARKVWEISEKLVG 356
L +A ++WE+SE+L G
Sbjct: 284 ALYPPLRRNAEAARLWEVSEQLTG 307
|
Length = 313 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-22
Identities = 73/296 (24%), Positives = 109/296 (36%), Gaps = 82/296 (27%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL--- 104
V+ITGAS G+GL + L G +I CRD A + G + I+ LD+
Sbjct: 1 VLITGASRGIGLELVRQLLARGNNTVIATCRD-PSAATELAALGASHSRLHILELDVTDE 59
Query: 105 --ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
S ++V + R LDVL+ NA + +E N LG LL
Sbjct: 60 IAESAEAVAE-----RLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLGPLLL 114
Query: 163 SRLLLDDLKQSDYPSKRLII-----VGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLN 217
++ L L + ++ II VGSI NT
Sbjct: 115 TQAFLPLLLKG---ARAKIINISSRVGSIGDNT--------------------------- 144
Query: 218 SSSMIDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEE---TGIAFASLYPGCIAT--TG 271
GG + +Y+ SK NMLT + E GI SL+PG + T G
Sbjct: 145 -----SGGWY----SYRASKAALNMLT-----KSLAVELKRDGITVVSLHPGWVRTDMGG 190
Query: 272 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327
PF K KG ++ +E+ L +V+ + + SG + ++
Sbjct: 191 --------------PFAK--NKGPITPEESVAGLLKVIDNLNEEDSGKFLDYDGTE 230
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 9e-22
Identities = 42/148 (28%), Positives = 68/148 (45%), Gaps = 8/148 (5%)
Query: 48 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLA 105
++TGASSG+G A A+ALA G + + + AE A + A + D++
Sbjct: 8 ALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVS 67
Query: 106 S-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+SV V +D+LV NA + P A T E ++ + N LG FLL+R
Sbjct: 68 DDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTR 127
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNT 192
L +K+ +R++ + S+ G
Sbjct: 128 AALPLMKK-----QRIVNISSVAGLGGP 150
|
Length = 251 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 44/223 (19%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G + LA++G +I+ RD + + A + + LD+
Sbjct: 3 ALVTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAEGLSVRFHQLDVTDD 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
S+ D LD+LV NA + + T T E ++ TN G +++ LL
Sbjct: 63 ASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVTQALL 122
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF 227
LK+S R++ V S G+ +
Sbjct: 123 PLLKKSPAG--RIVNVSSGLGSLTS----------------------------------- 145
Query: 228 DGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT 269
AY SK N LT + +ETGI + PG + T
Sbjct: 146 ----AYGVSKAALNALTR--ILAKELKETGIKVNACCPGWVKT 182
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 4e-18
Identities = 65/236 (27%), Positives = 112/236 (47%), Gaps = 34/236 (14%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDL 104
S +ITGA+SG+G A A A+A+ G + M CR+ +AE A K +N + +D+
Sbjct: 3 SFLITGANSGIGKAAALAIAKRGG-TVHMVCRNQTRAEEARKEIETESGNQNIFLHIVDM 61
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ V +FV+ F+ G+ L VL+ NA + + T +G E + TN LG ++L+
Sbjct: 62 SDPKQVWEFVEEFKEEGKKLHVLINNAGCMV---NKRELTEDGLEKNFATNTLGTYILTT 118
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDG 224
L+ L++ + P R+I V S G + K N +L+ +
Sbjct: 119 HLIPVLEKEEDP--RVITVSS--------GGMLVQKLNTNNLQS--------------ER 154
Query: 225 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280
FDG Y +K ++ +++ ++ E I F+ ++PG T + R +P F
Sbjct: 155 TAFDGTMVYAQNKRQQVIMTEQWAKKHPE---IHFSVMHPGWADTPAV-RNSMPDF 206
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 5e-17
Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 9/145 (6%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 103
G+V+ITG + GLGLA A+ LA G H+++ R A A + T+ D
Sbjct: 1 GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALGAEVTVAACD 60
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+A D++ + + PLD +V NA V L T E FE + G + L
Sbjct: 61 VADRDALAALLAALPAALGPLDGVVHNAGV-LDDGPLEELTPERFERVLAPKVTGAWNLH 119
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
L D ++ S+ G
Sbjct: 120 ELTRDL------DLGAFVLFSSVAG 138
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 1e-16
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 8/150 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A LA G +++ + AE A A ++ D++
Sbjct: 8 ALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDE 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+VR ++ + LD+LV NA + A P + E ++ + N G F + R L
Sbjct: 67 AAVRALIEAAVEAFGALDILVNNAGIT-RDALLPRMSEEDWDRVIDVNLTGTFNVVRAAL 125
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ ++ Y R++ + S++G + GN
Sbjct: 126 PPMIKARY--GRIVNISSVSG----VTGNP 149
|
Length = 246 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-15
Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 7/141 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG SSG+GLA A ALA G + +I R+ K E + +N ++ LD+
Sbjct: 3 VLITGCSSGIGLALALALAAQG-YRVIATARNPDKLE---SLGELLNDNLEVLELDVTDE 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+S++ V +DVLV NA L E + E N G ++R L
Sbjct: 59 ESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLE-ETSIEEVRELFEVNVFGPLRVTRAFL 117
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+++ S R++ V S+ G
Sbjct: 118 PLMRKQ--GSGRIVNVSSVAG 136
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 9e-15
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 6/142 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G A A LA G +I+ A A+ A +D+
Sbjct: 9 ALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRDR 67
Query: 108 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+++ V GR LD+LV NA ++ T E +E + N G FLL++
Sbjct: 68 AALKAAVAAGVEDFGR-LDILVANAGIFPLTPFA-EMDDEQWERVIDVNLTGTFLLTQAA 125
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L L ++ R+++ S+ G
Sbjct: 126 LPALIRAGGG--RIVLTSSVAG 145
|
Length = 251 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 5e-14
Identities = 45/161 (27%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---- 96
TL+ +ITGASSG+G ATA+ALAE G +++A R R + +A E
Sbjct: 2 TTLKGKVALITGASSGIGEATARALAEAG-AKVVLAAR------REERLEALADEIGAGA 54
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 156
+ LD+ +V ++ +D+LV NA + L + ++ + TN
Sbjct: 55 ALALALDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNV 113
Query: 157 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
G +R +L + + S +I +GSI G G V
Sbjct: 114 KGLLNGTRAVLPGMVERK--SGHIINLGSIAGRYPYPGGAV 152
|
Length = 246 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 9e-14
Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
V++TG +SG+G A A+A AE G + H+ L AA +A + T D+A
Sbjct: 13 RVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAAL----AATAARLPGAKVTATVADVA 68
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
V + DT LDVLV NA + PT T E +E ++ N G F +R
Sbjct: 69 DPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARA 128
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
+ LK S +II S
Sbjct: 129 AVPLLKAS--GHGGVIIALSSVA 149
|
Length = 264 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 1e-13
Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT----IMHLD 103
V+ITGASSG+G ATA+ A+ G +I+ R +AER + A + + LD
Sbjct: 3 VLITGASSGIGEATARRFAKAG-AKLILTGR---RAERLQELADELGAKFPVKVLPLQLD 58
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++ +S+ ++ R +D+LV NA + L E +E + TN G ++
Sbjct: 59 VSDRESIEAALENLPEEFRDIDILVNNAGLALGLDPAQEADLEDWETMIDTNVKGLLNVT 118
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
RL+L + + +I +GSI G GNV
Sbjct: 119 RLILPIMIARNQGH--IINLGSIAGRYPYAGGNV 150
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 6e-13
Identities = 48/145 (33%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
++TGASSG+G ATA+ LA G R F + A++A + ++ LD+
Sbjct: 4 SKVALVTGASSGIGRATAEKLARAG-------YRVFGTSRNPARAAPIP--GVELLELDV 54
Query: 105 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
SV+ VD R+GR +DVLV NA V L A E + A+ L TN G ++
Sbjct: 55 TDDASVQAAVDEVIARAGR-IDVLVNNAGVGLAGAAEESSIAQAQAL-FDTNVFGILRMT 112
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
R +L ++ S R+I + S+ G
Sbjct: 113 RAVLPHMRAQG--SGRIINISSVLG 135
|
Length = 270 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKENYTIMHLD 103
V+ITG SSG+G A AK L + G ++I+ R K E A A + + + + D
Sbjct: 4 VLITGGSSGIGKALAKELVKEGA-NVIIVARSESKLEEAVEEIEAEANASGQKVSYISAD 62
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
L+ + V Q G P D++V A + +P E TAE FE + N+ G ++
Sbjct: 63 LSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFE-DLTAEEFERGMDVNYFGSLNVA 121
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
+L +K + ++ V S
Sbjct: 122 HAVLPLMK--EQRPGHIVFVSSQAA 144
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 50/179 (27%), Positives = 74/179 (41%), Gaps = 41/179 (22%)
Query: 48 VIITGASSGLGLATAKAL----AETGKWHIIMACRDFLKAERA----AKSAGMAKENYTI 99
V++TGA+SGLGLA + L E + +I+ACR+ +AE A S A+ +
Sbjct: 4 VLVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDY 63
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA-----------------------AVYLP 136
+ +DL+++ SV ++ LD L NA AV P
Sbjct: 64 VLVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTNP 123
Query: 137 TAK---------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186
T K T +G TN GH+ L R L L +SD S ++I S+
Sbjct: 124 TYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGS-QIIWTSSL 181
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-12
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%)
Query: 48 VIITGASSGLGLATAKALA--ETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDL 104
V+ITG SSG+GL A LA + ++ + RD K R ++AG +A + LD+
Sbjct: 3 VLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRLWEAAGALAGGTLETLQLDV 62
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SV V+ R +DVLVCNA V L E + + N G + +
Sbjct: 63 CDSKSVAAAVERVT--ERHVDVLVCNAGVGLLGPLE-ALSEDAMASVFDVNVFGTVRMLQ 119
Query: 165 LLLDDLKQSDYPSKRLIIVGSITG 188
L D+K+ S R+++ S+ G
Sbjct: 120 AFLPDMKRRG--SGRILVTSSVGG 141
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 47/166 (28%), Positives = 74/166 (44%), Gaps = 9/166 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G+ A+ALA G + + + R+ + + + + D
Sbjct: 3 ALVTGASRGIGIEIARALARDG-YRVSLGLRN----PEDLAALSASGGDVEAVPYDARDP 57
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ R VD R +DVLV NA + PT AE E N + L+R LL
Sbjct: 58 EDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAE-LEAHFSINVIAPAELTRALL 116
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L+++ S R++ + S++G LAGN A+ LR A L
Sbjct: 117 PALREA--GSGRVVFLNSLSGKR-VLAGNAGYSASKFALRALAHAL 159
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 57/190 (30%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
+L+ +ITG S G+G A A+AL G I A RD + E AA K N +
Sbjct: 3 SLKGKVALITGGSKGIGFAIAEALLAEGYKVAITA-RDQKELEEAAAELN-NKGNVLGLA 60
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGH 159
D+ V++ VD + LDVL+ NA V + P T E + L + TN G
Sbjct: 61 ADVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVE---ELTPEEWRLVIDTNLTGA 117
Query: 160 FLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNS 218
F + + LK+ Y +I + S+ G TN AG A+ F GL G +
Sbjct: 118 FYTIKAAVPALKRGGGY----IINISSLAG-TNFFAGGAAYNAS-----KF--GLVGFSE 165
Query: 219 SSMIDGGDFD 228
++M+D +
Sbjct: 166 AAMLDLRQYG 175
|
Length = 237 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 6e-12
Identities = 34/154 (22%), Positives = 63/154 (40%), Gaps = 8/154 (5%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA 105
++TGA+ GLG A A LA G +++ R D AE ++ + D+
Sbjct: 8 VALVTGAARGLGRAIALRLARAG-ADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVT 66
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++ V R GR +D+LV NA + + + ++ + N G F L R
Sbjct: 67 DKAALEAAVAAAVERFGR-IDILVNNAGI-FEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
++ +++ R++ + S+ G G
Sbjct: 125 AVVPPMRKQRG--GRIVNISSVAGLPGW-PGRSN 155
|
Length = 249 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A LA G + + R A + N + D++
Sbjct: 3 ALVTGASRGIGRAIALRLAAEGA-KVAVTDRSEEAAAETVEEIKALGGNAAALEADVSDR 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++V V+ P+D+LV NA + L E E ++ + N G F ++
Sbjct: 62 EAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSE-----EDWDAVINVNLTGVFNVT 116
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ ++ + + R+I + S+ G L GN
Sbjct: 117 QAVIRAMIKRRS--GRIINISSVVG----LIGNP 144
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 40/142 (28%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
+ ++TGA+SG+GLA A+ALA G ++++ AE AAK AG A + + D+
Sbjct: 3 TALVTGAASGIGLAIARALAAAGA-NVVVNDFGEEGAEAAAKVAGDAGGSVIYLPADVTK 61
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
D + + LD+LV NA + E F E ++ + F R
Sbjct: 62 EDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIE-EFPPEDWDRIIAVMLTSAFHTIRAA 120
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L +K+ + R+I + S G
Sbjct: 121 LPHMKKQGW--GRIINIASAHG 140
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G ATAK LA G +++A D AE AA G + + D+
Sbjct: 425 ALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELG-GPDRALGVACDVTDE 482
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+V+ + + +D++V NA + + E T + E + S N GHFL++R
Sbjct: 483 AAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEET-SDEDWRRSFDVNATGHFLVAR 538
|
Length = 681 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-11
Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
L + ++TG + G+G A + LA G + R+ + +
Sbjct: 3 NLEGKTALVTGGTKGIGYAIVEELAGLGA-EVYTCARNQKELDECLTEWREKGFKVEGSV 61
Query: 102 LDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGH 159
D++S ++ +DT G L++LV NA + KE +T E + L + TN
Sbjct: 62 CDVSSRSERQELMDTVASHFGGKLNILVNNAGTNIR--KEAKDYTEEDYSLIMSTNFEAA 119
Query: 160 FLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+ LSRL LK S + ++ + S+ G
Sbjct: 120 YHLSRLAHPLLKASGNGN--IVFISSVAG 146
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 105
V+ITG +SG+GLA A+ E G +I+ R R + A KE I + LD+
Sbjct: 8 VLITGGTSGIGLALARKFLEAGN-TVIITGR------REERLAEAKKELPNIHTIVLDVG 60
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+SV + LD+L+ NA + P ++P + + + TN +G L +
Sbjct: 61 DAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDLDKADTEIDTNLIGPIRLIK 120
Query: 165 LLLDDLK 171
L LK
Sbjct: 121 AFLPHLK 127
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 2/107 (1%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG+S G+G A A+ LA+ G +I+ RD K AA+S + + D+ D
Sbjct: 14 LVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHD 72
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 155
+VR +D F P+D+LV NA + T E F A+ FE + TN
Sbjct: 73 AVRAAIDAFEAEIGPIDILVNNAGMQFRTPLE-DFPADAFERLLRTN 118
|
Length = 255 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 4e-10
Identities = 33/91 (36%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
LR V ITG + G+GLATA+ALA G + + D A+ A G+ L
Sbjct: 3 LRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGP----L 57
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133
D+ S F+D P+DVLV NA V
Sbjct: 58 DVTDPASFAAFLDAVEADLGPIDVLVNNAGV 88
|
Length = 273 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-10
Identities = 36/124 (29%), Positives = 51/124 (41%), Gaps = 7/124 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG G+G E G ++ A D ER A A N +H D+A
Sbjct: 4 AIVTGGGHGIGKQICLDFLEAG-DKVVFADID---EERGADFAEAEGPNLFFVHGDVADE 59
Query: 108 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
V+ V + GR +DVLV NAA + E ++ + N G + LSR
Sbjct: 60 TLVKFVVYAMLEKLGR-IDVLVNNAARGSKGILS-SLLLEEWDRILSVNLTGPYELSRYC 117
Query: 167 LDDL 170
D+L
Sbjct: 118 RDEL 121
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLAS 106
I+TGASSG GL T LA+ G + +I R+ K E A ++N + LD+
Sbjct: 7 IVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF--ELSVG-------TNHL 157
+S+ F + GR +D+LV NA + GF E+ V TN
Sbjct: 66 QNSIHNFQLVLKEIGR-IDLLVNNAG----------YANGGFVEEIPVEEYRKQFETNVF 114
Query: 158 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
G +++ +L +++ S ++I + SI+G
Sbjct: 115 GAISVTQAVLPYMRKQK--SGKIINISSISG 143
|
Length = 280 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-10
Identities = 52/184 (28%), Positives = 71/184 (38%), Gaps = 27/184 (14%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
+ ++TGAS G+G ATA+ L G I A RD + AA E + D+
Sbjct: 1 KAALVTGASRGIGEATARLLHAEGYRVGICA-RDEARLAAAAAQEL---EGVLGLAGDVR 56
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
VR+ VD + LD LV NA V + T E + L + TN G F
Sbjct: 57 DEADVRRAVDAMEEAFGGLDALVNNAGVGV-MKPVEELTPEEWRLVLDTNLTGAFYCIHK 115
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAG------GLNGLNSS 219
L IV N +LAG +G A GL GL+ +
Sbjct: 116 AAPALL----RRGGGTIV-----NVGSLAGKNA-------FKGGAAYNASKFGLLGLSEA 159
Query: 220 SMID 223
+M+D
Sbjct: 160 AMLD 163
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-09
Identities = 38/147 (25%), Positives = 57/147 (38%), Gaps = 5/147 (3%)
Query: 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
+ I+TGAS G+G A A LA G I D +A A D+
Sbjct: 1 RPVAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGRRAIYFQADI 60
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLS 163
L +D LD LV NA + + + T + F+ + N G F L+
Sbjct: 61 GELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGPFFLT 120
Query: 164 ----RLLLDDLKQSDYPSKRLIIVGSI 186
R +++ + D P + +I V SI
Sbjct: 121 QAVARRMVEQPDRFDGPHRSIIFVTSI 147
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 10/150 (6%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
L+ ++TGA+SG+GL A ALA+ G +++A + A AA++ K +
Sbjct: 1 MLKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEAL--QKAGGKAIG 57
Query: 102 L--DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
+ D+ +++ +D G +D+LV NA + E F E ++ + G
Sbjct: 58 VAMDVTDEEAINAGIDYAVETFGG-VDILVNNAGIQHVAPIE-DFPTEKWKKMIAIMLDG 115
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
FL ++ L +K R+I + S+ G
Sbjct: 116 AFLTTKAALPIMKAQGG--GRIINMASVHG 143
|
Length = 258 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
ITG +G+G A AKA AE G + +A R E AA+ SA + + D+
Sbjct: 6 AFITGGGTGIGKAIAKAFAELG-ASVAIAGRKPEVLEAAAEEISSATGGRAHPIQC--DV 62
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++V VD + +D+L+ NAA E + + GF+ + + G F ++
Sbjct: 63 RDPEAVEAAVDETLKEFGKIDILINNAAGNFLAPAE-SLSPNGFKTVIDIDLNGTFNTTK 121
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194
+ L ++ + GSI + T A
Sbjct: 122 AVGKRLIEAKHG-------GSILNISATYA 144
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTI 99
++ + +ITGASSG+G AK LA G ++I+ R K E AK +
Sbjct: 2 GPMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEV 60
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHL 157
+ DL+ +++ + D + G P+DVLV NA + P + + + E + N L
Sbjct: 61 IPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLE---LSLDEEEEMIQLNIL 117
Query: 158 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
L++ +L + + +I +GS G
Sbjct: 118 ALTRLTKAVLPGMVERGA--GHIINIGSAAGLI 148
|
Length = 265 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKEN 96
QGK VIITGASSG+G A LA G ++++ R + E ++ + +
Sbjct: 2 QGKV------VIITGASSGIGEELAYHLARLGA-RLVLSARREERLEEVKSECLELGAPS 54
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 156
++ LD++ L+ Q V+ + LD+L+ NA + + + T + + + N+
Sbjct: 55 PHVVPLDMSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDT-SIDVDRKIMEVNY 113
Query: 157 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
G L++ L L + S +++V SI G
Sbjct: 114 FGPVALTKAALPHLIERSQGS--IVVVSSIAG 143
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 45/141 (31%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITGASSG+G ATA A AE G +++A R A+ + D+A
Sbjct: 3 VVITGASSGIGRATALAFAERGA-KVVLAARSAEALHELAREVRELGGEAIAVVADVADA 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V + DT +D V NA V + E T E F N+LGH + L
Sbjct: 62 AQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDV-TPEEFRRVFDVNYLGHVYGTLAAL 120
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
L++ LI VGS+ G
Sbjct: 121 PHLRRRGG--GALINVGSLLG 139
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A+ LA G +I AE G + D++
Sbjct: 8 ALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDA 67
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSRL 165
+SV + VD + +D+LV NA + T E ++ + TN G F L++
Sbjct: 68 ESVERAVDEAKAEFGGVDILVNNAGI---TRDNLLMRMKEEDWDRVIDTNLTGVFNLTKA 124
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ + + S R+I + S+ G L GN
Sbjct: 125 VARPMMKQ--RSGRIINISSVVG----LMGNP 150
|
Length = 248 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 16/147 (10%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V++TGAS G+G A A+ALA G +++ R+ K E A + + DL S
Sbjct: 7 RVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLP-YPGRHRWVVADLTS 64
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
V R ++VL+ NA V L E E + N L
Sbjct: 65 EAGREA-VLARAREMGGINVLINNAGVNHFALLEDQ-----DPEAIERLLALNLTAPMQL 118
Query: 163 SRLLLDDLKQSDYPSKRLII-VGSITG 188
+R LL L+ +++ VGS G
Sbjct: 119 TRALLPLLRA---QPSAMVVNVGSTFG 142
|
Length = 263 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERA-AKSAGMAKENYTIMHLDLA 105
V+ITGASSG+G ATA +AE G ++A + L A ++ G YT DL
Sbjct: 374 VLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTC---DLT 430
Query: 106 SLDSVRQFVDT-FRRSGRPLDVLVCNA 131
+V V G +D LV NA
Sbjct: 431 DSAAVDHTVKDILAEHGH-VDYLVNNA 456
|
Length = 657 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-09
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 4/128 (3%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTI 99
K L +ITGAS+G+G A+A ALA+ G + + + + + KS G + Y
Sbjct: 2 KRLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAY-- 59
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159
H+D++ V+ F + +DVL NA V + + + F+ + + G
Sbjct: 60 -HVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGT 118
Query: 160 FLLSRLLL 167
FL++++LL
Sbjct: 119 FLMTKMLL 126
|
Length = 272 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 40/125 (32%), Positives = 51/125 (40%), Gaps = 16/125 (12%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
S++ITG SSG+G A+AL G W + CR + A + E LD A
Sbjct: 6 SILITGCSSGIGAYCARALQSDG-WRVFATCR------KEEDVAALEAEGLEAFQLDYAE 58
Query: 107 LDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLG-HFL 161
+S+ V SG LD L N A P A E T FE N G H L
Sbjct: 59 PESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFE----ANFFGWHDL 114
Query: 162 LSRLL 166
R++
Sbjct: 115 TRRVI 119
|
Length = 277 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 8e-09
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
KG V ++TGAS G+G A LAE G +I++ R+ KAE A + T D
Sbjct: 4 KGKVALVTGASRGIGFGIASGLAEAGA-NIVINSRNEEKAEEAQQLIEKEGVEATAFTCD 62
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++ ++++ V+ +D+LV NA + E F + + N G F +S
Sbjct: 63 VSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAE-EFPEAEWRDVIDVNLNGVFFVS 121
Query: 164 RLLLDDLKQSDYPSKRLIIVGSIT 187
+ + + + + ++I + S+
Sbjct: 122 QAVARHMIKQGHG--KIINICSLL 143
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 105
++TGA+ GLG A A+ALAE G + D L AE +A + DLA
Sbjct: 10 ALVTGAARGLGAAFAEALAEAG-ATVAFN--DGLAAEARELAAALEAAGGRAHAIAADLA 66
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
SV++F D + LD LV NA + + + ++ + N G FL+ R
Sbjct: 67 DPASVQRFFDAAAAALGGLDGLVNNAGI-TNSKSATELDIDTWDAVMNVNVRGTFLMLRA 125
Query: 166 LLDDLKQSDYPSKRLIIVGSIT 187
L L+ S R++ + S T
Sbjct: 126 ALPHLRDS--GRGRIVNLASDT 145
|
Length = 250 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 1e-08
Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 17/143 (11%)
Query: 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
+ ITG+S GLGLA A+ L G +++ R +RAA + ++ D
Sbjct: 6 PMKRIFITGSSDGLGLAAARTLLHQGH-EVVLHARS---QKRAADAKAACPGAAGVLIGD 61
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLL 162
L+SL R+ D GR D ++ NA + P K P G V N L ++L
Sbjct: 62 LSSLAETRKLADQVNAIGR-FDAVIHNAGILSGPNRKTPD---TGIPAMVAVNVLAPYVL 117
Query: 163 SRLLLDDLKQSDYPSKRLIIVGS 185
+ L+ KRLI + S
Sbjct: 118 TALIR--------RPKRLIYLSS 132
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 18/150 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-----NYTIMH- 101
VIITGAS G+G A A LA G + L A + A +A+E ++
Sbjct: 4 VIITGASEGIGRALAVRLARAG-------AQLVLAARNETRLASLAQELADHGGEALVVP 56
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
D++ ++ + ++ R G +D+LV NA + + + + FE + N+LG
Sbjct: 57 TDVSDAEACERLIEAAVARFGG-IDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAV 115
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
+ L LK S ++++V S+ G T
Sbjct: 116 YCTHAALPHLKASR---GQIVVVSSLAGLT 142
|
Length = 263 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITG +SG+GLATAK L + G + + R+ A A K T + D+ S
Sbjct: 3 AIITGGASGIGLATAKLLLKKG-AKVAILDRNENPGAAAELQAINPKVKATFVQCDVTSW 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
+ + +D+L+ NA + YL K P +E ++ N G
Sbjct: 62 EQLAAAFKKAIEKFGRVDILINNAGILDEKSYLFAGKLP----PPWEKTIDVNLTGVINT 117
Query: 163 SRLLLDDLKQSDY-PSKRLIIVGSITG 188
+ L L + ++ ++ +GS+ G
Sbjct: 118 TYLALHYMDKNKGGKGGVIVNIGSVAG 144
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 59/256 (23%), Positives = 91/256 (35%), Gaps = 68/256 (26%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---------------RAA 87
L +TGAS G+G A A LA+ G +++A + + +
Sbjct: 1 LSGKVAFVTGASRGIGRAIALRLAKAGA-TVVVAAKTASEGDNGSAKSLPGTIEETAEEI 59
Query: 88 KSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
++AG + I+ +D+ D VR V+ T + GR LD+LV NA + E T A+
Sbjct: 60 EAAG--GQALPIV-VDVRDEDQVRALVEATVDQFGR-LDILVNNAGAIWLSLVEDT-PAK 114
Query: 147 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206
F+L N G +LLS+ L + ++ I+ S + G+V
Sbjct: 115 RFDLMQRVNLRGTYLLSQAALPHMVKAGQG---HILNISPPLSLRPARGDVA-------- 163
Query: 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTM---QEFHRRFHEETGIAFASL 262
Y K + LT+ E R GIA SL
Sbjct: 164 --------------------------YAAGKAGMSRLTLGLAAELRRH-----GIAVNSL 192
Query: 263 YPGCIATTGLFREHIP 278
+P T E
Sbjct: 193 WPSTAIETPAATELSG 208
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 1e-08
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG + GLGLA A+ L G ++++ + + AA G + HLD+
Sbjct: 8 AIVTGGARGLGLAHARLLVAEGA-KVVLSDILDEEGQAAAAELG---DAARFFHLDVTDE 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D VDT R + LDVLV NA + E T T E + + N G FL +R ++
Sbjct: 64 DGWTAVVDTAREAFGRLDVLVNNAGILTGGTVE-TTTLEEWRRLLDINLTGVFLGTRAVI 122
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+K++ S +I + SI G
Sbjct: 123 PPMKEAGGGS--IINMSSIEG 141
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++T ASSG+GLA A+ALA G I A R+ ERAA + DL
Sbjct: 4 ALVTAASSGIGLAIARALAREGARVAICA-RNRENLERAASELRAGGAGVLAVVADLTDP 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSR 164
+ + + V+ + +D+LV NA F T E + + L + R
Sbjct: 63 EDIDRLVEKAGDAFGRVDILVNNA----GGPPPGPFAELTDEDWLEAFDLKLLSVIRIVR 118
Query: 165 LLLDDLKQSDYPSKRLIIVGSITG 188
+L +K+ + R++ + S+T
Sbjct: 119 AVLPGMKERGWG--RIVNISSLTV 140
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 11/152 (7%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY---TI 99
L I+TGAS G+G A A+ LA+ G +++A + E A + KE
Sbjct: 3 LMGKVAIVTGASGGIGRAIAELLAKEG-AKVVIAYD--INEEAAQELLEEIKEEGGDAIA 59
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLG 158
+ D++S + V V+ +D+LV NA + + T E ++ + N G
Sbjct: 60 VKADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTD--MTDEEWDRVIDVNLTG 117
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
LL+R L + + ++ + SI G
Sbjct: 118 VMLLTRYALPYMIKRKSGV--IVNISSIWGLI 147
|
Length = 247 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 40/133 (30%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDL 104
+++ITG +SG+GLA AK E G II + A EN I D+
Sbjct: 7 TILITGGASGIGLALAKRFLELGNTVIIC-------GRNEERLAEAKAENPEIHTEVCDV 59
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFL 161
A DS R+ V+ ++ L+VL+ NA + T E + E + TN L
Sbjct: 60 ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLL--DDAEQEIATNLLAPIR 117
Query: 162 LSRLLLDDLKQSD 174
L+ LLL L +
Sbjct: 118 LTALLLPHLLRQP 130
|
Length = 245 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 105
++TGA+ G+G A A+A A G + +A D AERAA + +A + D+
Sbjct: 10 ALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVT 68
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAV 133
SV V + PLDVLV NA +
Sbjct: 69 DAASVAAAVAAAEEAFGPLDVLVNNAGI 96
|
Length = 260 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER---AAKSAGMAKEN 96
+ITGASSG+G ATA A A+ G W + + R E +S G+
Sbjct: 1 MSLNSMPRALITGASSGIGKATALAFAKAG-WDLALVARSQDALEALAAELRSTGVKAAA 59
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
Y+I DL++ +++ + DVL+ NA
Sbjct: 60 YSI---DLSNPEAIAPGIAELLEQFGCPDVLINNA 91
|
Length = 241 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG +SG+GLA AK LA G +++A D AE+ A++A + D+ S
Sbjct: 4 ALVTGGASGIGLAIAKRLAAEGA-AVVVADIDPEIAEKVAEAAQGGPRALGVQ-CDVTSE 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V+ + LD++V NA + + T + E + S+ N GHFL+SR
Sbjct: 62 AQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAET-SLEDWNRSMDINLTGHFLVSR 117
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|236173 PRK08177, PRK08177, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
+ +I GAS GLGL L E G W + R + G+ E LD+
Sbjct: 3 TALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDTALQALPGVHIEK-----LDMND 56
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 142
S+ Q + R G+ D+L NA + P +
Sbjct: 57 PASLDQLLQ--RLQGQRFDLLFVNAGISGPAHQSAA 90
|
Length = 225 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 5e-08
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA+ G+G A + A G +++A R+ +A A S G ++ + +D++
Sbjct: 8 VLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLG---PDHHALAMDVSDE 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 164
+R+ + R +DVLV NA V PT T T E F N G +L++R
Sbjct: 64 AQIREGFEQLHREFGRIDVLVNNAGVTDPTMT-ATLDTTLEEFARLQAINLTGAYLVAR 121
|
Length = 520 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
+ +ITGAS G+G A A+ LA T +++ R AER + A T +DL
Sbjct: 5 TALITGASRGIGAAIARELAPT--HTLLLGGRP---AERLDELAA-ELPGATPFPVDLTD 58
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAV 133
+++ V+ R LDVLV NA V
Sbjct: 59 PEAIAAAVEQLGR----LDVLVHNAGV 81
|
Length = 227 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 15/132 (11%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 97
QGK L ITG +SG+GL TA+ G + + RD E A G E+
Sbjct: 5 QGKTAL------ITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELG---ESA 54
Query: 98 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTN 155
++ D + + + + LD + NA A + P + F+ S TN
Sbjct: 55 LVIRADAGDVAAQKALAQALAEAFGRLDAVFINAGVAKFAPLED---WDEAMFDRSFNTN 111
Query: 156 HLGHFLLSRLLL 167
G + L + LL
Sbjct: 112 VKGPYFLIQALL 123
|
Length = 249 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-08
Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 8/143 (5%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V ITG GLG ATA LA G + + R A + G+ + I +DL
Sbjct: 9 VVAITGGFGGLGRATAAWLAARGA-RVALIGRG--AAPLSQTLPGVPADALRIGGIDLVD 65
Query: 107 LDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ R+ VD R+ GR LD LV A ++ A+ ++ G N S+
Sbjct: 66 PQAARRAVDEVNRQFGR-LDALVNIAGAFVWGTIA-DGDADTWDRMYGVNVKTTLNASKA 123
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
L L S R++ +G+
Sbjct: 124 ALPALTAS--GGGRIVNIGAGAA 144
|
Length = 239 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
I+TGASSG+G A+ A G +++ R+ AER A A + D++
Sbjct: 7 VAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEIL-AGGRAIAVAADVSD 64
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNA 131
V V R G +D+LV NA
Sbjct: 65 EADVEAAVAAALERFGS-VDILVNNA 89
|
Length = 251 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 24/86 (27%), Positives = 38/86 (44%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A LA+ G II AE + + D++
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDR 60
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAV 133
+ V+ V+ P+D+LV NA +
Sbjct: 61 EDVKAVVEEIEEELGPIDILVNNAGI 86
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 7e-08
Identities = 48/164 (29%), Positives = 70/164 (42%), Gaps = 14/164 (8%)
Query: 30 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89
P + + +G L+ +ITG SG+G A A A+ G I + +L A
Sbjct: 31 PQFEAPNYKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIV---YLDEHEDANE 86
Query: 90 AGMAKENYTIMHL----DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFT 144
E + L D++ + V+ T R GR LD+LV NAA P T
Sbjct: 87 TKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR-LDILVNNAAFQYPQQSLEDIT 145
Query: 145 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
AE + + TN +F +++ L LKQ +I GSITG
Sbjct: 146 AEQLDKTFKTNIYSYFHMTKAALPHLKQGS----AIINTGSITG 185
|
Length = 290 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-08
Identities = 54/234 (23%), Positives = 84/234 (35%), Gaps = 60/234 (25%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLD 103
IITG+SSG+G TA A G + RD + E +S AG++++ ++ D
Sbjct: 5 VAIITGSSSGIGAGTAILFARLGARLALTG-RDAERLEETRQSCLQAGVSEKKILLVVAD 63
Query: 104 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
L + + + T + GR LD+LV NA + E E ++ + N L
Sbjct: 64 LTEEEGQDRIISTTLAKFGR-LDILVNNAGILAKGGGE-DQDIEEYDKVMNLNLRAVIYL 121
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 222
++L + L ++ G I +N SS+
Sbjct: 122 TKLAVPHLIKTK---------GEI-----------------------------VNVSSVA 143
Query: 223 DGGDFDGAKAYKDSKV-------CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269
G F G Y SK C L + G+ S+ PG I T
Sbjct: 144 GGRSFPGVLYYCISKAALDQFTRCTALELAPK--------GVRVNSVSPGVIVT 189
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 1e-07
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+TGAS G+G A A+ L + G +++ + + K T + DL+
Sbjct: 2 IILTGASRGIGRALAEELLKRGSPSVVVLLARSEEPLQELKEELRPGLRVTTVKADLSDA 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V Q ++ R+ D+L+ NA P +K + + N L+ LL
Sbjct: 62 AGVEQLLEAIRKLDGERDLLINNAGSLGPVSKIEFIDLDELQKYFDLNLTSPVCLTSTLL 121
Query: 168 DDLKQSDYPSKRLII 182
K+ K+ ++
Sbjct: 122 RAFKK--RGLKKTVV 134
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 40/135 (29%), Positives = 58/135 (42%), Gaps = 15/135 (11%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIM 100
L V+ITGAS G+G A A+A A G H+ + RD E A + +
Sbjct: 4 HLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVH 62
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA----AVYLPTAKEPTFTAEGFELSVGTNH 156
LDL+S ++ Q +D+LV NA L + + A G+EL V
Sbjct: 63 ALDLSSPEAREQLA----AEAGDIDILVNNAGAIPGGGLDDVDDAAWRA-GWELKV---- 113
Query: 157 LGHFLLSRLLLDDLK 171
G+ L+RL +K
Sbjct: 114 FGYIDLTRLAYPRMK 128
|
Length = 259 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 12/89 (13%)
Query: 49 IITGASSGLGLATAKALAETG-----KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
I+T + SG+G A A LA+ G WH D A+ A+ I LD
Sbjct: 6 IVTASDSGIGKACALLLAQQGFDIGITWH-----SDEEGAKETAEEVRSHGVRAEIRQLD 60
Query: 104 LASLDSVRQFVDTF-RRSGRPLDVLVCNA 131
L+ L Q +D +R GR +DVLV NA
Sbjct: 61 LSDLPEGAQALDKLIQRLGR-IDVLVNNA 88
|
Length = 256 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 102
V+ITGASSG+G A A+ A+ G +++ +A R D LKAE + + E L
Sbjct: 1 VLITGASSGIGRALAREFAKAG-YNVALAARRTDRLDELKAELLNPNPSVEVEI-----L 54
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
D+ + + + LD+++ NA V T+ E + TN LG +
Sbjct: 55 DVTDEERNQLVIAELEAELGGLDLVIINAGVGKGTSLGDLSFKAFRET-IDTNLLGAAAI 113
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITG 188
L + L+++ S+
Sbjct: 114 LEAALPQFRAKG--RGHLVLISSVAA 137
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK--AERAAKSAGMAKENYT 98
L +++TGASSG+G A A+ A G + +A R D L A+R ++ G A
Sbjct: 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAM---- 92
Query: 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
+ DL+ LD+V V + +D+L+ NA
Sbjct: 93 AVPCDLSDLDAVDALVADVEKRIGGVDILINNAG 126
|
Length = 293 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 45 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
KG V + TG +SGLGLAT + L G +I+ D + + + +D
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGAKVVIL---DLPNSPGETVAKLGDNCRFV--PVD 55
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLV-----CNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
+ S V+ + + LD++V AA + + E F+ + N +G
Sbjct: 56 VTSEKDVKAALALAKAKFGRLDIVVNCAGIAVAAKTYNKKGQQPHSLELFQRVINVNLIG 115
Query: 159 HFLLSRLL 166
F + RL
Sbjct: 116 TFNVIRLA 123
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 36/158 (22%), Positives = 70/158 (44%), Gaps = 18/158 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 103
++TG S G+G A A LAE G +++ ++ K++ AA A + + + + D
Sbjct: 1 ALVTGGSRGIGKAIALRLAERG-ADVVI---NYRKSKDAAAEVAAEIEELGGKAVVVRAD 56
Query: 104 LASLDSVRQFVDTFR-RSGRPLDVLVCNAA--VYLPTAKEPTFTAEGFELSVGTNHLGHF 160
++ V + + R GR LDVLV NAA + P ++ T ++ + TN
Sbjct: 57 VSQPQDVEEMFAAVKERFGR-LDVLVSNAAAGAFRPLSE---LTPAHWDAKMNTNLKALV 112
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
++ +++ R++ + S G+ L +
Sbjct: 113 HCAQQAAKLMRERGG--GRIVAISS-LGSIRALPNYLA 147
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG +SG+G A A+ A G + + R + A +A + N + D++
Sbjct: 18 AVVTGGASGIGHAIAELFAAKGA-RVALLDRS---EDVAEVAAQLLGGNAKGLVCDVSDS 73
Query: 108 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SV V GR +D+LV +A V A + E ++ ++ N G FL+++
Sbjct: 74 QSVEAAVAAVISAFGR-IDILVNSAGV-ALLAPAEDVSEEDWDKTIDINLKGSFLMAQ 129
|
Length = 255 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 15/145 (10%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
SV+ITG SSG+GL A L G + ++ ACR + A M +T + LDL
Sbjct: 4 SVLITGCSSGIGLEAALELKRRG-YRVLAACR------KPDDVARMNSLGFTGILLDLDD 56
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNA--AVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+SV + D + L L NA VY P + T + + E TN G L+
Sbjct: 57 PESVERAADEVIALTDNRLYGLFNNAGFGVYGPLS---TISRQQMEQQFSTNFFGTHQLT 113
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
LLL + + R+++ S+ G
Sbjct: 114 MLLLPAMLP--HGEGRIVMTSSVMG 136
|
Length = 256 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 4e-07
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 11/143 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VI+TGA+ G+G A A+ L + G ++A + + + LD+A
Sbjct: 1 VIVTGAAQGIGRAVARHLLQAG--ATVIA------LDLPFVLLLEYGDPLRLTPLDVADA 52
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+VR+ P+D LV A V P A +P + E +E + N G F L + +
Sbjct: 53 AAVREVCSRLLAEHGPIDALVNCAGVLRPGATDP-LSTEDWEQTFAVNVTGVFNLLQAVA 111
Query: 168 DDLKQSDYPSKRLIIVGSITGNT 190
+K D + ++ V S +
Sbjct: 112 PHMK--DRRTGAIVTVASNAAHV 132
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-07
Identities = 30/142 (21%), Positives = 60/142 (42%), Gaps = 6/142 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG SG+G A A+ G +I+ + E A + + D++
Sbjct: 2 VLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANNVRKAGGKVHYYK-CDVSKR 60
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLLSRLL 166
+ V + ++ + +L+ NA V + K+ E E + N L HF ++
Sbjct: 61 EEVYEAAKKIKKEVGDVTILINNAGV--VSGKKLLELPDEEIEKTFEVNTLAHFWTTKAF 118
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L D+ + ++ ++ + S+ G
Sbjct: 119 LPDMLERNHGH--IVTIASVAG 138
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-07
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGASSG+G ATA+ LA G + + A R K +A + LD+
Sbjct: 6 ALVTGASSGIGKATARRLAAQG--YTVYGA-----ARRVDKMEDLASLGVHPLSLDVTDE 58
Query: 108 DSVRQFVDT-FRRSGRPLDVLVCNA 131
S++ VDT GR +DVLV NA
Sbjct: 59 ASIKAAVDTIIAEEGR-IDVLVNNA 82
|
Length = 273 |
| >gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 38/112 (33%), Positives = 49/112 (43%), Gaps = 10/112 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+I GAS G+G + G W +I RD A AA A A+ + LD+A
Sbjct: 4 VLIVGASRGIGREFVRQYRADG-WRVIATARD--AAALAALQALGAE----ALALDVADP 56
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLG 158
SV ++ G LD V A VY P T T E F+ + TN LG
Sbjct: 57 ASVAGL--AWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLG 106
|
Length = 222 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 33/117 (28%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V +TGA+ G+G A A A E G +I + FL E + LD++
Sbjct: 11 VWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAFLTQEDYP---------FATFVLDVSDA 60
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+V Q PLDVLV A + L + + E ++ + N G F L R
Sbjct: 61 AAVAQVCQRLLAETGPLDVLVNAAGI-LRMGATDSLSDEDWQQTFAVNAGGAFNLFR 116
|
Length = 252 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 47/158 (29%), Positives = 73/158 (46%), Gaps = 23/158 (14%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 105
++TG S GLGL A+AL E G ++++ R + L+ A ++ G+ D+A
Sbjct: 16 LVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAA---DVA 71
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVY--LPTAKEPTFTAEGFELSVGTNHLGHFLL 162
+ + + T R G +D+LV NA P P E ++ + N G FLL
Sbjct: 72 DEADIERLAEETLERFG-HVDILVNNAGATWGAPAEDHPV---EAWDKVMNLNVRGLFLL 127
Query: 163 SRLLLDDLKQSDYPSK--RLIIVGSITGNTNTLAGNVP 198
S+ + K+S P R+I V S+ G L GN P
Sbjct: 128 SQAV---AKRSMIPRGYGRIINVASVAG----LGGNPP 158
|
Length = 259 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 7e-07
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAA-KSAGMAKENYTIMHLDLA 105
++TGASSGLG A+ LA+ G +++A R + LK RA ++ G A ++ LD+
Sbjct: 13 LVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAH---VVSLDVT 68
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS-- 163
S++ V +D+LV N+ V T K T F+ TN G F ++
Sbjct: 69 DYQSIKAAVAHAETEAGTIDILVNNSGVS-TTQKLVDVTPADFDFVFDTNTRGAFFVAQE 127
Query: 164 ---RLLLDDLKQSD-YPSKRLIIVGSITG 188
R++ + P R+I + S+ G
Sbjct: 128 VAKRMIARAKGAGNTKPGGRIINIASVAG 156
|
Length = 258 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 8e-07
Identities = 38/115 (33%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
IITG +SG+G ATA+ A+ G +I D A A + + + +H D+
Sbjct: 8 IITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVA---AELGDPDISFVHCDVTVEA 64
Query: 109 SVRQFVD-TFRRSGRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFL 161
VR VD R GR LD++ NA V P + E FE + N G FL
Sbjct: 65 DVRAAVDTAVARFGR-LDIMFNNAGVLGAPCYSILETSLEEFERVLDVNVYGAFL 118
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 8e-07
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 10/131 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHII----MACRDFLKAERAAKSAGMAKENYTIMHLD 103
VI+TG S G+G +A E G + A L++E G K + D
Sbjct: 12 VIVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCK----FVPCD 67
Query: 104 LASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
+ + ++ + T R GR +D LV NA + P +A+ F + N + +FL
Sbjct: 68 VTKEEDIKTLISVTVERFGR-IDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYFLA 126
Query: 163 SRLLLDDLKQS 173
S+ L L++S
Sbjct: 127 SKYALPHLRKS 137
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 9e-07
Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 13/152 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V++TGA+ G+G A A+ALAE G + A R+F + + LD+A
Sbjct: 1 VLVTGAAQGIGYAVARALAEAG--ARVAAVDRNFEQLLELVADLRRYGYPFATYKLDVAD 58
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+V + V R P+DVLV N A L + + E ++ + N G F +S+ +
Sbjct: 59 SAAVDEVVQRLEREYGPIDVLV-NVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQAV 117
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
+K+ S ++ VGS N A NVP
Sbjct: 118 SPRMKRRR--SGAIVTVGS---N----AANVP 140
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-07
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VIITG SSG+G A AK AE G ++++ R K E A + +D+ +
Sbjct: 4 VIITGGSSGMGKAMAKRFAEEG-ANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNP 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAA 132
+ V++ V+ +D L+ NAA
Sbjct: 63 EDVQKMVEQIDEKFGRIDALINNAA 87
|
Length = 252 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 38/137 (27%), Positives = 53/137 (38%), Gaps = 8/137 (5%)
Query: 28 ASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87
AS A SP + V ITG + G+G A A A G +++ RD AE A
Sbjct: 256 ASTAQA-PSPLAE---SPRVVAITGGARGIGRAVADRFAAAG-DRLLIIDRD---AEGAK 307
Query: 88 KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG 147
K A + + + D+ +V + LDVLV NA + +AE
Sbjct: 308 KLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAED 367
Query: 148 FELSVGTNHLGHFLLSR 164
F N G F +R
Sbjct: 368 FTRVYDVNLSGAFACAR 384
|
Length = 520 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 9/148 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHII-----MACRDFLKAERAAKSAGMAKENYTIMHL 102
V+ITG S GLG A A LA G I+ M R A A A K +
Sbjct: 9 VLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGK--ALGLAF 66
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
D+ + R +D LD+LV NA + A + E ++ + N G F +
Sbjct: 67 DVRDFAATRAALDAGVEEFGRLDILVNNAGIA-TDAAFAELSIEEWDDVIDVNLDGFFNV 125
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNT 190
++ L + ++ R++ + S+ G
Sbjct: 126 TQAALPPMIRAR-RGGRIVNIASVAGVR 152
|
Length = 249 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 102
G+ +ITG GLG A A+ LAE G +++ R A AA + T++
Sbjct: 1 GTYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGAAALLAELEAAGARVTVVAC 60
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
D+A D++ + PL ++ +AA
Sbjct: 61 DVADRDALAAVLAAIPAVEGPLTGVI-HAA 89
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
L+ ++TGA+SG+G A A+ G +++A D +K RA +A + L
Sbjct: 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIA--D-IKPARARLAALEIGPAAIAVSL 59
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 134
D+ DS+ + V +D+L NAA++
Sbjct: 60 DVTRQDSIDRIVAAAVERFGGIDILFNNAALF 91
|
Length = 257 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 41/143 (28%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 48 VIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V+ITG SGLGLATA LA+ G K ++ + L+A +AA ++ D++
Sbjct: 6 VLITGGGSGLGLATAVRLAKEGAKLSLVDLNEEGLEAAKAALLEIAPDAEVLLIKADVSD 65
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
V +VD T + GR +D NA + F A+ F+ V N G F
Sbjct: 66 EAQVEAYVDATVEQFGR-IDGFFNNAGIEGKQNLTEDFGADEFDKVVSINLRGVFYGLEK 124
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
+L +++ S ++ S+ G
Sbjct: 125 VLKVMREQG--SGMIVNTASVGG 145
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 40/152 (26%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA++G G + + G H ++A + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG--HKVIATGR--RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA--EGFELSVGTNHLGHFLLSRL 165
++ + + + R +DVLV NA + L EP A E +E + TN+ G ++R
Sbjct: 59 AAIEEMLASLPAEWRNIDVLVNNAGLAL--GLEPAHKASVEDWETMIDTNNKGLVYMTRA 116
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+L + + ++ +I +GS G+ GNV
Sbjct: 117 VLPGMVERNH--GHIINIGSTAGSWPYAGGNV 146
|
Length = 248 |
| >gnl|CDD|168204 PRK05717, PRK05717, oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGA+ G+GL A L G W +++A D ER +K A EN + +D+A
Sbjct: 14 LVTGAARGIGLGIAAWLIAEG-WQVVLADLD---RERGSKVAKALGENAWFIAMDVADEA 69
Query: 109 SVRQFV-DTFRRSGRPLDVLVCNAAVYLP 136
V V + + GR LD LVCNAA+ P
Sbjct: 70 QVAAGVAEVLGQFGR-LDALVCNAAIADP 97
|
Length = 255 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGAS GLG A A++ A G ++ R AE A AG E + D+
Sbjct: 3 VLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAG---ERAIAIQADVRDR 59
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
D V+ ++ + P+D +V NA
Sbjct: 60 DQVQAMIEEAKNHFGPVDTIVNNA 83
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 41/145 (28%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDLA 105
++TG++ GLG A+ALA G H+++ R+ E A ++AG A E + D+A
Sbjct: 15 LVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAE---ALAFDIA 70
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAV--YLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++V LD+LV N P A+ + T+ + LLS
Sbjct: 71 DEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAE---LDDAAIRALLETDLVAPILLS 127
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
RL +K+ Y R+I + SI G
Sbjct: 128 RLAAQRMKRQGY--GRIIAITSIAG 150
|
Length = 256 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 1/124 (0%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TGAS G+G A A+ LA G + A+ A + D+A
Sbjct: 9 IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAA 68
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
+V + D + +DVLV NA V +P F E F+ ++ TN G F++ R
Sbjct: 69 AVTRLFDAAETAFGRIDVLVNNAGV-MPLGTIADFDLEDFDRTIATNLRGAFVVLREAAR 127
Query: 169 DLKQ 172
L Q
Sbjct: 128 HLGQ 131
|
Length = 245 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 6/124 (4%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TGA SG G A+ A+ G +I + A+ A + A E + D+
Sbjct: 9 IVTGAGSGFGEGIARRFAQEGARVVIAD----INADGAERVAADIGEAAIAIQADVTKRA 64
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V V+ LD+LV NA + + E F+ N +L ++ L+
Sbjct: 65 DVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEV-DEEEFDRVFAVNVKSIYLSAQALV 123
Query: 168 DDLK 171
++
Sbjct: 124 PHME 127
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-06
Identities = 40/156 (25%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
L + +ITGAS G+GLA A+ G +++ RD +A +
Sbjct: 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHG 64
Query: 102 L--DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159
L D++ + R +D L +LV NA + +T + + TN
Sbjct: 65 LAADVSDDEDRRAILDWVEDHWDGLHILVNNAGGNI-RKAAIDYTEDEWRGIFETNLFSA 123
Query: 160 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195
F LSR LKQ S ++ +GS++G T+ +G
Sbjct: 124 FELSRYAHPLLKQHA--SSAIVNIGSVSGLTHVRSG 157
|
Length = 257 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHL-- 102
G+ ++TG GLGL A+ LAE G H+++ R E A A + + +
Sbjct: 1 GTYLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVAC 60
Query: 103 DLASLDSVRQFVDTFRRSGRPLD 125
D++ D+VR + R G PL
Sbjct: 61 DVSDRDAVRALLAEIRADGPPLR 83
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL---DL 104
++TG + GLG A A+A AE G +++ R+ AE+ A + DL
Sbjct: 9 ALVTGGTQGLGAAIARAFAERGAAGLVICGRN---AEKGEAQAAELEALGAKAVFVQADL 65
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAA 132
+ ++ R+ V GR LD LV NAA
Sbjct: 66 SDVEDCRRVVAAADEAFGR-LDALV-NAA 92
|
Length = 260 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
V++TGA SG+G TA A A G ++ + D AER A+ +AG Y +D+
Sbjct: 318 VVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYR---VDV 373
Query: 105 ASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 133
+ D++ F + R G P D++V NA +
Sbjct: 374 SDADAMEAFAEWVRAEHGVP-DIVVNNAGI 402
|
Length = 582 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 32/94 (34%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYT 98
L + ++TG+S G+G TAK LA G H+++ R KA RA K + +
Sbjct: 3 DLPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQ--KAPRANKVVAEIEAAGGRAS 59
Query: 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
+ DL +SV +DT R LD LV NA+
Sbjct: 60 AVGADLTDEESVAALMDTAREEFGGLDALVLNAS 93
|
Length = 248 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIM---ACRDFLKAERAAKSAGMAKENYTIMHLDL 104
I+TG S G+GLA A+ALAE G I+ A R KAE AK G+ + Y D+
Sbjct: 11 AIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVKTKAYKC---DV 67
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+S +SV + ++ +D+L+ NA + + +T E + + N G F ++
Sbjct: 68 SSQESVEKTFKQIQKDFGKIDILIANAGITVHKPAL-DYTYEQWNKVIDVNLNGVFNCAQ 126
Query: 165 LLLDDLKQSDYPSKRLIIVGSITG 188
K+ S LII S++G
Sbjct: 127 AAAKIFKKQGKGS--LIITASMSG 148
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 5e-06
Identities = 38/143 (26%), Positives = 57/143 (39%), Gaps = 32/143 (22%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLAS 106
++ITGA+SG+G ATA+ L + G I + R+ + A DL++
Sbjct: 2 IVITGAASGIGAATAELLEDAGHTVIGIDLREADVIA-------------------DLST 42
Query: 107 LDSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + D R LD LV A V T L + N+ G L
Sbjct: 43 PEGRAAAIADVLARCSGVLDGLVNCAGVGGTT---------VAGLVLKVNYFGLRALMEA 93
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
LL L++ P ++V SI G
Sbjct: 94 LLPRLRKGHGP--AAVVVSSIAG 114
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 32/131 (24%), Positives = 51/131 (38%), Gaps = 10/131 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG SG+G A + G ++ AE+ A ++ ++ D+ S
Sbjct: 9 ALITGGGSGIGRALVERFLAEGARVAVLE----RSAEKLASLRQRFGDHVLVVEGDVTSY 64
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAV---YLPTAKEPTFT-AEGFELSVGTNHLGHFLL 162
++ VD T G+ LD V NA + P T F+ N G+ L
Sbjct: 65 ADNQRAVDQTVDAFGK-LDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLG 123
Query: 163 SRLLLDDLKQS 173
++ L LK S
Sbjct: 124 AKAALPALKAS 134
|
Length = 263 |
| >gnl|CDD|235914 PRK07041, PRK07041, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++ G SSG+GLA A+A A G + +A R + AA++ G T LD+
Sbjct: 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALGGGAPVRTAA-LDITDEA 58
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+V F F +G P D +V AA P + ++ + G + ++R
Sbjct: 59 AVDAF---FAEAG-PFDHVVITAAD-TPGGPVRALPLAAAQAAMDSKFWGAYRVAR 109
|
Length = 230 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 38/149 (25%), Positives = 61/149 (40%), Gaps = 12/149 (8%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY--- 97
K + + V+ITGAS+G+G ATA+A A G +++ R E ++
Sbjct: 4 KPIGRQVVVITGASAGVGRATARAFARRG-AKVVLLARG----EEGLEALAAEIRAAGGE 58
Query: 98 -TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 156
+ D+A ++V+ D P+D V NA V + T E F +
Sbjct: 59 ALAVVADVADAEAVQAAADRAEEELGPIDTWVNNAMVTV-FGPFEDVTPEEFRRVTEVTY 117
Query: 157 LGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185
LG + L ++ D +I VGS
Sbjct: 118 LGVVHGTLAALRHMRPRDR--GAIIQVGS 144
|
Length = 334 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-06
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
G V ++TGAS G+G A AK LA G ++ AE A + D
Sbjct: 2 AGKVALVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAAGGKAIAVQAD 61
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++ V + D ++ +D+LV NA V L T + E F+ N G F +
Sbjct: 62 VSDPSQVARLFDAAEKAFGGVDILVNNAGVMLKKPIAET-SEEEFDRMFTVNTKGAFFVL 120
Query: 164 R 164
+
Sbjct: 121 Q 121
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 7e-06
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLAS 106
++TG++SG+GL A+ALA G ++ D + E AK +++ DL+
Sbjct: 6 LVTGSTSGIGLGIARALAAAGANIVLNGFGDAAEIEAVRAGL-AAKHGVKVLYHGADLSK 64
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
++ V +R +D+LV NA + A F E ++ + N F +RL
Sbjct: 65 PAAIEDMVAYAQRQFGGVDILVNNAGIQH-VAPIEDFPTEKWDAIIALNLSAVFHTTRLA 123
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L +K+ + R+I + S+ G
Sbjct: 124 LPHMKKQGW--GRIINIASVHG 143
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 34/146 (23%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT---IMHLDL 104
++ITGA+ +G A KAL G +I+A + E+ + + + LD+
Sbjct: 5 ILITGAAGLIGKAFCKALLSAGA-RLILADINAPALEQLKEE--LTNLYKNRVIALELDI 61
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 162
S +S+++ ++++ +D+L+ NA F E + + N G FL
Sbjct: 62 TSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVNLGGAFLC 121
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITG 188
S+ + K+ S +I + SI G
Sbjct: 122 SQAFIKLFKKQGKGS--IINIASIYG 145
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 9e-06
Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 15/166 (9%)
Query: 43 LRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYT 98
L +I +TGAS G+G A A G +I+ R+ K + A G + +
Sbjct: 1 LLNDRIILVTGASDGIGREAALTYARYGA-TVILLGRNEEKLRQVADHINEEGGRQPQWF 59
Query: 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
I+ L + ++ +Q + LD ++ NA + + ++ N
Sbjct: 60 ILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVNA 119
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204
F+L++ LL L +SD S L+ S G +AN G
Sbjct: 120 TFMLTQALLPLLLKSDAGS--LVFTSSSVGRQ--------GRANWG 155
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 43/169 (25%), Positives = 64/169 (37%), Gaps = 32/169 (18%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++ G LG LAE G + + +A D + +E+AA A Y
Sbjct: 5 AVVIGGGQTLGAFLCHGLAEEG-YRVAVA--D-INSEKAANVAQEINAEYGEGMAYGFGA 60
Query: 108 DS---------VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
D+ R + F R +D+LV NA + A F F+ S+ N +G
Sbjct: 61 DATSEQSVLALSRGVDEIFGR----VDLLVYNAGI-AKAAFITDFQLGDFDRSLQVNLVG 115
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITGN---TNTLAGNVPPKANLG 204
+FL +R RL+I I G N+ +G V K N G
Sbjct: 116 YFLCAR-----------EFSRLMIRDGIQGRIIQINSKSGKVGSKHNSG 153
|
Length = 259 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 6/131 (4%)
Query: 10 QREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETG 69
+ E + R G + A A + G+ +ITG GLGL A+ LA G
Sbjct: 117 EDELALRGGQRLVPRLVRAPAAALELAAAPG--GLDGTYLITGGLGGLGLLVARWLAARG 174
Query: 70 KWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLASLDSVRQFVDTFRRSGRPLDVL 127
H+++ R AA++A + + + D+ ++ + G PL
Sbjct: 175 ARHLVLLSRRGPAPRAAARAALLRAGGARVSVVRCDVTDPAALAALLAELAA-GGPLA-G 232
Query: 128 VCNAAVYLPTA 138
V +AA L A
Sbjct: 233 VIHAAGVLRDA 243
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 3/127 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI-MHLDLAS 106
++TGA+ +G A A+ALA G +++ + K A N + + DL+
Sbjct: 3 ALVTGAAKRIGRAIAEALAAEGY-RVVVHYNRSEAEAQRLKDELNALRNSAVLVQADLSD 61
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ V R+ DVLV NA+ + PT EL G N +LL +
Sbjct: 62 FAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAEL-FGINLKAPYLLIQAF 120
Query: 167 LDDLKQS 173
L S
Sbjct: 121 ARRLAGS 127
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 48/194 (24%), Positives = 67/194 (34%), Gaps = 30/194 (15%)
Query: 30 PAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC----RDFLKAER 85
P S +G L+ +ITG SG+G A A A A G + + D AE
Sbjct: 11 PDFGEKSYKGSGKLKGKKALITGGDSGIGRAVAIAFAREGA-DVAINYLPEEED--DAEE 67
Query: 86 AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 145
K ++ DL R V + LD+LV NAA P T
Sbjct: 68 TKKLIEEEGRKCLLIPGDLGDESFCRDLVKEVVKEFGKLDILVNNAAYQHPQESIEDITT 127
Query: 146 EGFELSVGTNHLGHFLLSRLLLDDLKQS-------------------DYPSKRLIIVGSI 186
E E + TN F L++ L LK+ DY + + G+I
Sbjct: 128 EQLEKTFRTNIFSMFYLTKAALPHLKKGSSIINTTSVTAYKGSPHLLDYAATK----GAI 183
Query: 187 TGNTNTLAGNVPPK 200
T L+ + K
Sbjct: 184 VAFTRGLSLQLAEK 197
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 2/122 (1%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
L +ITGAS+G+G A A E G + +A R E+ A G + +
Sbjct: 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCC 65
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
D++ V +D +D+ VCNA + + E F+ TN G FL
Sbjct: 66 DVSQHQQVTSMLDQVTAELGGIDIAVCNAGI-ITVTPMLDMPLEEFQRLQNTNVTGVFLT 124
Query: 163 SR 164
++
Sbjct: 125 AQ 126
|
Length = 253 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGA GLG A A A AE G +++A R + + A+ A ++ DLA +
Sbjct: 14 VVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPE 72
Query: 109 SVRQFVDT-FRRSGRPLDVLVCNAAVYLPTA---KEPTFTAEGFELSVGTNH 156
+ GR LD++V N +P A+ F +V T H
Sbjct: 73 ATAGLAGQAVEAFGR-LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAH 123
|
Length = 263 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TG ++ +G A A+AL G + + D A S G E + D+
Sbjct: 10 IVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG---ERARFIATDITDDA 65
Query: 109 SVRQFV-DTFRRSGRPLDVLVCNAAVYL 135
++ + V R GR +D+LV A YL
Sbjct: 66 AIERAVATVVARFGR-VDILVNLACTYL 92
|
Length = 261 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 39/119 (32%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
V+ITGAS G+G ATA A G W + I RD AE A + A ++ D+A
Sbjct: 4 VVLITGASRGIGRATAVLAAARG-WSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA 62
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ V D + + LD LV NA + P+ A TN LG +L +R
Sbjct: 63 NEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAR 121
|
Length = 248 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 19 VVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 78
VVR A A+P D P K ++TGA+ G+G A A+ LA G H++ C
Sbjct: 190 VVRVGA-ADAAPPADWDRPLAGKV-----ALVTGAARGIGAAIAEVLARDGA-HVV--CL 240
Query: 79 DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
D + A A +A + T + LD+ + D+ + + LD++V NA
Sbjct: 241 D-VPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDIVVHNA 292
|
Length = 450 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TGA+ G+G A A+ALA G +++A + AER AK + +D++ D
Sbjct: 10 IVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPD 68
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVY 134
S + D + +D LV NAA+Y
Sbjct: 69 SAKAMADATVSAFGGIDYLVNNAAIY 94
|
Length = 250 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 101
+ITG + +G A A+ L G + + + D L AE A G A +
Sbjct: 9 ALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSA----AALQ 63
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
DL D++ + V GR LD LV NA+ + PT + T ++ +N F
Sbjct: 64 ADLLDPDALPELVAACVAAFGR-LDALVNNASSFYPTPLG-SITEAQWDDLFASNLKAPF 121
Query: 161 LLSRLLLDDLKQS 173
LS+ L++
Sbjct: 122 FLSQAAAPQLRKQ 134
|
Length = 249 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 11/118 (9%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
SV++TGASSG+G A A ALA+ G ++ A R+ +R A G + LD+
Sbjct: 11 SVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGC-----EPLRLDVGD 64
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++R + D LV A + TAEGF+ + N G L++R
Sbjct: 65 DAAIRAALAAA----GAFDGLVNCAGIAS-LESALDMTAEGFDRVMAVNARGAALVAR 117
|
Length = 245 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-05
Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 8/128 (6%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA----KSAGMAKEN 96
KTL + +TG + G+G TA+ LA G H+++A + AE A G +
Sbjct: 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRA- 467
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 156
+ +D+ +V+ + +D++V NA + + E T T + ++L++
Sbjct: 468 -VALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEET-TLQEWQLNLDILA 525
Query: 157 LGHFLLSR 164
G+FL++R
Sbjct: 526 TGYFLVAR 533
|
Length = 676 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-05
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 16/124 (12%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--------SAGMAKENYTIM 100
++TG S G+G ATA LA+ G + + + ++ + AA+ + G A ++
Sbjct: 5 LVTGGSRGIGRATALLLAQEG-YTVAV---NYQQNLHAAQEVVNLITQAGGKA----FVL 56
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
D++ + V + PL LV NA + TAE + TN G+F
Sbjct: 57 QADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116
Query: 161 LLSR 164
L R
Sbjct: 117 LCCR 120
|
Length = 247 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 22/157 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
+ITG + LG A A+ALA+ G + R+ K ++ AK + G LD
Sbjct: 8 AVITGGTGVLGGAMARALAQAGAKVAALG-RNQEKGDKVAKEITALGGRAIALAADVLDR 66
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----------KEPTF---TAEGFELS 151
ASL+ R+ + + G D+L+ A P A E F EG+E
Sbjct: 67 ASLERARE--EIVAQFGTV-DILINGAGGNHPDATTDPEHYEPETEQNFFDLDEEGWEFV 123
Query: 152 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
N G FL S++ D+ + S +I + S+
Sbjct: 124 FDLNLNGSFLPSQVFGKDMLEQKGGS--IINISSMNA 158
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-05
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 2/85 (2%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
+ITGA G+G A+ A G I++ + E+ A T + D+
Sbjct: 10 LITGALQGIGEGIARVFARHGANLILLDISP--EIEKLADELCGRGHRCTAVVADVRDPA 67
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAV 133
SV + + +D+LV NA V
Sbjct: 68 SVAAAIKRAKEKEGRIDILVNNAGV 92
|
Length = 263 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-05
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDL 104
+ITG SGLG A + G A L AE+ A+ + + D+
Sbjct: 6 VALITGGGSGLGRALVERFVAEG------AKVAVLDRSAEKVAELRADFGDAVVGVEGDV 59
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY-----LPTAKEPTFTAEGFELSVGTNHLG 158
SL + V R G+ LD + NA ++ L E E F+ N G
Sbjct: 60 RSLADNERAVARCVERFGK-LDCFIGNAGIWDYSTSLVDIPEEKL-DEAFDELFHINVKG 117
Query: 159 HFLLSRLLLDDLKQS 173
+ L ++ L L +
Sbjct: 118 YILGAKAALPALYAT 132
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 4e-05
Identities = 45/151 (29%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAE--RAAK 88
+L ++ ITGAS G+GLA A A G +I A AE AA
Sbjct: 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAG 61
Query: 89 SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA-AVYL-PTAKEPTFTA 145
+ + D+ D V V R G +D+ V NA A+ L T P
Sbjct: 62 GQALP------LVGDVRDEDQVAAAVAKAVERFGG-IDICVNNASAINLTGTEDTP---M 111
Query: 146 EGFELSVGTNHLGHFLLSRLLLDDLKQSDYP 176
+ F+L N G FL+S+ L LK+S+ P
Sbjct: 112 KRFDLMQQINVRGTFLVSQACLPHLKKSENP 142
|
Length = 273 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 12/136 (8%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIM 100
KG V ++TGASSG+G A A LA G ++++ R K + A + K +
Sbjct: 2 KGKVALVTGASSGIGKAIAIRLATAGA-NVVVNYRS--KEDAAEEVVEEIKAVGGKAIAV 58
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLG 158
D++ + V + + LD+LV NA + + T E + + N G
Sbjct: 59 QADVSKEEDVVALFQSAIKEFGTLDILVNNAGL---QGDASSHEMTLEDWNKVIDVNLTG 115
Query: 159 HFLLSRLLLDDLKQSD 174
FL +R + ++S
Sbjct: 116 QFLCAREAIKRFRKSK 131
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 14/131 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI--MHLDLA 105
++TGA G+G AT KALA+ G + + + A + +E I + +DL+
Sbjct: 10 ALVTGAGKGIGRATVKALAKAGARVVAV-------SRTQADLDSLVRECPGIEPVCVDLS 62
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
D+ + + S P+D+LV NAAV + T E F+ S N +S++
Sbjct: 63 DWDATEEALG----SVGPVDLLVNNAAVAILQPFL-EVTKEAFDRSFDVNVRAVIHVSQI 117
Query: 166 LLDDLKQSDYP 176
+ + P
Sbjct: 118 VARGMIARGVP 128
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 11/146 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 105
V++TG S G+G A+ E G II A KAE A +A + + DL+
Sbjct: 9 VLVTGGSRGIGRMIAQGFLEAGARVIISA----RKAEACADAAEELSAYGECIAIPADLS 64
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
S + + V LDVLV NA E F G++ + N F L++
Sbjct: 65 SEEGIEALVARVAERSDRLDVLVNNAGATWGAPLE-AFPESGWDKVMDINVKSVFFLTQA 123
Query: 166 LLDDLKQS---DYPSKRLIIVGSITG 188
LL L+ + + P+ R+I +GSI G
Sbjct: 124 LLPLLRAAATAENPA-RVINIGSIAG 148
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-05
Identities = 37/87 (42%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TGA SG+G ATAK A G +++A RD AER A +A A D+ S
Sbjct: 8 AIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVA-AAIAAGGRAFARQGDVGSA 65
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAV 133
++V VD R GR LDVLV NA
Sbjct: 66 EAVEALVDFVAARWGR-LDVLVNNAGF 91
|
Length = 252 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-05
Identities = 41/143 (28%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VIITG S GLG A A L E G H+I R + + K A N T LDL +
Sbjct: 4 VIITGTSQGLGEAIANQLLEKGT-HVISISRT--ENKELTKLAEQYNSNLTFHSLDLQDV 60
Query: 108 DSVRQFVDTFRRSGRPLDV----LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+ + S + +V L+ NA + P +E +V N L +L+
Sbjct: 61 HELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILT 120
Query: 164 RLLLDDLKQSDYP-SKRLIIVGS 185
+ K D+ KR+I + S
Sbjct: 121 STFMKHTK--DWKVDKRVINISS 141
|
Length = 251 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 7e-05
Identities = 33/145 (22%), Positives = 57/145 (39%), Gaps = 8/145 (5%)
Query: 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
K + ++TGA+ G+G A A+ G ++ D A + G + + DL
Sbjct: 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDL 58
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
S+ + P+DVLV NA + T T + N +L
Sbjct: 59 TDAASLAAALANAAAERGPVDVLVANAGAARAASLHDT-TPASWRADNALNLEAAYLCVE 117
Query: 165 LLLDD-LKQSDYPSKRLIIVGSITG 188
+L+ LK+S ++ +GS+ G
Sbjct: 118 AVLEGMLKRS---RGAVVNIGSVNG 139
|
Length = 257 |
| >gnl|CDD|212497 cd11731, Lin1944_like_SDR_c, Lin1944 and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 8e-05
Identities = 34/140 (24%), Positives = 52/140 (37%), Gaps = 33/140 (23%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+ GA+ +GLA A+ L+ G +I A R S+G +D+
Sbjct: 1 IIVIGATGTIGLAVAQLLSAHGH-EVITAGR----------SSG-------DYQVDITDE 42
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
S++ F + G D +V A A T F+ + + LG L R L
Sbjct: 43 ASIKAL---FEKVG-HFDAIVSTAGD-AEFAPLAELTDADFQRGLNSKLLGQINLVRHGL 97
Query: 168 DDLKQSDYPSKRLIIVGSIT 187
Y + GSIT
Sbjct: 98 ------PYLNDG----GSIT 107
|
Lin1944 protein from Listeria Innocua is a classical SDR, it contains a glycine-rich motif similar to the canonical motif of the SDR NAD(P)-binding site. However, the typical SDR active site residues are absent in this subgroup of proteins of undetermined function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 198 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMH 101
KG + +ITGAS G+G A AKA A+ G + L K A + G+ Y
Sbjct: 9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYV--- 65
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGH 159
D+ D V+ V + +D+LV NA + + P +AE F + +
Sbjct: 66 CDVTDEDGVQAMVSQIEKEVGVIDILVNNAGI---IKRIPMLEMSAEDFRQVIDIDLNAP 122
Query: 160 FLLSRLLL 167
F++S+ ++
Sbjct: 123 FIVSKAVI 130
|
Length = 265 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 9/150 (6%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAA-KSAGMAKENYTIM 100
R ++TGAS G+G A A+AL + G + A R D ++A A +SAG
Sbjct: 4 WRGRVALVTGASVGIGAAVARALVQHGMKVVGCARRVDKIEALAAECQSAG--YPTLFPY 61
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 158
DL++ + + R + +DV + NA + P EP + EG++ N L
Sbjct: 62 QCDLSNEEQILSMFSAIRTQHQGVDVCINNAGLARP---EPLLSGKTEGWKEMFDVNVLA 118
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+ +R +K+ + +I + S++G
Sbjct: 119 LSICTREAYQSMKERNVDDGHIININSMSG 148
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG G+GL A+ALA G I D + + D+A L
Sbjct: 6 LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLS 65
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAV 133
+ +D + + +D LV NA V
Sbjct: 66 AHEAMLDAAQAAWGRIDCLVNNAGV 90
|
Length = 256 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 40/115 (34%), Positives = 56/115 (48%), Gaps = 12/115 (10%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLA-- 105
++TGASSG+G ATA+ALA G I A R D L+A A K ++ LD+
Sbjct: 7 LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAEGGKA--LVLELDVTDE 64
Query: 106 --SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
+V + V+ R LD+LV NA + L E T + + + TN LG
Sbjct: 65 QQVDAAVERTVEALGR----LDILVNNAGIMLLGPVEDADTTD-WTRMIDTNLLG 114
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 1e-04
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 17/147 (11%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS----AGMAKENYTIMHLDL 104
++TGA G+G A A+ L G + +I + AK G ++ + LD+
Sbjct: 6 LVTGAKRGIGSAIARELLNDG-YRVIAT---YFSGNDCAKDWFEEYGFTEDQVRLKELDV 61
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 161
+ + + P+D+LV NA + ++ F + + + + TN F
Sbjct: 62 TDTEECAEALAEIEEEEGPVDILVNNAGI----TRDSVFKRMSHQEWNDVINTNLNSVFN 117
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITG 188
+++ L + + Y R+I + S+ G
Sbjct: 118 VTQPLFAAMCEQGY--GRIINISSVNG 142
|
Length = 245 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 32/143 (22%), Positives = 60/143 (41%), Gaps = 14/143 (9%)
Query: 33 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 92
S QGK + +ITGA G+G A A ALA+ G ++ + R + A+
Sbjct: 1 MAQSLQGK------NALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEA 53
Query: 93 AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFE 149
I D++ + V ++ + +D+L+ NA + +K F +E
Sbjct: 54 YGVKVVIATADVSDYEEVTAAIEQLKNELGSIDILINNAGI----SKFGKFLELDPAEWE 109
Query: 150 LSVGTNHLGHFLLSRLLLDDLKQ 172
+ N +G + +R +L + +
Sbjct: 110 KIIQVNLMGVYYATRAVLPSMIE 132
|
Length = 239 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHL--D 103
+IITGAS G+G ATA AE G C ++L+ AA++ + ++ + + D
Sbjct: 5 MIITGASRGIGAATALLAAERG----YAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAAD 60
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+A V + + R LD LV NA + + A TN +G FL +
Sbjct: 61 VADEADVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCA 120
Query: 164 R 164
R
Sbjct: 121 R 121
|
Length = 248 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 36 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 95
S +GK L +TGA++GLG A LAE G I+ A R E + + +
Sbjct: 2 SLEGKVAL------VTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPS-ETQQQVEALGRR 53
Query: 96 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133
++ DL+ +++++ VD+ +D+LV NA +
Sbjct: 54 FLSLT-ADLSDIEAIKALVDSAVEEFGHIDILVNNAGI 90
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 2e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
++ ITGA+SG+G TA A G W + + D + AA +A + EN LD+
Sbjct: 2 AIFITGAASGIGRETALLFARNG-WFVGLYDID--EDGLAALAAELGAENVVAGALDVTD 58
Query: 107 LDSVRQFVDTF-RRSGRPLDVLVCNAAV 133
+ + F +G LD L NA V
Sbjct: 59 RAAWAAALADFAAATGGRLDALFNNAGV 86
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 18/124 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+TG SSG+GLA K L G + D + ENY + D++S
Sbjct: 12 IIVTGGSSGIGLAIVKELLANG---ANVVNADIHGGDGQH-------ENYQFVPTDVSSA 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEP----TFTAEGFELSVGTNHLGH 159
+ V V +D LV NA + +P K+P F+ N G
Sbjct: 62 EEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGV 121
Query: 160 FLLS 163
FL+S
Sbjct: 122 FLMS 125
|
Length = 266 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 36/121 (29%), Positives = 49/121 (40%), Gaps = 9/121 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++ GASSG+G ATA LA G + + + R K E LD+
Sbjct: 13 ALVAGASSGIGAATAIELAAAG-FPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDP 71
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAA-VYLPTAKEPTFTAEGFELS-----VGTNHLGHFL 161
DSV+ FV + ++VLV A Y E + E FE VG N L +
Sbjct: 72 DSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHE--ISTEQFESQVQIHLVGANRLATAV 129
Query: 162 L 162
L
Sbjct: 130 L 130
|
Length = 274 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++ G +SG+ L A+A A G ++ +A R K + A A + D+
Sbjct: 12 VVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDY 70
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAA 132
+V P+DVLV AA
Sbjct: 71 AAVEAAFAQIADEFGPIDVLVSGAA 95
|
Length = 264 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 105
V ITGASSG+G A A+ A G + + R D L+A A Y D+
Sbjct: 5 VFITGASSGIGQALAREYARQG-ATLGLVARRTDALQAFAARLPKAARVSVYA---ADVR 60
Query: 106 SLDSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG 158
D++ F G P DV++ NA + + T E F + TN+ G
Sbjct: 61 DADALAAAAADFIAAHGLP-DVVIANAGISVGTLTEEREDLAVFREVMDTNYFG 113
|
Length = 257 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
+ITG SG+GLATA+ LA G +++ D + AA G + D+ D
Sbjct: 11 VITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGG-----LFVPTDVTDED 64
Query: 109 SVRQFVDT-FRRSGRPLDVLVCNAAVYLP 136
+V DT G +D+ NA + P
Sbjct: 65 AVNALFDTAAETYGS-VDIAFNNAGISPP 92
|
Length = 255 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 7/143 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG SG G AK L G + ++ C A + + + + LD+
Sbjct: 3 VLITGCDSGFGNLLAKKLDSLG-FTVLAGCLT-KNGPGAKELRRVCSDRLRTLQLDVTKP 60
Query: 108 DSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ +++ + + L LV NA + E + + + N G +++
Sbjct: 61 EQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGTVEVTKA 120
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
L L+++ R++ V S+ G
Sbjct: 121 FLPLLRRA---KGRVVNVSSMGG 140
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 31/117 (26%), Positives = 47/117 (40%), Gaps = 1/117 (0%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG S+GLG A A + +I D +A A+ A + D+
Sbjct: 10 VVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVE 69
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V + T + LDV++ NA + + E + + TN G FL SR
Sbjct: 70 SDVVNLIQTAVKEFGTLDVMINNAGIENAVPSH-EMSLEDWNKVINTNLTGAFLGSR 125
|
Length = 261 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGA G+G A AK L E G + + + + A+ AA + D++ D
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRD 64
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 155
V V + L+V+V NA V PT T T E F+ N
Sbjct: 65 QVFAAVRQVVDTFGDLNVVVNNAGV-APTTPIETITEEQFDKVYNIN 110
|
Length = 256 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 44/156 (28%), Positives = 67/156 (42%), Gaps = 26/156 (16%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 101
VI+TG +SG+G A + LAE G +I R+A A+E +
Sbjct: 10 VIVTGGASGIGAAISLRLAEEGAIPVIFG--------RSAPDDEFAEELRALQPRAEFVQ 61
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
+DL R V+ T + GR +D LV NA V E E F S+ N + ++
Sbjct: 62 VDLTDDAQCRDAVEQTVAKFGR-IDGLVNNAGVNDGVGLEA--GREAFVASLERNLIHYY 118
Query: 161 LLSRLLLDDLKQSDYPSKRLII-VGS---ITGNTNT 192
+++ L LK S+ I+ + S +TG T
Sbjct: 119 VMAHYCLPHLKA----SRGAIVNISSKTALTGQGGT 150
|
Length = 258 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 5e-04
Identities = 33/147 (22%), Positives = 63/147 (42%), Gaps = 3/147 (2%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
L + ++TGA+SG+G A LA G + +A + A A A +
Sbjct: 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVA 62
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+D+ + D+V +D +D+LV NA + + E ++ ++ + G FL
Sbjct: 63 MDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIE-NYSFADWKKMQAIHVDGAFL 121
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITG 188
++ L + + D +I +GS+
Sbjct: 122 TTKAALKHMYKDDR-GGVVIYMGSVHS 147
|
Length = 262 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA-AKSAGMAKENYTIMHL 102
G V I+TG ++GLG A ALA+ G II R + G T + +
Sbjct: 14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEG---RKVTFVQV 70
Query: 103 DLASLDSVRQFVDT-FRRSGRPLDVLVCNA 131
DL +S + V G+ +D+LV NA
Sbjct: 71 DLTKPESAEKVVKEALEEFGK-IDILVNNA 99
|
Length = 258 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 5e-04
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V+ITG SSG+G A A A G + + A A +A +A +T + LD+
Sbjct: 3 VVLITGCSSGIGRALADAFKAAG--YEVWA-----TARKAEDVEALAAAGFTAVQLDVND 55
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNA 131
++ + + LDVL+ NA
Sbjct: 56 GAALARLAEELEAEHGGLDVLINNA 80
|
Length = 274 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMA-CR-DFLKAERAAKSAGMAKENYTIMHLDLAS 106
++TG G+G A + LA+ G + + A C + +AE + G ++ ++ D++S
Sbjct: 4 LVTGGMGGIGTAICQRLAKDG--YRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSS 61
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLS 163
+S + V P+DVLV NA + ++ TF T E + + TN F ++
Sbjct: 62 FESCKAAVAKVEAELGPIDVLVNNAGI----TRDATFKKMTYEQWSAVIDTNLNSVFNVT 117
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
+ ++D + R+I + S+ G
Sbjct: 118 QPVID--GMRERGWGRIINISSVNG 140
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 19/124 (15%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS---AGMAKENYTIMHLDLA 105
++TGAS G+G A AK LA+ G H+I++ R + A + AG E ++
Sbjct: 12 LVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEME 70
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF-----TAEG-FELSVGTNHLGH 159
+D++ F R GR LD+LV NAA P F T G F+ +V N G+
Sbjct: 71 QIDAL--FAHIRERHGR-LDILVNNAAA------NPYFGHILDTDLGAFQKTVDVNIRGY 121
Query: 160 FLLS 163
F +S
Sbjct: 122 FFMS 125
|
Length = 252 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-04
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG SSG+GLAT + L E G + + RD ER A + +E + L A
Sbjct: 11 AVVTGGSSGIGLATVELLLEAGA-SVAICGRD---EERLASAEARLREKFPGARLLAARC 66
Query: 108 D-----SVRQFVDTFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFL 161
D V F +D+LV NA + T + T A EL L +F
Sbjct: 67 DVLDEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDEL-----ELKYFS 121
Query: 162 L---SRLLLDDLKQSDYPS 177
+ +R L L+ S S
Sbjct: 122 VINPTRAFLPLLRASAAAS 140
|
Length = 265 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 2/121 (1%)
Query: 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 99
L V+ITGASSG+G ATA+A A G +++A RD + A+ +
Sbjct: 2 MGPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLV 60
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159
+ D+ D V+ G +DV V N V E T E E + TN +G+
Sbjct: 61 VPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEET-PIEAHEQVIQTNLIGY 119
Query: 160 F 160
Sbjct: 120 M 120
|
Length = 330 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 7/126 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG + G+G A A+A G ++ +A+ + + D+ +
Sbjct: 10 ALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVF------TIKCDVGNR 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D V++ + + +DVLV NA + E F E + + N G + L
Sbjct: 64 DQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFE-EFDEEKYNKMIKINLNGAIYTTYEFL 122
Query: 168 DDLKQS 173
LK S
Sbjct: 123 PLLKLS 128
|
Length = 255 |
| >gnl|CDD|187658 cd08955, KR_2_FAS_SDR_x, beta-ketoacyl reductase (KR) domain of fatty acid synthase (FAS), subgroup 2, complex (x) | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLD 103
+ +ITG GLGL A+ L E G H+++ R A A + + ++ D
Sbjct: 150 ATYLITGGLGGLGLLVAEWLVERGARHLVLTGRRAPSAAARQAIAALEEAGAEVVVLAAD 209
Query: 104 LASLDSVRQFVDTFRRSGRPL 124
++ D++ + R S PL
Sbjct: 210 VSDRDALAAALAQIRASLPPL 230
|
Ketoreductase, a module of the multidomain polyketide synthase, has 2 subdomains, each corresponding to a short-chain dehydrogenases/reductase (SDR) family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerizes but is composed of 2 subdomains, each resembling an SDR monomer. In some instances, as in porcine FAS, an enoyl reductase (a Rossman fold NAD binding domain of the MDR family) module is inserted between the sub-domains. The active site resembles that of typical SDRs, except that the usual positions of the catalytic asparagine and tyrosine are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular polyketide synthases are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) fatty acid synthase. In some instances, such as porcine FAS , an enoyl reductase module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consists of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthesis uses dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-ketoacyl reductase (KR), forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-enoyl reductase (ER). Polyketide syntheses also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes the KR domain of the Lyngbya majuscule Jam J, -K, and #L which are encoded on the jam gene cluster and are involved in the synthesis of the Jamaicamides (neurotoxins); Lyngbya majuscule Jam P belongs to a different KR_FAS_SDR_x subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 376 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 18/155 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 104
I+TG ++G+G A A LA+ G +I LK+E A A ++ + ++
Sbjct: 2 AIVTGGAAGIGKAIAGTLAKAGASVVIAD----LKSEGAEAVAAAIQQAGGQAIGLECNV 57
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
S + V T + G + +LV NA P + T E FE + N F LS
Sbjct: 58 TSEQDLEAVVKATVSQFGG-ITILVNNAGGGGPKPFDMPMTEEDFEWAFKLNLFSAFRLS 116
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
+L ++++ G+I N ++++
Sbjct: 117 QLCAPHMQKAGG--------GAIL-NISSMSSENK 142
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.001
Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 17/150 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 105
++ITGA +G A KA+ E G +I A D +S G + +++ LD+
Sbjct: 7 ILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDIT 65
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT------NHLG- 158
+S+ +F+ +D V A Y P K + + F++S+ HLG
Sbjct: 66 DQESLEEFLSKSAEKYGKIDGAVNCA--Y-PRNK--DYGKKFFDVSLDDFNENLSLHLGS 120
Query: 159 HFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
FL S+ K+ + L+ + SI G
Sbjct: 121 SFLFSQQFAKYFKKQGGGN--LVNISSIYG 148
|
Length = 256 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.001
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 11/102 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA+ G+G A ++L G + A RD A G + + LD+
Sbjct: 6 VLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYG---DKVVPLRLDVTDP 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 149
+S++ + +DV++ NA V K T EG
Sbjct: 63 ESIK----AAAAQAKDVDVVINNAGV----LKPATLLEEGAL 96
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.001
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 6/142 (4%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+SG+GLA A+ L + G + C R K A D+ S+
Sbjct: 7 LVTGATSGIGLAIARRLGKEG--LRVFVCARGEEGLATTVKELREAGVEADGRTCDVRSV 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-GTNHLGHFLLSRLL 166
+ V P+DVLV NA A+ L V TN G F +++ +
Sbjct: 65 PEIEALVAAAVARYGPIDVLVNNAG--RSGGGATAELADELWLDVVETNLTGVFRVTKEV 122
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L + + R+I + S G
Sbjct: 123 LKAGGMLERGTGRIINIASTGG 144
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 10/138 (7%)
Query: 30 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACR---DFLKAER 85
P + L+ G V ++TG + G+G A A+ALA +++ R + +
Sbjct: 189 PLPLPAGAAASAPLKPGGVYLVTGGAGGIGRALARALARRYGARLVLLGRSPLPPEEEWK 248
Query: 86 AAKSAGMAKENYTIMH--LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV---YLPTAKE 140
A A + +++ D+ +VR+ ++ R +D ++ A V L K
Sbjct: 249 AQTLAALEALGARVLYISADVTDAAAVRRLLEKVRERYGAIDGVIHAAGVLRDALLAQKT 308
Query: 141 PTFTAEGFELSV-GTNHL 157
V G +L
Sbjct: 309 AEDFEAVLAPKVDGLLNL 326
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.001
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 6/118 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
I+TGA +G+G A A LA G +++A D A+ AG A + +D+
Sbjct: 6 AIVTGAGAGIGAACAARLAREGA-RVVVADIDGGAAQAVVAQIAGGA----LALRVDVTD 60
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V + LD+LV NA T ++ ++ N G FL R
Sbjct: 61 EQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCCR 118
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.001
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTI 99
L+ + I+TG G+G AT + AE G +A D L E A K A + N
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA---KVAVFD-LNREAAEKVAADIRAKGGNAQA 56
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
D+ DSV V ++ P+DVLV NA
Sbjct: 57 FACDITDRDSVDTAVAAAEQALGPVDVLVNNA 88
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 30/131 (22%), Positives = 46/131 (35%), Gaps = 11/131 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+++G GLG A A G +++A R + + A + D+
Sbjct: 8 VVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDE 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLL 162
D V R GR +D LV NA + EL+V LG L
Sbjct: 67 DQCANLVALALERFGR-VDALVNNAFRVPSMKPLADADFAHWRAVIELNV----LGTLRL 121
Query: 163 SRLLLDDLKQS 173
++ L +S
Sbjct: 122 TQAFTPALAES 132
|
Length = 258 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.002
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
+ITG SSG G A A+A G ++ R +A RA A + LD+ D
Sbjct: 8 LITGVSSGFGRALAQAALAAG-HRVVGTVRS--EAARADFEAL-HPDRALARLLDVTDFD 63
Query: 109 SVRQFVDTFRRSGRPLDVLVCNA 131
++ V + P+DVLV NA
Sbjct: 64 AIDAVVADAEATFGPIDVLVNNA 86
|
Length = 277 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.002
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
+ + +V++TG S GLG A A+A A G ++ + + A A + +
Sbjct: 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQS---EDAAEALADELGDRAIALQA 59
Query: 103 DLASLDSVRQFVDTFR-RSGRPLDVLVCNAAV 133
D+ + V+ T G+P+ +V NA
Sbjct: 60 DVTDREQVQAMFATATEHFGKPITTVVNNALA 91
|
Length = 253 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 33 DVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG- 91
D+ S GK ++ITG++ G+G A LAE G II + AERA +
Sbjct: 3 DLFSLAGKN------ILITGSAQGIGFLLATGLAEYGAEIIIND----ITAERAELAVAK 52
Query: 92 MAKENYTI--MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133
+ +E ++ V ++ + P+DVL+ NA +
Sbjct: 53 LRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPIDVLINNAGI 96
|
Length = 254 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 15/136 (11%)
Query: 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL 102
L+ I+TG S G+G A L E G I +F K +Y +
Sbjct: 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVI-----NF-----DIKEPSYNDVDY--FKV 51
Query: 103 DLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
D+++ + V + +D + GR +D+LV NA + A E + + N G FL
Sbjct: 52 DVSNKEQVIKGIDYVISKYGR-IDILVNNAGIESYGAIHAVEEDEWDRI-INVNVNGIFL 109
Query: 162 LSRLLLDDLKQSDYPS 177
+S+ + + + D
Sbjct: 110 MSKYTIPYMLKQDKGV 125
|
Length = 258 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.4 bits (89), Expect = 0.003
Identities = 23/139 (16%), Positives = 41/139 (29%), Gaps = 24/139 (17%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++TG + +G + L G + R + LDL
Sbjct: 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLD--------RLRDGLDPLLSGVEFVVLDLTDR 54
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D V + D ++ AA + AE + N G + LL
Sbjct: 55 DLVDELAKGVP------DAVIHLAAQSSVPDSNASDPAEFLD----VNVDG----TLNLL 100
Query: 168 DDLKQSDYPSKRLIIVGSI 186
+ + KR + S+
Sbjct: 101 EAARA--AGVKRFVFASSV 117
|
Length = 314 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH----LD 103
+TGA+SG+G ATA LA G + + RD A+ A++ A+ + LD
Sbjct: 3 CFVTGAASGIGRATALRLAAQGA-ELFLTDRD---ADGLAQTVADARALGGTVPEHRALD 58
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133
++ D+V F + +DV++ A +
Sbjct: 59 ISDYDAVAAFAADIHAAHGSMDVVMNIAGI 88
|
Length = 272 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.004
Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 23/124 (18%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACR----DFLKAE------RAAKSAGMAKENYT 98
IITGASSG+G A AK A G ++ A R D L AE A AG
Sbjct: 10 IITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAG------- 62
Query: 99 IMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL 157
D+ + V R G LD+ NA + EG+ ++ TN
Sbjct: 63 ----DVRDEAYAKALVALAVERFGG-LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLT 117
Query: 158 GHFL 161
FL
Sbjct: 118 SAFL 121
|
Length = 254 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.004
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 17/141 (12%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKE 95
++ ITGAS G+G A A A G ++++A + + AE + G A
Sbjct: 5 TLFITGASRGIGKAIALKAARDGA-NVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGKALP 63
Query: 96 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 155
+ + +V + V+ F G +D+LV NA+ T T ++L +G N
Sbjct: 64 CIVDIRDEDQVRAAVEKAVEKF--GG--IDILVNNASAISLTGTLDTPMKR-YDLMMGVN 118
Query: 156 HLGHFLLSRLLLDDLKQSDYP 176
G +L S+ L LK+S P
Sbjct: 119 TRGTYLCSKACLPYLKKSKNP 139
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|131732 TIGR02685, pter_reduc_Leis, pteridine reductase | Back alignment and domain information |
|---|
Score = 38.0 bits (88), Expect = 0.004
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 17/132 (12%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM-HLDLAS- 106
++TGA+ +G + A AL + G ++ R A A + N + DL++
Sbjct: 5 VVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNS 64
Query: 107 ---LDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPT------AKEPTFTAEGFELSV---- 152
+D FR GR DVLV NA+ + PT A E + E+ V
Sbjct: 65 ATLFSRCEAIIDACFRAFGR-CDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELF 123
Query: 153 GTNHLGHFLLSR 164
G+N + + L +
Sbjct: 124 GSNAIAPYFLIK 135
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. Length = 267 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.98 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.98 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.98 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.98 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.98 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.98 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.97 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.97 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.97 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.97 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.97 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.97 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.97 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.97 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.97 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.97 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.96 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.96 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.96 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.96 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.96 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.96 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.96 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.96 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.96 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.95 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.95 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.95 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.95 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.95 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.94 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.94 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.94 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.93 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.92 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.91 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.89 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.89 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.87 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.87 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.86 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.86 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.84 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.84 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.83 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.82 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.82 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.82 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.82 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.81 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.81 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.8 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.8 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.8 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.79 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.78 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.76 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.75 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.75 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.75 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.74 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.74 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.72 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.71 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.71 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.7 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.7 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.7 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.69 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.69 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.67 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.66 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.65 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.63 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.63 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.62 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.62 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.61 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.6 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.59 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.56 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.54 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.54 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.54 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.53 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.52 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.47 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.45 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.44 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.42 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.41 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.41 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.4 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.38 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.37 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 99.36 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.35 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.26 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.26 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.26 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.25 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.22 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.2 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.17 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.12 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.12 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.09 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.08 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.06 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.03 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.03 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.99 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.95 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.86 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.84 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.84 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.83 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 98.78 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 98.73 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.72 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.65 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.65 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 98.58 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.55 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.46 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 98.46 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.44 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.32 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.26 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.22 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.15 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.09 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.08 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.04 | |
| PLN00106 | 323 | malate dehydrogenase | 98.03 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.97 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.96 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 97.87 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.74 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.7 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.7 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.67 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.53 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.47 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.45 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.44 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.29 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.29 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.27 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.19 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.19 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.12 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.12 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.11 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.07 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.06 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.02 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.02 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.98 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.97 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.95 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.87 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.81 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.81 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.79 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.72 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.71 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.67 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 96.66 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 96.63 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 96.62 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.62 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.55 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 96.53 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.53 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.52 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 96.5 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.49 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 96.44 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.43 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 96.43 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.42 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.42 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.41 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.39 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 96.38 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 96.37 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.36 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.32 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 96.3 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.3 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.28 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 96.19 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.15 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.13 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.13 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 96.1 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.09 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.06 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 96.05 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.04 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 96.03 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.0 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.0 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.92 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 95.91 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.89 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.82 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 95.8 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.8 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 95.76 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.71 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 95.7 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 95.7 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.69 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.67 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.62 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.56 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 95.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.5 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.49 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 95.48 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 95.48 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.47 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 95.46 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 95.44 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.42 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.41 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 95.39 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.38 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 95.37 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 95.3 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 95.21 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 95.2 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.19 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.13 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.12 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 95.11 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 95.06 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.06 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.02 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 95.0 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.9 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 94.89 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.84 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 94.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.82 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.81 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 94.78 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 94.77 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 94.69 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 94.66 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 94.65 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.56 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 94.53 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 94.48 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 94.44 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 94.41 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 94.41 | |
| PRK08223 | 287 | hypothetical protein; Validated | 94.4 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 94.39 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.35 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 94.3 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.28 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.28 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 94.27 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.27 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.23 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.2 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.16 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 94.14 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 94.13 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 94.12 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 94.02 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 93.98 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 93.97 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 93.96 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 93.96 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.95 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 93.95 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.95 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 93.92 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 93.91 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 93.9 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 93.89 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 93.87 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 93.87 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 93.87 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 93.82 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.75 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 93.74 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.71 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 93.7 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 93.66 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 93.64 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 93.6 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 93.6 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 93.57 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.56 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 93.41 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 93.37 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.32 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 93.32 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 93.29 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 93.28 | |
| KOG0025 | 354 | consensus Zn2+-binding dehydrogenase (nuclear rece | 93.26 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.25 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 93.24 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 93.23 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 93.18 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 93.16 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 93.16 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 93.15 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 93.12 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 93.08 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.99 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 92.99 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.99 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 92.98 | |
| PRK07411 | 390 | hypothetical protein; Validated | 92.94 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 92.9 | |
| PLN02928 | 347 | oxidoreductase family protein | 92.9 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 92.9 |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-41 Score=316.24 Aligned_cols=307 Identities=93% Similarity=1.408 Sum_probs=236.1
Q ss_pred EEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEE
Q 018331 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 128 (358)
Q Consensus 49 lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv 128 (358)
|||||++|||++++++|+++|++.|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.++++|+||
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 69999999999999999999933899999998877777777754456788899999999999999999988888999999
Q ss_pred EcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccccc
Q 018331 129 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 208 (358)
Q Consensus 129 ~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~ 208 (358)
||||+........+.+.++|+++|++|+.|++.+++.++|.|.+++..+|+||++||..+..+......++..++.++..
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~~~~~~ 160 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 160 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccchhhhhh
Confidence 99998644334557789999999999999999999999999987631137999999998764322222233345555555
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc-cCCcccccchhhhhhhcchh
Q 018331 209 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRLLFPPF 287 (358)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v-~t~~~~~~~~~~~~~~~~~~ 287 (358)
+.....+.+........++.++..|+.||+|+..+++.+++++....||+|++|+||+| .|++. +...+........+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~-~~~~~~~~~~~~~~ 239 (308)
T PLN00015 161 LAGGLNGLNSSAMIDGGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLF-REHIPLFRLLFPPF 239 (308)
T ss_pred hhcccCCccchhhccccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCcccc-ccccHHHHHHHHHH
Confidence 44443333222222233556788999999999999999999984346999999999999 56654 33222222222223
Q ss_pred HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHHHHHHhc
Q 018331 288 QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVG 356 (358)
Q Consensus 288 ~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 356 (358)
...+.+++.+|+++|+.+++++++.....+|.||.+++...+.+..+.....|.+.+++||+.|+++++
T Consensus 240 ~~~~~~~~~~pe~~a~~~~~l~~~~~~~~~G~~~~~~g~~~~~~~~~~~~a~d~~~~~~lw~~~~~~~~ 308 (308)
T PLN00015 240 QKYITKGYVSEEEAGKRLAQVVSDPSLTKSGVYWSWNGGSASFENQLSQEASDAEKAKKVWEISEKLVG 308 (308)
T ss_pred HHHHhcccccHHHhhhhhhhhccccccCCCccccccCCcccccccCcChhhcCHHHHHHHHHHHHHhcC
Confidence 344455678999999999999998887899999999886544445677778899999999999999875
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=313.09 Aligned_cols=312 Identities=78% Similarity=1.223 Sum_probs=237.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+|++|||||++|||+++++.|+++|+++|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.+++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 47899999999999999999999999449999999988877777777655567889999999999999999999888889
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||+........+.+.++|+.++++|+.+++.++++++|.|.+++...++||++||..+....+....++..++
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~ 161 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL 161 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence 99999999986432233456889999999999999999999999999876322379999999988754333333444455
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc-cCCcccccchhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPLFRL 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v-~t~~~~~~~~~~~~~ 282 (358)
.++..+.....+. ....+..++.++..|+.||+|+..+++.+++++..+.||+|++|+||+| .|++. +........
T Consensus 162 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~-~~~~~~~~~ 238 (314)
T TIGR01289 162 GDLSGLAAGFKAP--IAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLF-REHVPLFRT 238 (314)
T ss_pred cccccccccCCCc--ccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCccc-ccccHHHHH
Confidence 5544332222211 1222334567888999999999999999999983346999999999999 57644 322222222
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHHHHHHhcCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGLA 358 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 358 (358)
+...+......++.+|++.++.+++++.++....+|.||.+++...+......+...|.+.++++|+.|+++++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~~~~~~~~~ 314 (314)
T TIGR01289 239 LFPPFQKYITKGYVSEEEAGERLAQVVSDPKLKKSGVYWSWGNRQESFVNQLSEEVSDDSKASKMWDLSEKLVGLA 314 (314)
T ss_pred HHHHHHHHHhccccchhhhhhhhHHhhcCcccCCCceeeecCCcccccccCCChhhcCHHHHHHHHHHHHHHhccC
Confidence 2233333334457899999999999998877667999999876542222345677789999999999999999874
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=299.26 Aligned_cols=313 Identities=60% Similarity=1.031 Sum_probs=230.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||+++++.|+++| .+|++++|+..+++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRG-WHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999 499999999888877777775445678999999999999999999988777
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC--CCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN--VPP 199 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~--~~~ 199 (358)
+++|+||||||+........+.+.++|+.++++|+.|++.++++++|.|+++....++||++||..+..+..... .+.
T Consensus 82 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~~~~~~ 161 (322)
T PRK07453 82 KPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGKIPIPA 161 (322)
T ss_pred CCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCccCCCC
Confidence 899999999998643222335688999999999999999999999999987643236999999988764322111 122
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc-CCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~-t~~~~~~~~~ 278 (358)
..++.++.......... ....+..++.+...|+.||++++.+++.+++++....||++++|+||.|. |+ +.+....
T Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~-~~~~~~~ 238 (322)
T PRK07453 162 PADLGDLSGFEAGFKAP--ISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTP-LFRNTPP 238 (322)
T ss_pred ccchhhhhcchhccccc--ccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCc-ccccCCH
Confidence 22333332221111110 01112234566789999999999999999999844569999999999995 65 4343322
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc----cccccchhccCHHHHHHHHHHHHHH
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS----FENQLSQEASDVEKARKVWEISEKL 354 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~w~~~~~~ 354 (358)
....+...+......+..+++..++.+++++.++....+|.||.++..... ..........|.+.++++|+.++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~a~d~~~~~~lw~~s~~~ 318 (322)
T PRK07453 239 LFQKLFPWFQKNITGGYVSQELAGERVAQVVADPEFAQSGVHWSWGNRQKKDRKAFSQELSDRATDDDKARRLWDLSAKL 318 (322)
T ss_pred HHHHHHHHHHHHHhhceecHHHHhhHHHHhhcCcccCCCCceeecCCCCCcCccccccccchhhcCHHHHHHHHHHHHHH
Confidence 222222333333334457889999999999888877789999986543211 0123456678999999999999999
Q ss_pred hcCC
Q 018331 355 VGLA 358 (358)
Q Consensus 355 ~~~~ 358 (358)
++++
T Consensus 319 ~~~~ 322 (322)
T PRK07453 319 VGLA 322 (322)
T ss_pred hCcC
Confidence 9874
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=283.18 Aligned_cols=229 Identities=24% Similarity=0.307 Sum_probs=199.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|+++|||||+|||.++|++|++.| ++|++++|+.+.++.+..++.+ .++..+..|++|.++++.+++.+.+++
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G-~~vvl~aRR~drL~~la~~~~~--~~~~~~~~DVtD~~~~~~~i~~~~~~~ 79 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAG-AKVVLAARREERLEALADEIGA--GAALALALDVTDRAAVEAAIEALPEEF 79 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCC-CeEEEEeccHHHHHHHHHhhcc--CceEEEeeccCCHHHHHHHHHHHHHhh
Confidence 5678999999999999999999999999 4999999999999999998875 678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.+.. .++.+.+.++|+.++++|+.|.+..+++++|.|.++. .|.|||+||++|..
T Consensus 80 g~iDiLvNNAGl~~g-~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~--~G~IiN~~SiAG~~----------- 145 (246)
T COG4221 80 GRIDILVNNAGLALG-DPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERK--SGHIINLGSIAGRY----------- 145 (246)
T ss_pred CcccEEEecCCCCcC-ChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcC--CceEEEeccccccc-----------
Confidence 999999999999866 6888999999999999999999999999999999987 48999999999984
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
++++...|+.+|+++..|+..|.+|+ ..++|+|..|.||.+.|+.+..-... .
T Consensus 146 ------------------------~y~~~~vY~ATK~aV~~fs~~LR~e~-~g~~IRVt~I~PG~v~~~~~s~v~~~--g 198 (246)
T COG4221 146 ------------------------PYPGGAVYGATKAAVRAFSLGLRQEL-AGTGIRVTVISPGLVETTEFSTVRFE--G 198 (246)
T ss_pred ------------------------cCCCCccchhhHHHHHHHHHHHHHHh-cCCCeeEEEecCceecceecccccCC--c
Confidence 78899999999999999999999999 88999999999999977633221111 1
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.....-........++|+++|++++|.++.|..
T Consensus 199 ~~~~~~~~y~~~~~l~p~dIA~~V~~~~~~P~~ 231 (246)
T COG4221 199 DDERADKVYKGGTALTPEDIAEAVLFAATQPQH 231 (246)
T ss_pred hhhhHHHHhccCCCCCHHHHHHHHHHHHhCCCc
Confidence 111111111223478999999999999998875
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=299.01 Aligned_cols=279 Identities=37% Similarity=0.549 Sum_probs=227.5
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
..++++++++||||++|||+++|+.|+.+|+ +|++.+|+.+..+...+.+.. ...++.++++|+++.++|.++++++
T Consensus 30 ~~~~~~~~~vVTGansGIG~eta~~La~~Ga-~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~ 108 (314)
T KOG1208|consen 30 GIDLSGKVALVTGATSGIGFETARELALRGA-HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEF 108 (314)
T ss_pred cccCCCcEEEEECCCCchHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHH
Confidence 3578899999999999999999999999995 999999999888888888865 3567899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|++|||||++..+. ..+.|++|.+|.+|++|++++++.++|.|+.+.. +|||+|||..+ .
T Consensus 109 ~~~~~~ldvLInNAGV~~~~~---~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~--~RIV~vsS~~~-~------- 175 (314)
T KOG1208|consen 109 KKKEGPLDVLINNAGVMAPPF---SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP--SRIVNVSSILG-G------- 175 (314)
T ss_pred HhcCCCccEEEeCcccccCCc---ccCccchhheehhhhHHHHHHHHHHHHHHhhCCC--CCEEEEcCccc-c-------
Confidence 999999999999999996643 6688999999999999999999999999998753 89999999887 2
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
...++.++.+ .....+.....|+.||.++..+++.|++++ .. ||.+++++||.+.|+.+.+ ..
T Consensus 176 -~~~~~~~l~~-------------~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l-~~-~V~~~~~hPG~v~t~~l~r-~~ 238 (314)
T KOG1208|consen 176 -GKIDLKDLSG-------------EKAKLYSSDAAYALSKLANVLLANELAKRL-KK-GVTTYSVHPGVVKTTGLSR-VN 238 (314)
T ss_pred -Cccchhhccc-------------hhccCccchhHHHHhHHHHHHHHHHHHHHh-hc-CceEEEECCCcccccceec-ch
Confidence 1222333221 011125556689999999999999999999 44 9999999999999987766 22
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecCCCCcccccccchhccCHHHHHHHHHHHHHHhc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVG 356 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 356 (358)
.+...+...+... ...+++..|++.++++.+++.. .+|.|+..+... .+.....+++.++++|+.++++++
T Consensus 239 ~~~~~l~~~l~~~---~~ks~~~ga~t~~~~a~~p~~~~~sg~y~~d~~~~-----~~~~~a~d~~~~~~lw~~s~~l~~ 310 (314)
T KOG1208|consen 239 LLLRLLAKKLSWP---LTKSPEQGAATTCYAALSPELEGVSGKYFEDCAIA-----EPSEEALDEELAEKLWKFSEELID 310 (314)
T ss_pred HHHHHHHHHHHHH---hccCHHHHhhheehhccCccccCcccccccccccc-----ccccccCCHHHHHHHHHHHHHHhh
Confidence 2222222222211 1248999999999999988765 899998777643 446778899999999999999887
Q ss_pred C
Q 018331 357 L 357 (358)
Q Consensus 357 ~ 357 (358)
+
T Consensus 311 ~ 311 (314)
T KOG1208|consen 311 E 311 (314)
T ss_pred h
Confidence 5
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=295.23 Aligned_cols=246 Identities=16% Similarity=0.174 Sum_probs=205.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||+++++.|+++|+ +|++++|+.+.++...+++... +.++.++++|+++.++++++++++.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~- 81 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELK- 81 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHH-
Confidence 468999999999999999999999999995 9999999988877777666443 4578999999999999999999986
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|++|||+|.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 82 ~~g~iD~lv~nag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~--~g~Ii~isS~~~~~--------- 149 (263)
T PRK08339 82 NIGEPDIFFFSTGGPKP-GYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG--FGRIIYSTSVAIKE--------- 149 (263)
T ss_pred hhCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcCccccC---------
Confidence 58899999999998644 4566789999999999999999999999999998765 38999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.+.+..|+.+|+|+.+|++.+++|+ ++.||+||+|+||+|+|++......
T Consensus 150 --------------------------~~~~~~~y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~ 202 (263)
T PRK08339 150 --------------------------PIPNIALSNVVRISMAGLVRTLAKEL-GPKGITVNGIMPGIIRTDRVIQLAQDR 202 (263)
T ss_pred --------------------------CCCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccHHHHHHHHhh
Confidence 45677889999999999999999999 8889999999999999986432100
Q ss_pred ------hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 ------PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ------~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+.+++.+|+|++++++||+++.+..++|+.+..||..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG~ 258 (263)
T PRK08339 203 AKREGKSVEEALQEYAKPIPLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGGR 258 (263)
T ss_pred hhccCCCHHHHHHHHhccCCcccCcCHHHHHHHHHHHhcchhcCccCceEEECCCc
Confidence 00011111222345567889999999999999998888999999999864
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=304.36 Aligned_cols=274 Identities=16% Similarity=0.109 Sum_probs=210.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh----------HHHHHHHHHhcCCCCceEEEEecCCCHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----------LKAERAAKSAGMAKENYTIMHLDLASLDSV 110 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~----------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i 110 (358)
+++++|++|||||++|||+++++.|++.|+ +|++++|+. +.++...+.+...+.++.++++|+++.+++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v 82 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQV 82 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence 458899999999999999999999999995 999999973 344555555655556788999999999999
Q ss_pred HHHHHHHHhcCCCccEEEEcc-cccC---CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 111 RQFVDTFRRSGRPLDVLVCNA-AVYL---PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 111 ~~~~~~~~~~~~~iD~lv~~a-g~~~---~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
+++++++.+.+++||+||||| |... ...++.+.+.+.|++.+++|+.+++.++++++|+|.+++ +|+||++||.
T Consensus 83 ~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~--~g~IV~isS~ 160 (305)
T PRK08303 83 RALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRP--GGLVVEITDG 160 (305)
T ss_pred HHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCC--CcEEEEECCc
Confidence 999999999999999999999 7531 113556778899999999999999999999999998764 4899999997
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
.+.... .+.++...|+.||+|+.+|+++|+.|+ ++.||+||+|+||+
T Consensus 161 ~~~~~~--------------------------------~~~~~~~~Y~asKaal~~lt~~La~el-~~~gIrVn~v~PG~ 207 (305)
T PRK08303 161 TAEYNA--------------------------------THYRLSVFYDLAKTSVNRLAFSLAHEL-APHGATAVALTPGW 207 (305)
T ss_pred cccccC--------------------------------cCCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEecCCc
Confidence 653200 122345679999999999999999999 78899999999999
Q ss_pred ccCCcccccchhhhhhhcchhHHhh-hcCccchhHHhhhhhhhhcCCC-CCCCceeeecCCCCcccccccchhccCHHHH
Q 018331 267 IATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKDSASFENQLSQEASDVEKA 344 (358)
Q Consensus 267 v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~ 344 (358)
++|++...................+ ..+..+|+|++..++||++++. .+++|+++..+... .+.....+.+..
T Consensus 208 v~T~~~~~~~~~~~~~~~~~~~~~p~~~~~~~peevA~~v~fL~s~~~~~~itG~~l~~~~~~-----~~~~~~~~~~~~ 282 (305)
T PRK08303 208 LRSEMMLDAFGVTEENWRDALAKEPHFAISETPRYVGRAVAALAADPDVARWNGQSLSSGQLA-----RVYGFTDLDGSR 282 (305)
T ss_pred cccHHHHHhhccCccchhhhhccccccccCCCHHHHHHHHHHHHcCcchhhcCCcEEEhHHHH-----HhcCccCCCCCC
Confidence 9998642211000000111111223 2345689999999999999885 46899999855422 222223355778
Q ss_pred HHHHHHHHHHh
Q 018331 345 RKVWEISEKLV 355 (358)
Q Consensus 345 ~~~w~~~~~~~ 355 (358)
+++|++++++-
T Consensus 283 ~~~~~~~~~~~ 293 (305)
T PRK08303 283 PDAWRYLVEVQ 293 (305)
T ss_pred Ccchhhhhhcc
Confidence 89999999874
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=295.26 Aligned_cols=244 Identities=15% Similarity=0.136 Sum_probs=195.5
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh-cCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~-~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+.+++|++|||||+ +|||+++|++|+++|+ +|++++|+....+. .+++ ...+.. .++++|+++.++++++++++
T Consensus 1 ~~l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~-~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i 77 (274)
T PRK08415 1 MIMKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKR-VEPIAQELGSD-YVYELDVSKPEHFKSLAESL 77 (274)
T ss_pred CccCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHH-HHHHHHhcCCc-eEEEecCCCHHHHHHHHHHH
Confidence 35789999999997 8999999999999995 99999998532222 2222 111233 67899999999999999999
Q ss_pred HhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 118 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
.+.++++|+||||||+... ..++.+.+.++|++++++|+.+++.++++++|+|.++ |+||++||..+..
T Consensus 78 ~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~----g~Iv~isS~~~~~---- 149 (274)
T PRK08415 78 KKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG----ASVLTLSYLGGVK---- 149 (274)
T ss_pred HHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC----CcEEEEecCCCcc----
Confidence 9999999999999998632 2356678999999999999999999999999999753 7999999987763
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.+.+..|+.||+|+.+|+++++.|+ .++||+||+|+||+|+|++..
T Consensus 150 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~- 196 (274)
T PRK08415 150 -------------------------------YVPHYNVMGVAKAALESSVRYLAVDL-GKKGIRVNAISAGPIKTLAAS- 196 (274)
T ss_pred -------------------------------CCCcchhhhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHh-
Confidence 44667789999999999999999999 888999999999999997432
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
....+...........+.+++.+|+|++++++||+++.+..++|+.+..||...
T Consensus 197 ~~~~~~~~~~~~~~~~pl~r~~~pedva~~v~fL~s~~~~~itG~~i~vdGG~~ 250 (274)
T PRK08415 197 GIGDFRMILKWNEINAPLKKNVSIEEVGNSGMYLLSDLSSGVTGEIHYVDAGYN 250 (274)
T ss_pred ccchhhHHhhhhhhhCchhccCCHHHHHHHHHHHhhhhhhcccccEEEEcCccc
Confidence 111110000001123355678899999999999999888889999999999753
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=271.78 Aligned_cols=244 Identities=22% Similarity=0.210 Sum_probs=213.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..+..|+++||||++|||+++++.|+.+|+ +|++.+++...++.....+..+ .+...++||+++.++++..+++..+.
T Consensus 10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Ga-rv~v~dl~~~~A~ata~~L~g~-~~h~aF~~DVS~a~~v~~~l~e~~k~ 87 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGA-RVAVADLDSAAAEATAGDLGGY-GDHSAFSCDVSKAHDVQNTLEEMEKS 87 (256)
T ss_pred HHHhcceeEEecCCchHHHHHHHHHHhcCc-EEEEeecchhhHHHHHhhcCCC-CccceeeeccCcHHHHHHHHHHHHHh
Confidence 357889999999999999999999999996 9999999988888888888766 45678999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++++||||||+.... .+..+.-++|+..+.+|+.|.|+.++++.+.|......+.+||||||+.|..
T Consensus 88 ~g~psvlVncAGItrD~-~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGki---------- 156 (256)
T KOG1200|consen 88 LGTPSVLVNCAGITRDG-LLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKI---------- 156 (256)
T ss_pred cCCCcEEEEcCcccccc-ceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccc----------
Confidence 99999999999998654 4557888999999999999999999999999665544356999999999986
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.-++..|+++|.++++|+++.|+|+ +.++|+||+|.||+|.|||... ..+
T Consensus 157 -------------------------GN~GQtnYAAsK~GvIgftktaArEl-a~knIrvN~VlPGFI~tpMT~~-mp~-- 207 (256)
T KOG1200|consen 157 -------------------------GNFGQTNYAASKGGVIGFTKTAAREL-ARKNIRVNVVLPGFIATPMTEA-MPP-- 207 (256)
T ss_pred -------------------------ccccchhhhhhcCceeeeeHHHHHHH-hhcCceEeEeccccccChhhhh-cCH--
Confidence 44578899999999999999999999 8899999999999999996633 322
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..+..+....|..++-.+||+|..++||+++.+..++|+-+..+|.
T Consensus 208 ~v~~ki~~~iPmgr~G~~EevA~~V~fLAS~~ssYiTG~t~evtGG 253 (256)
T KOG1200|consen 208 KVLDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTLEVTGG 253 (256)
T ss_pred HHHHHHHccCCccccCCHHHHHHHHHHHhccccccccceeEEEecc
Confidence 2333455566778899999999999999999999999999999885
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=290.05 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=198.5
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++|++|||||+ +|||++++++|+++|+ +|++++|+. ..+...+++. ..++.++++|+++.++++++++++.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~-~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQND-RMKKSLQKLV--DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCch-HHHHHHHhhc--cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 4789999999999 8999999999999995 999999984 3333344443 24678999999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||.... ..++.+.+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~------ 149 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP----GASIVTLTYFGSER------ 149 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc----CceEEEEeccCccc------
Confidence 99999999999998643 135667899999999999999999999999999964 27999999988763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||+|+.+|+++++.|+ .++||+||+|+||+|+|++...-.
T Consensus 150 -----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~vn~i~PG~v~T~~~~~~~ 199 (252)
T PRK06079 150 -----------------------------AIPNYNVMGIAKAALESSVRYLARDL-GKKGIRVNAISAGAVKTLAVTGIK 199 (252)
T ss_pred -----------------------------cCCcchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccccccccCC
Confidence 44677889999999999999999999 888999999999999998543211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+.+++.+|+|++++++||+++....++|+.+..||..
T Consensus 200 -~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg~ 249 (252)
T PRK06079 200 -GHKDLLKESDSRTVDGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKGV 249 (252)
T ss_pred -ChHHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccccccEEEeCCce
Confidence 10011111222345567889999999999999998888999999999863
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=291.90 Aligned_cols=263 Identities=18% Similarity=0.210 Sum_probs=212.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||+++++.|+++|+ +|++++|+ +.++...+++...+.++.++.+|+++.+++..+++++.+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999 66677666766556678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.+.|++++++|+.+++.++++++|+|++++ |+||++||..+..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 146 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG---GSIINTSSFSGQA----------- 146 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEeCchhhcC-----------
Confidence 99999999999875434566778899999999999999999999999998763 7999999988764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~- 280 (358)
+.++...|+.||+|++.|++++++|+ .+.||+||+|+||+|+|++...-.....
T Consensus 147 ------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~PG~v~T~~~~~~~~~~~~ 201 (272)
T PRK08589 147 ------------------------ADLYRSGYNAAKGAVINFTKSIAIEY-GRDGIRANAIAPGTIETPLVDKLTGTSED 201 (272)
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCchhhhhcccchh
Confidence 34556789999999999999999999 7789999999999999986532111000
Q ss_pred ---hhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHHH
Q 018331 281 ---RLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEIS 351 (358)
Q Consensus 281 ---~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~ 351 (358)
..+.. .....+..++.+|+++++.++||+++....++|+.+..|+..... ...+.......|+.+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg~~~~------~~~~~~~~~~~~~~~ 270 (272)
T PRK08589 202 EAGKTFRENQKWMTPLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGGVMAY------TWPGEMLSDDSWKRT 270 (272)
T ss_pred hHHHHHhhhhhccCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCcccC------CCCCcccccchhhhh
Confidence 00000 001224456789999999999999988888999999999875321 122444556677654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=292.06 Aligned_cols=243 Identities=13% Similarity=0.096 Sum_probs=195.0
Q ss_pred cCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++|++|||||++ |||+++|++|+++|+ +|++++|+....+...+.....+ ...++++|+++.++++++++++.+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g-~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLG-SDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcC-CceEEeCCCCCHHHHHHHHHHHHH
Confidence 37899999999997 999999999999995 99999987543333222222222 235789999999999999999999
Q ss_pred cCCCccEEEEcccccCCC---CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||..... .++.+.+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 82 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~----~G~Iv~isS~~~~~------ 151 (271)
T PRK06505 82 KWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD----GGSMLTLTYGGSTR------ 151 (271)
T ss_pred HhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CceEEEEcCCCccc------
Confidence 999999999999986421 34567889999999999999999999999999974 27999999987753
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||+|+.+|+++|+.|+ ++.||+||+|+||+++|++.. ..
T Consensus 152 -----------------------------~~~~~~~Y~asKaAl~~l~r~la~el-~~~gIrVn~v~PG~i~T~~~~-~~ 200 (271)
T PRK06505 152 -----------------------------VMPNYNVMGVAKAALEASVRYLAADY-GPQGIRVNAISAGPVRTLAGA-GI 200 (271)
T ss_pred -----------------------------cCCccchhhhhHHHHHHHHHHHHHHH-hhcCeEEEEEecCCccccccc-cC
Confidence 44667789999999999999999999 888999999999999998542 11
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..............+.+++.+|+|+|+.++||+++.+..++|+.+..|+..
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG~ 251 (271)
T PRK06505 201 GDARAIFSYQQRNSPLRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSGY 251 (271)
T ss_pred cchHHHHHHHhhcCCccccCCHHHHHHHHHHHhCccccccCceEEeecCCc
Confidence 110000001112234566789999999999999988888999999999875
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=287.86 Aligned_cols=244 Identities=16% Similarity=0.167 Sum_probs=200.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.. +...+.++..+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 4 FDLNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 8888888642 2333344444567899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|.|.+++. +|+||++||..+..
T Consensus 81 ~g~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~---------- 148 (251)
T PRK12481 81 MGHIDILINNAGIIRR-QDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGN-GGKIINIASMLSFQ---------- 148 (251)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCC-CCEEEEeCChhhcC----------
Confidence 9999999999998654 35667889999999999999999999999999976532 37999999998764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+++|+++++.|+ .+.||+||+|+||+++|++... .....
T Consensus 149 -------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~girvn~v~PG~v~t~~~~~-~~~~~ 201 (251)
T PRK12481 149 -------------------------GGIRVPSYTASKSAVMGLTRALATEL-SQYNINVNAIAPGYMATDNTAA-LRADT 201 (251)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCCccCchhh-cccCh
Confidence 33456789999999999999999999 7889999999999999986432 11100
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+..++.+|+|++++++||+++.+..++|+.+..||.
T Consensus 202 ~~~~~~~~~~p~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 202 ARNEAILERIPASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 1111223344556788999999999999999888899999999985
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=288.47 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=195.1
Q ss_pred cCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++||++|||||++ |||+++++.|+++|+ +|++++|+. ..++..+++....+...++++|+++.++++++++++.+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKE 82 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHH
Confidence 46899999999997 999999999999995 898888874 33333333322212235678999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+++++|+||||||.... ...+.+.+.++|++.+++|+.+++.+++.++|.|.+ +|+||++||..+..
T Consensus 83 ~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~----~G~Iv~isS~~~~~------ 152 (260)
T PRK06603 83 KWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD----GGSIVTLTYYGAEK------ 152 (260)
T ss_pred HcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CceEEEEecCcccc------
Confidence 99999999999997532 135667899999999999999999999999999964 37999999987753
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||+|+.+|+++++.|+ .+.||+||+|+||+++|++... .
T Consensus 153 -----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~-~ 201 (260)
T PRK06603 153 -----------------------------VIPNYNVMGVAKAALEASVKYLANDM-GENNIRVNAISAGPIKTLASSA-I 201 (260)
T ss_pred -----------------------------CCCcccchhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcCcchhhhc-C
Confidence 44667889999999999999999999 7889999999999999985321 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..............+..++.+|+|+|++++||+++.+.+++|+.+..||..
T Consensus 202 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~ 252 (260)
T PRK06603 202 GDFSTMLKSHAATAPLKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCGY 252 (260)
T ss_pred CCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCcc
Confidence 100011111222345567789999999999999998888999999999874
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-38 Score=287.13 Aligned_cols=241 Identities=15% Similarity=0.142 Sum_probs=195.6
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHH---HHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~---~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
++++||++|||||+ +|||++++++|+++|+ +|++++|+.... +...+++ ....++++|+++.++++++++
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL----DAPIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh----ccceEEecCcCCHHHHHHHHH
Confidence 35789999999999 5999999999999995 899999985432 2222222 235688999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
++.+.++++|++|||||.... ...+.+.+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~----~g~Ii~iss~~~~~-- 154 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN----GGSLLTMSYYGAEK-- 154 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc----CCEEEEEecccccc--
Confidence 999999999999999998642 134567889999999999999999999999999964 37999999987653
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+.+++..|+.||+|+.+|++.|+.|+ .+.||+||+|+||+++|++.
T Consensus 155 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~v~PG~v~T~~~ 200 (258)
T PRK07533 155 ---------------------------------VVENYNLMGPVKAALESSVRYLAAEL-GPKGIRVHAISPGPLKTRAA 200 (258)
T ss_pred ---------------------------------CCccchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCcCChhh
Confidence 44667789999999999999999999 77899999999999999864
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ...............+..++.+|+|++..++||+++....++|+.+..||..
T Consensus 201 ~~-~~~~~~~~~~~~~~~p~~r~~~p~dva~~~~~L~s~~~~~itG~~i~vdgg~ 254 (258)
T PRK07533 201 SG-IDDFDALLEDAAERAPLRRLVDIDDVGAVAAFLASDAARRLTGNTLYIDGGY 254 (258)
T ss_pred hc-cCCcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhChhhccccCcEEeeCCcc
Confidence 22 1111111111223345567889999999999999988888999999999864
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-38 Score=288.17 Aligned_cols=244 Identities=16% Similarity=0.105 Sum_probs=195.5
Q ss_pred cCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++|++||||| ++|||+++|+.|+++|+ +|++++|+.. .++..+++.........+++|+++.++++++++++.+
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDK-LEERVRKMAAELDSELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHH-HHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHH
Confidence 478999999997 67999999999999995 8988887643 2333333332223456789999999999999999999
Q ss_pred cCCCccEEEEcccccCCC----CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 120 SGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.++++|+||||||+.... ..+.+.+.+.|+..+++|+.+++.++++++|.|+++ +|+||++||..+..
T Consensus 81 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~---~g~Iv~iss~~~~~----- 152 (261)
T PRK08690 81 HWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR---NSAIVALSYLGAVR----- 152 (261)
T ss_pred HhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc---CcEEEEEccccccc-----
Confidence 999999999999986431 123456788999999999999999999999998754 37999999988763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.+++..|+.||+|+..|++.++.|+ .+.||+||+|+||+++|++...
T Consensus 153 ------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrVn~i~PG~v~T~~~~~- 200 (261)
T PRK08690 153 ------------------------------AIPNYNVMGMAKASLEAGIRFTAACL-GKEGIRCNGISAGPIKTLAASG- 200 (261)
T ss_pred ------------------------------CCCCcccchhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccchhhhc-
Confidence 45678899999999999999999999 8889999999999999985422
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...............+.+++.+|+|+|+.++||+++.+..++|+.+..||..
T Consensus 201 ~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG~ 252 (261)
T PRK08690 201 IADFGKLLGHVAAHNPLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGGY 252 (261)
T ss_pred CCchHHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCCc
Confidence 1110011111222345567889999999999999998889999999999874
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=287.49 Aligned_cols=244 Identities=13% Similarity=0.116 Sum_probs=197.0
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++++|+++||||+ +|||++++++|+++|+ +|+++.|+.+ ..+...+++.....+..++++|+++.++++++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 81 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETI 81 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHH
Confidence 5789999999986 8999999999999995 8888766432 223334444333345778999999999999999999
Q ss_pred HhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 118 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
.+.++++|+||||||.... ..++.+.+.++|++.+++|+.+++.++++++|.|.+. |+||++||..+..
T Consensus 82 ~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~----g~Iv~isS~~~~~---- 153 (258)
T PRK07370 82 KQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEG----GSIVTLTYLGGVR---- 153 (258)
T ss_pred HHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhC----CeEEEEecccccc----
Confidence 9999999999999997632 2356678899999999999999999999999999753 7999999988763
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.+++..|+.||+|+.+|+++|+.|+ .++||+||+|+||+++|++...
T Consensus 154 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~i~PG~v~T~~~~~ 201 (258)
T PRK07370 154 -------------------------------AIPNYNVMGVAKAALEASVRYLAAEL-GPKNIRVNAISAGPIRTLASSA 201 (258)
T ss_pred -------------------------------CCcccchhhHHHHHHHHHHHHHHHHh-CcCCeEEEEEecCcccCchhhc
Confidence 45677899999999999999999999 7889999999999999985421
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...............+..++.+|+|++..++||+++.+..++|+.+..||..
T Consensus 202 -~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg~ 253 (258)
T PRK07370 202 -VGGILDMIHHVEEKAPLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAGY 253 (258)
T ss_pred -cccchhhhhhhhhcCCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCcc
Confidence 1100011111222335567889999999999999998888999999999864
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=289.91 Aligned_cols=286 Identities=31% Similarity=0.417 Sum_probs=217.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++||+++||||++|||++++++|+++|+ +|++++|+.++.+...+++... +.++.++++|+++.++++++++++.
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~ 88 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLR 88 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999988877777666433 3468899999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||..... ..+.+.++|+.++++|+.|++.+++.++|.|.+.. ++||++||..+..+.
T Consensus 89 ~~~~~iD~li~nAG~~~~~--~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~---~riv~vsS~~~~~~~------ 157 (313)
T PRK05854 89 AEGRPIHLLINNAGVMTPP--ERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGR---ARVTSQSSIAARRGA------ 157 (313)
T ss_pred HhCCCccEEEECCccccCC--ccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCC---CCeEEEechhhcCCC------
Confidence 9999999999999987532 23567899999999999999999999999998653 799999999876421
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCcccccc-
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREH- 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~~- 276 (358)
.++.++ ....+++++..|+.||+|+.+|+++|++++. ...||+||+|+||+|.|++.....
T Consensus 158 --~~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~~~~ 220 (313)
T PRK05854 158 --INWDDL---------------NWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAARPE 220 (313)
T ss_pred --cCcccc---------------cccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCccccccc
Confidence 122221 1123456788999999999999999998752 356899999999999998653211
Q ss_pred -----hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCccc----ccccchhccCHHHHHHH
Q 018331 277 -----IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASF----ENQLSQEASDVEKARKV 347 (358)
Q Consensus 277 -----~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~ 347 (358)
..+...+...+.. ......++++.+...++++.++.. .+|.|+..++..... .........|.+.++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ga~~~l~~a~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 298 (313)
T PRK05854 221 VGRDKDTLMVRLIRSLSA-RGFLVGTVESAILPALYAATSPDA-EGGAFYGPRGPGELGGGPVEQALYPPLRRNAEAARL 298 (313)
T ss_pred cccchhHHHHHHHHHHhh-cccccCCHHHHHHHhhheeeCCCC-CCCcEECCCcccccCCCcccCCCCcccCCHHHHHHH
Confidence 0111111111100 011245899999999999987765 469999876532110 11222334788999999
Q ss_pred HHHHHHHhcC
Q 018331 348 WEISEKLVGL 357 (358)
Q Consensus 348 w~~~~~~~~~ 357 (358)
|+.+++++++
T Consensus 299 w~~s~~~~~~ 308 (313)
T PRK05854 299 WEVSEQLTGV 308 (313)
T ss_pred HHHHHHHHCC
Confidence 9999999985
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=284.20 Aligned_cols=247 Identities=20% Similarity=0.197 Sum_probs=206.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.++++...+++...+.++.++.+|+++.++++++++++.++
T Consensus 2 ~~~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 2 MRLNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999999995 9999999988888777777666678899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 81 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~iv~~sS~~~~~---------- 148 (254)
T PRK07478 81 FGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG--GGSLIFTSTFVGHT---------- 148 (254)
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEechHhhc----------
Confidence 999999999999864434566788999999999999999999999999998764 37999999987652
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.+.+++..|+.||+++..+++++++++ .+.||+|++|+||+++|++.......
T Consensus 149 ------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~-- 201 (254)
T PRK07478 149 ------------------------AGFPGMAAYAASKAGLIGLTQVLAAEY-GAQGIRVNALLPGGTDTPMGRAMGDT-- 201 (254)
T ss_pred ------------------------cCCCCcchhHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCcccCcccccccCC--
Confidence 134567899999999999999999999 77899999999999999854321110
Q ss_pred hhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........ ..+.+++.+|+++++.++||++++...++|+.+..||..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 249 (254)
T PRK07478 202 PEALAFVAGLHALKRMAQPEEIAQAALFLASDAASFVTGTALLVDGGV 249 (254)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCeEEeCCch
Confidence 01111111 123356789999999999999988888999999999864
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=283.89 Aligned_cols=246 Identities=20% Similarity=0.175 Sum_probs=206.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++.. .+.++.++++|+++.+++.++++++.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEE 82 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999995 999999998888877777754 356788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||..... ...+.+.++|++++++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 83 ~~g~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 150 (260)
T PRK07063 83 AFGPLDVLVNNAGINVFA-DPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG--RGSIVNIASTHAFK--------- 150 (260)
T ss_pred HhCCCcEEEECCCcCCCC-ChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC--CeEEEEECChhhcc---------
Confidence 999999999999986443 345678899999999999999999999999998764 37999999987763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.++...|+.||+|+..|++.++.++ .+.||+||+|+||+++|++......
T Consensus 151 --------------------------~~~~~~~Y~~sKaa~~~~~~~la~el-~~~gIrvn~v~PG~v~t~~~~~~~~~~ 203 (260)
T PRK07063 151 --------------------------IIPGCFPYPVAKHGLLGLTRALGIEY-AARNVRVNAIAPGYIETQLTEDWWNAQ 203 (260)
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccChhhhhhhhcc
Confidence 44567789999999999999999999 7789999999999999986432111
Q ss_pred hh-hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PL-FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~-~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+. ...........+.+++.+|+|++..++||+++.+..++|+.+..||+.
T Consensus 204 ~~~~~~~~~~~~~~~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg~ 254 (260)
T PRK07063 204 PDPAAARAETLALQPMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGGR 254 (260)
T ss_pred CChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccccCCcEEEECCCe
Confidence 00 001111122345567889999999999999998888999999999875
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=282.90 Aligned_cols=245 Identities=20% Similarity=0.190 Sum_probs=205.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++..+.+|+++.++++++++++.+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999888888877776666778899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|.|.+++. +++||++||..+....
T Consensus 85 g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~--------- 153 (253)
T PRK05867 85 GGIDIAVCNAGIITV-TPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQ-GGVIINTASMSGHIIN--------- 153 (253)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCC-CcEEEEECcHHhcCCC---------
Confidence 999999999998754 35567788999999999999999999999999987542 3789999998765200
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.......|+.||+|++.|++++++++ .+.||+||+|+||+++|++... ......
T Consensus 154 ------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~i~PG~v~t~~~~~-~~~~~~ 207 (253)
T PRK05867 154 ------------------------VPQQVSHYCASKAAVIHLTKAMAVEL-APHKIRVNSVSPGYILTELVEP-YTEYQP 207 (253)
T ss_pred ------------------------CCCCccchHHHHHHHHHHHHHHHHHH-hHhCeEEEEeecCCCCCccccc-chHHHH
Confidence 01235689999999999999999999 7789999999999999986532 111111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+.+++.+|+|+|++++||+++.+..++|+.+..||+.
T Consensus 208 ---~~~~~~~~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG~ 250 (253)
T PRK05867 208 ---LWEPKIPLGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGGY 250 (253)
T ss_pred ---HHHhcCCCCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCCc
Confidence 1112334567889999999999999998888999999999864
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=285.04 Aligned_cols=243 Identities=12% Similarity=0.122 Sum_probs=197.3
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.++++|+++||||+ +|||+++++.|+++|+ +|++++|+. +.++...+++. +.++.++++|+++.++++++++
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~ 79 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLE--GQESLLLPCDVTSDEEITACFE 79 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcC--CCceEEEecCCCCHHHHHHHHH
Confidence 35789999999997 8999999999999995 898887753 33444444442 3578899999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
++.+.++++|++|||||+... ...+.+.+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 80 ~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~~~-- 153 (257)
T PRK08594 80 TIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE----GGSIVTLTYLGGER-- 153 (257)
T ss_pred HHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc----CceEEEEcccCCcc--
Confidence 999999999999999997642 234567889999999999999999999999999965 27999999998763
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+.+.+..|+.||+|+.+|+++++.|+ .+.||+||+|+||+++|++.
T Consensus 154 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~ 199 (257)
T PRK08594 154 ---------------------------------VVQNYNVMGVAKASLEASVKYLANDL-GKDGIRVNAISAGPIRTLSA 199 (257)
T ss_pred ---------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCCEEeeeecCcccCHhH
Confidence 44567789999999999999999999 77899999999999999843
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ...............+..++.+|+|+++.++||+++.+..++|+.+.+||..
T Consensus 200 ~~-~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg~ 253 (257)
T PRK08594 200 KG-VGGFNSILKEIEERAPLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSGY 253 (257)
T ss_pred hh-hccccHHHHHHhhcCCccccCCHHHHHHHHHHHcCcccccccceEEEECCch
Confidence 21 1111111111122234456789999999999999998888999999999864
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=277.39 Aligned_cols=225 Identities=21% Similarity=0.258 Sum_probs=198.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+.++++||||||+|||+++|++|+++| ++|+++.|+.++++.+.++++.. +..+.++.+|+++++++.++.+++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g-~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~ 81 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRG-YNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKER 81 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhc
Confidence 4688999999999999999999999999 69999999999999999999765 567899999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
...||+||||||+...+ .+.+.+.++.++++++|+.+...++++++|.|.+++. |.||||+|.++..
T Consensus 82 ~~~IdvLVNNAG~g~~g-~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~--G~IiNI~S~ag~~---------- 148 (265)
T COG0300 82 GGPIDVLVNNAGFGTFG-PFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGA--GHIINIGSAAGLI---------- 148 (265)
T ss_pred CCcccEEEECCCcCCcc-chhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ceEEEEechhhcC----------
Confidence 88999999999998664 7889999999999999999999999999999999874 8999999999985
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.|....|++||+++..|++.|+.|+ .+.||+|.+|+||++.|+........
T Consensus 149 -------------------------p~p~~avY~ATKa~v~~fSeaL~~EL-~~~gV~V~~v~PG~~~T~f~~~~~~~-- 200 (265)
T COG0300 149 -------------------------PTPYMAVYSATKAFVLSFSEALREEL-KGTGVKVTAVCPGPTRTEFFDAKGSD-- 200 (265)
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEEecCccccccccccccc--
Confidence 66889999999999999999999999 88999999999999999855421111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.....+...+++|+++|+..+..+....
T Consensus 201 -----~~~~~~~~~~~~~~~va~~~~~~l~~~k 228 (265)
T COG0300 201 -----VYLLSPGELVLSPEDVAEAALKALEKGK 228 (265)
T ss_pred -----cccccchhhccCHHHHHHHHHHHHhcCC
Confidence 1111123456899999999999987643
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=282.53 Aligned_cols=242 Identities=14% Similarity=0.132 Sum_probs=194.3
Q ss_pred CCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++||++|||||++ |||++++++|+++|+ +|++++|+. ..+...+++.........+++|+++.++++++++++.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhh
Confidence 7899999999996 999999999999995 899988873 334444444433345678899999999999999999999
Q ss_pred CCCccEEEEcccccCCCC----CCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 121 GRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
++++|+||||||+..... .+.+.+.++|++.+++|+.+++.+++.+.|.+.+ +|+||++||..+..
T Consensus 82 ~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~Iv~iss~~~~~------ 151 (262)
T PRK07984 82 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAER------ 151 (262)
T ss_pred cCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcC----CcEEEEEecCCCCC------
Confidence 999999999999763211 1446788999999999999999999999987643 37999999987753
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||+|+.+|++.++.|+ .+.||+||+|+||+++|++.. ..
T Consensus 152 -----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~~-~~ 200 (262)
T PRK07984 152 -----------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAAS-GI 200 (262)
T ss_pred -----------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCcEEeeeecCcccchHHh-cC
Confidence 45677899999999999999999999 888999999999999997432 11
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..............+..++.+|+|++..++||+++....++|+.+..|+..
T Consensus 201 ~~~~~~~~~~~~~~p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg~ 251 (262)
T PRK07984 201 KDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 251 (262)
T ss_pred CchHHHHHHHHHcCCCcCCCCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 111011111112334567889999999999999998888999999999864
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=282.57 Aligned_cols=242 Identities=12% Similarity=0.098 Sum_probs=193.4
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
-+++|++|||||+ +|||+++|+.|+++|+ +|++++|++...+ ..+++...-.....+++|+++.++++++++++.+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~-~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 84 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKK-RVEPLAAELGAFVAGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHH-HHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHH
Confidence 4789999999997 8999999999999995 8888888742222 2222211112356789999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||+... ..++.+.+.++|++.+++|+.+++.++++++|.|.+ +|+||++||..+..
T Consensus 85 ~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~----~g~Iv~iss~~~~~------ 154 (272)
T PRK08159 85 KWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD----GGSILTLTYYGAEK------ 154 (272)
T ss_pred hcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC----CceEEEEecccccc------
Confidence 99999999999998642 135567889999999999999999999999999864 37999999977652
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||+|+.+|+++|+.|+ .+.||+||+|+||+++|++... .
T Consensus 155 -----------------------------~~p~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~-~ 203 (272)
T PRK08159 155 -----------------------------VMPHYNVMGVAKAALEASVKYLAVDL-GPKNIRVNAISAGPIKTLAASG-I 203 (272)
T ss_pred -----------------------------CCCcchhhhhHHHHHHHHHHHHHHHh-cccCeEEEEeecCCcCCHHHhc-C
Confidence 45677899999999999999999999 7889999999999999974321 1
Q ss_pred hhhhhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ........ ...+.+++.+|+|+|+.++||+++.+..++|+.+..|+..
T Consensus 204 ~~-~~~~~~~~~~~~p~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 204 GD-FRYILKWNEYNAPLRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred Cc-chHHHHHHHhCCcccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 11 01111111 1234567789999999999999988888999999999975
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=282.40 Aligned_cols=282 Identities=29% Similarity=0.390 Sum_probs=212.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+..+...+.+. ++.++++|+++.++++++++++.+.+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~----~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGID----GVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh----hCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999995 99999999877766655553 37889999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||..... .+.+.++|+..+++|+.+++.++++++|.+.+++ .++||++||..+..+. .
T Consensus 98 ~~iD~li~nAg~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~--------~ 164 (315)
T PRK06196 98 RRIDILINNAGVMACP---ETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA--GARVVALSSAGHRRSP--------I 164 (315)
T ss_pred CCCCEEEECCCCCCCC---CccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCeEEEECCHHhccCC--------C
Confidence 9999999999986432 2456789999999999999999999999998764 3799999997654211 1
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+.++ +...+++++..|+.||++++.+++.+++++ .+.||++++|+||++.|++... ......
T Consensus 165 ~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~-~~~gi~v~~v~PG~v~t~~~~~-~~~~~~ 227 (315)
T PRK06196 165 RWDDP---------------HFTRGYDKWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILTPLQRH-LPREEQ 227 (315)
T ss_pred Ccccc---------------CccCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCCcccCCcccc-CChhhh
Confidence 11111 112355677899999999999999999998 7789999999999999985432 111100
Q ss_pred h---hcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecCCCCccccc-----ccchhccCHHHHHHHHHHHH
Q 018331 282 L---LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDSASFEN-----QLSQEASDVEKARKVWEISE 352 (358)
Q Consensus 282 ~---~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d~~~~~~~~-----~~~~~~~~~~~~~~~w~~~~ 352 (358)
. ...........++.+|+++|..+++|++.+... .+|.|+..++...+... .......|.+.++++|+.|+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lW~~s~ 307 (315)
T PRK06196 228 VALGWVDEHGNPIDPGFKTPAQGAATQVWAATSPQLAGMGGLYCEDCDIAEPTPKDAPWSGVRPHAIDPEAAARLWALSA 307 (315)
T ss_pred hhhhhhhhhhhhhhhhcCCHhHHHHHHHHHhcCCccCCCCCeEeCCCcccccCCcccccCCCCcccCCHHHHHHHHHHHH
Confidence 0 000000111114579999999999999876654 56766643322211111 22445678999999999999
Q ss_pred HHhcCC
Q 018331 353 KLVGLA 358 (358)
Q Consensus 353 ~~~~~~ 358 (358)
++++++
T Consensus 308 ~~~~~~ 313 (315)
T PRK06196 308 ALTGVD 313 (315)
T ss_pred HHHCCC
Confidence 999864
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=280.31 Aligned_cols=241 Identities=15% Similarity=0.097 Sum_probs=190.9
Q ss_pred cCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.+++|++||||| ++|||++++++|+++|+ +|++++|.. +.++...+++ + ....+++|+++.+++++++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEF---G-SDLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhc---C-CcceeeccCCCHHHHHHHHHH
Confidence 478999999996 68999999999999995 888876542 2333332222 2 235789999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCC----CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
+.+.++++|++|||||..... ..+.+.+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 78 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~----~g~Ii~iss~~~~~-- 151 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSD----DASLLTLSYLGAER-- 151 (260)
T ss_pred HHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCC----CceEEEEecccccc--
Confidence 999999999999999986431 12345788999999999999999999999999953 37999999988753
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+.+++..|+.||+|+..|+++++.|+ +++||+||+|+||+++|++.
T Consensus 152 ---------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~ 197 (260)
T PRK06997 152 ---------------------------------VVPNYNTMGLAKASLEASVRYLAVSL-GPKGIRANGISAGPIKTLAA 197 (260)
T ss_pred ---------------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCccccchh
Confidence 44567789999999999999999999 88899999999999999743
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
. ................+.+++.+|+|+++.++||+++++..++|+.+..||...
T Consensus 198 ~-~~~~~~~~~~~~~~~~p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg~~ 252 (260)
T PRK06997 198 S-GIKDFGKILDFVESNAPLRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSGFN 252 (260)
T ss_pred c-cccchhhHHHHHHhcCcccccCCHHHHHHHHHHHhCccccCcceeEEEEcCChh
Confidence 2 111101111111223355678899999999999999988889999999998753
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=285.54 Aligned_cols=245 Identities=16% Similarity=0.115 Sum_probs=194.0
Q ss_pred ccCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC---------C-C---CceEEEEecC-
Q 018331 41 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------A-K---ENYTIMHLDL- 104 (358)
Q Consensus 41 ~~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~---------~-~---~~i~~~~~Dl- 104 (358)
++|+||++||||| ++|||+++|+.|++.|+ +|++ +|+.+.++.....+.. . + .....+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga-~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 82 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGA-EILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAV 82 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeeccee
Confidence 5699999999999 89999999999999997 8888 6776676666544432 1 1 1146788998
Q ss_pred -CC------------------HHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 105 -AS------------------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 105 -~~------------------~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
++ .++++++++++.+.++++|+||||||... ...++.+.+.++|++++++|+.+++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~ 162 (303)
T PLN02730 83 FDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQ 162 (303)
T ss_pred cCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 33 34899999999999999999999998642 22467788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh-hhhHHhHHHHHHH
Q 018331 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 243 (358)
Q Consensus 165 ~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~al~~~ 243 (358)
+++|.|+++ |+||++||..+.. +.+++ ..|+.||+|+..|
T Consensus 163 ~~~p~m~~~----G~II~isS~a~~~-----------------------------------~~p~~~~~Y~asKaAl~~l 203 (303)
T PLN02730 163 HFGPIMNPG----GASISLTYIASER-----------------------------------IIPGYGGGMSSAKAALESD 203 (303)
T ss_pred HHHHHHhcC----CEEEEEechhhcC-----------------------------------CCCCCchhhHHHHHHHHHH
Confidence 999999763 7999999988763 33433 4799999999999
Q ss_pred HHHHHHhhccc-CCcEEEEecCCcccCCcccccchhhhhhhcch-hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 244 MQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 244 ~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
+++|+.|+ .+ +||+||+|+||+++|++... . +........ ....+..++.+|+|++..++||+++....++|+.+
T Consensus 204 ~~~la~El-~~~~gIrVn~V~PG~v~T~~~~~-~-~~~~~~~~~~~~~~pl~r~~~peevA~~~~fLaS~~a~~itG~~l 280 (303)
T PLN02730 204 TRVLAFEA-GRKYKIRVNTISAGPLGSRAAKA-I-GFIDDMIEYSYANAPLQKELTADEVGNAAAFLASPLASAITGATI 280 (303)
T ss_pred HHHHHHHh-CcCCCeEEEEEeeCCccCchhhc-c-cccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEE
Confidence 99999999 64 79999999999999986532 2 110111111 11223356789999999999999988888999999
Q ss_pred ecCCCCcc
Q 018331 322 SWNKDSAS 329 (358)
Q Consensus 322 ~~d~~~~~ 329 (358)
..|+....
T Consensus 281 ~vdGG~~~ 288 (303)
T PLN02730 281 YVDNGLNA 288 (303)
T ss_pred EECCCccc
Confidence 99887543
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=277.84 Aligned_cols=247 Identities=18% Similarity=0.125 Sum_probs=204.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+ .++...+.+...+.++.++++|+++.+++.++++++.+
T Consensus 4 ~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~ 82 (254)
T PRK06114 4 FDLDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEA 82 (254)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999998753 44556666655566788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.++. .++||++||..+..+.
T Consensus 83 ~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~~~------- 152 (254)
T PRK06114 83 ELGALTLAVNAAGIANA-NPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENG--GGSIVNIASMSGIIVN------- 152 (254)
T ss_pred HcCCCCEEEECCCCCCC-CChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CcEEEEECchhhcCCC-------
Confidence 99999999999998754 3556788999999999999999999999999998764 4799999998876411
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+......|+.+|+|+..++++++.|+ .+.||+||+|+||+++|++......
T Consensus 153 --------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~PG~i~t~~~~~~~~-- 203 (254)
T PRK06114 153 --------------------------RGLLQAHYNASKAGVIHLSKSLAMEW-VGRGIRVNSISPGYTATPMNTRPEM-- 203 (254)
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeecCccCcccccccc--
Confidence 11235689999999999999999999 7789999999999999986542111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|++..++||+++.+.+++|+.+..||+.
T Consensus 204 ~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg~ 251 (254)
T PRK06114 204 VHQTKLFEEQTPMQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGGF 251 (254)
T ss_pred hHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEEECcCE
Confidence 011111222345567889999999999999998889999999999875
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=283.09 Aligned_cols=246 Identities=18% Similarity=0.152 Sum_probs=200.6
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
..++++|++|||||++|||+++++.|+++|+ +|++++|+. ...+...+.+...+.++.++.+|+++.+++.++++++
T Consensus 44 ~~~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 122 (294)
T PRK07985 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEA 122 (294)
T ss_pred CCccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHH
Confidence 3468999999999999999999999999995 888887653 3344444444444567889999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|++|||||.......+.+.+.++|++++++|+.+++.++++++|+|.+. ++||++||..+..
T Consensus 123 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~----g~iv~iSS~~~~~------- 191 (294)
T PRK07985 123 HKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG----ASIITTSSIQAYQ------- 191 (294)
T ss_pred HHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC----CEEEEECCchhcc-------
Confidence 99999999999999975433456678899999999999999999999999998653 7999999998763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++++++.++.++ .+.||+||+|+||+|+|++......
T Consensus 192 ----------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~i~PG~v~t~~~~~~~~ 242 (294)
T PRK07985 192 ----------------------------PSPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQ 242 (294)
T ss_pred ----------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hHhCcEEEEEECCcCccccccccCC
Confidence 44567789999999999999999999 7789999999999999986432111
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+. ..........+.+++.+|+|+|.+++||+++.+..++|+.+..||..
T Consensus 243 ~~-~~~~~~~~~~~~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG~ 291 (294)
T PRK07985 243 TQ-DKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_pred CH-HHHHHHhccCCCCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCCe
Confidence 10 00111112334456789999999999999998888999999999864
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.08 Aligned_cols=240 Identities=15% Similarity=0.088 Sum_probs=192.0
Q ss_pred cCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++++|+++|||| ++|||++++++|+++|+ +|++++|+. +.++...+++. .++.++++|+++.++++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGFGRALRLTERIAKRLP---EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecCccchhHHHHHHHhcC---CCCcEEeCCCCCHHHHHHHHHHH
Confidence 578999999999 89999999999999995 999998764 33444444442 36778999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCC---CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 118 RRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
.+.++++|+||||||+.... ..+.+.+.++|++.+++|+.+++.++++++|+|++ +|+||++++....
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~----~g~Iv~is~~~~~----- 150 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE----GGSIVGLDFDATV----- 150 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc----CceEEEEeecccc-----
Confidence 99999999999999986321 24557788999999999999999999999999974 2799999864321
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.+.+..|+.||+|+.+|+++|+.|+ .+.||+||+|+||+++|++...
T Consensus 151 -------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~ 198 (256)
T PRK07889 151 -------------------------------AWPAYDWMGVAKAALESTNRYLARDL-GPRGIRVNLVAAGPIRTLAAKA 198 (256)
T ss_pred -------------------------------cCCccchhHHHHHHHHHHHHHHHHHh-hhcCeEEEeeccCcccChhhhc
Confidence 33567789999999999999999999 7889999999999999985422
Q ss_pred cchhhhhhhcchhHHhhhc-CccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 275 EHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...............+.. ++.+|+|+|+.++||+++....++|+++.+|+..
T Consensus 199 -~~~~~~~~~~~~~~~p~~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg~ 251 (256)
T PRK07889 199 -IPGFELLEEGWDERAPLGWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGGA 251 (256)
T ss_pred -ccCcHHHHHHHHhcCccccccCCHHHHHHHHHHHhCcccccccceEEEEcCce
Confidence 111001001111222333 4789999999999999998888999999999864
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=277.01 Aligned_cols=247 Identities=18% Similarity=0.160 Sum_probs=208.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||+||||++++++|+++|+ +|++++|+.+.++...+.+...+.++.++++|+++.+++.++++++.+.+
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 89999999887777777776666789999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|......++.+.+.++|++++++|+.+++.++++++|.+.++. .++||++||..+..
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~sS~~~~~----------- 149 (253)
T PRK06172 83 GRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQG--GGAIVNTASVAGLG----------- 149 (253)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhcc-----------
Confidence 99999999999865444566788999999999999999999999999998764 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|+++++|++.++.++ .+.||+|++|+||+++|++..........
T Consensus 150 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~~i~v~~i~PG~v~t~~~~~~~~~~~~ 204 (253)
T PRK06172 150 ------------------------AAPKMSIYAASKHAVIGLTKSAAIEY-AKKGIRVNAVCPAVIDTDMFRRAYEADPR 204 (253)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhcccChH
Confidence 45678899999999999999999999 77899999999999999865432110001
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+++++.+++|+++....++|+++..|+..
T Consensus 205 ~~~~~~~~~~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg~ 250 (253)
T PRK06172 205 KAEFAAAMHPVGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGGA 250 (253)
T ss_pred HHHHHhccCCCCCccCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 1111222334456789999999999999998888999999999863
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=277.79 Aligned_cols=246 Identities=17% Similarity=0.139 Sum_probs=205.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.++++...+++... +.++.++.+|+++.+++.++++++.+
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 58899999999999999999999999995 9999999988777766666443 34788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 84 ~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 151 (265)
T PRK07062 84 RFGGVDMLVNNAGQGRV-STFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA--AASIVCVNSLLALQ--------- 151 (265)
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CcEEEEeccccccC---------
Confidence 99999999999998643 3566788999999999999999999999999998764 38999999998763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.+|+++.+|+++++.|+ .+.||+||+|+||+++|++........
T Consensus 152 --------------------------~~~~~~~y~asKaal~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~ 204 (265)
T PRK07062 152 --------------------------PEPHMVATSAARAGLLNLVKSLATEL-APKGVRVNSILLGLVESGQWRRRYEAR 204 (265)
T ss_pred --------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccchhhhHHHHh
Confidence 44567889999999999999999999 778999999999999998654322100
Q ss_pred ------hhhhcch---hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ------FRLLFPP---FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ------~~~~~~~---~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....... ....+.+++.+|+++++.++||+++.+..++|+.+..||..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg~ 261 (265)
T PRK07062 205 ADPGQSWEAWTAALARKKGIPLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGGF 261 (265)
T ss_pred hccCCChHHHHHHHhhcCCCCcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCce
Confidence 0000000 11234567889999999999999988878999999999863
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=281.56 Aligned_cols=242 Identities=19% Similarity=0.160 Sum_probs=200.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---------HHHHHHHHHhcCCCCceEEEEecCCCHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~ 112 (358)
.+++|++|||||++|||++++++|+++|+ +|++++|+. +.++...+++...+.++.++.+|+++.+++.+
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 81 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAAN 81 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHH
Confidence 37899999999999999999999999996 888888765 56666666776556778899999999999999
Q ss_pred HHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CCCeEEEEecCCC
Q 018331 113 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITG 188 (358)
Q Consensus 113 ~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~g~iv~vsS~~~ 188 (358)
+++++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|+++.. ..|+||++||..+
T Consensus 82 ~~~~~~~~~g~id~lv~nAG~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 82 LVDAAVETFGGLDVLVNNAGILRD-RMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHHHhcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 999999999999999999998754 45678899999999999999999999999999976421 1379999999887
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. +.+++..|+.||+|+.+|+++++.|+ .+.||+||+|+|| +.
T Consensus 161 ~~-----------------------------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~Pg-~~ 203 (286)
T PRK07791 161 LQ-----------------------------------GSVGQGNYSAAKAGIAALTLVAAAEL-GRYGVTVNAIAPA-AR 203 (286)
T ss_pred Cc-----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-HHhCeEEEEECCC-CC
Confidence 74 45678899999999999999999999 7789999999999 78
Q ss_pred CCcccccchhhhhhhcchhHHhhhc--CccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 269 TTGLFREHIPLFRLLFPPFQKYITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 269 t~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
|++..... .. .....+.. ++.+|+|+++.++||+++....++|+++.+||....
T Consensus 204 T~~~~~~~----~~---~~~~~~~~~~~~~~pedva~~~~~L~s~~~~~itG~~i~vdgG~~~ 259 (286)
T PRK07791 204 TRMTETVF----AE---MMAKPEEGEFDAMAPENVSPLVVWLGSAESRDVTGKVFEVEGGKIS 259 (286)
T ss_pred CCcchhhH----HH---HHhcCcccccCCCCHHHHHHHHHHHhCchhcCCCCcEEEEcCCceE
Confidence 87542211 00 00111111 356999999999999998888899999999997643
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=276.71 Aligned_cols=248 Identities=21% Similarity=0.207 Sum_probs=205.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+.+.||++|||||++|||+++|.+|++.|| +|++++|+.+.++.....+... +.++..+.||+++.+++++++++.
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~ 82 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFA 82 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHH
Confidence 468999999999999999999999999997 9999999998888877776543 456999999999999999999999
Q ss_pred Hhc-CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhH-HHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 118 RRS-GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG-HFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 118 ~~~-~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~-~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.++ +|+||++|||||.......+.+.+.+.|++++++|+.| .+.+.+.+.+++.+++ ++.|+++||..+..
T Consensus 83 ~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~--gg~I~~~ss~~~~~----- 155 (270)
T KOG0725|consen 83 VEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSK--GGSIVNISSVAGVG----- 155 (270)
T ss_pred HHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcC--CceEEEEecccccc-----
Confidence 998 79999999999998765567899999999999999995 6667777777777755 48999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchh-hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+..+. ..|+.+|+|++.|+|.+|.|+ .+.|||||+|+||++.|+. ..
T Consensus 156 ------------------------------~~~~~~~~Y~~sK~al~~ltr~lA~El-~~~gIRvN~v~PG~i~T~~-~~ 203 (270)
T KOG0725|consen 156 ------------------------------PGPGSGVAYGVSKAALLQLTRSLAKEL-AKHGIRVNSVSPGLVKTSL-RA 203 (270)
T ss_pred ------------------------------CCCCCcccchhHHHHHHHHHHHHHHHH-hhcCcEEEEeecCcEeCCc-cc
Confidence 21222 789999999999999999999 8899999999999999985 11
Q ss_pred cch--hhhhhhcc---hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 275 EHI--PLFRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 275 ~~~--~~~~~~~~---~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
... ........ .....+.+++..|+|++..++||+++...+++|+-+..|+...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~p~gr~g~~~eva~~~~fla~~~asyitG~~i~vdgG~~ 262 (270)
T KOG0725|consen 204 AGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFLASDDASYITGQTIIVDGGFT 262 (270)
T ss_pred cccccchhhHHhhhhccccccccCCccCHHHHHHhHHhhcCcccccccCCEEEEeCCEE
Confidence 110 00111111 2234467789999999999999999987799999999999754
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=278.15 Aligned_cols=246 Identities=11% Similarity=0.094 Sum_probs=200.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++|++|||||++|||+++++.|+++|+ +|++++| +.+.++...+.+.. .+.++.++++|+++.++++++++++.
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 82 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKID 82 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999996 8887754 55566666555543 35578999999999999999999999
Q ss_pred hcCCCccEEEEcccccCC-----CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 119 RSGRPLDVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~-----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
+.++++|+||||||.... ...+.+.+.++|++.+++|+.+++.+++.++|.|.+.+ .++||++||..+..
T Consensus 83 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--- 157 (260)
T PRK08416 83 EDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVG--GGSIISLSSTGNLV--- 157 (260)
T ss_pred HhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccC--CEEEEEEecccccc---
Confidence 999999999999987521 13455678899999999999999999999999998764 37999999987653
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.+++..|+.||+|++.|++.++.|+ .++||+||+|+||+++|++..
T Consensus 158 --------------------------------~~~~~~~Y~asK~a~~~~~~~la~el-~~~gi~v~~v~PG~i~T~~~~ 204 (260)
T PRK08416 158 --------------------------------YIENYAGHGTSKAAVETMVKYAATEL-GEKNIRVNAVSGGPIDTDALK 204 (260)
T ss_pred --------------------------------CCCCcccchhhHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccChhhh
Confidence 34567789999999999999999999 778999999999999998643
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ...............+..++.+|+|++..++||+++....++|+.+..|+.
T Consensus 205 ~-~~~~~~~~~~~~~~~~~~r~~~p~~va~~~~~l~~~~~~~~~G~~i~vdgg 256 (260)
T PRK08416 205 A-FTNYEEVKAKTEELSPLNRMGQPEDLAGACLFLCSEKASWLTGQTIVVDGG 256 (260)
T ss_pred h-ccCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhhcccCcEEEEcCC
Confidence 2 111111111112233455688999999999999998887899999999885
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=273.82 Aligned_cols=247 Identities=21% Similarity=0.218 Sum_probs=206.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRER 82 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999988877777777655567889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||......++.+.+.+.|++.+++|+.+++.++++++|++.++. .++||++||..+..
T Consensus 83 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 150 (252)
T PRK07035 83 HGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQG--GGSIVNVASVNGVS---------- 150 (252)
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CcEEEEECchhhcC----------
Confidence 999999999999764334556778899999999999999999999999998764 37999999987763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||++++.|++++++++ .+.||+|++|+||+++|++....... .
T Consensus 151 -------------------------~~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~-~ 203 (252)
T PRK07035 151 -------------------------PGDFQGIYSITKAAVISMTKAFAKEC-APFGIRVNALLPGLTDTKFASALFKN-D 203 (252)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeccccCcccccccCC-H
Confidence 44567789999999999999999999 77899999999999999854332111 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+|+|+.++||+++....++|+++.+|++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg~ 250 (252)
T PRK07035 204 AILKQALAHIPLRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGGY 250 (252)
T ss_pred HHHHHHHccCCCCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCCc
Confidence 11111222234456789999999999999998888999999999864
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=275.15 Aligned_cols=243 Identities=16% Similarity=0.152 Sum_probs=198.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||++|||||++|||++++++|+++|+ +|++++++.. +...+.+...+.++.++++|+++.++++++++++.+.+
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 83 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEF 83 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 68899999999999999999999999995 8888877542 22333333334578899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|++|||||.... ..+.+.+.++|++++++|+.+++.++++++|.|.+++. +|+||++||..+..
T Consensus 84 ~~~D~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 150 (253)
T PRK08993 84 GHIDILVNNAGLIRR-EDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGN-GGKIINIASMLSFQ----------- 150 (253)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEECchhhcc-----------
Confidence 999999999998643 34667889999999999999999999999999977532 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|++++++.++.++ .+.||+||+|+||+++|++... ......
T Consensus 151 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pG~v~T~~~~~-~~~~~~ 204 (253)
T PRK08993 151 ------------------------GGIRVPSYTASKSGVMGVTRLMANEW-AKHNINVNAIAPGYMATNNTQQ-LRADEQ 204 (253)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccCcchhh-hccchH
Confidence 33456789999999999999999999 7789999999999999986532 111001
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+.+++.+|+|+++.++||+++.+..++|+.+..|+.
T Consensus 205 ~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg 249 (253)
T PRK08993 205 RSAEILDRIPAGRWGLPSDLMGPVVFLASSASDYINGYTIAVDGG 249 (253)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 111222344556788999999999999999988999999999985
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=280.56 Aligned_cols=246 Identities=21% Similarity=0.163 Sum_probs=202.1
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
...|++|++|||||++|||+++++.|+++|+ +|+++.++.+ ..+...+.+...+.++.++.+|+++.++++++++++
T Consensus 50 ~~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 128 (300)
T PRK06128 50 FGRLQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERA 128 (300)
T ss_pred ccccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHH
Confidence 3468899999999999999999999999995 8888777532 344555555555667889999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|.+. ++||++||..++.
T Consensus 129 ~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~iv~~sS~~~~~------- 197 (300)
T PRK06128 129 VKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPG----ASIINTGSIQSYQ------- 197 (300)
T ss_pred HHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcC----CEEEEECCccccC-------
Confidence 99999999999999986544566788999999999999999999999999998753 6999999998773
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+++..|+.||++++.|+++++.++ .+.||+||+|+||+++|++......
T Consensus 198 ----------------------------~~~~~~~Y~asK~a~~~~~~~la~el-~~~gI~v~~v~PG~i~t~~~~~~~~ 248 (300)
T PRK06128 198 ----------------------------PSPTLLDYASTKAAIVAFTKALAKQV-AEKGIRVNAVAPGPVWTPLQPSGGQ 248 (300)
T ss_pred ----------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEECcCcCCCcccCCC
Confidence 44567789999999999999999999 7789999999999999996532111
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ...........+.+++..|+|++..++||+++....++|+.+..|+..
T Consensus 249 ~-~~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~~G~~~~v~gg~ 297 (300)
T PRK06128 249 P-PEKIPDFGSETPMKRPGQPVEMAPLYVLLASQESSYVTGEVFGVTGGL 297 (300)
T ss_pred C-HHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCccCcEEeeCCCE
Confidence 1 011111112334567789999999999999988878999999999864
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=275.22 Aligned_cols=196 Identities=27% Similarity=0.329 Sum_probs=172.0
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CC-ceEEEEecCCCHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KE-NYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~-~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.+.++.||+++|||||+|||.++|.+|+++|+ .++++.|....++.+.+++.+. .. +++++++|++|.+++.+++++
T Consensus 6 ~~e~~~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~ 84 (282)
T KOG1205|consen 6 FMERLAGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEW 84 (282)
T ss_pred cHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHH
Confidence 34578999999999999999999999999996 8888888877888776666443 22 599999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+...||++|+||||||+.. .....+.+.+++...|++|++|+..++++++|+|+++. +|+||++||++|..
T Consensus 85 ~~~~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~--~GhIVvisSiaG~~------ 155 (282)
T KOG1205|consen 85 AIRHFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN--DGHIVVISSIAGKM------ 155 (282)
T ss_pred HHHhcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC--CCeEEEEecccccc------
Confidence 9999999999999999987 56777888899999999999999999999999999986 49999999999985
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCC--cEEEEecCCcccCCcccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLFR 274 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~g--I~v~~v~PG~v~t~~~~~ 274 (358)
+.|....|++||+|+.+|+.+|..|+ .+.+ |++ .|+||+|+|.....
T Consensus 156 -----------------------------~~P~~~~Y~ASK~Al~~f~etLR~El-~~~~~~i~i-~V~PG~V~Te~~~~ 204 (282)
T KOG1205|consen 156 -----------------------------PLPFRSIYSASKHALEGFFETLRQEL-IPLGTIIII-LVSPGPIETEFTGK 204 (282)
T ss_pred -----------------------------CCCcccccchHHHHHHHHHHHHHHHh-hccCceEEE-EEecCceeecccch
Confidence 55667799999999999999999999 5545 566 99999999985544
Q ss_pred c
Q 018331 275 E 275 (358)
Q Consensus 275 ~ 275 (358)
.
T Consensus 205 ~ 205 (282)
T KOG1205|consen 205 E 205 (282)
T ss_pred h
Confidence 3
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=276.89 Aligned_cols=284 Identities=31% Similarity=0.426 Sum_probs=214.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.+..+...+.+... +.++.++.+|+++.++++++++++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~ 90 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALR 90 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999987776665555432 3568899999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||..... .+.+.++++..+++|+.+++.+++.++|.+++.. .++||++||..+....
T Consensus 91 ~~~~~iD~li~nAg~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~--~~~iV~vSS~~~~~~~------ 159 (306)
T PRK06197 91 AAYPRIDLLINNAGVMYTP---KQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP--GSRVVTVSSGGHRIRA------ 159 (306)
T ss_pred hhCCCCCEEEECCccccCC---CccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC--CCEEEEECCHHHhccC------
Confidence 9999999999999986432 2457789999999999999999999999998764 3799999998754311
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEE--ecCCcccCCcccccc
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFAS--LYPGCIATTGLFREH 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~--v~PG~v~t~~~~~~~ 276 (358)
...+.+. +...++++...|+.||+++++|++.+++++ .+.|+++++ ++||+|.|++.. +.
T Consensus 160 -~~~~~~~---------------~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l-~~~~i~v~~v~~~PG~v~T~~~~-~~ 221 (306)
T PRK06197 160 -AIHFDDL---------------QWERRYNRVAAYGQSKLANLLFTYELQRRL-AAAGATTIAVAAHPGVSNTELAR-NL 221 (306)
T ss_pred -CCCcccc---------------CcccCCCcHHHHHHHHHHHHHHHHHHHHHh-hcCCCCeEEEEeCCCcccCcccc-cC
Confidence 0011111 111245667899999999999999999998 667876655 579999998543 22
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc----cccccchhccCHHHHHHHHHHHH
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS----FENQLSQEASDVEKARKVWEISE 352 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~w~~~~ 352 (358)
..........+. .....++++.+..+++++.++.. .+|.|+.+|+.... .....+....+++.++++|+.|+
T Consensus 222 ~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lw~~~~ 297 (306)
T PRK06197 222 PRALRPVATVLA---PLLAQSPEMGALPTLRAATDPAV-RGGQYYGPDGFGEQRGYPKVVASSAQSHDEDLQRRLWAVSE 297 (306)
T ss_pred cHHHHHHHHHHH---hhhcCCHHHHHHHHHHHhcCCCc-CCCeEEccCcccccCCCCccCCCccccCCHHHHHHHHHHHH
Confidence 221111111111 11235788899999988876643 68999988765421 11123445678999999999999
Q ss_pred HHhcCC
Q 018331 353 KLVGLA 358 (358)
Q Consensus 353 ~~~~~~ 358 (358)
++++++
T Consensus 298 ~~~~~~ 303 (306)
T PRK06197 298 ELTGVS 303 (306)
T ss_pred HHHCCC
Confidence 999863
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=275.40 Aligned_cols=247 Identities=21% Similarity=0.213 Sum_probs=206.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||++|||++++++|+++|+ +|++++|+.+..+...+++...+.++.++++|+++.+++..+++++.+.+
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 85 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF 85 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999877777777776556678999999999999999999999999
Q ss_pred CCccEEEEcccccCCC--------------CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPT--------------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~--------------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+++|+||||||..... ..+.+.+.++|++.+++|+.+++.++++++|.|.+.+ .++||++||..
T Consensus 86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~ 163 (278)
T PRK08277 86 GPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRK--GGNIINISSMN 163 (278)
T ss_pred CCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccch
Confidence 9999999999975332 2345678899999999999999999999999998764 38999999998
Q ss_pred CCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
+.. +.++...|+.||+|++.++++++.++ .+.||+||+|+||++
T Consensus 164 ~~~-----------------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~girvn~v~Pg~v 207 (278)
T PRK08277 164 AFT-----------------------------------PLTKVPAYSAAKAAISNFTQWLAVHF-AKVGIRVNAIAPGFF 207 (278)
T ss_pred hcC-----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeccC
Confidence 873 45667789999999999999999999 778999999999999
Q ss_pred cCCcccccchh----hhhhhcchhHHhhhcCccchhHHhhhhhhhhcC-CCCCCCceeeecCCCC
Q 018331 268 ATTGLFREHIP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKDS 327 (358)
Q Consensus 268 ~t~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~G~~~~~d~~~ 327 (358)
+|++...-... ............+.+++.+|+|+|++++||+++ .+..++|+.+..||..
T Consensus 208 ~t~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~~i~vdgG~ 272 (278)
T PRK08277 208 LTEQNRALLFNEDGSLTERANKILAHTPMGRFGKPEELLGTLLWLADEKASSFVTGVVLPVDGGF 272 (278)
T ss_pred cCcchhhhhccccccchhHHHHHhccCCccCCCCHHHHHHHHHHHcCccccCCcCCCEEEECCCe
Confidence 99853211000 001111122334556788999999999999998 7888999999999864
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=272.61 Aligned_cols=242 Identities=16% Similarity=0.138 Sum_probs=199.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... .++.++++|+++.++++++++++.+.++++|+
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~ 79 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEY-GEVYAVKADLSDKDDLKNLVKEAWELLGGIDA 79 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhc-CCceEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence 699999999999999999999995 9999999988877777776543 36889999999999999999999999999999
Q ss_pred EEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 127 LVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 127 lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
||||||.... ...+.+.+.++|.+.+.+|+.+++.+++.++|.|.+.. ..|+||++||..+..
T Consensus 80 li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~~g~iv~isS~~~~~--------------- 143 (259)
T PRK08340 80 LVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKK-MKGVLVYLSSVSVKE--------------- 143 (259)
T ss_pred EEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCEEEEEeCcccCC---------------
Confidence 9999997532 23455778899999999999999999999999886432 148999999988763
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-------
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP------- 278 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~------- 278 (358)
+.++...|+.+|+++.+|+++++.++ .+.||+||+|+||+++|++.......
T Consensus 144 --------------------~~~~~~~y~~sKaa~~~~~~~la~e~-~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~ 202 (259)
T PRK08340 144 --------------------PMPPLVLADVTRAGLVQLAKGVSRTY-GGKGIRAYTVLLGSFDTPGARENLARIAEERGV 202 (259)
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEeccCcccCccHHHHHHhhhhccCC
Confidence 44667789999999999999999999 78899999999999999965332110
Q ss_pred -hhhh-hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ........+.+++.+|+|+|++++||+++++.+++|+.+..||..
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dva~~~~fL~s~~~~~itG~~i~vdgg~ 253 (259)
T PRK08340 203 SFEETWEREVLERTPLKRTGRWEELGSLIAFLLSENAEYMLGSTIVFDGAM 253 (259)
T ss_pred chHHHHHHHHhccCCccCCCCHHHHHHHHHHHcCcccccccCceEeecCCc
Confidence 0000 011223345567889999999999999998889999999999864
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=270.91 Aligned_cols=245 Identities=17% Similarity=0.167 Sum_probs=206.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+..+++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999995 99999999888877777776656678899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... .++.+.+.++|++++++|+.+++.+++++++.+.+++ .++||++||..+..
T Consensus 85 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 150 (254)
T PRK08085 85 GPIDVLINNAGIQRR-HPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQ--AGKIINICSMQSEL----------- 150 (254)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEccchhcc-----------
Confidence 999999999998643 3566788999999999999999999999999997654 38999999987653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|+++..+++++++++ .+.||++|+|+||+++|++....... ..
T Consensus 151 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pG~~~t~~~~~~~~~-~~ 204 (254)
T PRK08085 151 ------------------------GRDTITPYAASKGAVKMLTRGMCVEL-ARHNIQVNGIAPGYFKTEMTKALVED-EA 204 (254)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCCCCCcchhhhccC-HH
Confidence 34566789999999999999999999 77899999999999999865431110 00
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|++.+++||+++.+..++|+.+..||+.
T Consensus 205 ~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg~ 250 (254)
T PRK08085 205 FTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGM 250 (254)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCe
Confidence 0011112334566789999999999999998889999999999864
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=270.69 Aligned_cols=240 Identities=19% Similarity=0.166 Sum_probs=199.4
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecC-----------hHHHHHHHHHhcCCCCceEEEEecCCCH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASL 107 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~-----------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~ 107 (358)
.+|+||++|||||+ +|||++++++|+++|+ .|++++|+ ........+++...+.++.++++|+++.
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~ 80 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQN 80 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCH
Confidence 36899999999999 4999999999999996 88876532 2233344455555667899999999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+++.++++++.+.++++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|.++. .|+||++||..
T Consensus 81 ~~i~~~~~~~~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~ 157 (256)
T PRK12859 81 DAPKELLNKVTEQLGYPHILVNNAAYSTN-NDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKS--GGRIINMTSGQ 157 (256)
T ss_pred HHHHHHHHHHHHHcCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEEcccc
Confidence 99999999999999999999999998644 4567889999999999999999999999999998664 48999999988
Q ss_pred CCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
+.. +.+++..|+.+|+++..|+++++.++ .+.||+|++|+||++
T Consensus 158 ~~~-----------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~PG~i 201 (256)
T PRK12859 158 FQG-----------------------------------PMVGELAYAATKGAIDALTSSLAAEV-AHLGITVNAINPGPT 201 (256)
T ss_pred cCC-----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEEccc
Confidence 763 55678899999999999999999999 778999999999999
Q ss_pred cCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 268 ATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 268 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+|++...... .......+..++.+|+|+++.+++|+++.+..++|+++.+|+.
T Consensus 202 ~t~~~~~~~~------~~~~~~~~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 202 DTGWMTEEIK------QGLLPMFPFGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred cCCCCCHHHH------HHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 9985432110 0111222345577999999999999999888899999999986
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=271.61 Aligned_cols=244 Identities=19% Similarity=0.171 Sum_probs=203.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+ ...+...+.+...+.++.++++|+++.++++++++++.+.+
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999995 89999988 45555555555445678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|++|||+|.... .++.+.+.++|++.+++|+.+++.++++++|+|.+++ .++||++||..+..
T Consensus 90 g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 155 (258)
T PRK06935 90 GKIDILVNNAGTIRR-APLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQG--SGKIINIASMLSFQ----------- 155 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC--CeEEEEECCHHhcc-----------
Confidence 999999999998644 3556778899999999999999999999999998765 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+.+..|+.+|++++.+++++++++ .+.||+||+|+||+++|++..... ....
T Consensus 156 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~-~~~~ 209 (258)
T PRK06935 156 ------------------------GGKFVPAYTASKHGVAGLTKAFANEL-AAYNIQVNAIAPGYIKTANTAPIR-ADKN 209 (258)
T ss_pred ------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeccccccchhhcc-cChH
Confidence 34567789999999999999999999 778999999999999998543211 0001
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++.+|+|++..++||+++.+..++|+.+..|+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg~ 255 (258)
T PRK06935 210 RNDEILKRIPAGRWGEPDDLMGAAVFLASRASDYVNGHILAVDGGW 255 (258)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 1112223345567889999999999999998888999999999863
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=271.40 Aligned_cols=241 Identities=17% Similarity=0.131 Sum_probs=198.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.+++.++++++.+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 78 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---GERARFIATDITDDAAIERAVATVVARF 78 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCeeEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 9999999987766666554 3568899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||..... .. +.+.+.|++.+++|+.+++.++++++|+|+ +. .++||++||..+..
T Consensus 79 g~id~lv~~ag~~~~~-~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~--~g~ii~isS~~~~~----------- 142 (261)
T PRK08265 79 GRVDILVNLACTYLDD-GL-ASSRADWLAALDVNLVSAAMLAQAAHPHLA-RG--GGAIVNFTSISAKF----------- 142 (261)
T ss_pred CCCCEEEECCCCCCCC-cC-cCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cC--CcEEEEECchhhcc-----------
Confidence 9999999999986432 22 568899999999999999999999999997 32 48999999988764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|+++..+++.++.|+ .+.||++|+|+||+++|++...-......
T Consensus 143 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~~~t~~~~~~~~~~~~ 197 (261)
T PRK08265 143 ------------------------AQTGRWLYPASKAAIRQLTRSMAMDL-APDGIRVNSVSPGWTWSRVMDELSGGDRA 197 (261)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCEEEEEEccCCccChhhhhhcccchh
Confidence 44567789999999999999999999 77899999999999999864321100000
Q ss_pred hhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... ...+.+++.+|+|+|+.++||+++....++|+.+..||..
T Consensus 198 ~~~~~~~~~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg~ 244 (261)
T PRK08265 198 KADRVAAPFHLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGGY 244 (261)
T ss_pred HHHHhhcccCCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 000011 1124456789999999999999988888999999999874
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=272.29 Aligned_cols=242 Identities=19% Similarity=0.113 Sum_probs=197.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||++|||++++++|+++|+ .|++++|+.+.++...+.+ +.++.++++|+++.++++++++++.+.+
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---GDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999995 9999999987777665554 3468899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHh----HHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEG----FELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~----~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+++|+||||||.......+.+.+.+. |++++++|+.+++.++++++|.|.+.. |+||+++|..+..
T Consensus 79 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---g~iv~~sS~~~~~------- 148 (263)
T PRK06200 79 GKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASG---GSMIFTLSNSSFY------- 148 (263)
T ss_pred CCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcC---CEEEEECChhhcC-------
Confidence 99999999999864333444555554 899999999999999999999987653 7999999988763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|+++++.++ .+ +|+||+|+||+++|++......
T Consensus 149 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~el-~~-~Irvn~i~PG~i~t~~~~~~~~ 198 (263)
T PRK06200 149 ----------------------------PGGGGPLYTASKHAVVGLVRQLAYEL-AP-KIRVNGVAPGGTVTDLRGPASL 198 (263)
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hc-CcEEEEEeCCccccCCcCcccc
Confidence 34556789999999999999999999 55 5999999999999986432110
Q ss_pred h--------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCCC
Q 018331 278 P--------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~--------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~~ 327 (358)
. ............+.+++.+|+|+++.++||+++. +..++|+.+..||..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG~ 257 (263)
T PRK06200 199 GQGETSISDSPGLADMIAAITPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGGL 257 (263)
T ss_pred CCCCcccccccchhHHhhcCCCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCce
Confidence 0 0000111122345567889999999999999988 788999999999864
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=269.07 Aligned_cols=247 Identities=19% Similarity=0.170 Sum_probs=200.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
||++|||||++|||++++++|+++|+ +|++++|+...++...+.+...+.++.++++|+++.++++++++++.+.++++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 58999999999999999999999995 99999999877777766665555688999999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.... ..+.+.+.++|++++++|+.+++.++++++++|.+... .++||++||..+..
T Consensus 80 d~lI~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~-------------- 143 (252)
T PRK07677 80 DALINNAAGNFI-CPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGI-KGNIINMVATYAWD-------------- 143 (252)
T ss_pred cEEEECCCCCCC-CCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCC-CEEEEEEcChhhcc--------------
Confidence 999999997533 35567899999999999999999999999999876431 38999999998763
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||+|+.+|+++|+.++..+.||++++|+||+++|++.............
T Consensus 144 ---------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~ 202 (252)
T PRK07677 144 ---------------------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAK 202 (252)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHH
Confidence 33456789999999999999999998434699999999999997543222110001111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
......+..++.+|+++++.+.+|+++....++|+.+..|+....
T Consensus 203 ~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~~~ 247 (252)
T PRK07677 203 RTIQSVPLGRLGTPEEIAGLAYFLLSDEAAYINGTCITMDGGQWL 247 (252)
T ss_pred HHhccCCCCCCCCHHHHHHHHHHHcCccccccCCCEEEECCCeec
Confidence 111223445678999999999999998877899999999987543
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=271.00 Aligned_cols=235 Identities=20% Similarity=0.179 Sum_probs=194.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||++|||||++|||++++++|+++|+ +|++++|+.... .++.++++|+++.++++++++++.+.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~-----------~~~~~~~~D~~~~~~i~~~~~~~~~~~ 70 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSY-----------NDVDYFKVDVSNKEQVIKGIDYVISKY 70 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCcccc-----------CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 68899999999999999999999999995 999999975321 257899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|.++. .++||++||..+..
T Consensus 71 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 136 (258)
T PRK06398 71 GRIDILVNNAGIESY-GAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQD--KGVIINIASVQSFA----------- 136 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEeCcchhcc-----------
Confidence 999999999998643 4566789999999999999999999999999998764 48999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 277 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---- 277 (358)
+.+++..|+.||++++.|++.++.|+ .+ +|+||+|+||+++|++......
T Consensus 137 ------------------------~~~~~~~Y~~sKaal~~~~~~la~e~-~~-~i~vn~i~PG~v~T~~~~~~~~~~~~ 190 (258)
T PRK06398 137 ------------------------VTRNAAAYVTSKHAVLGLTRSIAVDY-AP-TIRCVAVCPGSIRTPLLEWAAELEVG 190 (258)
T ss_pred ------------------------CCCCCchhhhhHHHHHHHHHHHHHHh-CC-CCEEEEEecCCccchHHhhhhhcccc
Confidence 44677899999999999999999998 55 4999999999999986532110
Q ss_pred --hh--hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 --PL--FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 --~~--~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+. ...........+..++.+|+|+|+.++||+++....++|+.+..|+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg~~ 245 (258)
T PRK06398 191 KDPEHVERKIREWGEMHPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGGLR 245 (258)
T ss_pred CChhhhHHHHHhhhhcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCccc
Confidence 00 0000111112344567899999999999999888889999999999753
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=265.76 Aligned_cols=224 Identities=18% Similarity=0.258 Sum_probs=196.7
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
-.++.+|+++|||||++|||+++|.+||++|+ ++++.+.+.+..++..+++.+.+ +++.+.||+++.+++.+.+++++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g-~~~~y~cdis~~eei~~~a~~Vk 109 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG-EAKAYTCDISDREEIYRLAKKVK 109 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC-ceeEEEecCCCHHHHHHHHHHHH
Confidence 44689999999999999999999999999997 99999999988888888887664 89999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++.|.+|+||||||++... .+.+.+++++++++++|+.|+++.+++++|.|.++. .|.||.|+|++|..
T Consensus 110 ~e~G~V~ILVNNAGI~~~~-~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~--~GHIV~IaS~aG~~-------- 178 (300)
T KOG1201|consen 110 KEVGDVDILVNNAGIVTGK-KLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN--NGHIVTIASVAGLF-------- 178 (300)
T ss_pred HhcCCceEEEeccccccCC-CccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC--CceEEEehhhhccc--------
Confidence 9999999999999999664 566799999999999999999999999999999876 49999999999985
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc--ccCCcEEEEecCCcccCCcccccc
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~--~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|++||+|+.+|.++|..|+. ...||+...|+|+.++|.|... .
T Consensus 179 ---------------------------g~~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~-~ 230 (300)
T KOG1201|consen 179 ---------------------------GPAGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG-A 230 (300)
T ss_pred ---------------------------CCccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC-C
Confidence 567889999999999999999999985 3568999999999999987654 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.+ +.. ..+.++|+++|+.|+..+....
T Consensus 231 ~~-~~~---------l~P~L~p~~va~~Iv~ai~~n~ 257 (300)
T KOG1201|consen 231 TP-FPT---------LAPLLEPEYVAKRIVEAILTNQ 257 (300)
T ss_pred CC-Ccc---------ccCCCCHHHHHHHHHHHHHcCC
Confidence 11 111 1245799999999999876543
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=267.40 Aligned_cols=241 Identities=20% Similarity=0.187 Sum_probs=194.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS- 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~- 120 (358)
+++|++|||||++|||+++++.|++.|+ +|++.. |+.+..+....++...+.++..+.+|+++.+++..+++++.+.
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 80 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999995 887764 6666666666666555667888999999999999999887652
Q ss_pred ---CC--CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 121 ---GR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 121 ---~~--~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++ ++|+||||||... ...+.+.+.+.|++++++|+.+++.++++++|.|.+. |+||++||..+..
T Consensus 81 ~~~~g~~~id~lv~~Ag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~----g~iv~isS~~~~~----- 150 (252)
T PRK12747 81 QNRTGSTKFDILINNAGIGP-GAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISSAATRI----- 150 (252)
T ss_pred hhhcCCCCCCEEEECCCcCC-CCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcC----CeEEEECCccccc-----
Confidence 33 8999999999753 3456678899999999999999999999999999763 7999999998763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||+++.+++++++.++ .+.||+||+|+||+|.|++...-
T Consensus 151 ------------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~girvn~v~Pg~v~t~~~~~~ 199 (252)
T PRK12747 151 ------------------------------SLPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFIKTDMNAEL 199 (252)
T ss_pred ------------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHcCCEEEEEecCCccCchhhhc
Confidence 44567789999999999999999999 78899999999999999864321
Q ss_pred chhhhhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ........ ..+.+++.+|+|+++.++||+++....++|+.+..||..
T Consensus 200 ~~~--~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~vdgg~ 250 (252)
T PRK12747 200 LSD--PMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 250 (252)
T ss_pred ccC--HHHHHHHHhcCcccCCCCHHHHHHHHHHHcCccccCcCCcEEEecCCc
Confidence 110 00011111 113456789999999999999988778999999999853
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=266.85 Aligned_cols=244 Identities=19% Similarity=0.146 Sum_probs=203.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||+++++.|+++|+ +|++++|+.+..+....++...+.++.++++|+++.+++.++++++.+.++++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDL 80 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999995 99999999877777777766556678899999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... ..+.+.+.+.|++.+++|+.+++.+++.+++.+.+... +++||++||..+..
T Consensus 81 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~-------------- 144 (256)
T PRK08643 81 NVVVNNAGVAPT-TPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGH-GGKIINATSQAGVV-------------- 144 (256)
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECcccccc--------------
Confidence 999999998643 35667789999999999999999999999999876532 37999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh----
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF---- 280 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~---- 280 (358)
+.++...|+.+|++++.|++.++.++ .+.||+|++|+||+++|+++........
T Consensus 145 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~~ 202 (256)
T PRK08643 145 ---------------------GNPELAVYSSTKFAVRGLTQTAARDL-ASEGITVNAYAPGIVKTPMMFDIAHQVGENAG 202 (256)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcChhhhHHHhhhccccC
Confidence 34567789999999999999999999 7789999999999999986543111000
Q ss_pred --hh--hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 --RL--LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 --~~--~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ........+.+++.+|++++..+.||+++....++|+.+..|++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~L~~~~~~~~~G~~i~vdgg~ 253 (256)
T PRK08643 203 KPDEWGMEQFAKDITLGRLSEPEDVANCVSFLAGPDSDYITGQTIIVDGGM 253 (256)
T ss_pred CCchHHHHHHhccCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCCe
Confidence 00 011122334556789999999999999998888999999999864
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=265.75 Aligned_cols=243 Identities=19% Similarity=0.228 Sum_probs=198.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.. +...+.+...+.++.++.+|+++.+++.++++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEF 78 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 9999999752 33333343345678999999999999999999999888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++++++.|.++.. .++||++||..+..
T Consensus 79 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~----------- 145 (248)
T TIGR01832 79 GHIDILVNNAGIIRR-ADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGR-GGKIINIASMLSFQ----------- 145 (248)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEecHHhcc-----------
Confidence 899999999998754 34557788999999999999999999999999976531 37999999987763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+....|+.||+++..+++.+++++ .+.||+||+|+||++.|++....... ..
T Consensus 146 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~~ 199 (248)
T TIGR01832 146 ------------------------GGIRVPSYTASKHGVAGLTKLLANEW-AAKGINVNAIAPGYMATNNTQALRAD-ED 199 (248)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-CccCcEEEEEEECcCcCcchhccccC-hH
Confidence 33456689999999999999999999 77899999999999999865321110 01
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+.+++.+|+|+|+++++|+++.....+|+++..|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~~i~~dgg 244 (248)
T TIGR01832 200 RNAAILERIPAGRWGTPDDIGGPAVFLASSASDYVNGYTLAVDGG 244 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCcEEEeCCC
Confidence 111122234456789999999999999998888899999999985
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=266.46 Aligned_cols=245 Identities=21% Similarity=0.220 Sum_probs=205.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+++||++++++|+++| ++|++++|+..+.+...+.+...+.++.++++|+++.++++++++++.+.+
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAG-AEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999 599999999887777777776556678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... .++.+.+.+.|++++++|+.+++.+++++.+.|.+++ .++||++||..+..
T Consensus 86 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~----------- 151 (255)
T PRK07523 86 GPIDILVNNAGMQFR-TPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARG--AGKIINIASVQSAL----------- 151 (255)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEEccchhcc-----------
Confidence 999999999998754 4566788999999999999999999999999998764 37999999987653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|++++.+++.++.++ .+.||+|++|+||+++|++...... ...
T Consensus 152 ------------------------~~~~~~~y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~~~-~~~ 205 (255)
T PRK07523 152 ------------------------ARPGIAPYTATKGAVGNLTKGMATDW-AKHGLQCNAIAPGYFDTPLNAALVA-DPE 205 (255)
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcccCchhhhhcc-CHH
Confidence 44567889999999999999999999 7789999999999999985432111 001
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++..|+|+|.++++|+++.+..++|+.+..|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 251 (255)
T PRK07523 206 FSAWLEKRTPAGRWGKVEELVGACVFLASDASSFVNGHVLYVDGGI 251 (255)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCe
Confidence 1111112334456789999999999999988888999999998864
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=265.75 Aligned_cols=243 Identities=16% Similarity=0.170 Sum_probs=195.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.. .+...+++...+.++.++.+|+++.+++.++++++.+.+
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAF 82 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 9999999853 344455555455678899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||......++.+.+.++|++.+++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 83 ~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~----------- 149 (260)
T PRK12823 83 GRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQG--GGAIVNVSSIATRG----------- 149 (260)
T ss_pred CCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEcCccccC-----------
Confidence 99999999999753334566788999999999999999999999999998764 37999999987541
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc--c---
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--H--- 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~--~--- 276 (358)
.....|+.||++++.|++.++.++ .+.||+|++|+||++.|++.... .
T Consensus 150 --------------------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 202 (260)
T PRK12823 150 --------------------------INRVPYSAAKGGVNALTASLAFEY-AEHGIRVNAVAPGGTEAPPRRVPRNAAPQ 202 (260)
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccCCcchhhHHhhccc
Confidence 123469999999999999999999 77899999999999999842110 0
Q ss_pred hh-----hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 277 IP-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. ............+.+++..|+|++++++||+++.+..++|+.+..|++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 257 (260)
T PRK12823 203 SEQEKAWYQQIVDQTLDSSLMKRYGTIDEQVAAILFLASDEASYITGTVLPVGGG 257 (260)
T ss_pred cccccccHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCcccccccCcEEeecCC
Confidence 00 000011111223445677999999999999998877899999998875
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=266.76 Aligned_cols=247 Identities=19% Similarity=0.186 Sum_probs=206.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.++++...+.+...+.++.++++|+++.++++++++++.+.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 368899999999999999999999999995 8999999988887777777665668999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.|++++++|+.+++.+++.++|+|.+++ .++||++||..+..
T Consensus 85 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 151 (265)
T PRK07097 85 VGVIDILVNNAGIIKR-IPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKG--HGKIINICSMMSEL---------- 151 (265)
T ss_pred CCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCccccC----------
Confidence 9999999999998754 3566788999999999999999999999999998764 48999999987763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-- 278 (358)
+.+++..|+.+|+++..+++++++++ .+.||+|++|+||++.|++.......
T Consensus 152 -------------------------~~~~~~~Y~~sKaal~~l~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (265)
T PRK07097 152 -------------------------GRETVSAYAAAKGGLKMLTKNIASEY-GEANIQCNGIGPGYIATPQTAPLRELQA 205 (265)
T ss_pred -------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCceEEEEEeccccccchhhhhhccc
Confidence 34567889999999999999999999 77899999999999999865331110
Q ss_pred ---hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 ---LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ---~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+..++.+|+|+|..+++++++....++|+.+..|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 257 (265)
T PRK07097 206 DGSRHPFDQFIIAKTPAARWGDPEDLAGPAVFLASDASNFVNGHILYVDGGI 257 (265)
T ss_pred cccchhHHHHHHhcCCccCCcCHHHHHHHHHHHhCcccCCCCCCEEEECCCc
Confidence 0000001112223456789999999999999988778999999999864
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=265.07 Aligned_cols=244 Identities=19% Similarity=0.143 Sum_probs=202.5
Q ss_pred ccCCCCeEEEEcCCC-chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CC-CceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASS-GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AK-ENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~-gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~-~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
..+++|++|||||+| |||+++++.|+++|+ +|++++|+...++...+.+.. .+ .++.++++|+++.++++++++++
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 91 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAA 91 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 357799999999995 999999999999995 899999998777777666644 22 46889999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||+|.... ..+.+.+.++|++.+++|+.+++.++++++|.|+.... .++||+++|..+..
T Consensus 92 ~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~ss~~~~~------- 162 (262)
T PRK07831 92 VERLGRLDVLVNNAGLGGQ-TPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGH-GGVIVNNASVLGWR------- 162 (262)
T ss_pred HHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcC-------
Confidence 9888999999999998643 45667889999999999999999999999999987541 37999999987763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+++..|+.+|+|++++++.++.|+ .+.||+||+|+||+++|++......
T Consensus 163 ----------------------------~~~~~~~Y~~sKaal~~~~~~la~e~-~~~gI~v~~i~Pg~~~t~~~~~~~~ 213 (262)
T PRK07831 163 ----------------------------AQHGQAHYAAAKAGVMALTRCSALEA-AEYGVRINAVAPSIAMHPFLAKVTS 213 (262)
T ss_pred ----------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccCcccccccC
Confidence 34567789999999999999999999 7889999999999999986543211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. ..........+..++.+|+|+++.++||+++.+.+++|+.+..|+
T Consensus 214 ~--~~~~~~~~~~~~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 214 A--ELLDELAAREAFGRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred H--HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 1 111111223344667899999999999999988889999999887
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=265.29 Aligned_cols=248 Identities=19% Similarity=0.170 Sum_probs=203.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||+++++.|+++|+ .|+++.|+ .+..+.....+...+.++.++.+|+++.+++.++++++.+
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~ 81 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVK 81 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999999995 88887775 4445555556655566788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.+++.++++|.+... .++||++||..+..
T Consensus 82 ~~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~-~g~iv~~sS~~~~~--------- 150 (261)
T PRK08936 82 EFGTLDVMINNAGIENA-VPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDI-KGNIINMSSVHEQI--------- 150 (261)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEccccccC---------
Confidence 99999999999998654 35667788999999999999999999999999987532 37999999987653
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+++..|+.+|+|+..+++.++.++ .+.||+|++|+||+++|++.......
T Consensus 151 --------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~- 202 (261)
T PRK08936 151 --------------------------PWPLFVHYAASKGGVKLMTETLAMEY-APKGIRVNNIGPGAINTPINAEKFAD- 202 (261)
T ss_pred --------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECcCCCCccccccCC-
Confidence 45677899999999999999999999 77899999999999999864432211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
...........+..++.+|+++++.+.||+++....++|+++..|+...
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g~~ 251 (261)
T PRK08936 203 PKQRADVESMIPMGYIGKPEEIAAVAAWLASSEASYVTGITLFADGGMT 251 (261)
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCCcc
Confidence 0111111123344668899999999999999988889999999998753
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=265.25 Aligned_cols=242 Identities=18% Similarity=0.184 Sum_probs=194.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|+++||||++|||+++++.|+++|+ .|++++++.. ..+.. .. .++.++.+|+++.++++++++++.+.
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l----~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 76 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKEL----RE--KGVFTIKCDVGNRDQVKKSKEVVEKE 76 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHH----Hh--CCCeEEEecCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 8877766543 22222 11 14788999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... .++.+.+.+.|++.+++|+.+++.+++.++|.|.++. .++||++||..+..
T Consensus 77 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~---------- 143 (255)
T PRK06463 77 FGRVDVLVNNAGIMYL-MPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK--NGAIVNIASNAGIG---------- 143 (255)
T ss_pred cCCCCEEEECCCcCCC-CChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHhCC----------
Confidence 9999999999998643 3556778999999999999999999999999998654 48999999987652
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.+.++...|+.||+|+.+|+++++.|+ .+.||+||+|+||+++|++......+..
T Consensus 144 ------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~ 198 (255)
T PRK06463 144 ------------------------TAAEGTTFYAITKAGIIILTRRLAFEL-GKYGIRVNAVAPGWVETDMTLSGKSQEE 198 (255)
T ss_pred ------------------------CCCCCccHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCCCchhhcccCccc
Confidence 122456789999999999999999999 7789999999999999986533211100
Q ss_pred -hhhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 281 -RLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 281 -~~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.... ......+.+++.+|+++++.+++|+++....++|+.+..|++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~~ 248 (255)
T PRK06463 199 AEKLRELFRNKTVLKTTGKPEDIANIVLFLASDDARYITGQVIVADGGRI 248 (255)
T ss_pred hHHHHHHHHhCCCcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCee
Confidence 0111 11122344567899999999999999888889999999998753
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=266.99 Aligned_cols=247 Identities=17% Similarity=0.153 Sum_probs=199.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+....+...+.+.. +.++.++++|+++.++++++++.+.+.
T Consensus 14 ~~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 14 QRLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999995 999999987776666666532 457899999999999999999999999
Q ss_pred CCCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... ...+.+.+.++|++++++|+.+++.+++++++.|.+.. .|+||+++|..+..
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~--------- 160 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLK--KGSIVSLCSVASAI--------- 160 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CceEEEecChhhcc---------
Confidence 9999999999998643 23456788999999999999999999999999997654 37999999988764
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.+++.+++|+ .++||+|++|+||++.|++........
T Consensus 161 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~ 213 (280)
T PLN02253 161 --------------------------GGLGPHAYTGSKHAVLGLTRSVAAEL-GKHGIRVNCVSPYAVPTALALAHLPED 213 (280)
T ss_pred --------------------------cCCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccccccccccc
Confidence 33455689999999999999999999 778999999999999998543221110
Q ss_pred ---hhhhc---chhH-Hh-hhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ---FRLLF---PPFQ-KY-ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ---~~~~~---~~~~-~~-~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...+. .... .. ......+|+|+++++++|+++....++|+.+..||..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG~ 269 (280)
T PLN02253 214 ERTEDALAGFRAFAGKNANLKGVELTVDDVANAVLFLASDEARYISGLNLMIDGGF 269 (280)
T ss_pred cchhhhhhhhHHHhhcCCCCcCCCCCHHHHHHHHHhhcCcccccccCcEEEECCch
Confidence 00000 0000 01 1123578999999999999988888999999999864
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=267.61 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=192.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||++|||++++++|+++|+ +|++++|+.+.++...+. .+.++.++++|+++.+++.++++++.+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAA---HGDAVVGVEGDVRSLDDHKEAVARCVAAF 77 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhh---cCCceEEEEeccCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 999999987666655432 24568899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCH----HhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTA----EGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~----~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+++|+||||||.......+.+.+. +.|++.+++|+.+++.++++++|.|.+++ ++||+++|..+..
T Consensus 78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~~sS~~~~~------- 147 (262)
T TIGR03325 78 GKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR---GSVIFTISNAGFY------- 147 (262)
T ss_pred CCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC---CCEEEEeccceec-------
Confidence 999999999997532222223332 57999999999999999999999997653 7899999987763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++.|++.+++++ .+. |+||+|+||+++|++......
T Consensus 148 ----------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~-irvn~i~PG~i~t~~~~~~~~ 197 (262)
T TIGR03325 148 ----------------------------PNGGGPLYTAAKHAVVGLVKELAFEL-APY-VRVNGVAPGGMSSDLRGPKSL 197 (262)
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHhh-ccC-eEEEEEecCCCcCCCcccccc
Confidence 33556789999999999999999999 665 999999999999986532110
Q ss_pred hhhhh------hcchh-HHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCCC
Q 018331 278 PLFRL------LFPPF-QKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~------~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~~ 327 (358)
..... ..... ...+.+++.+|+|+++.++||+++. ...++|+.+..||..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~eva~~~~~l~s~~~~~~~tG~~i~vdgg~ 255 (262)
T TIGR03325 198 GMADKSISTVPLGDMLKSVLPIGRMPDAEEYTGAYVFFATRGDTVPATGAVLNYDGGM 255 (262)
T ss_pred ccccccccccchhhhhhhcCCCCCCCChHHhhhheeeeecCCCcccccceEEEecCCe
Confidence 00000 01111 2345677889999999999999975 446899999999864
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=262.74 Aligned_cols=243 Identities=18% Similarity=0.184 Sum_probs=203.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||++|||+++++.|+++|+ .|++++|+....+....++...+.++.++.+|+++.+++.++++.+.+.+
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 89999999877777766665556678899999999999999999999989
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||..... .+ +.+.+.|++.+++|+.+++.++++++|+|.+.+ .++||++||..+..
T Consensus 87 ~~~d~li~~ag~~~~~-~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 151 (255)
T PRK06113 87 GKVDILVNNAGGGGPK-PF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN----------- 151 (255)
T ss_pred CCCCEEEECCCCCCCC-CC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CcEEEEEecccccC-----------
Confidence 9999999999986432 33 578899999999999999999999999997654 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|+|+++|++.+++++ .+.||+||+|+||+++|++......+...
T Consensus 152 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~ 206 (255)
T PRK06113 152 ------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIE 206 (255)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecccccccccccccCHHHH
Confidence 44567789999999999999999998 77899999999999999865432212111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+..++.+|+|+++++++|+++....++|+.+..||+.
T Consensus 207 --~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~i~~~gg~ 250 (255)
T PRK06113 207 --QKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_pred --HHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 11122233456789999999999999988888999999999864
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=264.13 Aligned_cols=247 Identities=20% Similarity=0.209 Sum_probs=205.4
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+++++|+++||||++|||++++++|+++|+ +|++++|+.+.++...+++... +.++.++.+|+++.+++.++++++
T Consensus 4 ~~~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 4 RWRLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4578999999999999999999999999995 9999999988777776666543 567899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||+|.... ....+.+.++|++.+.+|+.+++.++++++|+|.++. .++||++||..+..
T Consensus 83 ~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~------- 152 (257)
T PRK09242 83 EDHWDGLHILVNNAGGNIR-KAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHA--SSAIVNIGSVSGLT------- 152 (257)
T ss_pred HHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CceEEEECccccCC-------
Confidence 9999999999999998543 3455778999999999999999999999999998764 37999999988763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||+++|++.....
T Consensus 153 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~i~t~~~~~~~- 202 (257)
T PRK09242 153 ----------------------------HVRSGAPYGMTKAALLQMTRNLAVEW-AEDGIRVNAVAPWYIRTPLTSGPL- 202 (257)
T ss_pred ----------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEECCCCCccccccc-
Confidence 44567789999999999999999999 778999999999999998653221
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+..++.+|++++.++.+|+++....++|+.+..|+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg~ 252 (257)
T PRK09242 203 SDPDYYEQVIERTPMRRVGEPEEVAAAVAFLCMPAASYITGQCIAVDGGF 252 (257)
T ss_pred CChHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCe
Confidence 11111111222334455779999999999999887777899999998864
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=291.11 Aligned_cols=242 Identities=20% Similarity=0.198 Sum_probs=201.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
...+|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.+..++.+|+++.+++.++++++.+.+
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 341 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEAL---GDEHLSVQADITDEAAVESAFAQIQARW 341 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999995 9999999987777766554 3467789999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.+.|++++++|+.+++.++++++|+|.+ .|+||++||..+..
T Consensus 342 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~g~iv~isS~~~~~----------- 406 (520)
T PRK06484 342 GRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQ----GGVIVNLGSIASLL----------- 406 (520)
T ss_pred CCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc----CCEEEEECchhhcC-----------
Confidence 999999999998643345667899999999999999999999999999932 37999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.||+++++|++.++.++ .+.||+||+|+||+|+|++..........
T Consensus 407 ------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~ 461 (520)
T PRK06484 407 ------------------------ALPPRNAYCASKAAVTMLSRSLACEW-APAGIRVNTVAPGYIETPAVLALKASGRA 461 (520)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCchhhhhccccHH
Confidence 45677899999999999999999999 77899999999999999865321100000
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+|+.++||+++....++|+.+..|+..
T Consensus 462 ~~~~~~~~~~~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 462 DFDSIRRRIPLGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGGW 507 (520)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 1111122334456789999999999999988888999999999874
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=268.72 Aligned_cols=232 Identities=23% Similarity=0.254 Sum_probs=195.1
Q ss_pred cCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-CCccEEE
Q 018331 52 GAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-RPLDVLV 128 (358)
Q Consensus 52 Gas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~-~~iD~lv 128 (358)
|++ +|||+++|++|+++|+ +|++++|+.++++...+++..... ..++++|+++.++++++++++.+.+ +++|+||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga-~V~~~~~~~~~~~~~~~~l~~~~~-~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV 78 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGA-NVILTDRNEEKLADALEELAKEYG-AEVIQCDLSDEESVEALFDEAVERFGGRIDILV 78 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTE-EEEEEESSHHHHHHHHHHHHHHTT-SEEEESCTTSHHHHHHHHHHHHHHHCSSESEEE
T ss_pred CCCCCCChHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHHHcC-CceEeecCcchHHHHHHHHHHHhhcCCCeEEEE
Confidence 566 9999999999999995 999999998876544444433212 2269999999999999999999998 9999999
Q ss_pred EcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 129 CNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 129 ~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
||+|.... ..++.+.+.+.|+..+++|+.+++.++++++|+|.++ |+||++||..+..
T Consensus 79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----gsii~iss~~~~~--------------- 139 (241)
T PF13561_consen 79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG----GSIINISSIAAQR--------------- 139 (241)
T ss_dssp EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE----EEEEEEEEGGGTS---------------
T ss_pred ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CCcccccchhhcc---------------
Confidence 99998754 3466678889999999999999999999999988875 7999999998763
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc-CCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.+++..|+.+|+|++.|++++|.|+ ++ .||+||+|+||+++|++.. ..........
T Consensus 140 --------------------~~~~~~~y~~sKaal~~l~r~lA~el-~~~~gIrVN~V~pG~i~t~~~~-~~~~~~~~~~ 197 (241)
T PF13561_consen 140 --------------------PMPGYSAYSASKAALEGLTRSLAKEL-APKKGIRVNAVSPGPIETPMTE-RIPGNEEFLE 197 (241)
T ss_dssp --------------------BSTTTHHHHHHHHHHHHHHHHHHHHH-GGHGTEEEEEEEESSBSSHHHH-HHHTHHHHHH
T ss_pred --------------------cCccchhhHHHHHHHHHHHHHHHHHh-ccccCeeeeeecccceeccchh-ccccccchhh
Confidence 45677799999999999999999999 77 8999999999999998532 2212223333
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
......|.+++.+|+|+|.+++||+++.+.++||+.|..||+
T Consensus 198 ~~~~~~pl~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 198 ELKKRIPLGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp HHHHHSTTSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred hhhhhhccCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 444567778889999999999999999988999999999986
|
... |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=261.68 Aligned_cols=247 Identities=21% Similarity=0.216 Sum_probs=207.3
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.++++|+++||||+++||++++++|+++|+ .|++++|+.+.++...++++..+.++.++.+|+++.+++.++++++..
T Consensus 6 ~~~~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 84 (256)
T PRK06124 6 RFSLAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDA 84 (256)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999995 999999998777777777766667789999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||+|.... ..+.+.+.++|++.+++|+.+++.+.+.+++.|.++. .++||++||..+..
T Consensus 85 ~~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~--------- 152 (256)
T PRK06124 85 EHGRLDILVNNVGARDR-RPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQG--YGRIIAITSIAGQV--------- 152 (256)
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEeechhcc---------
Confidence 99999999999998654 4566788999999999999999999999999997665 37999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||+++|++......+
T Consensus 153 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~- 204 (256)
T PRK06124 153 --------------------------ARAGDAVYPAAKQGLTGLMRALAAEF-GPHGITSNAIAPGYFATETNAAMAAD- 204 (256)
T ss_pred --------------------------CCCCccHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEECCccCcchhhhccC-
Confidence 44667899999999999999999998 67799999999999999853321111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|++++.++++|++++...++|+++..|+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (256)
T PRK06124 205 PAVGPWLAQRTPLGRWGRPEEIAGAAVFLASPAASYVNGHVLAVDGGY 252 (256)
T ss_pred hHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCcCCCEEEECCCc
Confidence 011111112234456789999999999999998888999999999864
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=263.70 Aligned_cols=243 Identities=21% Similarity=0.187 Sum_probs=198.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||++|||+++++.|+++|+ +|++++|+...++...+++... +.++.++.+|+++.+++.+++++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--- 78 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE--- 78 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH---
Confidence 357899999999999999999999999996 9999999988777766666543 45788999999999999888764
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|++|||+|.... ..+.+.+.++|++++++|+.+++.++++++|.|.++. .++||++||..+..
T Consensus 79 -~g~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~iss~~~~~--------- 145 (259)
T PRK06125 79 -AGDIDILVNNAGAIPG-GGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG--SGVIVNVIGAAGEN--------- 145 (259)
T ss_pred -hCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEecCccccC---------
Confidence 4789999999998643 4667889999999999999999999999999998764 37999999987753
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
+.+++..|+.+|+|+..|+++++.|+ .+.||+||+|+||+++|+++......
T Consensus 146 --------------------------~~~~~~~y~ask~al~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~ 198 (259)
T PRK06125 146 --------------------------PDADYICGSAGNAALMAFTRALGGKS-LDDGVRVVGVNPGPVATDRMLTLLKGR 198 (259)
T ss_pred --------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccHHHHHHHHhh
Confidence 34567789999999999999999998 78899999999999999854321100
Q ss_pred ----h--hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 ----L--FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ----~--~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+ ...........+.+++.+|+|+++.++||+++.+..++|+.+..||..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~vdgg~ 253 (259)
T PRK06125 199 ARAELGDESRWQELLAGLPLGRPATPEEVADLVAFLASPRSGYTSGTVVTVDGGI 253 (259)
T ss_pred hhcccCCHHHHHHHhccCCcCCCcCHHHHHHHHHHHcCchhccccCceEEecCCe
Confidence 0 000111112334456789999999999999988888999999999863
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=265.77 Aligned_cols=248 Identities=22% Similarity=0.206 Sum_probs=203.0
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
+....++++|++|||||++|||++++++|+++|+ .|++++|+. ...+.....+...+.++.++.+|+++.+++.++++
T Consensus 38 ~~~~~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 38 YKGSGKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence 3444689999999999999999999999999995 899998875 33444555555455678999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++.+.++++|+||||||.......+.+.+.++|++.+++|+.+++.+++++++.|.+. ++||++||..+..
T Consensus 117 ~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~----g~iV~isS~~~~~----- 187 (290)
T PRK06701 117 ETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQG----SAIINTGSITGYE----- 187 (290)
T ss_pred HHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhC----CeEEEEecccccC-----
Confidence 9999889999999999986444456678899999999999999999999999998642 6999999988763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.+++..|+.||+|+..++++++.++ .+.||+|++|+||+++|+.....
T Consensus 188 ------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~gIrv~~i~pG~v~T~~~~~~ 236 (290)
T PRK06701 188 ------------------------------GNETLIDYSATKGAIHAFTRSLAQSL-VQKGIRVNAVAPGPIWTPLIPSD 236 (290)
T ss_pred ------------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCCCCcccccc
Confidence 33556789999999999999999998 77899999999999999865432
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ..........+..++.+|+|+|+++++|+++....++|..+..|+..
T Consensus 237 ~~~--~~~~~~~~~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~~i~idgg~ 286 (290)
T PRK06701 237 FDE--EKVSQFGSNTPMQRPGQPEELAPAYVFLASPDSSYITGQMLHVNGGV 286 (290)
T ss_pred cCH--HHHHHHHhcCCcCCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCCc
Confidence 211 11111112234456789999999999999998878999999999853
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=260.87 Aligned_cols=241 Identities=22% Similarity=0.177 Sum_probs=200.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|++|||||++|||++++++|+++|+ +|+++. |+...++...+++...+.++.++++|+++.++++++++++.+.+++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 67999999999999999999999995 887765 4555666666666666778999999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||+|.... ..+.+.+.++|++.+++|+.+++.+++++.++|.+++. +++||++||..+..
T Consensus 81 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~------------- 145 (256)
T PRK12743 81 IDVLVNNAGAMTK-APFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQ-GGRIINITSVHEHT------------- 145 (256)
T ss_pred CCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEEeeccccC-------------
Confidence 9999999998754 35567789999999999999999999999999976532 37999999987653
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.++...|+.+|+++..++++++.++ .+.||++++|+||+++|++..... . ...
T Consensus 146 ----------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~Pg~~~t~~~~~~~-~--~~~ 199 (256)
T PRK12743 146 ----------------------PLPGASAYTAAKHALGGLTKAMALEL-VEHGILVNAVAPGAIATPMNGMDD-S--DVK 199 (256)
T ss_pred ----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCccccccC-h--HHH
Confidence 44667899999999999999999999 778999999999999998543211 1 111
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+..++.+|+|+++.+++++++....++|+++..||..
T Consensus 200 ~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~dgg~ 243 (256)
T PRK12743 200 PDSRPGIPLGRPGDTHEIASLVAWLCSEGASYTTGQSLIVDGGF 243 (256)
T ss_pred HHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 11222334456789999999999999988878999999999974
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=257.06 Aligned_cols=222 Identities=16% Similarity=0.162 Sum_probs=187.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||++|||++++++|+++|+ +|++++|+.++++...+.+...+.++..+.+|+++.++++++++++.+.+
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQF 80 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999988888877776656678889999999999999999999998
Q ss_pred C-CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 R-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~-~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+ ++|++|||||.......+.+.+.++|.+.+++|+.+++.+++.++|+|.+++. +|+||++||..+.
T Consensus 81 g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~----------- 148 (227)
T PRK08862 81 NRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNK-KGVIVNVISHDDH----------- 148 (227)
T ss_pred CCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CceEEEEecCCCC-----------
Confidence 8 99999999987655456778889999999999999999999999999986532 4899999996543
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+++..|+.||+|+.+|+++++.|+ .+.||+||+|+||+++|+... .+.
T Consensus 149 ---------------------------~~~~~Y~asKaal~~~~~~la~el-~~~~Irvn~v~PG~i~t~~~~---~~~- 196 (227)
T PRK08862 149 ---------------------------QDLTGVESSNALVSGFTHSWAKEL-TPFNIRVGGVVPSIFSANGEL---DAV- 196 (227)
T ss_pred ---------------------------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcCcCCCcc---CHH-
Confidence 346689999999999999999999 788999999999999997221 110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
. +.. -.++++.+..||++ ..++||+-+.
T Consensus 197 -~----~~~-------~~~~~~~~~~~l~~--~~~~tg~~~~ 224 (227)
T PRK08862 197 -H----WAE-------IQDELIRNTEYIVA--NEYFSGRVVE 224 (227)
T ss_pred -H----HHH-------HHHHHHhheeEEEe--cccccceEEe
Confidence 0 000 01899999999997 3478887664
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=267.17 Aligned_cols=238 Identities=17% Similarity=0.201 Sum_probs=196.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||+++++.|+++|+ +|++++|+.+.++...+++.. +.++..+++|+++.++++++++++.+.
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGG-DDRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcC-CCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999995 999999998888877777653 456777889999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++++++|+.+++.+++.++|.|.++. |+||++||..+..
T Consensus 83 ~g~id~vI~nAG~~~~-~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~---------- 148 (296)
T PRK05872 83 FGGIDVVVANAGIASG-GSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERR---GYVLQVSSLAAFA---------- 148 (296)
T ss_pred cCCCCEEEECCCcCCC-cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEEeCHhhcC----------
Confidence 9999999999998754 4667889999999999999999999999999998753 7999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||++++.|++.++.++ .+.||+|++|+||+++|++....... .
T Consensus 149 -------------------------~~~~~~~Y~asKaal~~~~~~l~~e~-~~~gi~v~~v~Pg~v~T~~~~~~~~~-~ 201 (296)
T PRK05872 149 -------------------------AAPGMAAYCASKAGVEAFANALRLEV-AHHGVTVGSAYLSWIDTDLVRDADAD-L 201 (296)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HHHCcEEEEEecCcccchhhhhcccc-c
Confidence 45678899999999999999999999 77899999999999999865432111 0
Q ss_pred hhhcchhHH--hhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 281 RLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 281 ~~~~~~~~~--~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
......... .+..+..+|+++++.+++++++....++|..+
T Consensus 202 ~~~~~~~~~~~~p~~~~~~~~~va~~i~~~~~~~~~~i~~~~~ 244 (296)
T PRK05872 202 PAFRELRARLPWPLRRTTSVEKCAAAFVDGIERRARRVYAPRW 244 (296)
T ss_pred hhHHHHHhhCCCcccCCCCHHHHHHHHHHHHhcCCCEEEchHH
Confidence 111111111 13346789999999999999887665555433
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=260.77 Aligned_cols=246 Identities=21% Similarity=0.214 Sum_probs=200.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||.+++++|+++|+ .|++++|+.+.++...+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 8999999987776666566554557789999999999999999999988
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.+.+++ ++||++||..+..
T Consensus 84 ~~~iD~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~---g~iv~iss~~~~~---------- 149 (264)
T PRK07576 84 FGPIDVLVSGAAGNFP-APAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPG---ASIIQISAPQAFV---------- 149 (264)
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CEEEEECChhhcc----------
Confidence 8999999999987643 3556778899999999999999999999999987653 7999999987753
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.+|++++.|++.++.++ ...||++++|+||+++++.......+..
T Consensus 150 -------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~~v~pg~~~~t~~~~~~~~~~ 203 (264)
T PRK07576 150 -------------------------PMPMQAHVCAAKAGVDMLTRTLALEW-GPEGIRVNSIVPGPIAGTEGMARLAPSP 203 (264)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccccCcHHHhhcccCH
Confidence 44677899999999999999999998 7789999999999997432211111100
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+|+++.++++++++...++|+++..|+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~~~gg~ 250 (264)
T PRK07576 204 ELQAAVAQSVPLKRNGTKQDIANAALFLASDMASYITGVVLPVDGGW 250 (264)
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCccCCEEEECCCc
Confidence 00001111233456789999999999999987777999999999864
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=259.96 Aligned_cols=246 Identities=19% Similarity=0.177 Sum_probs=203.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||++|||++++++|+++|+ +|++++|+...++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 2 LLKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999887777777776556778999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.++|++.+++|+.+++.+++++.+.|.++. ++||++||..+..
T Consensus 81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~ii~~sS~~~~~----------- 146 (258)
T PRK07890 81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG---GSIVMINSMVLRH----------- 146 (258)
T ss_pred CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC---CEEEEEechhhcc-----------
Confidence 99999999999865444566788999999999999999999999999997753 6999999987653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 277 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---- 277 (358)
+.+++..|+.+|+++..+++.++.++ .+.||++++|+||.+.|++......
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~~ 201 (258)
T PRK07890 147 ------------------------SQPKYGAYKMAKGALLAASQSLATEL-GPQGIRVNSVAPGYIWGDPLKGYFRHQAG 201 (258)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeCCccCcHHHHHHhhhccc
Confidence 45677899999999999999999998 7789999999999999986432110
Q ss_pred ----hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 ----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ----~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+............+..++.+|+|+++++++++++....++|+.+..|+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~G~~i~~~gg~ 255 (258)
T PRK07890 202 KYGVTVEQIYAETAANSDLKRLPTDDEVASAVLFLASDLARAITGQTLDVNCGE 255 (258)
T ss_pred ccCCCHHHHHHHHhhcCCccccCCHHHHHHHHHHHcCHhhhCccCcEEEeCCcc
Confidence 00000111111223445779999999999999987767999999888753
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.78 Aligned_cols=245 Identities=18% Similarity=0.147 Sum_probs=201.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.+++|++|||||++|||+++++.|+++| ++|++++|+....+...+.+. .++.++++|+++.+++.++++++.+.
T Consensus 2 ~~l~~~~vlItGas~~iG~~ia~~l~~~G-~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (257)
T PRK07067 2 MRLQGKVALLTGAASGIGEAVAERYLAEG-ARVVIADIKPARARLAALEIG---PAAIAVSLDVTRQDSIDRIVAAAVER 77 (257)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHcC-CEEEEEcCCHHHHHHHHHHhC---CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 599999999877776655543 46889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|+..+++|+.+++.+++++++.|.++.. +++||++||..+..
T Consensus 78 ~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 145 (257)
T PRK07067 78 FGGIDILFNNAALFDM-APILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGR-GGKIINMASQAGRR---------- 145 (257)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCC-CcEEEEeCCHHhCC----------
Confidence 9999999999998744 35567788999999999999999999999999977532 47999999987663
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+++..+++.+++++ .+.||++++|+||+++|++.........
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 199 (257)
T PRK07067 146 -------------------------GEALVSHYCATKAAVISYTQSAALAL-IRHGINVNAIAPGVVDTPMWDQVDALFA 199 (257)
T ss_pred -------------------------CCCCCchhhhhHHHHHHHHHHHHHHh-cccCeEEEEEeeCcccchhhhhhhhhhh
Confidence 44567899999999999999999999 7789999999999999986432110000
Q ss_pred --------hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 --------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 --------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|+++++|+++....++|+.+..|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 254 (257)
T PRK07067 200 RYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGGN 254 (257)
T ss_pred hccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCCE
Confidence 00011112334567889999999999999998888999999999864
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=269.72 Aligned_cols=244 Identities=14% Similarity=0.068 Sum_probs=181.5
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh----------cCCCC-----ceEEEEec
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----------GMAKE-----NYTIMHLD 103 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~----------~~~~~-----~i~~~~~D 103 (358)
.+++||++|||||+ +|||+++|+.|+++|+ +|++.++.+ .+....+.. ...+. ++..+.+|
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga-~Vvv~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d 81 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGA-TILVGTWVP-IYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDAS 81 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCC-EEEEEeccc-hhhhhhhhcccccccccccccccchhhhhhHHHhhhh
Confidence 46899999999995 9999999999999996 888876541 111110000 00011 11112233
Q ss_pred CCC------------------HHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 104 LAS------------------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 104 l~~------------------~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
+++ .++++++++++.+.++++|+||||||... ...++.+.+.++|++.+++|+.|++.+++
T Consensus 82 ~~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~ 161 (299)
T PRK06300 82 FDTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLS 161 (299)
T ss_pred cCCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHH
Confidence 332 34689999999999999999999998753 23467788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhh-hhHHhHHHHHHH
Q 018331 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLT 243 (358)
Q Consensus 165 ~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~al~~~ 243 (358)
+++|+|+++ |+||+++|..+.. +.+++. .|+.||+|+++|
T Consensus 162 a~~p~m~~~----G~ii~iss~~~~~-----------------------------------~~p~~~~~Y~asKaAl~~l 202 (299)
T PRK06300 162 HFGPIMNPG----GSTISLTYLASMR-----------------------------------AVPGYGGGMSSAKAALESD 202 (299)
T ss_pred HHHHHhhcC----CeEEEEeehhhcC-----------------------------------cCCCccHHHHHHHHHHHHH
Confidence 999999763 6999999988763 334443 799999999999
Q ss_pred HHHHHHhhccc-CCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 244 MQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 244 ~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
+++|+.|+ .+ .||+||+|+||+++|++... ...............+..+..+|++++..++||+++....++|+.+.
T Consensus 203 t~~la~el-~~~~gIrVn~V~PG~v~T~~~~~-~~~~~~~~~~~~~~~p~~r~~~peevA~~v~~L~s~~~~~itG~~i~ 280 (299)
T PRK06300 203 TKVLAWEA-GRRWGIRVNTISAGPLASRAGKA-IGFIERMVDYYQDWAPLPEPMEAEQVGAAAAFLVSPLASAITGETLY 280 (299)
T ss_pred HHHHHHHh-CCCCCeEEEEEEeCCccChhhhc-ccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEE
Confidence 99999999 55 59999999999999986422 10000000011112334567899999999999999988889999999
Q ss_pred cCCCC
Q 018331 323 WNKDS 327 (358)
Q Consensus 323 ~d~~~ 327 (358)
.||..
T Consensus 281 vdGG~ 285 (299)
T PRK06300 281 VDHGA 285 (299)
T ss_pred ECCCc
Confidence 99874
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=258.91 Aligned_cols=239 Identities=18% Similarity=0.150 Sum_probs=196.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||+++++.|+++|+ .|++++|+.+. ...+.++.++++|+++.++++++++.+.+.
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 72 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPE--------TVDGRPAEFHAADVRDPDQVAALVDAIVER 72 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhh--------hhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 99999998644 112356889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.+++++.+.|.++.. .++||++||..+..
T Consensus 73 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~ii~isS~~~~~---------- 140 (252)
T PRK07856 73 HGRLDVLVNNAGGSPY-ALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPG-GGSIVNIGSVSGRR---------- 140 (252)
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEEcccccCC----------
Confidence 9999999999997643 34557788999999999999999999999999886421 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.+|++++.|++.++.++ .+. |++++|+||+++|++....... .
T Consensus 141 -------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~-i~v~~i~Pg~v~t~~~~~~~~~-~ 192 (252)
T PRK07856 141 -------------------------PSPGTAAYGAAKAGLLNLTRSLAVEW-APK-VRVNAVVVGLVRTEQSELHYGD-A 192 (252)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-eEEEEEEeccccChHHhhhccC-H
Confidence 45677899999999999999999999 655 9999999999999864322111 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
..........+..++.+|+|+++.+++|+++....++|+.+..|++..
T Consensus 193 ~~~~~~~~~~~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg~~ 240 (252)
T PRK07856 193 EGIAAVAATVPLGRLATPADIAWACLFLASDLASYVSGANLEVHGGGE 240 (252)
T ss_pred HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCCcc
Confidence 111111122344567899999999999999888889999999998753
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=260.02 Aligned_cols=247 Identities=20% Similarity=0.225 Sum_probs=199.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.. .....+.+...+.++.++.+|+++.++++++++++.+.
T Consensus 2 ~~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 79 (263)
T PRK08226 2 GKLTGKTALITGALQGIGEGIARVFARHGA-NLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEK 79 (263)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999999874 33344444434567889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.+++.+++|+.+++.+.+.+++++.+.. .++||++||..+..
T Consensus 80 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 146 (263)
T PRK08226 80 EGRIDILVNNAGVCRL-GSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARK--DGRIVMMSSVTGDM---------- 146 (263)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhcc----------
Confidence 9999999999998644 3556778899999999999999999999999987654 37999999977642
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
.+.+++..|+.+|++++.+++.++.++ .++||+|++|+||+++|++...-..
T Consensus 147 ------------------------~~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~ 201 (263)
T PRK08226 147 ------------------------VADPGETAYALTKAAIVGLTKSLAVEY-AQSGIRVNAICPGYVRTPMAESIARQSN 201 (263)
T ss_pred ------------------------cCCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccCHHHHhhhhhcc
Confidence 133567789999999999999999999 7789999999999999986532110
Q ss_pred h--hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 P--LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~--~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+ ............+..++.+|+|+++.+.||+++.+..++|+.+..||..
T Consensus 202 ~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~dgg~ 253 (263)
T PRK08226 202 PEDPESVLTEMAKAIPLRRLADPLEVGELAAFLASDESSYLTGTQNVIDGGS 253 (263)
T ss_pred CCCcHHHHHHHhccCCCCCCCCHHHHHHHHHHHcCchhcCCcCceEeECCCc
Confidence 0 0001111112234456789999999999999988888999999999874
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=258.93 Aligned_cols=239 Identities=19% Similarity=0.215 Sum_probs=194.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++||++|||||++|||+++++.|+++|+ +|++++|+.... ...++.++++|+++.++++++++++.+.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDD---------LPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhh---------cCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 999999986431 1246789999999999999999999999
Q ss_pred CCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||... ....+.+.+.++|++.+++|+.+++.++++++|+|.+++ .++||++||..+..
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~ii~isS~~~~~--------- 143 (260)
T PRK06523 75 LGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARG--SGVIIHVTSIQRRL--------- 143 (260)
T ss_pred cCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CcEEEEEecccccC---------
Confidence 999999999999753 223455678899999999999999999999999998764 37999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+. .+...|+.+|++++.|++.+++++ .+.||++++|+||+++|++.......
T Consensus 144 --------------------------~~~~~~~~Y~~sK~a~~~l~~~~a~~~-~~~gi~v~~i~Pg~v~t~~~~~~~~~ 196 (260)
T PRK06523 144 --------------------------PLPESTTAYAAAKAALSTYSKSLSKEV-APKGVRVNTVSPGWIETEAAVALAER 196 (260)
T ss_pred --------------------------CCCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccCccHHHHHHH
Confidence 22 256789999999999999999999 77899999999999999865321110
Q ss_pred hh-------hhhcch----hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LF-------RLLFPP----FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~-------~~~~~~----~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ...... ....+..++.+|+|+++.++||+++....++|+.+..||+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg~ 256 (260)
T PRK06523 197 LAEAAGTDYEGAKQIIMDSLGGIPLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGGT 256 (260)
T ss_pred HHhhcCCCHHHHHHHHHHHhccCccCCCCCHHHHHHHHHHHhCcccccccCceEEecCCc
Confidence 00 000000 11234456789999999999999988888999999999865
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=259.03 Aligned_cols=240 Identities=17% Similarity=0.177 Sum_probs=190.7
Q ss_pred eEEEEcCCCchHHHHHHHHHh----CCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 47 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~----~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|||||++|||++++++|++ .| .+|++++|+.+.++...+++.. .+.++.++.+|+++.++++++++++.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~ 80 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPG-SVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALREL 80 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCC-cEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhc
Confidence 699999999999999999997 79 5999999998888877777754 2457889999999999999999999887
Q ss_pred CCCc----cEEEEcccccCCC-CCCCCC-CHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 121 GRPL----DVLVCNAAVYLPT-AKEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 121 ~~~i----D~lv~~ag~~~~~-~~~~~~-~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
++++ |+||||||..... ....+. +.+.|++.+++|+.+++.+++.++|.|.++....++||++||..+..
T Consensus 81 ~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~---- 156 (256)
T TIGR01500 81 PRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQ---- 156 (256)
T ss_pred cccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCC----
Confidence 6643 6999999976432 122222 46899999999999999999999999986531237999999988763
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.+++..|+.||+|+++|++.++.|+ .+.||+||+|+||+++|++...
T Consensus 157 -------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~v~PG~v~T~~~~~ 204 (256)
T TIGR01500 157 -------------------------------PFKGWALYCAGKAARDMLFQVLALEE-KNPNVRVLNYAPGVLDTDMQQQ 204 (256)
T ss_pred -------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCCcccchHHHH
Confidence 55678899999999999999999999 7789999999999999986432
Q ss_pred cchhh-hhhhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 275 EHIPL-FRLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 275 ~~~~~-~~~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
..... ..... ......+..++.+|+|+|..++++++. ...++|+++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~p~eva~~~~~l~~~-~~~~~G~~~~~~ 255 (256)
T TIGR01500 205 VREESVDPDMRKGLQELKAKGKLVDPKVSAQKLLSLLEK-DKFKSGAHVDYY 255 (256)
T ss_pred HHHhcCChhHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCcCCcceeecc
Confidence 11000 00111 112234556789999999999999974 557999999864
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=257.49 Aligned_cols=242 Identities=19% Similarity=0.171 Sum_probs=199.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+++||++++++|+++|+ +|++++|+....+ ....+. +.++.++.+|+++.++++++++++.+.
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~-~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 86 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAE-VAAQLL--GGNAKGLVCDVSDSQSVEAAVAAVISA 86 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHH-HHHHhh--CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999875432 222332 345778999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ..+.+.+.++|++++++|+.+++.+++++.+.|.+++ .++||++||..+..
T Consensus 87 ~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 153 (255)
T PRK06841 87 FGRIDILVNSAGVALL-APAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAG--GGKIVNLASQAGVV---------- 153 (255)
T ss_pred hCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcC--CceEEEEcchhhcc----------
Confidence 8999999999998643 3455678899999999999999999999999998765 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+....|+.+|+++..++++++.++ .+.||++++|+||+++|++.......
T Consensus 154 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~-- 205 (255)
T PRK06841 154 -------------------------ALERHVAYCASKAGVVGMTKVLALEW-GPYGITVNAISPTVVLTELGKKAWAG-- 205 (255)
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCcCcCcccccccch--
Confidence 44567789999999999999999999 77899999999999999864432111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+++++.+++|+++++..++|+.+..||..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg~ 252 (255)
T PRK06841 206 EKGERAKKLIPAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGGY 252 (255)
T ss_pred hHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCc
Confidence 11111222334556889999999999999998888999999999863
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=267.76 Aligned_cols=228 Identities=23% Similarity=0.236 Sum_probs=192.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.+++..+++...+.++.++.+|+++.++++++++++.+.
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999999995 9999999998888888877766778889999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|++|||||.... ..+.+.+.++|++.+++|+.+++.+++.++|+|.++. .|+||++||..+..
T Consensus 82 ~g~iD~lVnnAG~~~~-~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~--~g~iV~isS~~~~~---------- 148 (330)
T PRK06139 82 GGRIDVWVNNVGVGAV-GRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG--HGIFINMISLGGFA---------- 148 (330)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhcC----------
Confidence 8999999999998654 3567889999999999999999999999999998875 38999999988764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||+++.+|+++|+.|+...+||+|++|+||+++|++.........
T Consensus 149 -------------------------~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~~~~~~ 203 (330)
T PRK06139 149 -------------------------AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHGANYTG 203 (330)
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCccccccccccc
Confidence 4466789999999999999999999933359999999999999986533211000
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.. ..+...+.+|+++|+.+++++..+.
T Consensus 204 ~~------~~~~~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 204 RR------LTPPPPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred cc------ccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 00 0112246799999999999997654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=261.90 Aligned_cols=260 Identities=20% Similarity=0.154 Sum_probs=190.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++||||| ||||++++++|+ +| .+|++++|+...++...+++...+.++.++++|+++.+++.++++++ +.++++
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~-~~~g~i 77 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AG-KKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATA-QTLGPV 77 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHH-HhcCCC
Confidence 579999998 699999999997 79 59999999987777776666555567889999999999999999988 457899
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC-cCCCCCCCCCc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT-LAGNVPPKANL 203 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~-~~~~~~~~~~~ 203 (358)
|+||||||... ..+.|++++++|+.+++.++++++|.|.++ +++|++||..+.... +.....+....
T Consensus 78 d~li~nAG~~~--------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~----g~iv~isS~~~~~~~~~~~~~~~~~~~ 145 (275)
T PRK06940 78 TGLVHTAGVSP--------SQASPEAILKVDLYGTALVLEEFGKVIAPG----GAGVVIASQSGHRLPALTAEQERALAT 145 (275)
T ss_pred CEEEECCCcCC--------chhhHHHHHHHhhHHHHHHHHHHHHHHhhC----CCEEEEEecccccCcccchhhhccccc
Confidence 99999999752 235699999999999999999999999753 688999998775321 00000000000
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-hhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRL 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~~~ 282 (358)
.+...+ .... ........+++..|+.||+|+..+++.+++++ .+.||+||+|+||+++|++........ ...
T Consensus 146 ~~~~~~----~~~~--~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~ 218 (275)
T PRK06940 146 TPTEEL----LSLP--FLQPDAIEDSLHAYQIAKRANALRVMAEAVKW-GERGARINSISPGIISTPLAQDELNGPRGDG 218 (275)
T ss_pred cccccc----cccc--cccccccCCccchhHHHHHHHHHHHHHHHHHH-ccCCeEEEEeccCcCcCccchhhhcCCchHH
Confidence 000000 0000 00000001346789999999999999999999 778999999999999998653221100 011
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+.+++.+|+|+|+.++||+++.+..++|+.+..|+..
T Consensus 219 ~~~~~~~~p~~r~~~peeia~~~~fL~s~~~~~itG~~i~vdgg~ 263 (275)
T PRK06940 219 YRNMFAKSPAGRPGTPDEIAALAEFLMGPRGSFITGSDFLVDGGA 263 (275)
T ss_pred HHHHhhhCCcccCCCHHHHHHHHHHHcCcccCcccCceEEEcCCe
Confidence 111222345567889999999999999988888999999999874
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=241.77 Aligned_cols=232 Identities=23% Similarity=0.289 Sum_probs=193.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc--CC
Q 018331 46 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--GR 122 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~--~~ 122 (358)
|.++||||++|||+.++++|+.. |...++.++|+.+++....+.......+++++++|+++.+++.++++++.+. ..
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~~ 83 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGSD 83 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhcccC
Confidence 45999999999999999999975 4445667778777764333443445789999999999999999999999886 56
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC---------CCCeEEEEecCCCCCCCc
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~---------~~g~iv~vsS~~~~~~~~ 193 (358)
.+|+++||||+...-....+.+.+.|.+.+++|..|+++++|+++|++++... .++.|||+||.++-++.
T Consensus 84 GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~- 162 (249)
T KOG1611|consen 84 GLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGG- 162 (249)
T ss_pred CceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCC-
Confidence 89999999999865445556778899999999999999999999999986532 23579999998876422
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
....++.+|..||+|+++|+|+++.++ .+.+|.|..+|||||.|+|-.
T Consensus 163 -------------------------------~~~~~~~AYrmSKaAlN~f~ksls~dL-~~~~ilv~sihPGwV~TDMgg 210 (249)
T KOG1611|consen 163 -------------------------------FRPGGLSAYRMSKAALNMFAKSLSVDL-KDDHILVVSIHPGWVQTDMGG 210 (249)
T ss_pred -------------------------------CCCcchhhhHhhHHHHHHHHHHhhhhh-cCCcEEEEEecCCeEEcCCCC
Confidence 123578899999999999999999999 788999999999999998654
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
. ...+++|+.+..++..+.......+|.|+++|+...
T Consensus 211 ~------------------~a~ltveeSts~l~~~i~kL~~~hnG~ffn~dlt~i 247 (249)
T KOG1611|consen 211 K------------------KAALTVEESTSKLLASINKLKNEHNGGFFNRDGTPI 247 (249)
T ss_pred C------------------CcccchhhhHHHHHHHHHhcCcccCcceEccCCCcC
Confidence 3 245699999999999999888889999999998643
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=254.67 Aligned_cols=241 Identities=17% Similarity=0.159 Sum_probs=193.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++|++|||||+||||+++++.|+++|+ +|+++. |+....+.....+ +.++.++++|+++.+++.++++++.+.
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~-~vv~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGA-RVVVNYHQSEDAAEALADEL---GDRAIALQADVTDREQVQAMFATATEH 77 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999995 777654 4555544444443 257889999999999999999999888
Q ss_pred CCC-ccEEEEcccccC-----CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 121 GRP-LDVLVCNAAVYL-----PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 121 ~~~-iD~lv~~ag~~~-----~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+++ +|++|||||... ....+.+.+.+.|++.+++|+.+++.++++++|.|.+.. .++||++||..+..
T Consensus 78 ~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~---- 151 (253)
T PRK08642 78 FGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQG--FGRIINIGTNLFQN---- 151 (253)
T ss_pred hCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcC--CeEEEEECCccccC----
Confidence 887 999999998642 112455778899999999999999999999999997654 37999999976541
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+..++..|+.||++++.+++.+++++ .+.||+||+|+||+++|+....
T Consensus 152 -------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~i~pG~v~t~~~~~ 199 (253)
T PRK08642 152 -------------------------------PVVPYHDYTTAKAALLGLTRNLAAEL-GPYGITVNMVSGGLLRTTDASA 199 (253)
T ss_pred -------------------------------CCCCccchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeecccCCchhhc
Confidence 33456689999999999999999999 7789999999999999975432
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...+. .........+..++.+|+|+++++++|+++++..++|+.+..||+
T Consensus 200 ~~~~~--~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 200 ATPDE--VFDLIAATTPLRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred cCCHH--HHHHHHhcCCcCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 21111 111112233446788999999999999998888899999999986
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=254.90 Aligned_cols=241 Identities=19% Similarity=0.199 Sum_probs=195.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.++||++|||||+|+||+++++.|+++|+ +|++++|+..+.+...+.+ +.++.++++|+++.+++.++++++.+.
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKAL---GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999995 9999999876665554443 346889999999999999999999999
Q ss_pred CCCccEEEEcccccCCC-CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||..... ..+.+.+.++|++.+++|+.+++.++++++|+|.+.. ++||++||..+..
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---g~ii~~sS~~~~~--------- 149 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHN---GAIVNLASTRARQ--------- 149 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---cEEEEEcchhhcC---------
Confidence 99999999999986432 3555678899999999999999999999999997653 7999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+.+..|+.+|++++.+++.+++++ .. +|+|++|+||+++|++.......
T Consensus 150 --------------------------~~~~~~~Y~~sKaa~~~~~~~la~~~-~~-~i~v~~i~Pg~i~t~~~~~~~~~- 200 (255)
T PRK05717 150 --------------------------SEPDTEAYAASKGGLLALTHALAISL-GP-EIRVNAVSPGWIDARDPSQRRAE- 200 (255)
T ss_pred --------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cC-CCEEEEEecccCcCCccccccch-
Confidence 33456789999999999999999998 44 59999999999999854322110
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|++++..+++++++....++|+.+..|+..
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg~ 247 (255)
T PRK05717 201 -PLSEADHAQHPAGRVGTVEDVAAMVAWLLSRQAGFVTGQEFVVDGGM 247 (255)
T ss_pred -HHHHHHhhcCCCCCCcCHHHHHHHHHHHcCchhcCccCcEEEECCCc
Confidence 00000011233456789999999999999887777899999888754
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=253.76 Aligned_cols=245 Identities=18% Similarity=0.121 Sum_probs=203.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++++++|||||+|+||++++++|+++| +.|++++|+....+.....+.. +.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEG-ARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999 4899999998777776666654 4568899999999999999999998888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|......++.+.+.+.|++.+++|+.+++.+++.+++.+.++. .++||++||..+..
T Consensus 80 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 146 (251)
T PRK07231 80 GSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEG--GGAIVNVASTAGLR----------- 146 (251)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcC-----------
Confidence 99999999999865444566778999999999999999999999999998764 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-F 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~ 280 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++++||++.|++........ .
T Consensus 147 ------------------------~~~~~~~y~~sk~~~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 201 (251)
T PRK07231 147 ------------------------PRPGLGWYNASKGAVITLTKALAAEL-GPDKIRVNAVAPVVVETGLLEAFMGEPTP 201 (251)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEECccCCCcchhhhcccCh
Confidence 44667889999999999999999998 667999999999999998644322100 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+..++.+|+|+|.+++++++++....+|+++..||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 247 (251)
T PRK07231 202 ENRAKFLATIPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGG 247 (251)
T ss_pred HHHHHHhcCCCCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCC
Confidence 1111122233345678999999999999988877899999999985
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=256.78 Aligned_cols=244 Identities=20% Similarity=0.200 Sum_probs=197.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|++|++|||||++|||++++++|+++|+ .|++++|+.+.. ...+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAK 80 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999999999995 888899987665 555555555667899999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||..... .+.+ +.++|+..+++|+.+++.+.+.++|++++.. ++||++||..+..
T Consensus 81 ~~~id~vi~~ag~~~~~-~~~~-~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~iv~~ss~~~~~---------- 145 (258)
T PRK08628 81 FGRIDGLVNNAGVNDGV-GLEA-GREAFVASLERNLIHYYVMAHYCLPHLKASR---GAIVNISSKTALT---------- 145 (258)
T ss_pred cCCCCEEEECCcccCCC-cccC-CHHHHHHHHhhhhHHHHHHHHHHHHHhhccC---cEEEEECCHHhcc----------
Confidence 99999999999975432 3333 4499999999999999999999999987653 7999999988764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.+++..|+.||++++.++++++.++ .++||++++|+||.++|++.......+
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~ 199 (258)
T PRK08628 146 -------------------------GQGGTSGYAAAKGAQLALTREWAVAL-AKDGVRVNAVIPAEVMTPLYENWIATFD 199 (258)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCHHHHHHhhhcc
Confidence 34567899999999999999999998 778999999999999998543211000
Q ss_pred --hhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 --FRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 --~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+. .++.+|+++++.+++++++.+...+|+++.+|+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~ 250 (258)
T PRK08628 200 DPEAKLAAITAKIPLGHRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGY 250 (258)
T ss_pred CHHHHHHHHHhcCCccccCCCHHHHHHHHHHHhChhhccccCceEEecCCc
Confidence 0000111111222 35789999999999999998878999999998764
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=259.56 Aligned_cols=238 Identities=21% Similarity=0.265 Sum_probs=193.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+....+ ..++.++++|+++.++++++++++.+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQ---------HENYQFVPTDVSSAEEVNHTVAEIIEKF 75 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCccccc---------cCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999995 9999998764422 2367889999999999999999999999
Q ss_pred CCccEEEEcccccCCCC--------CCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 122 RPLDVLVCNAAVYLPTA--------KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~--------~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
+++|+||||||...... ...+.+.++|++++++|+.+++.++++++++|.++. .++||++||..+..
T Consensus 76 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--- 150 (266)
T PRK06171 76 GRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQH--DGVIVNMSSEAGLE--- 150 (266)
T ss_pred CCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcC--CcEEEEEccccccC---
Confidence 99999999999753321 123578899999999999999999999999998764 37999999998764
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.+|++++.|+++++.++ .+.||+||+|+||+++++.+.
T Consensus 151 --------------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~gi~v~~v~pG~~~~t~~~ 197 (266)
T PRK06171 151 --------------------------------GSEGQSCYAATKAALNSFTRSWAKEL-GKHNIRVVGVAPGILEATGLR 197 (266)
T ss_pred --------------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeccccccCCCc
Confidence 34567789999999999999999999 778999999999999743332
Q ss_pred c-cchhh--------hhhh-cchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 274 R-EHIPL--------FRLL-FPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 274 ~-~~~~~--------~~~~-~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ..... .... ..... ..+.+++..|+|+|.++.||+++.+..++|+.+..||..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~eva~~~~fl~s~~~~~itG~~i~vdgg~ 263 (266)
T PRK06171 198 TPEYEEALAYTRGITVEQLRAGYTKTSTIPLGRSGKLSEVADLVCYLLSDRASYITGVTTNIAGGK 263 (266)
T ss_pred ChhhhhhhccccCCCHHHHHhhhcccccccCCCCCCHHHhhhheeeeeccccccceeeEEEecCcc
Confidence 2 11000 0011 11111 345577889999999999999998888999999999863
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=253.70 Aligned_cols=243 Identities=19% Similarity=0.127 Sum_probs=202.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|+++||||+|+||++++++|+++|+ .|++++|+...++...+.+...+.++.++.+|+++.+++.++++++.+.++++|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999995 999999998777777777766667889999999999999999999999999999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||+|.... .++.+.+.+.|++++++|+.+++.+++.+++.|.++.. +++||++||..+..
T Consensus 80 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~--------------- 142 (254)
T TIGR02415 80 VMVNNAGVAPI-TPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGH-GGKIINAASIAGHE--------------- 142 (254)
T ss_pred EEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEecchhhcC---------------
Confidence 99999998644 35667889999999999999999999999999987643 37999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh------
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL------ 279 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~------ 279 (358)
+.+++..|+.+|++++.|++.++.++ .+.||+|++|+||+++|++...-....
T Consensus 143 --------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~i~t~~~~~~~~~~~~~~~~ 201 (254)
T TIGR02415 143 --------------------GNPILSAYSSTKFAVRGLTQTAAQEL-APKGITVNAYCPGIVKTPMWEEIDEETSEIAGK 201 (254)
T ss_pred --------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccChhhhhhhhhhhhcccC
Confidence 44667889999999999999999999 677999999999999998642211000
Q ss_pred --hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 --FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 --~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+++++++.+|+++....++|+++..|+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g~ 251 (254)
T TIGR02415 202 PIGEGFEEFSSEIALGRPSEPEDVAGLVSFLASEDSDYITGQSILVDGGM 251 (254)
T ss_pred chHHHHHHHHhhCCCCCCCCHHHHHHHHHhhcccccCCccCcEEEecCCc
Confidence 000111222334456889999999999999998888999999999863
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=253.81 Aligned_cols=244 Identities=16% Similarity=0.155 Sum_probs=199.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++|||||+|+||++++++|+++|+ +|++ ..|+..+.+...+.++..+.++.++.+|+++.+++.++++++.+.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEF 80 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999995 7655 5788777777777776666789999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... .++.+.+.+.++..+++|+.+++.++++++++|.+++ .++||++||..+..
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~~sS~~~~~----------- 146 (250)
T PRK08063 81 GRLDVFVNNAASGVL-RPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVG--GGKIISLSSLGSIR----------- 146 (250)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhcc-----------
Confidence 999999999997644 3566778999999999999999999999999998765 37999999977652
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|++++.|+++++.++ .+.||++++|+||++.|++... ......
T Consensus 147 ------------------------~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~t~~~~~-~~~~~~ 200 (250)
T PRK08063 147 ------------------------YLENYTTVGVSKAALEALTRYLAVEL-APKGIAVNAVSGGAVDTDALKH-FPNREE 200 (250)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hHhCeEEEeEecCcccCchhhh-ccCchH
Confidence 34567789999999999999999998 7789999999999999985432 111000
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++++++|+++.++++++++....+|+++..|+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg~ 246 (250)
T PRK08063 201 LLEDARAKTPAGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGGR 246 (250)
T ss_pred HHHHHhcCCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCe
Confidence 0001111223345789999999999999887777899999999864
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=252.10 Aligned_cols=242 Identities=22% Similarity=0.227 Sum_probs=198.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|+++||||+++||+++++.|+++|+ +|+++.|+ ....+...+++...+.++.++.+|+++.++++++++++.+
T Consensus 1 ~~~~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 1 MTLSNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 77777665 3445555566655567899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|++++++|+.+++.+++++++.|.+. ++||++||..+..
T Consensus 80 ~~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~iv~~ss~~~~~--------- 145 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPL-GTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQG----GRIINLSTSVIAL--------- 145 (245)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccC----cEEEEEeeccccC---------
Confidence 99999999999998643 355677889999999999999999999999998653 6999999987653
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+++..|+.+|++++.+++.++.++ .+.||++++|+||++.|++......+.
T Consensus 146 --------------------------~~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~ 198 (245)
T PRK12937 146 --------------------------PLPGYGPYAASKAAVEGLVHVLANEL-RGRGITVNAVAPGPVATELFFNGKSAE 198 (245)
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCccCchhcccCCHH
Confidence 44677889999999999999999998 778999999999999998653322111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+..+..+|+++++.+.|++++++..++|+++..|+.
T Consensus 199 --~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 243 (245)
T PRK12937 199 --QIDQLAGLAPLERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNGG 243 (245)
T ss_pred --HHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccccEEEeCCC
Confidence 111122233445677999999999999998888899999998874
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=260.46 Aligned_cols=242 Identities=18% Similarity=0.127 Sum_probs=195.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||++++++|+++|+ +|++.+++ ....+...+++...+.++.++.+|+++.+++.++++++.+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~ 86 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVG 86 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 88888875 3455666666665667889999999999999999999988
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-----CCCeEEEEecCCCCCCCcC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-----~~g~iv~vsS~~~~~~~~~ 194 (358)
++++|+||||||.... ..+.+.+.++|+..+++|+.+++.++++++++|.++.. ..|+||++||..+..
T Consensus 87 -~g~iD~li~nAG~~~~-~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~---- 160 (306)
T PRK07792 87 -LGGLDIVVNNAGITRD-RMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLV---- 160 (306)
T ss_pred -hCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCccccc----
Confidence 9999999999998754 35667889999999999999999999999999875321 127999999988764
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.+|++++.|++.++.++ .+.||+||+|+||. .|++...
T Consensus 161 -------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~i~Pg~-~t~~~~~ 207 (306)
T PRK07792 161 -------------------------------GPVGQANYGAAKAGITALTLSAARAL-GRYGVRANAICPRA-RTAMTAD 207 (306)
T ss_pred -------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEECCCC-CCchhhh
Confidence 34567789999999999999999998 77899999999995 7765322
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
..... .... .......+|++++..++||+++.....+|+++..++...
T Consensus 208 ~~~~~----~~~~--~~~~~~~~pe~va~~v~~L~s~~~~~~tG~~~~v~gg~~ 255 (306)
T PRK07792 208 VFGDA----PDVE--AGGIDPLSPEHVVPLVQFLASPAAAEVNGQVFIVYGPMV 255 (306)
T ss_pred hcccc----chhh--hhccCCCCHHHHHHHHHHHcCccccCCCCCEEEEcCCeE
Confidence 11100 0000 011124589999999999999887789999999888653
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=252.18 Aligned_cols=244 Identities=23% Similarity=0.203 Sum_probs=195.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|++|||||++|||+++++.|+++|+ .|+++ .|+.+.++...+.+...+.++.++++|+++.+++.++++++.+.+++
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW-SVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGR 80 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 36899999999999999999999995 77665 56666666666666655668999999999999999999999888899
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~-~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
+|+||||||.......+.+.+.++|+..+++|+.+++.+++.+++.+..++ .+.++||++||..+..+.
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~---------- 150 (248)
T PRK06947 81 LDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS---------- 150 (248)
T ss_pred CCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC----------
Confidence 999999999875544566778999999999999999999999999886542 123789999998876411
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
...+..|+.||+++.++++++++++ .+.||+|++|+||+++|++......+....
T Consensus 151 ------------------------~~~~~~Y~~sK~~~~~~~~~la~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~ 205 (248)
T PRK06947 151 ------------------------PNEYVDYAGSKGAVDTLTLGLAKEL-GPHGVRVNAVRPGLIETEIHASGGQPGRAA 205 (248)
T ss_pred ------------------------CCCCcccHhhHHHHHHHHHHHHHHh-hhhCcEEEEEeccCcccccccccCCHHHHH
Confidence 1124579999999999999999998 778999999999999999654322121110
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
......+..+..+|+++++.++++++++....+|+++.+|+.
T Consensus 206 --~~~~~~~~~~~~~~e~va~~~~~l~~~~~~~~~G~~~~~~gg 247 (248)
T PRK06947 206 --RLGAQTPLGRAGEADEVAETIVWLLSDAASYVTGALLDVGGG 247 (248)
T ss_pred --HHhhcCCCCCCcCHHHHHHHHHHHcCccccCcCCceEeeCCC
Confidence 111122334567999999999999999888899999999874
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-33 Score=252.57 Aligned_cols=245 Identities=21% Similarity=0.258 Sum_probs=203.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||+|+||+++++.|+++|+ .|++++|+.++++.....+...+.++.++.+|+++.+++.++++++.+.+
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999995 99999999888777777665555678999999999999999999999889
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC------CCCeEEEEecCCCCCCCcCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY------PSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~------~~g~iv~vsS~~~~~~~~~~ 195 (358)
+++|+||||+|.... ..+.+.+.++|+.++++|+.+++.+++++++.+.++.. ..++||++||..+..
T Consensus 85 ~~~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~----- 158 (258)
T PRK06949 85 GTIDILVNNSGVSTT-QKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR----- 158 (258)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC-----
Confidence 999999999998644 34556788999999999999999999999999876531 137999999987763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.+....|+.+|+++..+++.++.++ .+.||+|++|+||+++|++....
T Consensus 159 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pG~v~t~~~~~~ 207 (258)
T PRK06949 159 ------------------------------VLPQIGLYCMSKAAVVHMTRAMALEW-GRHGINVNAICPGYIDTEINHHH 207 (258)
T ss_pred ------------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEeeCCCcCCcchhc
Confidence 34567789999999999999999998 77899999999999999864322
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
... ..........+..++..|+|+++.+.||+++.+..++|+++..||.
T Consensus 208 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~~~G~~i~~dgg 256 (258)
T PRK06949 208 WET--EQGQKLVSMLPRKRVGKPEDLDGLLLLLAADESQFINGAIISADDG 256 (258)
T ss_pred cCh--HHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCCCcEEEeCCC
Confidence 111 1111122223445678999999999999998888899999999985
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=251.41 Aligned_cols=242 Identities=19% Similarity=0.225 Sum_probs=197.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
|++|++|||||++|||++++++|+++|+ .|++ .+++....+...+++...+.++.++.+|+++.+++.++++++.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEV 79 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999996 6666 4555555555555555556678889999999999999999999989
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++++++|+.+++.+++++++.+.+++ .++||++||..+..
T Consensus 80 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~----------- 145 (246)
T PRK12938 80 GEIDVLVNNAGITRD-VVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQK----------- 145 (246)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEechhccC-----------
Confidence 999999999998644 3566778999999999999999999999999998764 37999999987663
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|+++..+++.+++++ .+.||++++|+||++.|+.... ..+.
T Consensus 146 ------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~~~t~~~~~-~~~~-- 197 (246)
T PRK12938 146 ------------------------GQFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKA-IRPD-- 197 (246)
T ss_pred ------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEecccCCchhhh-cChH--
Confidence 44567789999999999999999998 7789999999999999985432 1110
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+++++++.++||++++...++|+.+..|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g~ 243 (246)
T PRK12938 198 VLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGL 243 (246)
T ss_pred HHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCcc
Confidence 0011112223455789999999999999998888999999988753
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=253.18 Aligned_cols=240 Identities=19% Similarity=0.155 Sum_probs=195.8
Q ss_pred cCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecC-----------hHHHHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 42 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRD-----------FLKAERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 42 ~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~-----------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
++++|++|||||++ |||.+++++|+++|+ .|++++|+ ........+.+...+.+++++.+|+++.+
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 80 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPY 80 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 57899999999994 999999999999995 89999887 22222234444444567999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
++..+++++.+.++++|+||||||.... ....+.+.+.+++.+++|+.+++.+.+++++.|.++. .++||++||..+
T Consensus 81 ~~~~~~~~~~~~~g~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~ 157 (256)
T PRK12748 81 APNRVFYAVSERLGDPSILINNAAYSTH-TRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKA--GGRIINLTSGQS 157 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC--CeEEEEECCccc
Confidence 9999999999999999999999998643 3555778899999999999999999999999987654 379999999876
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. +.++...|+.+|++++.+++.++.++ .+.||+|++|+||+++
T Consensus 158 ~~-----------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~~~ 201 (256)
T PRK12748 158 LG-----------------------------------PMPDELAYAATKGAIEAFTKSLAPEL-AEKGITVNAVNPGPTD 201 (256)
T ss_pred cC-----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCccc
Confidence 52 44567789999999999999999998 7789999999999999
Q ss_pred CCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 269 TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 269 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|+........ ......+..++.+|+++++.+.+++++....++|+++.+|+..
T Consensus 202 t~~~~~~~~~------~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g~ 254 (256)
T PRK12748 202 TGWITEELKH------HLVPKFPQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGGF 254 (256)
T ss_pred CCCCChhHHH------hhhccCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCCc
Confidence 9854322111 0111223345678999999999999988778999999998753
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=238.68 Aligned_cols=238 Identities=18% Similarity=0.178 Sum_probs=206.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|.|+++++||+..|||+++++.|++.|| +|+.+.|++..+....++.. ..+..+.+|++.++.+.+.+- ..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA-~ViAvaR~~a~L~sLV~e~p---~~I~Pi~~Dls~wea~~~~l~----~v 75 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGA-QVIAVARNEANLLSLVKETP---SLIIPIVGDLSAWEALFKLLV----PV 75 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCC-EEEEEecCHHHHHHHHhhCC---cceeeeEecccHHHHHHHhhc----cc
Confidence 58899999999999999999999999997 99999999999888887754 458899999998776555443 23
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+.+|.+|||||.... .++.+.+.+.|++.|++|+.+.+.+.+...+.+..+.. +|.||++||.++..
T Consensus 76 ~pidgLVNNAgvA~~-~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~-~GaIVNvSSqas~R----------- 142 (245)
T KOG1207|consen 76 FPIDGLVNNAGVATN-HPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQI-KGAIVNVSSQASIR----------- 142 (245)
T ss_pred Cchhhhhccchhhhc-chHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccC-CceEEEecchhccc-----------
Confidence 589999999999755 47889999999999999999999999998888887764 47899999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+..+...|+++|+|+.++++.||.|+ .+..|+||+|+|-.|.|+|-..++..- .
T Consensus 143 ------------------------~~~nHtvYcatKaALDmlTk~lAlEL-Gp~kIRVNsVNPTVVmT~MG~dnWSDP-~ 196 (245)
T KOG1207|consen 143 ------------------------PLDNHTVYCATKAALDMLTKCLALEL-GPQKIRVNSVNPTVVMTDMGRDNWSDP-D 196 (245)
T ss_pred ------------------------ccCCceEEeecHHHHHHHHHHHHHhh-CcceeEeeccCCeEEEecccccccCCc-h
Confidence 67788999999999999999999999 788999999999999999776666421 2
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+-.+++.+.|.+++..+++++.+++||+++.+...+|.-+..+|+
T Consensus 197 K~k~mL~riPl~rFaEV~eVVnA~lfLLSd~ssmttGstlpveGG 241 (245)
T KOG1207|consen 197 KKKKMLDRIPLKRFAEVDEVVNAVLFLLSDNSSMTTGSTLPVEGG 241 (245)
T ss_pred hccchhhhCchhhhhHHHHHHhhheeeeecCcCcccCceeeecCC
Confidence 334566788889999999999999999999999999999988885
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=256.37 Aligned_cols=234 Identities=23% Similarity=0.248 Sum_probs=192.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-------HHHHHHHhcCCCCceEEEEecCCCHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-------~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+. ++...+++...+.++.++++|+++.+++.++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 2 MSLSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 457899999999999999999999999995 99999997532 3444455555566889999999999999999
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
++++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ +++||++||..+...
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~~-- 155 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINL-TGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSE--NPHILTLSPPLNLDP-- 155 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCC-CCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcC--CCEEEEECCchhccc--
Confidence 99999988999999999998644 3566778899999999999999999999999998764 379999998765420
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC-cccCCcc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 272 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG-~v~t~~~ 272 (358)
...+++..|+.||++++.++++++.|+ .+.||+||+|+|| +++|++.
T Consensus 156 -------------------------------~~~~~~~~Y~~sK~a~~~~~~~la~el-~~~~I~v~~i~Pg~~i~t~~~ 203 (273)
T PRK08278 156 -------------------------------KWFAPHTAYTMAKYGMSLCTLGLAEEF-RDDGIAVNALWPRTTIATAAV 203 (273)
T ss_pred -------------------------------cccCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeCCCccccHHH
Confidence 012567899999999999999999999 7789999999999 5788643
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.. ... . ..+..++.+|+++++.+++++++.....+|+++.
T Consensus 204 ~~-~~~---~------~~~~~~~~~p~~va~~~~~l~~~~~~~~~G~~~~ 243 (273)
T PRK08278 204 RN-LLG---G------DEAMRRSRTPEIMADAAYEILSRPAREFTGNFLI 243 (273)
T ss_pred Hh-ccc---c------cccccccCCHHHHHHHHHHHhcCccccceeEEEe
Confidence 22 110 0 0112356799999999999999888789999985
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=252.55 Aligned_cols=243 Identities=18% Similarity=0.154 Sum_probs=200.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+.+...+.++.++.+|+++.+++.++++++.+.+
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999877777777665556678999999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.+.++.++++|+.+++.+.+++.++|.+... .++||++||..+..
T Consensus 86 ~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~g~iv~~sS~~~~~----------- 152 (263)
T PRK07814 86 GRLDIVVNNVGGTMP-NPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSG-GGSVINISSTMGRL----------- 152 (263)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcC-CeEEEEEccccccC-----------
Confidence 999999999997644 35567788999999999999999999999999986421 47999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|+++..+++.++.++ .+ +|++++|+||++.|++..... . ..
T Consensus 153 ------------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~-~i~v~~i~Pg~v~t~~~~~~~-~-~~ 204 (263)
T PRK07814 153 ------------------------AGRGFAAYGTAKAALAHYTRLAALDL-CP-RIRVNAIAPGSILTSALEVVA-A-ND 204 (263)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-CC-CceEEEEEeCCCcCchhhhcc-C-CH
Confidence 44567789999999999999999998 54 699999999999998543210 0 01
Q ss_pred hhcch-hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... ....+..++.+|+|+++.++|++++.+...+|+++.+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 250 (263)
T PRK07814 205 ELRAPMEKATPLRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDGG 250 (263)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 11111 1122334567999999999999988777789999998875
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=251.73 Aligned_cols=243 Identities=20% Similarity=0.209 Sum_probs=196.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++||+++||||+||||++++++|+++|+ .|++++|+....+...+.+. ..++++|+++.++++++++++.+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-----~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVG-----GLFVPTDVTDEDAVNALFDTAAETY 77 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcC-----CcEEEeeCCCHHHHHHHHHHHHHHc
Confidence 37899999999999999999999999994 99999999776665555442 2578999999999999999998888
Q ss_pred CCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.... ...+.+.+.+.|++.+++|+.+++.+++.++|.|+++. .++||++||..+..+
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~g~iv~~sS~~~~~g--------- 146 (255)
T PRK06057 78 GSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQG--KGSIINTASFVAVMG--------- 146 (255)
T ss_pred CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhC--CcEEEEEcchhhccC---------
Confidence 899999999998643 23455678899999999999999999999999998764 379999999876531
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
..+++..|+.+|+++..+++.++.++ .+.||++++|+||+++|++.........
T Consensus 147 -------------------------~~~~~~~Y~~sKaal~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~~~~~~~ 200 (255)
T PRK06057 147 -------------------------SATSQISYTASKGGVLAMSRELGVQF-ARQGIRVNALCPGPVNTPLLQELFAKDP 200 (255)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCCcCCchhhhhccCCH
Confidence 11346689999999999999999998 6779999999999999986543221000
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+...+.+|+++++.+.+|+++.....+|+.+..|+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (255)
T PRK06057 201 ERAARRLVHVPMGRFAEPEEIAAAVAFLASDDASFITASTFLVDGGI 247 (255)
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCcEEEECCCe
Confidence 11111122233456789999999999999998888999999998864
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=255.02 Aligned_cols=232 Identities=17% Similarity=0.179 Sum_probs=190.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCcCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 8999999988888777777655667889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.|++++++|+.+++.++++++|.|.+++. +|+||++||..+..
T Consensus 81 ~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~-~g~iv~isS~~~~~---------- 148 (275)
T PRK05876 81 LGHVDVVFSNAGIVVG-GPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGT-GGHVVFTASFAGLV---------- 148 (275)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCChhhcc----------
Confidence 9999999999998644 45668899999999999999999999999999987642 47999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+++.+|++.++.|+ .+.||++++|+||++.|++.........
T Consensus 149 -------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 202 (275)
T PRK05876 149 -------------------------PNAGLGAYGVAKYGVVGLAETLAREV-TADGIGVSVLCPMVVETNLVANSERIRG 202 (275)
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCccccccccchhhhcC
Confidence 45677899999999999999999999 7779999999999999985433110000
Q ss_pred h--hhc---chhHHh-hhcCccchhHHhhhhhhhhcC
Q 018331 281 R--LLF---PPFQKY-ITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 281 ~--~~~---~~~~~~-~~~~~~~~~~~a~~i~~l~~~ 311 (358)
. ... ...... ....+++|+++|+.++..+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~ 239 (275)
T PRK05876 203 AACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILA 239 (275)
T ss_pred ccccccccccccccccccccCCCHHHHHHHHHHHHHc
Confidence 0 000 000000 112367999999999988854
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=248.67 Aligned_cols=244 Identities=23% Similarity=0.220 Sum_probs=203.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||+|+||+++++.|+++|+ +|++++|+.++++...+.++..+.++.++.+|+++.++++++++++.+.+
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999995 89999999887777777766556689999999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... ..+.+.+.+.++..+++|+.+++.+++++.+.+.+++ .+++|++||..+..
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 148 (250)
T PRK12939 83 GGLDGLVNNAGITNS-KSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSG--RGRIVNLASDTALW----------- 148 (250)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEECchhhcc-----------
Confidence 899999999998754 3555778899999999999999999999999988764 37999999987763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+....|+.+|++++.+++.++.++ .+.+|++++|+||+++|++....... .
T Consensus 149 ------------------------~~~~~~~y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~~--~ 201 (250)
T PRK12939 149 ------------------------GAPKLGAYVASKGAVIGMTRSLAREL-GGRGITVNAIAPGLTATEATAYVPAD--E 201 (250)
T ss_pred ------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhhCEEEEEEEECCCCCccccccCCh--H
Confidence 34556789999999999999999998 77799999999999999865332110 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+++.++++++++...++|+++.+|++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~i~~~gg~ 247 (250)
T PRK12939 202 RHAYYLKGRALERLQVPDDVAGAVLFLLSDAARFVTGQLLPVNGGF 247 (250)
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 0011111223456789999999999999987778999999999863
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=247.88 Aligned_cols=232 Identities=19% Similarity=0.197 Sum_probs=186.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||++++++|+++|+ +|++++|+........+. . .+.++.+|+++.++++++++++.+.++++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 75 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQ---A--GAQCIQADFSTNAGIMAFIDELKQHTDGL 75 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHH---c--CCEEEEcCCCCHHHHHHHHHHHHhhCCCc
Confidence 57999999999999999999999995 999999986543322222 1 36789999999999999999999989999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|++|||||..... ...+.+.++|++.+++|+.+++.+++.++|.|.+.....++||++||..+..
T Consensus 76 d~lv~~ag~~~~~-~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~-------------- 140 (236)
T PRK06483 76 RAIIHNASDWLAE-KPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEK-------------- 140 (236)
T ss_pred cEEEECCccccCC-CcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhcc--------------
Confidence 9999999986433 3446678999999999999999999999999987542237999999987653
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.+++..|+.||++++.|++.+++++ .+ +|+||+|+||++.|+.... . ....
T Consensus 141 ---------------------~~~~~~~Y~asKaal~~l~~~~a~e~-~~-~irvn~v~Pg~~~~~~~~~---~--~~~~ 192 (236)
T PRK06483 141 ---------------------GSDKHIAYAASKAALDNMTLSFAAKL-AP-EVKVNSIAPALILFNEGDD---A--AYRQ 192 (236)
T ss_pred ---------------------CCCCCccHHHHHHHHHHHHHHHHHHH-CC-CcEEEEEccCceecCCCCC---H--HHHH
Confidence 44567789999999999999999999 55 5999999999998753211 1 0111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+..+...|+|+++.+.||++ +..++|+.+..||..
T Consensus 193 ~~~~~~~~~~~~~~~~va~~~~~l~~--~~~~~G~~i~vdgg~ 233 (236)
T PRK06483 193 KALAKSLLKIEPGEEEIIDLVDYLLT--SCYVTGRSLPVDGGR 233 (236)
T ss_pred HHhccCccccCCCHHHHHHHHHHHhc--CCCcCCcEEEeCccc
Confidence 12223344567799999999999997 457899999999864
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=249.15 Aligned_cols=241 Identities=20% Similarity=0.235 Sum_probs=196.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||+|+||++++++|+++|+ .|++++|+.+.++...+++ +.++.++++|+++.+++.++++.+.+.+
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAEL---GESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 9999999876666555554 3578899999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|+|... +++|+++|..+..
T Consensus 79 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~i~~~S~~~~~----------- 142 (249)
T PRK06500 79 GRLDAVFINAGVAKF-APLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANP----ASIVLNGSINAHI----------- 142 (249)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC----CEEEEEechHhcc-----------
Confidence 999999999998643 345577889999999999999999999999998653 6899999877653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP-L 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~-~ 279 (358)
+.+....|+.+|+++++++++++.++ .++||++++++||.++|++..... .. .
T Consensus 143 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~ 197 (249)
T PRK06500 143 ------------------------GMPNSSVYAASKAALLSLAKTLSGEL-LPRGIRVNAVSPGPVQTPLYGKLGLPEAT 197 (249)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCCCHHHHhhccCccc
Confidence 34567789999999999999999998 778999999999999998643211 00 0
Q ss_pred hhhh-cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~-~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... .......+..++.+|+++++++++++++.....+|..+..|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~gg~ 246 (249)
T PRK06500 198 LDAVAAQIQALVPLGRFGTPEEIAKAVLYLASDESAFIVGSEIIVDGGM 246 (249)
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCeEEECCCc
Confidence 0111 11111223345679999999999999988878999999999864
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=250.42 Aligned_cols=244 Identities=20% Similarity=0.180 Sum_probs=196.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-C-CceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-K-ENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|++|||||+++||++++++|+++|+ .|++++|+....+...+.+... + .++.++.+|+++.+++.++++++.+.++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999994 9999999987766665555432 2 4689999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|++|||||.... ..+.+.+.+.|++.+++|+.+++.+.+++++.|.+++. .++||++||..+..
T Consensus 81 ~id~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~~~iv~~ss~~~~~------------ 146 (259)
T PRK12384 81 RVDLLVYNAGIAKA-AFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGI-QGRIIQINSKSGKV------------ 146 (259)
T ss_pred CCCEEEECCCcCCC-CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCC-CcEEEEecCccccc------------
Confidence 99999999998654 35667889999999999999999999999999987541 37999999987653
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh--
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-- 280 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~-- 280 (358)
+.+....|+.||+|+.+++++++.++ .+.||+|++|+||.+.++.+.....+..
T Consensus 147 -----------------------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~pg~~~~~~~~~~~~~~~~~ 202 (259)
T PRK12384 147 -----------------------GSKHNSGYSAAKFGGVGLTQSLALDL-AEYGITVHSLMLGNLLKSPMFQSLLPQYAK 202 (259)
T ss_pred -----------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCcccchhhhhhhHHHHH
Confidence 23456789999999999999999998 7789999999999763333322221110
Q ss_pred ------hhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 ------RLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ------~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... .....+.+++..++|+++++++|+++.+..++|+.+..|++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~~~~v~~g~ 256 (259)
T PRK12384 203 KLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQ 256 (259)
T ss_pred hcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCceEEEcCCE
Confidence 01111 112345567889999999999999987777899999988864
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=247.82 Aligned_cols=243 Identities=19% Similarity=0.165 Sum_probs=198.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+|+||++++++|+++| .+|++++|+....+...+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREG-ASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 59999999987766666666544557789999999999999999999999
Q ss_pred CCCccEEEEcccccCC--CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++++|+||||||.... ...+.+.+.+.+++++++|+.+++.+++++++++.+.+ .++||++||..++.
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------- 150 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRG--GGAIVNQSSTAAWL-------- 150 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhC--CcEEEEEecccccC--------
Confidence 8999999999998642 23455678899999999999999999999999997754 37999999987652
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+...|+.||++++.+++++++++ ...||++++++||.+.|++.......
T Consensus 151 ------------------------------~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~ 199 (250)
T PRK07774 151 ------------------------------YSNFYGLAKVGLNGLTQQLAREL-GGMNIRVNAIAPGPIDTEATRTVTPK 199 (250)
T ss_pred ------------------------------CccccHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCcccCccccccCCH
Confidence 34579999999999999999998 67899999999999999865332111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+...+.+|+++++.+++++.......+|++|.++++.
T Consensus 200 --~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~v~~g~ 246 (250)
T PRK07774 200 --EFVADMVKGIPLSRMGTPEDLVGMCLFLLSDEASWITGQIFNVDGGQ 246 (250)
T ss_pred --HHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhhCcCCCEEEECCCe
Confidence 11111222233344678999999999999876656799999988864
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=248.17 Aligned_cols=244 Identities=20% Similarity=0.159 Sum_probs=201.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||+|+||++++++|+++| +.|++++|+....+.....+...+.++.++++|+++.++++++++++.+.++
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 79 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEG-AKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALG 79 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999 5999999998777766666655566799999999999999999999999889
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||+|.... ..+.+.+.+.|+..+++|+.+++.+++++++.|.+.+ .++||++||..+..
T Consensus 80 ~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~iss~~~~~------------ 144 (250)
T TIGR03206 80 PVDVLVNNAGWDKF-GPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERG--AGRIVNIASDAARV------------ 144 (250)
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEECchhhcc------------
Confidence 99999999998643 3555678899999999999999999999999998764 37999999988764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh---
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--- 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~--- 279 (358)
+.++...|+.+|+|++.+++.+++++ .+.+|++++|+||+++|++........
T Consensus 145 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~ 200 (250)
T TIGR03206 145 -----------------------GSSGEAVYAACKGGLVAFSKTMAREH-ARHGITVNVVCPGPTDTALLDDICGGAENP 200 (250)
T ss_pred -----------------------CCCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEecCcccchhHHhhhhccCCh
Confidence 34567789999999999999999998 677999999999999998543311100
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...........+.+.+.+|+|+|+++.++++++...++|+.+..|+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 201 EKLREAFTRAIPLGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred HHHHHHHHhcCCccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 00111122233445578999999999999999888899999998875
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=248.53 Aligned_cols=249 Identities=20% Similarity=0.211 Sum_probs=196.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++|++|||||++|||+++++.|+++| ++|++++|+.+.++...+.+... ...+.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g-~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAG-GIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999 59999999988877776666332 335677899999999999999999998
Q ss_pred CCCccEEEEcccccCC--CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++++|+||||||.... ...+.+.+.+.|+..+++|+.+++.++++++|+|.+++ .++||++||..+.....
T Consensus 81 ~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~----- 153 (256)
T PRK09186 81 YGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQG--GGNLVNISSIYGVVAPK----- 153 (256)
T ss_pred cCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcC--CceEEEEechhhhcccc-----
Confidence 9999999999986432 23456788999999999999999999999999998765 37999999987753110
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
...+ +..+......|+.||++++++++.+++++ .+.||++++|+||.+.++.. ...
T Consensus 154 -~~~~-------------------~~~~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~~i~v~~i~Pg~~~~~~~-~~~-- 209 (256)
T PRK09186 154 -FEIY-------------------EGTSMTSPVEYAAIKAGIIHLTKYLAKYF-KDSNIRVNCVSPGGILDNQP-EAF-- 209 (256)
T ss_pred -chhc-------------------cccccCCcchhHHHHHHHHHHHHHHHHHh-CcCCeEEEEEecccccCCCC-HHH--
Confidence 0000 00111223479999999999999999999 77899999999999987531 111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ......+..++.+|+|+|+.+++++++.....+|+++..|+..
T Consensus 210 -~~---~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 254 (256)
T PRK09186 210 -LN---AYKKCCNGKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDGF 254 (256)
T ss_pred -HH---HHHhcCCccCCCCHHHhhhhHhheeccccccccCceEEecCCc
Confidence 00 1111123356789999999999999988878999999988863
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=248.24 Aligned_cols=214 Identities=14% Similarity=0.159 Sum_probs=179.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++||||++|||++++++|+ +| .+|++++|+.++++...++++..+. .+.++++|++|.++++++++++.+.++++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g-~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 78 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HG-EDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEI 78 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CC-CEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCC
Confidence 579999999999999999999 59 5999999999888888777765443 58899999999999999999999989999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|++|||||..... ...+.+.+.+.+++++|+.+++.+++.++|.|.++.. +|+||++||..+..
T Consensus 79 d~lv~nag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~-------------- 142 (246)
T PRK05599 79 SLAVVAFGILGDQ-ERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTA-PAAIVAFSSIAGWR-------------- 142 (246)
T ss_pred CEEEEecCcCCCc-hhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC-CCEEEEEecccccc--------------
Confidence 9999999987543 3445667778889999999999999999999986531 38999999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||+|+.+|++.++.|+ .+.||+||+|+||+++|++..... +
T Consensus 143 ---------------------~~~~~~~Y~asKaa~~~~~~~la~el-~~~~I~v~~v~PG~v~T~~~~~~~-~------ 193 (246)
T PRK05599 143 ---------------------ARRANYVYGSTKAGLDAFCQGLADSL-HGSHVRLIIARPGFVIGSMTTGMK-P------ 193 (246)
T ss_pred ---------------------CCcCCcchhhHHHHHHHHHHHHHHHh-cCCCceEEEecCCcccchhhcCCC-C------
Confidence 44567799999999999999999999 778999999999999998542211 1
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.....+|+++|+.+++++....
T Consensus 194 -------~~~~~~pe~~a~~~~~~~~~~~ 215 (246)
T PRK05599 194 -------APMSVYPRDVAAAVVSAITSSK 215 (246)
T ss_pred -------CCCCCCHHHHHHHHHHHHhcCC
Confidence 0113589999999999998753
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=248.72 Aligned_cols=245 Identities=18% Similarity=0.201 Sum_probs=201.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+|+||+++++.|+++|+ +|++++|+++..+...+.+...+.++.++++|+++.+++.++++++.+.+
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999887777777776666778899999999999999999998888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHH-hcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l-~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||+|.... ....+.+.+.++..+++|+.+++.+++.+++.+ .+.. .++||++||..+..
T Consensus 83 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~--~~~iv~~ss~~~~~---------- 149 (262)
T PRK13394 83 GSVDILVSNAGIQIV-NPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDR--GGVVIYMGSVHSHE---------- 149 (262)
T ss_pred CCCCEEEECCccCCC-CchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcC--CcEEEEEcchhhcC----------
Confidence 999999999998643 344566789999999999999999999999999 5543 47999999987653
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|+++..+++.++.++ .+.+|++++|+||++.|+..........
T Consensus 150 -------------------------~~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~ 203 (262)
T PRK13394 150 -------------------------ASPLKSAYVTAKHGLLGLARVLAKEG-AKHNVRSHVVCPGFVRTPLVDKQIPEQA 203 (262)
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccchhhhhhhHhhh
Confidence 33456789999999999999999998 7789999999999999986533221111
Q ss_pred hh--------hcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RL--------LFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~--------~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. ....+. ......+++++|++++++++++.+....+|+++..|+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~~~~~~~g 258 (262)
T PRK13394 204 KELGISEEEVVKKVMLGKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQSFVVSHG 258 (262)
T ss_pred hccCCChHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHcCccccCCcCCEEeeCCc
Confidence 00 000110 11234588999999999999998777789999999875
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=274.96 Aligned_cols=245 Identities=20% Similarity=0.217 Sum_probs=200.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.+
T Consensus 2 ~~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (520)
T PRK06484 2 KAQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSL---GPDHHALAMDVSDEAQIREGFEQLHREF 77 (520)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEeccCCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999995 9999999987777666555 3567889999999999999999999999
Q ss_pred CCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.... ...+.+.+.++|++++++|+.+++.++++++|+|.+++. +++||++||..+..
T Consensus 78 g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-g~~iv~isS~~~~~---------- 146 (520)
T PRK06484 78 GRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGH-GAAIVNVASGAGLV---------- 146 (520)
T ss_pred CCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCeEEEECCcccCC----------
Confidence 999999999998532 234567889999999999999999999999999977542 24999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.+|+++..|++.+++|+ .+.||+|++|+||+++|++...-.....
T Consensus 147 -------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~ 200 (520)
T PRK06484 147 -------------------------ALPKRTAYSASKAAVISLTRSLACEW-AAKGIRVNAVLPGYVRTQMVAELERAGK 200 (520)
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCcCchhhhhhcccch
Confidence 44667899999999999999999999 7789999999999999986432110000
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+++++.+++++++.....+|+.+..++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~va~~v~~l~~~~~~~~~G~~~~~~gg~ 247 (520)
T PRK06484 201 LDPSAVRSRIPLGRLGRPEEIAEAVFFLASDQASYITGSTLVVDGGW 247 (520)
T ss_pred hhhHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCceEEecCCe
Confidence 00011111223345679999999999999988888999999888764
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=246.19 Aligned_cols=245 Identities=24% Similarity=0.221 Sum_probs=200.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+|+||++++++|+++|+ +|++++|+.+..+...+.+. .+.++.++++|+++.++++++++++.+.
T Consensus 1 m~~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~ 78 (252)
T PRK06138 1 MRLAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999995 99999999877766666554 4567899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ....+.+.++++..+++|+.+++.+++.+++.|++.. .++||++||..+..
T Consensus 79 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~sS~~~~~---------- 145 (252)
T PRK06138 79 WGRLDVLVNNAGFGCG-GTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQG--GGSIVNTASQLALA---------- 145 (252)
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcC--CeEEEEECChhhcc----------
Confidence 9999999999998654 3455678899999999999999999999999998764 37999999988764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|+.+|++++.+++.++.++ ...||++++|+||.+.|++..+.....
T Consensus 146 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~ 199 (252)
T PRK06138 146 -------------------------GGRGRAAYVASKGAIASLTRAMALDH-ATDGIRVNAVAPGTIDTPYFRRIFARHA 199 (252)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEECCccCcchhhhhcccc
Confidence 33567789999999999999999998 677999999999999998643321100
Q ss_pred -hhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 -FRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 -~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
........ ...+...+.+++++++.+++++..+....+|.++.+|+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 200 DPEALREALRARHPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred ChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 00000001 111223467899999999999999888899999999875
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-32 Score=244.09 Aligned_cols=233 Identities=24% Similarity=0.206 Sum_probs=192.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCC--HHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS--LDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~--~~~i~~~~~~~ 117 (358)
.+|++|+++||||+||||++++++|+++| .+|++++|+...++...+++... +..+.++.+|+++ .+++.++++++
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i 80 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAG-ATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATI 80 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcC-CEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHH
Confidence 46889999999999999999999999999 49999999988777776666432 3457788999975 57889999988
Q ss_pred HhcC-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 118 RRSG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 118 ~~~~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.+.+ +++|+||||||......++.+.+.+.|++.+++|+.+++.++++++|.|.+.+ .+++|++||..+..
T Consensus 81 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~------ 152 (239)
T PRK08703 81 AEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSP--DASVIFVGESHGET------ 152 (239)
T ss_pred HHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCC--CCEEEEEecccccc------
Confidence 8877 78999999999864434566788999999999999999999999999998764 37999999977653
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.||++++.|++.++.++....+|+|+.|+||+|+|++..+..
T Consensus 153 -----------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~~~ 203 (239)
T PRK08703 153 -----------------------------PKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIKSH 203 (239)
T ss_pred -----------------------------CCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccccC
Confidence 445677899999999999999999983334799999999999999654321
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.. .. .....++++++..++|++++.+..++|+.+.
T Consensus 204 ~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 238 (239)
T PRK08703 204 PG---EA--------KSERKSYGDVLPAFVWWASAESKGRSGEIVY 238 (239)
T ss_pred CC---CC--------ccccCCHHHHHHHHHHHhCccccCcCCeEee
Confidence 10 00 0123599999999999999888889999875
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-32 Score=246.52 Aligned_cols=248 Identities=21% Similarity=0.215 Sum_probs=201.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||+|+||.+++++|+++|+ +|++++|+.+.++...+.+...+.++.++++|+++.++++++++++.+.
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~ 86 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLER 86 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999987777777666655667889999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHH-HhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~-l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... ....+.+.+.|++.+++|+.+++.+++++.++ +.++. .+++|++||..+..+..
T Consensus 87 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~--~~~~v~~sS~~~~~~~~------ 157 (259)
T PRK08213 87 FGHVDILVNNAGATWG-APAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRG--YGRIINVASVAGLGGNP------ 157 (259)
T ss_pred hCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcC--CeEEEEECChhhccCCC------
Confidence 8899999999997543 34556788999999999999999999999998 66543 37999999987653110
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
....+...|+.+|++++.+++++++++ .+.||++++|+||+++|++...-....
T Consensus 158 -------------------------~~~~~~~~Y~~sKa~~~~~~~~~a~~~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~ 211 (259)
T PRK08213 158 -------------------------PEVMDTIAYNTSKGAVINFTRALAAEW-GPHGIRVNAIAPGFFPTKMTRGTLERL 211 (259)
T ss_pred -------------------------ccccCcchHHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCcCCCcchhhhhHHH
Confidence 011345789999999999999999999 778999999999999998543211111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+...+.+|++++..+++++++.+...+|+.+..|+..
T Consensus 212 ---~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~~~ 256 (259)
T PRK08213 212 ---GEDLLAHTPLGRLGDDEDLKGAALLLASDASKHITGQILAVDGGV 256 (259)
T ss_pred ---HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 111222334445678999999999999998888999999999853
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=243.24 Aligned_cols=232 Identities=22% Similarity=0.256 Sum_probs=184.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+||||++++++|+++|+ +|+++.| +.+..+...+++ .+.++.+|+++.+++.+++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~-----~~~~~~~D~~~~~~~~~~~~~---- 72 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQET-----GATAVQTDSADRDAVIDVVRK---- 72 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHh-----CCeEEecCCCCHHHHHHHHHH----
Confidence 47899999999999999999999999995 7877665 444444443332 356788999999988777653
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||..... ...+.+.++|++.+++|+.+++.+++.+++.|.+. ++||++||..+..
T Consensus 73 ~~~id~li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----g~iv~isS~~~~~---------- 137 (237)
T PRK12742 73 SGALDILVVNAGIAVFG-DALELDADDIDRLFKINIHAPYHASVEAARQMPEG----GRIIIIGSVNGDR---------- 137 (237)
T ss_pred hCCCcEEEECCCCCCCC-CcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC----CeEEEEecccccc----------
Confidence 56899999999986443 44567889999999999999999999999998653 7999999987631
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.+.++...|+.+|++++.+++.++.++ .+.||+||+|+||+++|++... ..+..
T Consensus 138 ------------------------~~~~~~~~Y~~sKaa~~~~~~~la~~~-~~~gi~v~~v~Pg~~~t~~~~~-~~~~~ 191 (237)
T PRK12742 138 ------------------------MPVAGMAAYAASKSALQGMARGLARDF-GPRGITINVVQPGPIDTDANPA-NGPMK 191 (237)
T ss_pred ------------------------CCCCCCcchHHhHHHHHHHHHHHHHHH-hhhCeEEEEEecCcccCCcccc-ccHHH
Confidence 134567789999999999999999999 7789999999999999985432 21111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. .....+..++.+|+|+++.+.||+++.+..++|+.+.+||..
T Consensus 192 ~~---~~~~~~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg~ 235 (237)
T PRK12742 192 DM---MHSFMAIKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGAF 235 (237)
T ss_pred HH---HHhcCCCCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCCCc
Confidence 11 111223456789999999999999998888999999999863
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=257.32 Aligned_cols=227 Identities=21% Similarity=0.217 Sum_probs=190.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|+++||||++|||+++++.|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++.+.+.
T Consensus 4 ~~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 4 KPIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988888887777666778999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|++|||||.... ..+.+.+.+++++.+++|+.+++.+++.++|+|.+++ .++||++||..+..
T Consensus 83 ~g~iD~lInnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~--~g~iV~isS~~~~~---------- 149 (334)
T PRK07109 83 LGPIDTWVNNAMVTVF-GPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD--RGAIIQVGSALAYR---------- 149 (334)
T ss_pred CCCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEeCChhhcc----------
Confidence 9999999999998644 3566889999999999999999999999999998864 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccchhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+....|+.||+++..|+++++.|+.. ..+|+++.|+||.++|++.....
T Consensus 150 -------------------------~~~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~~~--- 201 (334)
T PRK07109 150 -------------------------SIPLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDWAR--- 201 (334)
T ss_pred -------------------------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhhhh---
Confidence 4456788999999999999999999833 25799999999999998542211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
... .. ...+..++.+|+++|+.++++++++
T Consensus 202 -~~~-~~-~~~~~~~~~~pe~vA~~i~~~~~~~ 231 (334)
T PRK07109 202 -SRL-PV-EPQPVPPIYQPEVVADAILYAAEHP 231 (334)
T ss_pred -hhc-cc-cccCCCCCCCHHHHHHHHHHHHhCC
Confidence 000 00 0111234679999999999999876
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=244.41 Aligned_cols=243 Identities=21% Similarity=0.198 Sum_probs=193.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|++|||||+++||.+++++|+++|+ .|+++. |++...+.....+...+.++.++++|+++.+++.++++++.+.+++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGY-AVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGR 80 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-eEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 57899999999999999999999995 777765 5555555555555555567889999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
+|+||||||.......+.+.+.++|++++++|+.+++.+++++++.+.++.. .+++||++||..+..
T Consensus 81 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------------ 148 (248)
T PRK06123 81 LDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARL------------ 148 (248)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcC------------
Confidence 9999999998754445667788999999999999999999999999876421 137899999988764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCch-hhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++ +..|+.+|++++.|++.++.++ .++||++++|+||.+.|++......+.
T Consensus 149 -----------------------~~~~~~~~Y~~sKaa~~~~~~~la~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~~-- 202 (248)
T PRK06123 149 -----------------------GSPGEYIDYAASKGAIDTMTIGLAKEV-AAEGIRVNAVRPGVIYTEIHASGGEPG-- 202 (248)
T ss_pred -----------------------CCCCCccchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccCchhhccCCHH--
Confidence 2222 3469999999999999999998 778999999999999998543221111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+..+..+|+++++++++++++.....+|+++..++.
T Consensus 203 ~~~~~~~~~p~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~gg 247 (248)
T PRK06123 203 RVDRVKAGIPMGRGGTAEEVARAILWLLSDEASYTTGTFIDVSGG 247 (248)
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEeecCC
Confidence 111111122344556899999999999998776789999998873
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=246.58 Aligned_cols=244 Identities=21% Similarity=0.231 Sum_probs=203.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||+|+||++++++|+++| +.|++++|+.+..+....++...+.+++++.+|+++.+++.++++.+.+.++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEG-AKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999 5999999998887777777766667899999999999999999999999888
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||+|.... ....+.+.+.++..+++|+.+++.+++.+++.|++++ .++||++||..+..
T Consensus 81 ~~d~vi~~a~~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~------------ 145 (258)
T PRK12429 81 GVDILVNNAGIQHV-APIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQG--GGRIINMASVHGLV------------ 145 (258)
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcC--CeEEEEEcchhhcc------------
Confidence 99999999998654 3455678899999999999999999999999998765 37999999988764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh--
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-- 280 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~-- 280 (358)
+.++...|+.+|+++..+++.++.++ .+.+|++++++||++.|++.........
T Consensus 146 -----------------------~~~~~~~y~~~k~a~~~~~~~l~~~~-~~~~i~v~~~~pg~v~~~~~~~~~~~~~~~ 201 (258)
T PRK12429 146 -----------------------GSAGKAAYVSAKHGLIGLTKVVALEG-ATHGVTVNAICPGYVDTPLVRKQIPDLAKE 201 (258)
T ss_pred -----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCcchhhhhhhhhhccc
Confidence 44677899999999999999999998 7789999999999999986533211110
Q ss_pred ------hhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 ------RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ------~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
......+ ...+.+.+++++|+|+.+++++.+.....+|+++.+|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 254 (258)
T PRK12429 202 RGISEEEVLEDVLLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQAWVVDGG 254 (258)
T ss_pred cCCChHHHHHHHHhccCCccccCCHHHHHHHHHHHcCccccCccCCeEEeCCC
Confidence 0000111 111235688999999999999988777789999999875
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=245.88 Aligned_cols=231 Identities=21% Similarity=0.218 Sum_probs=185.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|+++||||++|||++++++|+++|+ .|++++|+.... ...++.++.+|+++. ++++.+.
T Consensus 1 ~~l~~k~~lVtGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~---------~~~~~~~~~~D~~~~------~~~~~~~ 64 (235)
T PRK06550 1 QEFMTKTVLITGAASGIGLAQARAFLAQGA-QVYGVDKQDKPD---------LSGNFHFLQLDLSDD------LEPLFDW 64 (235)
T ss_pred CCCCCCEEEEcCCCchHHHHHHHHHHHCCC-EEEEEeCCcccc---------cCCcEEEEECChHHH------HHHHHHh
Confidence 358899999999999999999999999995 899999875321 124678999999987 4444455
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.+.+++ .++||++||..+..
T Consensus 65 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 132 (235)
T PRK06550 65 VPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERK--SGIIINMCSIASFV---------- 132 (235)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcc----------
Confidence 678999999999764333556778899999999999999999999999998765 37999999988764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||+++|++....+.. .
T Consensus 133 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~ 185 (235)
T PRK06550 133 -------------------------AGGGGAAYTASKHALAGFTKQLALDY-AKDGIQVFGIAPGAVKTPMTAADFEP-G 185 (235)
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCccCcccccccCc-h
Confidence 34567789999999999999999999 67899999999999999854333211 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+..++.+|+|+|+.++||+++.....+|+.+..|++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 186 GLADWVARETPIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred HHHHHHhccCCcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 0001111223445678999999999999998887899999999986
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=239.08 Aligned_cols=235 Identities=17% Similarity=0.229 Sum_probs=189.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++||.+++|||.||||+++++.|+++|+ .+.++..+.+..+ +..++++ +...+.+++||+++..++++.++++.
T Consensus 1 m~~tGKna~vtggagGIGl~~sk~Ll~kgi-k~~~i~~~~En~~-a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~ 78 (261)
T KOG4169|consen 1 MDLTGKNALVTGGAGGIGLATSKALLEKGI-KVLVIDDSEENPE-AIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKIL 78 (261)
T ss_pred CcccCceEEEecCCchhhHHHHHHHHHcCc-hheeehhhhhCHH-HHHHHhccCCCceEEEEEeccccHHHHHHHHHHHH
Confidence 368999999999999999999999999997 5555554443433 3333433 35679999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~-~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
..+|.||++||+||+.. +.+|++++.+|+.|..+-+..++|+|.++. .++|-|||+||+.|..
T Consensus 79 ~~fg~iDIlINgAGi~~---------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~------- 142 (261)
T KOG4169|consen 79 ATFGTIDILINGAGILD---------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLD------- 142 (261)
T ss_pred HHhCceEEEEccccccc---------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccC-------
Confidence 99999999999999973 455999999999999999999999998664 3579999999999983
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhh-cccCCcEEEEecCCcccCCcccccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF-HEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~-~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
|.+....|++||+++.+|+|++|... ..+.||++++||||+++|+ +..+.
T Consensus 143 ----------------------------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~-l~~~~ 193 (261)
T KOG4169|consen 143 ----------------------------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTD-LAENI 193 (261)
T ss_pred ----------------------------ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHH-HHHHH
Confidence 77889999999999999999998773 2678999999999999997 43433
Q ss_pred hh------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 277 IP------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 277 ~~------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.. ......+.+.+. ...+|..|+..++.+++. ..+|+.|-.+....
T Consensus 194 ~~~~~~~e~~~~~~~~l~~~---~~q~~~~~a~~~v~aiE~---~~NGaiw~v~~g~l 245 (261)
T KOG4169|consen 194 DASGGYLEYSDSIKEALERA---PKQSPACCAINIVNAIEY---PKNGAIWKVDSGSL 245 (261)
T ss_pred HhcCCcccccHHHHHHHHHc---ccCCHHHHHHHHHHHHhh---ccCCcEEEEecCcE
Confidence 11 111112222222 356899999999999977 47999999988763
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=245.15 Aligned_cols=238 Identities=19% Similarity=0.179 Sum_probs=195.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||+++||++++++|+++| +.|++++|+. +...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G-~~v~~~~~~~---------~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 73 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAG-AKVIGFDQAF---------LTQEDYPFATFVLDVSDAAAVAQVCQRLLAE 73 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEecch---------hhhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999 5999999985 1122457889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ..+.+.+.+++++.+++|+.+++.+++++++.|+++. .++||++||..+..
T Consensus 74 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~ss~~~~~---------- 140 (252)
T PRK08220 74 TGPLDVLVNAAGILRM-GATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQR--SGAIVTVGSNAAHV---------- 140 (252)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECCchhcc----------
Confidence 9999999999998654 3556778899999999999999999999999998764 37999999987653
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|+.+|+++..+++.+++++ .+.||+|++|+||++.|++...-....
T Consensus 141 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~ 194 (252)
T PRK08220 141 -------------------------PRIGMAAYGASKAALTSLAKCVGLEL-APYGVRCNVVSPGSTDTDMQRTLWVDED 194 (252)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hHhCeEEEEEecCcCcchhhhhhccchh
Confidence 44567889999999999999999998 778999999999999998643211100
Q ss_pred -hhh-----hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -FRL-----LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -~~~-----~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ........+..++.+|+|+|+++++|+++....++|+.+..|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~i~~~gg~ 248 (252)
T PRK08220 195 GEQQVIAGFPEQFKLGIPLGKIARPQEIANAVLFLASDLASHITLQDIVVDGGA 248 (252)
T ss_pred hhhhhhhhHHHHHhhcCCCcccCCHHHHHHHHHHHhcchhcCccCcEEEECCCe
Confidence 000 001111234456889999999999999988888999999999863
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=250.74 Aligned_cols=254 Identities=19% Similarity=0.162 Sum_probs=197.2
Q ss_pred eeehhhhhhcccceeeccccccCCCCcCCCCccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 018331 6 EFTLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 85 (358)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~ 85 (358)
+.|++++..|--+....+-.+.- .. -+..+...+.+++|+++||||+||||+++++.|+++| ++|++++|+.+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G-~~Vi~~~R~~~~l~~ 79 (293)
T PRK05866 3 KRPLRRLTDQLTLAGMRPPISPQ-LL-INRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRG-ATVVAVARREDLLDA 79 (293)
T ss_pred cchHHHHHHHHHHhccCCCCCch-hh-cCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHH
Confidence 45777777665554433311110 00 1113334567899999999999999999999999999 599999999888877
Q ss_pred HHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCC--CCHHhHHhhhhhhhhHHHHHH
Q 018331 86 AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLS 163 (358)
Q Consensus 86 ~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~--~~~~~~~~~~~vN~~~~~~l~ 163 (358)
..+++...+.++.++++|+++.+++.++++++.+.++++|+||||||..... .+.+ .+.++++.++++|+.|++.++
T Consensus 80 ~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~id~li~~AG~~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~ 158 (293)
T PRK05866 80 VADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAGRSIRR-PLAESLDRWHDVERTMVLNYYAPLRLI 158 (293)
T ss_pred HHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCc-chhhccccHHHHHHHHHHHHHHHHHHH
Confidence 7777755556788999999999999999999999999999999999986443 2222 245788999999999999999
Q ss_pred HHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHH
Q 018331 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT 243 (358)
Q Consensus 164 ~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~ 243 (358)
++++|+|.+.+ .++||++||..+.. .+.++...|+.||+|+.+|
T Consensus 159 ~~~~~~~~~~~--~g~iv~isS~~~~~----------------------------------~~~p~~~~Y~asKaal~~l 202 (293)
T PRK05866 159 RGLAPGMLERG--DGHIINVATWGVLS----------------------------------EASPLFSVYNASKAALSAV 202 (293)
T ss_pred HHHHHHHHhcC--CcEEEEECChhhcC----------------------------------CCCCCcchHHHHHHHHHHH
Confidence 99999998765 38999999975442 1234567899999999999
Q ss_pred HHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 244 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 244 ~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
+++++.|+ .+.||+|++|+||.++|++...... .. .....+|+++|+.++..+...
T Consensus 203 ~~~la~e~-~~~gI~v~~v~pg~v~T~~~~~~~~------~~------~~~~~~pe~vA~~~~~~~~~~ 258 (293)
T PRK05866 203 SRVIETEW-GDRGVHSTTLYYPLVATPMIAPTKA------YD------GLPALTADEAAEWMVTAARTR 258 (293)
T ss_pred HHHHHHHh-cccCcEEEEEEcCcccCcccccccc------cc------CCCCCCHHHHHHHHHHHHhcC
Confidence 99999999 7789999999999999986532110 00 112469999999999988653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=245.25 Aligned_cols=248 Identities=20% Similarity=0.205 Sum_probs=201.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|+++||||+++||++++++|+++|+..|++++|+.+..+.....+...+.++.++.+|+++.+++.++++.+.+.+
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999996339999998776666666665556678899999999999999999998888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... ..+.+.+.+.|+.++++|+.+++.+++++++.+.++.. .+++|++||..+..
T Consensus 83 g~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~g~iv~~ss~~~~~----------- 149 (260)
T PRK06198 83 GRLDALVNAAGLTDR-GTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKA-EGTIVNIGSMSAHG----------- 149 (260)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CCEEEEECCccccc-----------
Confidence 999999999998644 34557789999999999999999999999999976532 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~- 280 (358)
+.++...|+.+|++++.+++.++.++ ...+|++++|+||++.|++.......+.
T Consensus 150 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~ 204 (260)
T PRK06198 150 ------------------------GQPFLAAYCASKGALATLTRNAAYAL-LRNRIRVNGLNIGWMATEGEDRIQREFHG 204 (260)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeccccCcchhhhhhhccC
Confidence 33556789999999999999999998 6789999999999999985321110000
Q ss_pred --hhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 --RLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 --~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..+.. .....+..++.+++++++.+++++++.....+|+++.+|+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~~ 254 (260)
T PRK06198 205 APDDWLEKAAATQPFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQSV 254 (260)
T ss_pred CChHHHHHHhccCCccCCcCHHHHHHHHHHHcChhhCCccCceEeECCcc
Confidence 00001 111223345789999999999999988777999999999864
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=246.60 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=186.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC----hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~----~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++++|++|||||++|||+++++.|+++|+ +|++++++ .+..+...+++...+.++.++++|+++.++++++++++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~-~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 83 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGA-KAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-cEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHH
Confidence 57899999999999999999999999995 75555432 23444455555544567889999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEE-ecCCCCCCCcCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIV-GSITGNTNTLAGN 196 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~v-sS~~~~~~~~~~~ 196 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+. ++++++ ||..+.
T Consensus 84 ~~~~~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----~~iv~~~ss~~~~------- 151 (257)
T PRK12744 84 KAAFGRPDIAINTVGKVLK-KPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDN----GKIVTLVTSLLGA------- 151 (257)
T ss_pred HHhhCCCCEEEECCcccCC-CCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccC----CCEEEEecchhcc-------
Confidence 9988999999999998644 355677889999999999999999999999998754 577776 454443
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+.+..|+.||+|++.|++++++|+ .+.||+|++|+||++.|++.....
T Consensus 152 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~t~~~~~~~ 201 (257)
T PRK12744 152 -----------------------------FTPFYSAYAGSKAPVEHFTRAASKEF-GARGISVTAVGPGPMDTPFFYPQE 201 (257)
T ss_pred -----------------------------cCCCcccchhhHHHHHHHHHHHHHHh-CcCceEEEEEecCccccchhcccc
Confidence 12456789999999999999999999 677999999999999998653321
Q ss_pred hhhhhhh-c--chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 277 IPLFRLL-F--PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ~~~~~~~-~--~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.+..... . .........++..|+|++..+.||+++ ....+|+.+..|+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~-~~~~~g~~~~~~gg 253 (257)
T PRK12744 202 GAEAVAYHKTAAALSPFSKTGLTDIEDIVPFIRFLVTD-GWWITGQTILINGG 253 (257)
T ss_pred ccchhhcccccccccccccCCCCCHHHHHHHHHHhhcc-cceeecceEeecCC
Confidence 1110000 0 000111112678999999999999995 45689999988875
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-32 Score=243.82 Aligned_cols=235 Identities=20% Similarity=0.204 Sum_probs=193.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+|||||++|||+++++.|+++|+ +|++++|+ .+..+...+++...+.++.++.+|+++.+++.++++++.+.++++|+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~ 79 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF-EICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYG 79 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 58999999999999999999996 78777764 45566666666655678999999999999999999999888899999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHH-HHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~-~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+|..... .+.+.+.++|+.++++|+.+++.+++.++ |.+.++. .++||++||..+..
T Consensus 80 li~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~vsS~~~~~--------------- 141 (239)
T TIGR01831 80 VVLNAGITRDA-AFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQ--GGRIITLASVSGVM--------------- 141 (239)
T ss_pred EEECCCCCCCC-chhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC--CeEEEEEcchhhcc---------------
Confidence 99999987543 45567889999999999999999999875 4444333 37999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.+++..|+.+|+++.++++.++.++ .+.||++++|+||+++|++... ... ....
T Consensus 142 --------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~---~~~~ 196 (239)
T TIGR01831 142 --------------------GNRGQVNYSAAKAGLIGATKALAVEL-AKRKITVNCIAPGLIDTEMLAE-VEH---DLDE 196 (239)
T ss_pred --------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEEccCccccchh-hhH---HHHH
Confidence 44567789999999999999999999 7779999999999999986543 211 1112
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.....+..++.+|+|+++.++||+++++..++|..+..||.
T Consensus 197 ~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~gg 237 (239)
T TIGR01831 197 ALKTVPMNRMGQPAEVASLAGFLMSDGASYVTRQVISVNGG 237 (239)
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 23334556778999999999999999888899999999885
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-31 Score=242.19 Aligned_cols=240 Identities=20% Similarity=0.188 Sum_probs=196.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+|+||++++++|+++|+ .|++.+|+.++++.....+ +.++.++.+|+++.++++++++++.+.+
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAEL---GERVKIFPANLSDRDEVKALGQKAEADL 78 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999994 9999999877766655443 3468899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|+.++++|+.+++.+++++.+.+.++. .++||++||..+..
T Consensus 79 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 144 (245)
T PRK12936 79 EGVDILVNNAGITKD-GLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRR--YGRIINITSVVGVT----------- 144 (245)
T ss_pred CCCCEEEECCCCCCC-CccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhC--CCEEEEECCHHhCc-----------
Confidence 999999999998654 3455678899999999999999999999999886654 37999999987764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||+++|++... ..+...
T Consensus 145 ------------------------~~~~~~~Y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~-~~~~~~ 198 (245)
T PRK12936 145 ------------------------GNPGQANYCASKAGMIGFSKSLAQEI-ATRNVTVNCVAPGFIESAMTGK-LNDKQK 198 (245)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcCcCchhcc-cChHHH
Confidence 33556789999999999999999998 7789999999999999975432 111110
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+..++.+|+++++.+.+++++....++|+.+..|++.
T Consensus 199 --~~~~~~~~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12936 199 --EAIMGAIPMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGGM 242 (245)
T ss_pred --HHHhcCCCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCCc
Confidence 01111233445778999999999999887777899999988864
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=243.01 Aligned_cols=241 Identities=20% Similarity=0.249 Sum_probs=195.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|+++||||+||||.+++++|+++|+ .|++.. |+....+...+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGA-KVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999995 776654 4555666666666555667999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.+++.+++|+.+++.++++++|.+.++. .++||++||..+..
T Consensus 82 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 148 (247)
T PRK12935 82 FGKVDILVNNAGITRD-RTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAE--EGRIISISSIIGQA---------- 148 (247)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchhhcC----------
Confidence 9999999999998754 3455778899999999999999999999999997654 37999999987764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||+++.++++.++.++ .+.||+++.|+||++.|++... ...
T Consensus 149 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~-~~~-- 199 (247)
T PRK12935 149 -------------------------GGFGQTNYSAAKAGMLGFTKSLALEL-AKTNVTVNAICPGFIDTEMVAE-VPE-- 199 (247)
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEeCCCcChhhhh-ccH--
Confidence 33466789999999999999999998 6789999999999999975432 111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
............+.+..|+|+++++++++... ...+|+.+..++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~edva~~~~~~~~~~-~~~~g~~~~i~~g 244 (247)
T PRK12935 200 EVRQKIVAKIPKKRFGQADEIAKGVVYLCRDG-AYITGQQLNINGG 244 (247)
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHcCcc-cCccCCEEEeCCC
Confidence 00111112233455789999999999999753 4688999988875
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=246.66 Aligned_cols=246 Identities=16% Similarity=0.106 Sum_probs=200.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||+|+||+++++.|+++|+ +|++++|+.+..+...+.+... ..++.++++|+++++++.++++++.+
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 82 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATA 82 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 47889999999999999999999999995 9999999987766665555433 35788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||+|.......+.+.+.++|+.++++|+.+++.+++++++.|.+.+ .++||++||..+..
T Consensus 83 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~~sS~~~~~--------- 151 (276)
T PRK05875 83 WHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGG--GGSFVGISSIAASN--------- 151 (276)
T ss_pred HcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcC---------
Confidence 9999999999999764334555678899999999999999999999999998764 37999999988753
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.+|++++.+++.++.++ ...+|++++|+||+++|++.......
T Consensus 152 --------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~- 203 (276)
T PRK05875 152 --------------------------THRWFGAYGVTKSAVDHLMKLAADEL-GPSWVRVNSIRPGLIRTDLVAPITES- 203 (276)
T ss_pred --------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCccCCccccccccC-
Confidence 33556789999999999999999999 77899999999999999865321110
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+..++.+++|+++++++|++.+....+|+++..+++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 251 (276)
T PRK05875 204 PELSADYRACTPLPRVGEVEDVANLAMFLLSDAASWITGQVINVDGGH 251 (276)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCCe
Confidence 000011111223345678999999999999988777899999998864
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=240.74 Aligned_cols=243 Identities=21% Similarity=0.189 Sum_probs=200.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++.+|++|||||+|+||+++++.|+++|+ .|+++ +|++...+.....+...+.++.++.+|+++.+++.++++.+.+.
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999995 88888 99887776666666555567899999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ....+.+.++++..+++|+.+++.+++.+++.+.+++ .+++|++||..+..
T Consensus 81 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------- 147 (247)
T PRK05565 81 FGKIDILVNNAGISNF-GLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRK--SGVIVNISSIWGLI---------- 147 (247)
T ss_pred hCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCHhhcc----------
Confidence 8899999999998733 4555778899999999999999999999999998764 37899999987764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+....|+.+|+++..+++.++.++ ...||++++|+||+++|+..........
T Consensus 148 -------------------------~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~gi~~~~v~pg~v~t~~~~~~~~~~~ 201 (247)
T PRK05565 148 -------------------------GASCEVLYSASKGAVNAFTKALAKEL-APSGIRVNAVAPGAIDTEMWSSFSEEDK 201 (247)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCccCccccccChHHH
Confidence 33456689999999999999999998 6789999999999999975433211111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ......+..++.+++++++.++++++..+...+|+++.+|++.
T Consensus 202 ~---~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~~ 245 (247)
T PRK05565 202 E---GLAEEIPLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGGW 245 (247)
T ss_pred H---HHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCCc
Confidence 1 1111223345679999999999999998888999999999864
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-31 Score=245.56 Aligned_cols=217 Identities=24% Similarity=0.244 Sum_probs=186.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++++++|||||+||||++++++|+++|+ +|++++|+.+.++...+.+. ++.++.+|+++.+++.++++++.+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELG----LVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc----cceEEEccCCCHHHHHHHHHHHHHHc
Confidence 57889999999999999999999999995 89999999877776665553 57889999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|++|||||.... ..+.+.+.+.+++++++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 77 ~~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 142 (273)
T PRK07825 77 GPIDVLVNNAGVMPV-GPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG--RGHVVNVASLAGKI----------- 142 (273)
T ss_pred CCCCEEEECCCcCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCEEEEEcCccccC-----------
Confidence 999999999998754 3566778899999999999999999999999998875 38999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.||+++..|++.++.++ .+.||++++|+||++.|++..... .
T Consensus 143 ------------------------~~~~~~~Y~asKaa~~~~~~~l~~el-~~~gi~v~~v~Pg~v~t~~~~~~~-~--- 193 (273)
T PRK07825 143 ------------------------PVPGMATYCASKHAVVGFTDAARLEL-RGTGVHVSVVLPSFVNTELIAGTG-G--- 193 (273)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCcCcchhhcccc-c---
Confidence 45678899999999999999999998 778999999999999998543210 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.....+++|+++|+.+++++.++..
T Consensus 194 --------~~~~~~~~~~~va~~~~~~l~~~~~ 218 (273)
T PRK07825 194 --------AKGFKNVEPEDVAAAIVGTVAKPRP 218 (273)
T ss_pred --------ccCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0112467999999999999987543
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=242.37 Aligned_cols=237 Identities=21% Similarity=0.196 Sum_probs=192.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+|++|||||+|+||++++++|+++| +.|++++|+.+.++...+.+ +.++.++++|+++.+++.++++.+.+.+++
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERG-DRVVATARDTATLADLAEKY---GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHhc---cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999 58999999987766554443 346888999999999999999999988899
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|.+++.+ .++||++||..+..
T Consensus 78 ~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~------------- 141 (275)
T PRK08263 78 LDIVVNNAGYGLF-GMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQR--SGHIIQISSIGGIS------------- 141 (275)
T ss_pred CCEEEECCCCccc-cccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhcC-------------
Confidence 9999999998754 4566788999999999999999999999999998765 37999999988764
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-----h
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-----P 278 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-----~ 278 (358)
+.++...|+.+|++++.+++.++.++ .+.||+++.|+||++.|++...... .
T Consensus 142 ----------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~ 198 (275)
T PRK08263 142 ----------------------AFPMSGIYHASKWALEGMSEALAQEV-AEFGIKVTLVEPGGYSTDWAGTSAKRATPLD 198 (275)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCccCCccccccccCCCch
Confidence 44567789999999999999999998 7789999999999999986632111 1
Q ss_pred hhhhh-cchhHHhhhcCc-cchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 LFRLL-FPPFQKYITKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~~~~~-~~~~~~~~~~~~-~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..... .......+...+ .+|+++++.++++++.+.. .++|+.-.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~p~dva~~~~~l~~~~~~--~~~~~~~~~ 245 (275)
T PRK08263 199 AYDTLREELAEQWSERSVDGDPEAAAEALLKLVDAENP--PLRLFLGSG 245 (275)
T ss_pred hhhhHHHHHHHHHHhccCCCCHHHHHHHHHHHHcCCCC--CeEEEeCch
Confidence 11111 111222333455 7999999999999987644 777886554
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=244.00 Aligned_cols=239 Identities=15% Similarity=0.139 Sum_probs=182.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcC-CCCceEEEEecCCCHHHH----HHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGM-AKENYTIMHLDLASLDSV----RQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i----~~~~~~~~~ 119 (358)
++++||||++|||++++++|+++|+ .|++++| +.+.++...+++.. .+.++.++.+|+++.+++ +++++++.+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~ 80 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGY-RVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFR 80 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCC-eEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHH
Confidence 5899999999999999999999995 8877654 45566666666643 245677899999999865 555666667
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCH-----------HhHHhhhhhhhhHHHHHHHHHHHHHhcCC----CCCCeEEEEe
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVG 184 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~~~~~l~~~~----~~~g~iv~vs 184 (358)
.++++|+||||||..... .+.+.+. +.|.+++++|+.+++.++++++|.|+... ...++||+++
T Consensus 81 ~~g~iD~lv~nAG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~ 159 (267)
T TIGR02685 81 AFGRCDVLVNNASAFYPT-PLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLC 159 (267)
T ss_pred ccCCceEEEECCccCCCC-cccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEeh
Confidence 788999999999986432 2222222 35889999999999999999999986532 1136899999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecC
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 264 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~P 264 (358)
|..+.. +.+++..|+.||+++++|+++++.|+ .+.||+|++|+|
T Consensus 160 s~~~~~-----------------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~P 203 (267)
T TIGR02685 160 DAMTDQ-----------------------------------PLLGFTMYTMAKHALEGLTRSAALEL-APLQIRVNGVAP 203 (267)
T ss_pred hhhccC-----------------------------------CCcccchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEec
Confidence 987653 45677899999999999999999999 778999999999
Q ss_pred CcccCCcccccchhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 265 GCIATTGLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 265 G~v~t~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|++.|+...... ... ......+. .++.+|+++++.+++++++....++|+++.+|+..
T Consensus 204 G~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (267)
T TIGR02685 204 GLSLLPDAMPFE--VQE---DYRRKVPLGQREASAEQIADVVIFLVSPKAKYITGTCIKVDGGL 262 (267)
T ss_pred CCccCccccchh--HHH---HHHHhCCCCcCCCCHHHHHHHHHHHhCcccCCcccceEEECCce
Confidence 999876221110 000 01111122 24679999999999999988888999999999863
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=241.19 Aligned_cols=243 Identities=22% Similarity=0.221 Sum_probs=193.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++++++||||+|+||++++++|+++|+ .|++ ..|+....+.....+...+.++.++.+|+++.+++.++++++.+
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~ 80 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGA-LVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKN 80 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999999995 7766 57887766666666654456788999999999999999999987
Q ss_pred cC------CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 120 SG------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 120 ~~------~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
.+ +++|++|||||.... ..+.+.+.+.|+.++++|+.+++.+++++++.+.+. +++|++||..+..
T Consensus 81 ~~~~~~~~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~~v~~sS~~~~~--- 152 (254)
T PRK12746 81 ELQIRVGTSEIDILVNNAGIGTQ-GTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAE----GRVINISSAEVRL--- 152 (254)
T ss_pred HhccccCCCCccEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC----CEEEEECCHHhcC---
Confidence 65 479999999998644 355677889999999999999999999999998653 6999999987763
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.+++..|+.||++++.+++++++++ .+.|+++++|+||++.|++..
T Consensus 153 --------------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~ 199 (254)
T PRK12746 153 --------------------------------GFTGSIAYGLSKGALNTMTLPLAKHL-GERGITVNTIMPGYTKTDINA 199 (254)
T ss_pred --------------------------------CCCCCcchHhhHHHHHHHHHHHHHHH-hhcCcEEEEEEECCccCcchh
Confidence 44567789999999999999999998 677999999999999998543
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... ..............+...++|+++.+.++++++....+|+.+..++.
T Consensus 200 ~~~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~i~~~ 251 (254)
T PRK12746 200 KLLDD-PEIRNFATNSSVFGRIGQVEDIADAVAFLASSDSRWVTGQIIDVSGG 251 (254)
T ss_pred hhccC-hhHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCcCCCEEEeCCC
Confidence 21110 00000011111224567999999999999988766678988888765
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-31 Score=237.16 Aligned_cols=239 Identities=21% Similarity=0.271 Sum_probs=196.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|++|||||+++||++++++|+++|+ +|+++.| +....+....++...+.++.++.+|+++.+++.++++++.+.++++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPI 79 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 6899999999999999999999995 8888777 5555555555554445678999999999999999999999988999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.... ..+.+.+.+.+++.+++|+.+++.+++.+++.+.+.+ .++||++||..+..
T Consensus 80 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~iss~~~~~-------------- 142 (242)
T TIGR01829 80 DVLVNNAGITRD-ATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERG--WGRIINISSVNGQK-------------- 142 (242)
T ss_pred cEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcC--------------
Confidence 999999998644 3455778899999999999999999999999998764 37999999987663
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.+++..|+.+|+++..+++.+++++ .+.||++++++||++.|++...-... ...
T Consensus 143 ---------------------~~~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~---~~~ 197 (242)
T TIGR01829 143 ---------------------GQFGQTNYSAAKAGMIGFTKALAQEG-ATKGVTVNTISPGYIATDMVMAMRED---VLN 197 (242)
T ss_pred ---------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCCCcCccccccchH---HHH
Confidence 34567789999999999999999998 77899999999999999854321111 111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+..++.+|+++++.+.++++++...++|+.+.+|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg~ 240 (242)
T TIGR01829 198 SIVAQIPVGRLGRPEEIAAAVAFLASEEAGYITGATLSINGGL 240 (242)
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEecCCc
Confidence 1112234456789999999999999988878999999999864
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-31 Score=237.27 Aligned_cols=239 Identities=20% Similarity=0.244 Sum_probs=194.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|++|||||+++||++++++|+++| .+|++++|+.. ..+.....+...+.++.++.+|+++.+++.++++++.+.++++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g-~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDG-YRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcC-CEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 589999999999999999999999 59999999853 2233333333345678999999999999999999999989999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.... ..+.+.+.+.|++++++|+.+++.+++.+++.+++.. .++||++||..+..
T Consensus 82 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~iss~~~~~-------------- 144 (245)
T PRK12824 82 DILVNNAGITRD-SVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQG--YGRIINISSVNGLK-------------- 144 (245)
T ss_pred CEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--CeEEEEECChhhcc--------------
Confidence 999999998754 3455778999999999999999999999999998654 47999999988763
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.+|++++++++.++.++ .+.||++++++||++.|++..... + ....
T Consensus 145 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~-~--~~~~ 199 (245)
T PRK12824 145 ---------------------GQFGQTNYSAAKAGMIGFTKALASEG-ARYGITVNCIAPGYIATPMVEQMG-P--EVLQ 199 (245)
T ss_pred ---------------------CCCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEEcccCCcchhhcC-H--HHHH
Confidence 44567789999999999999999998 778999999999999998543211 1 1111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+.....+++++++.+.+|+++....++|+.+..|+..
T Consensus 200 ~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~~~~g~ 242 (245)
T PRK12824 200 SIVNQIPMKRLGTPEEIAAAVAFLVSEAAGFITGETISINGGL 242 (245)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEECCCe
Confidence 1112223445679999999999999887778999999999864
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=267.93 Aligned_cols=233 Identities=20% Similarity=0.228 Sum_probs=193.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..++++++|||||+||||++++++|+++|+ +|++++|+.++++...+.+...+.++.++.+|+++.+++.++++++.+.
T Consensus 311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 389 (582)
T PRK05855 311 GPFSGKLVVVTGAGSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAE 389 (582)
T ss_pred ccCCCCEEEEECCcCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999995 8999999988888877777666678899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++++++|+.|++.++++++|.|.+++. +|+||++||..+..
T Consensus 390 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~---------- 457 (582)
T PRK05855 390 HGVPDIVVNNAGIGMA-GGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGT-GGHIVNVASAAAYA---------- 457 (582)
T ss_pred cCCCcEEEECCccCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhhcc----------
Confidence 9999999999998754 35667889999999999999999999999999987642 37999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+|++|+||+|+|++......+..
T Consensus 458 -------------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 511 (582)
T PRK05855 458 -------------------------PSRSLPAYATSKAAVLMLSECLRAEL-AAAGIGVTAICPGFVDTNIVATTRFAGA 511 (582)
T ss_pred -------------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCCCcccchhccccCCc
Confidence 44677899999999999999999999 7789999999999999986544221100
Q ss_pred h-----hhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 281 R-----LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~-----~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
. ............+..+|+++|+.+++++...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~p~~va~~~~~~~~~~ 548 (582)
T PRK05855 512 DAEDEARRRGRADKLYQRRGYGPEKVAKAIVDAVKRN 548 (582)
T ss_pred ccchhhhHHhhhhhhccccCCCHHHHHHHHHHHHHcC
Confidence 0 0001111222234568999999999999764
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=236.96 Aligned_cols=241 Identities=20% Similarity=0.209 Sum_probs=195.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++++++|||||+||||+++++.|+++|+ +|++++|+..+++...+++...+.++.++++|+++.++++++++.+.+.+
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 89999999877777766666556788999999999999999999998888
Q ss_pred CCccEEEEcccccCCCC-------C-CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 122 RPLDVLVCNAAVYLPTA-------K-EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~-------~-~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
+++|+||||+|...... . ..+.+.+.++.++++|+.+++.+.+.+++.+.+... +++||++||....
T Consensus 81 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~-~~~iv~~ss~~~~---- 155 (253)
T PRK08217 81 GQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGS-KGVIINISSIARA---- 155 (253)
T ss_pred CCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CeEEEEEcccccc----
Confidence 89999999999754211 1 146688999999999999999999999999976532 4789999886533
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||++++.++++++.++ .+.||++++++||++.|++..
T Consensus 156 --------------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~pg~v~t~~~~ 202 (253)
T PRK08217 156 --------------------------------GNMGQTNYSASKAGVAAMTVTWAKEL-ARYGIRVAAIAPGVIETEMTA 202 (253)
T ss_pred --------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCcccc
Confidence 33467789999999999999999998 778999999999999998553
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ..+.. ........+.+.+.+++++++.+.+++++ ...+|+.+.+|+.
T Consensus 203 ~-~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--~~~~g~~~~~~gg 250 (253)
T PRK08217 203 A-MKPEA--LERLEKMIPVGRLGEPEEIAHTVRFIIEN--DYVTGRVLEIDGG 250 (253)
T ss_pred c-cCHHH--HHHHHhcCCcCCCcCHHHHHHHHHHHHcC--CCcCCcEEEeCCC
Confidence 2 11111 11111222345577999999999999964 3579999999885
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=238.45 Aligned_cols=237 Identities=17% Similarity=0.167 Sum_probs=188.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..+|++|||||++|||++++++|+++|+ +|+++.+ +.+.++...+.+...+.++.++.+|+++.+++.++++++.+.+
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 85 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAAL 85 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999995 7766655 4555555666655556678999999999999999999998888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.+.|++++++|+.+++.+++++++.+.++. .++||+++|..+..
T Consensus 86 ~~iD~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~~s~~~~~----------- 151 (258)
T PRK09134 86 GPITLLVNNASLFEY-DSAASFTRASWDRHMATNLRAPFVLAQAFARALPADA--RGLVVNMIDQRVWN----------- 151 (258)
T ss_pred CCCCEEEECCcCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECchhhcC-----------
Confidence 999999999998654 3456778899999999999999999999999988754 37999998876542
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+.+..|+.||++++++++.+++++ .+ +|+|++|+||++.|+.. .....+
T Consensus 152 ------------------------~~p~~~~Y~~sK~a~~~~~~~la~~~-~~-~i~v~~i~PG~v~t~~~-~~~~~~-- 202 (258)
T PRK09134 152 ------------------------LNPDFLSYTLSKAALWTATRTLAQAL-AP-RIRVNAIGPGPTLPSGR-QSPEDF-- 202 (258)
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cC-CcEEEEeecccccCCcc-cChHHH--
Confidence 33456689999999999999999998 44 49999999999988632 111111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+..+..+|+|+|++++++++.+ ..+|+++..++..
T Consensus 203 --~~~~~~~~~~~~~~~~d~a~~~~~~~~~~--~~~g~~~~i~gg~ 244 (258)
T PRK09134 203 --ARQHAATPLGRGSTPEEIAAAVRYLLDAP--SVTGQMIAVDGGQ 244 (258)
T ss_pred --HHHHhcCCCCCCcCHHHHHHHHHHHhcCC--CcCCCEEEECCCe
Confidence 11111223345679999999999999864 4699999988864
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-31 Score=236.71 Aligned_cols=212 Identities=17% Similarity=0.120 Sum_probs=174.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+++||||++|||+++++.|+++|+ +|++++|+.++++...+.+ ++.++++|+++.++++++++++.. ++|+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~---~id~ 72 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKEL-----DVDAIVCDNTDPASLEEARGLFPH---HLDT 72 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc-----cCcEEecCCCCHHHHHHHHHHHhh---cCcE
Confidence 489999999999999999999995 9999999987776665543 356889999999999999887653 6999
Q ss_pred EEEcccccCC---C--CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 127 LVCNAAVYLP---T--AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 127 lv~~ag~~~~---~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
||||+|.... . ..+.+ +.++|++++++|+.+++.++++++|.|.+ +|+||++||...
T Consensus 73 lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~----~g~Iv~isS~~~------------- 134 (223)
T PRK05884 73 IVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS----GGSIISVVPENP------------- 134 (223)
T ss_pred EEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCeEEEEecCCC-------------
Confidence 9999985321 1 12223 46899999999999999999999999975 279999998652
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+....|+.||+|+.+|++.++.|+ .++||+||+|+||+++|++....
T Consensus 135 --------------------------~~~~~Y~asKaal~~~~~~la~e~-~~~gI~v~~v~PG~v~t~~~~~~------ 181 (223)
T PRK05884 135 --------------------------PAGSAEAAIKAALSNWTAGQAAVF-GTRGITINAVACGRSVQPGYDGL------ 181 (223)
T ss_pred --------------------------CCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccCchhhhhc------
Confidence 234689999999999999999999 77899999999999999743110
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...+ ..+|+|+++.+.||+++.+..++|+.+..||..
T Consensus 182 ------~~~p---~~~~~~ia~~~~~l~s~~~~~v~G~~i~vdgg~ 218 (223)
T PRK05884 182 ------SRTP---PPVAAEIARLALFLTTPAARHITGQTLHVSHGA 218 (223)
T ss_pred ------cCCC---CCCHHHHHHHHHHHcCchhhccCCcEEEeCCCe
Confidence 0011 138999999999999998888999999999865
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-31 Score=239.30 Aligned_cols=240 Identities=18% Similarity=0.237 Sum_probs=194.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||+|+||++++++|+++|+ +|++++|+..+++...+.+. +.++.++++|+.+.+++..+++++.+.++++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALG--DARFVPVACDLTDAASLAAALANAAAERGPV 78 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57999999999999999999999995 99999999877776666553 3568899999999999999999999888999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|++|||+|..... .+.+.+.+.|+..+++|+.+++.+.+++++.+.+++ .++||++||..+..
T Consensus 79 d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 141 (257)
T PRK07074 79 DVLVANAGAARAA-SLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRS--RGAVVNIGSVNGMA-------------- 141 (257)
T ss_pred CEEEECCCCCCCC-ChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcC--------------
Confidence 9999999986543 455678899999999999999999999999988764 37999999976542
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+ .+...|+.+|+++..+++++++++ .+.||+|++++||++.|++.............
T Consensus 142 ---------------------~-~~~~~y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~ 198 (257)
T PRK07074 142 ---------------------A-LGHPAYSAAKAGLIHYTKLLAVEY-GRFGIRANAVAPGTVKTQAWEARVAANPQVFE 198 (257)
T ss_pred ---------------------C-CCCcccHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCCcchhhcccccChHHHH
Confidence 1 234579999999999999999999 77899999999999999864321111001101
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+...+..++|+++++++|+++....++|+++.+|+..
T Consensus 199 ~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~ 241 (257)
T PRK07074 199 ELKKWYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGL 241 (257)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCc
Confidence 1111223456789999999999999877777899999888864
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.9e-31 Score=241.15 Aligned_cols=226 Identities=19% Similarity=0.192 Sum_probs=188.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++++||||+||||++++++|+++|+ .|++++|+.+.++.....+...+.++.++++|+++.+++.++++.+.+.++++|
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id 79 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGID 79 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4799999999999999999999994 999999998888887777766677899999999999999999999999889999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... ..+.+.+.++|++++++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 80 ~lI~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~vsS~~~~~--------------- 141 (270)
T PRK05650 80 VIVNNAGVASG-GFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK--SGRIVNIASMAGLM--------------- 141 (270)
T ss_pred EEEECCCCCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcC---------------
Confidence 99999998754 3566778899999999999999999999999998764 37999999998763
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.++...|+.+|+++.+|+++++.++ .+.||++++|+||+++|++....... ......
T Consensus 142 --------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~-~~~~~~ 199 (270)
T PRK05650 142 --------------------QGPAMSSYNVAKAGVVALSETLLVEL-ADDEIGVHVVCPSFFQTNLLDSFRGP-NPAMKA 199 (270)
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccccCcccccccC-chhHHH
Confidence 45677899999999999999999999 77899999999999999854331111 111111
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
...........+++++|+.++.++...
T Consensus 200 ~~~~~~~~~~~~~~~vA~~i~~~l~~~ 226 (270)
T PRK05650 200 QVGKLLEKSPITAADIADYIYQQVAKG 226 (270)
T ss_pred HHHHHhhcCCCCHHHHHHHHHHHHhCC
Confidence 122222234679999999999999754
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=7e-31 Score=238.98 Aligned_cols=240 Identities=18% Similarity=0.107 Sum_probs=192.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++||||++|||++++++|+++|+ +|++++|+ .+.++...+.+.... ..+..+++|+++.++++++++++.+.++++
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGA-KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 89999999999999999999994 99999998 555666655554332 235668899999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... ..+.+.+.+++++++++|+.+++.+++.+++.|.++. .++||++||..+..
T Consensus 81 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~ii~~ss~~~~~-------------- 143 (251)
T PRK07069 81 SVLVNNAGVGSF-GAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQ--PASIVNISSVAAFK-------------- 143 (251)
T ss_pred cEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEecChhhcc--------------
Confidence 999999998754 3556778899999999999999999999999998764 37999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccchhh--hh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPL--FR 281 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~~~--~~ 281 (358)
+.+++..|+.+|+++..++++++.++.. ..+|++++|+||+++|++........ ..
T Consensus 144 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~ 202 (251)
T PRK07069 144 ---------------------AEPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIVDPIFQRLGEEE 202 (251)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcchhHHhhhccchh
Confidence 3456778999999999999999999832 23599999999999998654311100 00
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+..++.+|+++++.+++|++++....+|+.+..|+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~~g 247 (251)
T PRK07069 203 ATRKLARGVPLGRLGEPDDVAHAVLYLASDESRFVTGAELVIDGG 247 (251)
T ss_pred HHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 001111122334567999999999999998888899999988875
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.1e-30 Score=239.04 Aligned_cols=215 Identities=21% Similarity=0.263 Sum_probs=181.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+ ++.++.+|+++.+++.++++++.++++++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~g~i 79 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA-RVSVYAADVRDADALAAAAADFIAAHGLP 79 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC-eeEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999995 99999999877777666665433 78999999999999999999999988999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.........+.+.+.++.++++|+.|++.++++++|.|.+++ .++||++||..+..
T Consensus 80 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~--~~~iv~isS~~~~~-------------- 143 (257)
T PRK07024 80 DVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAAR--RGTLVGIASVAGVR-------------- 143 (257)
T ss_pred CEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcC--------------
Confidence 99999999865433333367899999999999999999999999998765 48999999998774
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.+....|+.||++++.|+++++.|+ .+.||++++|+||++.|++......
T Consensus 144 ---------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~------- 194 (257)
T PRK07024 144 ---------------------GLPGAGAYSASKAAAIKYLESLRVEL-RPAGVRVVTIAPGYIRTPMTAHNPY------- 194 (257)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCcCchhhcCCC-------
Confidence 44667789999999999999999998 7789999999999999985432110
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
......+|+++++.++.++...
T Consensus 195 ------~~~~~~~~~~~a~~~~~~l~~~ 216 (257)
T PRK07024 195 ------PMPFLMDADRFAARAARAIARG 216 (257)
T ss_pred ------CCCCccCHHHHHHHHHHHHhCC
Confidence 0012368999999999999653
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=238.06 Aligned_cols=244 Identities=20% Similarity=0.222 Sum_probs=194.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|++|||||+|+||+++++.|+++|+ .|++++|+. ...+...+.++..+.++.++.+|+++.+++.++++++.+.+++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGR 80 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 37899999999999999999999995 888888764 3444444555444567899999999999999999999999999
Q ss_pred ccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCC----CCeEEEEecCCCCCCCcCCCCC
Q 018331 124 LDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 124 iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~----~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+|+||||+|.... ...+.+.+.+.|++.+++|+.+++.+++++.+.|.++... .++||++||..+..
T Consensus 81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-------- 152 (256)
T PRK12745 81 IDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIM-------- 152 (256)
T ss_pred CCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhcc--------
Confidence 9999999998632 2345567889999999999999999999999999865421 35799999988764
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||++++++++.++.++ .+.||++++|+||.+.|++.......
T Consensus 153 ---------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~~~~~ 204 (256)
T PRK12745 153 ---------------------------VSPNRGEYCISKAGLSMAAQLFAARL-AEEGIGVYEVRPGLIKTDMTAPVTAK 204 (256)
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecCCCcCccccccchh
Confidence 34566789999999999999999998 67899999999999999754322111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....... ...+...+..|+++++++.+++.......+|.++..|+..
T Consensus 205 ~~~~~~~--~~~~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg~ 251 (256)
T PRK12745 205 YDALIAK--GLVPMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGGL 251 (256)
T ss_pred HHhhhhh--cCCCcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCCe
Confidence 1111100 0123345678999999999999877667899999999864
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=240.76 Aligned_cols=223 Identities=23% Similarity=0.232 Sum_probs=180.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|+++||||+||||++++++|+++| ++|++++|+.++++.... .++.++++|+++.++++++++++.+.+++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~l~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQG-YTVYGAARRVDKMEDLAS------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHh------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999999999999999 599999999876654322 24789999999999999999999998999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.++++..+++|+.+++.+++.++|.|++++ .++||++||..+..
T Consensus 75 id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~------------- 138 (273)
T PRK06182 75 IDVLVNNAGYGSY-GAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQR--SGRIINISSMGGKI------------- 138 (273)
T ss_pred CCEEEECCCcCCC-CchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhcC-------------
Confidence 9999999998644 3566788999999999999999999999999998765 37999999987653
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh---
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF--- 280 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~--- 280 (358)
+.+....|+.||+++++|++.++.|+ .+.||++++|+||+++|++.........
T Consensus 139 ----------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~ 195 (273)
T PRK06182 139 ----------------------YTPLGAWYHATKFALEGFSDALRLEV-APFGIDVVVIEPGGIKTEWGDIAADHLLKTS 195 (273)
T ss_pred ----------------------CCCCccHhHHHHHHHHHHHHHHHHHh-cccCCEEEEEecCCcccccchhhhhhhcccc
Confidence 23445579999999999999999998 7789999999999999985421110000
Q ss_pred -----hh----hcchh-HHhhhcCccchhHHhhhhhhhhcCC
Q 018331 281 -----RL----LFPPF-QKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 -----~~----~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.. ....+ ...+..++.+|+++|+.++++++..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~i~~~~~~~ 237 (273)
T PRK06182 196 GNGAYAEQAQAVAASMRSTYGSGRLSDPSVIADAISKAVTAR 237 (273)
T ss_pred cccchHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHhCC
Confidence 00 00011 1112345779999999999999853
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=236.23 Aligned_cols=223 Identities=19% Similarity=0.204 Sum_probs=187.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|++|||||+|+||++++++|+++|+ .|++++|+.++.+...+.+...+.++.++.+|+++.+++.++++++.+.+++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 468999999999999999999999995 9999999987777766666555568899999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||+|.... ..+.+.+.++++.++++|+.+++.+++.+++++.++. .++||++||..+..
T Consensus 84 id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 147 (241)
T PRK07454 84 PDVLINNAGMAYT-GPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG--GGLIINVSSIAARN------------- 147 (241)
T ss_pred CCEEEECCCccCC-CchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCc-------------
Confidence 9999999998644 3455678899999999999999999999999998764 37999999987763
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.+++..|+.+|++++.+++.++.++ .+.||++++|+||+++|++.......
T Consensus 148 ----------------------~~~~~~~Y~~sK~~~~~~~~~~a~e~-~~~gi~v~~i~pg~i~t~~~~~~~~~----- 199 (241)
T PRK07454 148 ----------------------AFPQWGAYCVSKAALAAFTKCLAEEE-RSHGIRVCTITLGAVNTPLWDTETVQ----- 199 (241)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCcccCCcccccccc-----
Confidence 44567789999999999999999998 77799999999999999864321100
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 315 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~ 315 (358)
.. ....++.+|+++|+.++++++.+...
T Consensus 200 -~~---~~~~~~~~~~~va~~~~~l~~~~~~~ 227 (241)
T PRK07454 200 -AD---FDRSAMLSPEQVAQTILHLAQLPPSA 227 (241)
T ss_pred -cc---cccccCCCHHHHHHHHHHHHcCCccc
Confidence 00 11124679999999999999987554
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-30 Score=235.12 Aligned_cols=240 Identities=23% Similarity=0.251 Sum_probs=193.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec----ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR----DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r----~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++++++++||||+|+||+++++.|+++|+ .|++++| +.+..+....++...+.++.++.+|+++.++++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAG 81 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHH
Confidence 46789999999999999999999999995 8887654 344444455555555668899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHH-HHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL-DDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~-~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.+.++++|+||||+|.... ..+.+.+.++|++.+++|+.+++.+++++. +.+.+.. .+++|++||..+..
T Consensus 82 ~~~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~--~~~iv~~sS~~~~~------ 152 (249)
T PRK12827 82 VEEFGRLDILVNNAGIATD-AAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARR--GGRIVNIASVAGVR------ 152 (249)
T ss_pred HHHhCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC--CeEEEEECCchhcC------
Confidence 8888899999999998754 355677889999999999999999999999 5665543 37999999988764
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.+++..|+.+|+++..+++.++.++ .+.||++++|+||+++|++.....
T Consensus 153 -----------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~ 202 (249)
T PRK12827 153 -----------------------------GNRGQVNYAASKAGLIGLTKTLANEL-APRGITVNAVAPGAINTPMADNAA 202 (249)
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEECCcCCCcccccc
Confidence 34567789999999999999999998 777999999999999998543322
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+. . ......+.....+++++++.+++++.+.....+|+++.+|++
T Consensus 203 -~~-~---~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 203 -PT-E---HLLNPVPVQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred -hH-H---HHHhhCCCcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 10 0 111122223455999999999999988777789999999875
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-31 Score=248.34 Aligned_cols=215 Identities=17% Similarity=0.143 Sum_probs=172.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|++++|||||+|||+++|++|+++|+ +|++++|+.++++...+++... +.++.++.+|+++ ++.+.++++.+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~l~~~~ 128 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG--DIDEGVKRIKETI 128 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC--CcHHHHHHHHHHh
Confidence 589999999999999999999999995 9999999998888887777543 3467889999985 2233334443333
Q ss_pred C--CccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 122 R--PLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 122 ~--~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+ ++|+||||||.... ...+.+.+.+++++++++|+.|++.++++++|.|.+++ .|+||++||..+...
T Consensus 129 ~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~a~~~~------- 199 (320)
T PLN02780 129 EGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK--KGAIINIGSGAAIVI------- 199 (320)
T ss_pred cCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CcEEEEEechhhccC-------
Confidence 3 46799999998643 23566788999999999999999999999999998765 489999999887520
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
.+.++...|+.||+++..|+++|+.|+ .+.||+|++|+||+|+|++......
T Consensus 200 --------------------------~~~p~~~~Y~aSKaal~~~~~~L~~El-~~~gI~V~~v~PG~v~T~~~~~~~~- 251 (320)
T PLN02780 200 --------------------------PSDPLYAVYAATKAYIDQFSRCLYVEY-KKSGIDVQCQVPLYVATKMASIRRS- 251 (320)
T ss_pred --------------------------CCCccchHHHHHHHHHHHHHHHHHHHH-hccCeEEEEEeeCceecCcccccCC-
Confidence 023567899999999999999999999 7889999999999999986431110
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
. ....+|+++|+.++..+..
T Consensus 252 ------~-------~~~~~p~~~A~~~~~~~~~ 271 (320)
T PLN02780 252 ------S-------FLVPSSDGYARAALRWVGY 271 (320)
T ss_pred ------C-------CCCCCHHHHHHHHHHHhCC
Confidence 0 0135899999999998853
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-30 Score=238.76 Aligned_cols=228 Identities=19% Similarity=0.216 Sum_probs=183.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+|++|||||+||||++++++|+++|+ +|++++|+.+.++...+. .+.++.++.+|+++.+++.++++.+.+.+++
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEAL---HPDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhh---cCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 468999999999999999999999995 999999998666544332 2357889999999999999999999998999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ....+.+.+.|++++++|+.|++.++++++|+++++. .++||++||..+..
T Consensus 79 ~d~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~iSS~~~~~------------- 142 (277)
T PRK06180 79 IDVLVNNAGYGHE-GAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR--RGHIVNITSMGGLI------------- 142 (277)
T ss_pred CCEEEECCCccCC-cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC--CCEEEEEecccccC-------------
Confidence 9999999998644 3566778899999999999999999999999998765 37999999988764
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch------
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI------ 277 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~------ 277 (358)
+.+++..|+.+|++++.+++.++.++ ...|+++++|+||++.|++......
T Consensus 143 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~~~~~~~~~~ 199 (277)
T PRK06180 143 ----------------------TMPGIGYYCGSKFALEGISESLAKEV-APFGIHVTAVEPGSFRTDWAGRSMVRTPRSI 199 (277)
T ss_pred ----------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCcccCccccccccCCCCc
Confidence 44677899999999999999999998 7789999999999999975322111
Q ss_pred hhhhhhcch----hHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 278 PLFRLLFPP----FQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 278 ~~~~~~~~~----~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
+........ .......++.+|+++++.+++++..+..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~l~~~~~ 240 (277)
T PRK06180 200 ADYDALFGPIRQAREAKSGKQPGDPAKAAQAILAAVESDEP 240 (277)
T ss_pred HhHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHcCCCC
Confidence 101111111 1112234467999999999999987643
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-30 Score=237.19 Aligned_cols=239 Identities=23% Similarity=0.223 Sum_probs=187.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC-
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP- 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~- 123 (358)
|++|||||+||||++++++|+++|+ +|++++|+. +.++...+ ..+.+++++++|+++.++++++++++.+.++.
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~-~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT-HVISISRTENKELTKLAE---QYNSNLTFHSLDLQDVHELETNFNEILSSIQED 77 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC-EEEEEeCCchHHHHHHHh---ccCCceEEEEecCCCHHHHHHHHHHHHHhcCcc
Confidence 6899999999999999999999995 999999986 33333222 23457889999999999999999998776542
Q ss_pred -cc--EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 124 -LD--VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 124 -iD--~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++ ++|+|+|.......+.+.+.+.|++.+++|+.+++.+++.++|++.+... .++||++||..+..
T Consensus 78 ~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 146 (251)
T PRK06924 78 NVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKV-DKRVINISSGAAKN---------- 146 (251)
T ss_pred cCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCC-CceEEEecchhhcC----------
Confidence 22 89999998655456678899999999999999999999999999987431 36999999987652
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCcccccc---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREH--- 276 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~~--- 276 (358)
+.+++..|+.+|++++.+++.++.++. .+.+|+|++|+||+++|++.....
T Consensus 147 -------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~ 201 (251)
T PRK06924 147 -------------------------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSS 201 (251)
T ss_pred -------------------------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHHHHHhcC
Confidence 556788999999999999999999973 356899999999999998643210
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..............+..++.+|+++|+.+++++++. ...+|+++..|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~-~~~~G~~~~v~~ 249 (251)
T PRK06924 202 KEDFTNLDRFITLKEEGKLLSPEYVAKALRNLLETE-DFPNGEVIDIDE 249 (251)
T ss_pred cccchHHHHHHHHhhcCCcCCHHHHHHHHHHHHhcc-cCCCCCEeehhh
Confidence 000011111222224456889999999999999874 568999998775
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-30 Score=235.35 Aligned_cols=232 Identities=22% Similarity=0.213 Sum_probs=193.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCC--CHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLA--SLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~--~~~~i~~~~~~~~ 118 (358)
.+++|++|||||+++||.+++++|+++|+ .|++++|+...++...+++... ..++.++.+|++ +.+++.++++.+.
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999995 9999999987777776666543 346777778875 7899999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.......+.+.+.+.|++.+++|+.+++.++++++++|.++. .++||++||..+..
T Consensus 88 ~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~--~~~iv~~ss~~~~~-------- 157 (247)
T PRK08945 88 EQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSP--AASLVFTSSSVGRQ-------- 157 (247)
T ss_pred HHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC--CCEEEEEccHhhcC--------
Confidence 98899999999999865544566778899999999999999999999999998765 37999999987763
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.+++..|+.||++++.+++.++.++ ...||++++++||++.|++.......
T Consensus 158 ---------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~~~~v~pg~v~t~~~~~~~~~ 209 (247)
T PRK08945 158 ---------------------------GRANWGAYAVSKFATEGMMQVLADEY-QGTNLRVNCINPGGTRTAMRASAFPG 209 (247)
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCCccCcchhhhcCc
Confidence 34566789999999999999999998 77899999999999999743221111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
....++.+|+++++.+++++++++..++|+++..
T Consensus 210 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 243 (247)
T PRK08945 210 -----------EDPQKLKTPEDIMPLYLYLMGDDSRRKNGQSFDA 243 (247)
T ss_pred -----------ccccCCCCHHHHHHHHHHHhCccccccCCeEEeC
Confidence 0123467999999999999998888899998764
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=234.09 Aligned_cols=242 Identities=19% Similarity=0.206 Sum_probs=193.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|++|||||+|+||++++++|+++|+ .|++ ..|+.+..+.....+...+.++.++++|+++.++++++++++.+.++++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY-TVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999999995 7765 5677766666666665555678899999999999999999999889999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
|+||||+|.........+.+.+.|+..+++|+.+++.+++++++.+.++.. .+++||++||..+..
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~------------- 147 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRL------------- 147 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcc-------------
Confidence 999999998644455667788999999999999999999999999876521 237899999987764
Q ss_pred cccccccccCCCCCCCCCCCCCCCch-hhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++ +..|+.+|++++.+++.++.++ .+.||++++++||++.|++......+. .
T Consensus 148 ----------------------~~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~i~pg~~~~~~~~~~~~~~--~ 202 (247)
T PRK09730 148 ----------------------GAPGEYVDYAASKGAIDTLTTGLSLEV-AAQGIRVNCVRPGFIYTEMHASGGEPG--R 202 (247)
T ss_pred ----------------------CCCCcccchHhHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCCCcCcccccCCCHH--H
Confidence 1122 3469999999999999999998 778999999999999998543322111 1
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
........+..+..+++++++.+++++++.....+|+++.+++.
T Consensus 203 ~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g~ 246 (247)
T PRK09730 203 VDRVKSNIPMQRGGQPEEVAQAIVWLLSDKASYVTGSFIDLAGG 246 (247)
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHhhcChhhcCccCcEEecCCC
Confidence 11111122333456899999999999998777799999998873
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-31 Score=221.72 Aligned_cols=187 Identities=24% Similarity=0.282 Sum_probs=167.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|.|+|||||++|||+++|++|.+.| ..||+++|++..++++.... ..++...||+.|.+++.++++++++.
T Consensus 1 mk~tgnTiLITGG~sGIGl~lak~f~elg-N~VIi~gR~e~~L~e~~~~~----p~~~t~v~Dv~d~~~~~~lvewLkk~ 75 (245)
T COG3967 1 MKTTGNTILITGGASGIGLALAKRFLELG-NTVIICGRNEERLAEAKAEN----PEIHTEVCDVADRDSRRELVEWLKKE 75 (245)
T ss_pred CcccCcEEEEeCCcchhhHHHHHHHHHhC-CEEEEecCcHHHHHHHHhcC----cchheeeecccchhhHHHHHHHHHhh
Confidence 35789999999999999999999999999 79999999998888776654 57889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCC-CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++.+++||||||++..-... .+...+..+..+++|+.+++.++++++|++.++. .+.||+|||..+..
T Consensus 76 ~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~--~a~IInVSSGLafv--------- 144 (245)
T COG3967 76 YPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQP--EATIINVSSGLAFV--------- 144 (245)
T ss_pred CCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CceEEEeccccccC---------
Confidence 99999999999998543222 2445677889999999999999999999999886 48999999999884
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
|......|+.+|+|+..|+.+|..++ ...+|.|.-+.|..|+|+
T Consensus 145 --------------------------Pm~~~PvYcaTKAaiHsyt~aLR~Ql-k~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 145 --------------------------PMASTPVYCATKAAIHSYTLALREQL-KDTSVEVIELAPPLVDTT 188 (245)
T ss_pred --------------------------cccccccchhhHHHHHHHHHHHHHHh-hhcceEEEEecCCceecC
Confidence 77788899999999999999999998 778999999999999996
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=233.11 Aligned_cols=231 Identities=18% Similarity=0.201 Sum_probs=185.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|++|||||+++||++++++|+++| ++|++++|+... . ....++.+|+++.++++++++++.+.+ +
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G-~~v~~~~r~~~~------~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~-~ 68 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLG-HQVIGIARSAID------D-----FPGELFACDLADIEQTAATLAQINEIH-P 68 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCccc------c-----cCceEEEeeCCCHHHHHHHHHHHHHhC-C
Confidence 57899999999999999999999999 599999998643 0 112578999999999999999988876 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||+|.... ..+.+.+.+++++.+++|+.+++.+.++++|.|++.+ .++||++||...+
T Consensus 69 ~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~-------------- 131 (234)
T PRK07577 69 VDAIVNNVGIALP-QPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLRE--QGRIVNICSRAIF-------------- 131 (234)
T ss_pred CcEEEECCCCCCC-CChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcccccc--------------
Confidence 9999999998654 3455678899999999999999999999999998764 3799999998533
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.+....|+.+|++++.+++.++.++ .+.||++++|+||++.|++............
T Consensus 132 ----------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~ 188 (234)
T PRK07577 132 ----------------------GALDRTSYSAAKSALVGCTRTWALEL-AEYGITVNAVAPGPIETELFRQTRPVGSEEE 188 (234)
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEecCcccCcccccccccchhHH
Confidence 22456789999999999999999998 7789999999999999986543211000000
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+...+.+|++++..++++++++....+|+++.+|+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (234)
T PRK07577 189 KRVLASIPMRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGGG 232 (234)
T ss_pred HHHhhcCCCCCCcCHHHHHHHHHHHhCcccCCccceEEEecCCc
Confidence 11122233344568999999999999888777999999999863
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=233.46 Aligned_cols=245 Identities=19% Similarity=0.186 Sum_probs=200.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||+|+||+++++.|+++| ++|++++|+.++.....+.+...+.++.++.+|+++.++++++++++.+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADG-AEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999 599999999877776666665555678999999999999999999999988
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... ..+.+.+.++++..+++|+.+++.+.+.+++.+.+.+ .+++|++||..+..
T Consensus 82 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~ii~~ss~~~~~----------- 147 (251)
T PRK12826 82 GRLDILVANAGIFPL-TPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAG--GGRIVLTSSVAGPR----------- 147 (251)
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechHhhc-----------
Confidence 999999999998754 3455678899999999999999999999999997764 37999999987651
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+.++...|+.+|++++.+++.++.++ .+.|++++.++||.+.|++.........
T Consensus 148 -----------------------~~~~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~~~- 202 (251)
T PRK12826 148 -----------------------VGYPGLAHYAASKAGLVGFTRALALEL-AARNITVNSVHPGGVDTPMAGNLGDAQW- 202 (251)
T ss_pred -----------------------cCCCCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCCCCcchhhhcCchHH-
Confidence 134567789999999999999999998 6779999999999999985433221100
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+...+.+++|+++.+++++..+....+|+.+..+++.
T Consensus 203 -~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~ 247 (251)
T PRK12826 203 -AEAIAAAIPLGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGA 247 (251)
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 001111223346789999999999999877767899999998864
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=237.42 Aligned_cols=227 Identities=20% Similarity=0.212 Sum_probs=182.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCc-eEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN-YTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~-i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|+++||||++|||++++++|+++|+ .|++++|+.+.++...+++...+.+ +.++.+|+++.++++++++++.+.++++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 5799999999999999999999995 8999999987777776666544343 5668999999999999999999889999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.... ..+.+.+.++|+..+++|+.+++.++++++|.|.+... .++||++||..+..
T Consensus 80 d~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~-~g~ii~isS~~~~~-------------- 143 (272)
T PRK07832 80 DVVMNIAGISAW-GTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGR-GGHLVNVSSAAGLV-------------- 143 (272)
T ss_pred CEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccccccC--------------
Confidence 999999998644 35567899999999999999999999999999976432 37999999987653
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh---hh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---FR 281 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~---~~ 281 (358)
+.++...|+.+|+++.+|++.++.|+ .+.||+|++|+||+++|++........ ..
T Consensus 144 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~ 201 (272)
T PRK07832 144 ---------------------ALPWHAAYSASKFGLRGLSEVLRFDL-ARHGIGVSVVVPGAVKTPLVNTVEIAGVDRED 201 (272)
T ss_pred ---------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhcccccccCcch
Confidence 44567789999999999999999998 778999999999999998653311000 00
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.....+......+..+|+++|+.+++++..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~vA~~~~~~~~~ 231 (272)
T PRK07832 202 PRVQKWVDRFRGHAVTPEKAAEKILAGVEK 231 (272)
T ss_pred hhHHHHHHhcccCCCCHHHHHHHHHHHHhc
Confidence 000111111234568999999999999964
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-30 Score=264.66 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=200.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+.+++|++|||||+||||++++++|+++|+ .|++++|+.+.++...+.+... ..++..+++|+++.+++.++++++.
T Consensus 410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 410 KTLARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 458899999999999999999999999995 9999999987777666555422 2367889999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.+.|+..+++|+.+++.+++.+++.|+++.. +++||++||..+..
T Consensus 489 ~~~g~iDilV~nAG~~~~-~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~-~g~IV~iSS~~a~~-------- 558 (676)
T TIGR02632 489 LAYGGVDIVVNNAGIATS-SPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGL-GGNIVFIASKNAVY-------- 558 (676)
T ss_pred HhcCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCEEEEEeChhhcC--------
Confidence 999999999999998643 35667789999999999999999999999999987542 37999999988764
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC-ccccc-c
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT-GLFRE-H 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~-~~~~~-~ 276 (358)
+.++...|+.||++++.+++.++.++ .+.||+||+|+||.|.++ .+... .
T Consensus 559 ---------------------------~~~~~~aY~aSKaA~~~l~r~lA~el-~~~gIrVn~V~Pg~V~~~s~~~~~~~ 610 (676)
T TIGR02632 559 ---------------------------AGKNASAYSAAKAAEAHLARCLAAEG-GTYGIRVNTVNPDAVLQGSGIWDGEW 610 (676)
T ss_pred ---------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEECCceecCcccccccc
Confidence 44567899999999999999999998 778999999999998652 22111 1
Q ss_pred hh--h------hhhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IP--L------FRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~--~------~~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. . ...... .....+.++.++|+|+|+++++|+++....+||+++.+||+.
T Consensus 611 ~~~~~~~~~~~~~~~~~~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG~ 670 (676)
T TIGR02632 611 REERAAAYGIPADELEEHYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGGV 670 (676)
T ss_pred hhhhhhcccCChHHHHHHHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCc
Confidence 00 0 000011 112334456789999999999999887778999999999875
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=238.39 Aligned_cols=233 Identities=18% Similarity=0.141 Sum_probs=186.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+||||++++++|+++|+ .|++++|+.+.++...+++...+.++.++++|+++.++++++++.+.+.+
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56789999999999999999999999995 99999999877777766665556678899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCC----CCeEEEEecCCCCCCCcCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP----SKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~----~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+++|+||||||.... ..+.+.+.+.|+..+++|+.|++.++++++|.|.++... .++||++||..+..
T Consensus 82 g~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~------- 153 (287)
T PRK06194 82 GAVHLLFNNAGVGAG-GLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL------- 153 (287)
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-------
Confidence 999999999999754 355677889999999999999999999999999876531 16999999988874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.++.. ..+|+++.++||++.|++.....
T Consensus 154 ----------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~~~ 205 (287)
T PRK06194 154 ----------------------------APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQSER 205 (287)
T ss_pred ----------------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccccc
Confidence 3356678999999999999999999842 45799999999999998553321
Q ss_pred -hhh--hhh---------hcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 277 -IPL--FRL---------LFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 277 -~~~--~~~---------~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.+. ... .............++++++|+.++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~dva~~i~~~~~~ 252 (287)
T PRK06194 206 NRPADLANTAPPTRSQLIAQAMSQKAVGSGKVTAEEVAQLVFDAIRA 252 (287)
T ss_pred cCchhcccCccccchhhHHHHHHHhhhhccCCCHHHHHHHHHHHHHc
Confidence 110 000 00011111112347999999999998743
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=235.17 Aligned_cols=222 Identities=23% Similarity=0.232 Sum_probs=185.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++++++|||||+||||++++++|+++| +.|++++|+.+.++....++ ..+.++.++.+|+++.+++.++++.+.+
T Consensus 1 m~~~~~~vlItG~s~~iG~~ia~~l~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~- 77 (263)
T PRK09072 1 MDLKDKRVLLTGASGGIGQALAEALAAAG-ARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARARE- 77 (263)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHh-
Confidence 35789999999999999999999999999 49999999988877777666 3456889999999999999999998876
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.+++.+++|+.|++.+++.+++++.++. .++||++||..+..
T Consensus 78 ~~~id~lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 144 (263)
T PRK09072 78 MGGINVLINNAGVNHF-ALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQP--SAMVVNVGSTFGSI---------- 144 (263)
T ss_pred cCCCCEEEECCCCCCc-cccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEecChhhCc----------
Confidence 7899999999998644 3566778899999999999999999999999998764 37999999987763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|+++..+++.++.++ .+.||+|++|+||+++|++......
T Consensus 145 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~~~t~~~~~~~~--- 195 (263)
T PRK09072 145 -------------------------GYPGYASYCASKFALRGFSEALRREL-ADTGVRVLYLAPRATRTAMNSEAVQ--- 195 (263)
T ss_pred -------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccccchhhhcc---
Confidence 44567789999999999999999999 7789999999999999975322110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
. .. .....++.+|+++|+.+++++...
T Consensus 196 -~---~~-~~~~~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 196 -A---LN-RALGNAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred -c---cc-ccccCCCCCHHHHHHHHHHHHhCC
Confidence 0 00 011224679999999999999864
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=232.84 Aligned_cols=225 Identities=18% Similarity=0.255 Sum_probs=178.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++||||++|||++++++|+++|. ..|++..|+.... . ...++.++++|+++.++++++. +.++++
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~--~~~~~~~~~~Dls~~~~~~~~~----~~~~~i 68 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F--QHDNVQWHALDVTDEAEIKQLS----EQFTQL 68 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c--ccCceEEEEecCCCHHHHHHHH----HhcCCC
Confidence 4799999999999999999999852 3666666754221 1 2357889999999999988754 445789
Q ss_pred cEEEEcccccCC-----CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 125 DVLVCNAAVYLP-----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 125 D~lv~~ag~~~~-----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
|+||||||.... ...+.+.+.+.|++.+++|+.+++.+++.++|.|.+++ .++|+++||..+...
T Consensus 69 d~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~~~i~~iss~~~~~~-------- 138 (235)
T PRK09009 69 DWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSE--SAKFAVISAKVGSIS-------- 138 (235)
T ss_pred CEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccC--CceEEEEeecccccc--------
Confidence 999999998743 22455678889999999999999999999999998764 379999998665420
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc--CCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE--TGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~--~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
..+.+++..|+.+|+++..|++.|+.|+ .+ ++|+|++|+||+++|++... .
T Consensus 139 ------------------------~~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~~~~i~v~~v~PG~v~t~~~~~-~- 191 (235)
T PRK09009 139 ------------------------DNRLGGWYSYRASKAALNMFLKTLSIEW-QRSLKHGVVLALHPGTTDTALSKP-F- 191 (235)
T ss_pred ------------------------cCCCCCcchhhhhHHHHHHHHHHHHHHh-hcccCCeEEEEEcccceecCCCcc-h-
Confidence 0134567799999999999999999998 43 69999999999999986532 1
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
....+..++.+|+++++.+++++++.....+|+++.+++...
T Consensus 192 ---------~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~~ 233 (235)
T PRK09009 192 ---------QQNVPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGETL 233 (235)
T ss_pred ---------hhccccCCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCCcCC
Confidence 011223456799999999999999987778999999998764
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=238.18 Aligned_cols=223 Identities=22% Similarity=0.300 Sum_probs=178.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-CC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-RP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~-~~ 123 (358)
+|++|||||+||||+++++.|+++| ++|++++|+.+.++.... ..+.++.+|+++.++++++++++.+.+ ++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G-~~Vi~~~r~~~~~~~l~~------~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~ 76 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDG-WRVFATCRKEEDVAALEA------EGLEAFQLDYAEPESIAALVAQVLELSGGR 76 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHH------CCceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 6799999999999999999999999 599999999876654432 247889999999999999999987754 68
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.++++..+++|+.|++.+++.++|.|.+.+ .++||++||..+..
T Consensus 77 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~--~g~iv~isS~~~~~------------- 140 (277)
T PRK05993 77 LDALFNNGAYGQP-GAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG--QGRIVQCSSILGLV------------- 140 (277)
T ss_pred ccEEEECCCcCCC-CCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC--CCEEEEECChhhcC-------------
Confidence 9999999998654 3566788899999999999999999999999998765 37999999988763
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh-
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL- 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~- 282 (358)
+.++...|+.||++++.|+++++.|+ .+.||+|++|+||+++|++.......+...
T Consensus 141 ----------------------~~~~~~~Y~asK~a~~~~~~~l~~el-~~~gi~v~~v~Pg~v~T~~~~~~~~~~~~~~ 197 (277)
T PRK05993 141 ----------------------PMKYRGAYNASKFAIEGLSLTLRMEL-QGSGIHVSLIEPGPIETRFRANALAAFKRWI 197 (277)
T ss_pred ----------------------CCCccchHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCCccCchhhHHHHHHhhhh
Confidence 44567789999999999999999999 788999999999999998543321111000
Q ss_pred ----------hcch---hH--HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 283 ----------LFPP---FQ--KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 283 ----------~~~~---~~--~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.... .. ........+|+++++.++..+....
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~i~~a~~~~~ 243 (277)
T PRK05993 198 DIENSVHRAAYQQQMARLEGGGSKSRFKLGPEAVYAVLLHALTAPR 243 (277)
T ss_pred ccccchhHHHHHHHHHHHHhhhhccccCCCHHHHHHHHHHHHcCCC
Confidence 0000 00 0011224689999999999987653
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=231.69 Aligned_cols=237 Identities=22% Similarity=0.234 Sum_probs=190.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++++++||||+++||+++++.|+++|+ +|++++|+.++.+...+.. ...++.+|+++.+++.++++.
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~---- 74 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGET-----GCEPLRLDVGDDAAIRAALAA---- 74 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----CCeEEEecCCCHHHHHHHHHH----
Confidence 357899999999999999999999999994 9999999987666554433 356788999999988887765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+++|+||||+|..... ...+.+.++|++.+++|+.+++.+++++++.+.+.+. .++||++||..+..
T Consensus 75 ~~~~d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 142 (245)
T PRK07060 75 AGAFDGLVNCAGIASLE-SALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGR-GGSIVNVSSQAALV---------- 142 (245)
T ss_pred hCCCCEEEECCCCCCCC-ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CcEEEEEccHHHcC----------
Confidence 46899999999986543 4446788999999999999999999999999875431 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|++++.+++.++.++ .+.||++++++||++.|++....+.. .
T Consensus 143 -------------------------~~~~~~~y~~sK~a~~~~~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~-~ 195 (245)
T PRK07060 143 -------------------------GLPDHLAYCASKAALDAITRVLCVEL-GPHGIRVNSVNPTVTLTPMAAEAWSD-P 195 (245)
T ss_pred -------------------------CCCCCcHhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEeeCCCCCchhhhhccC-H
Confidence 34566789999999999999999998 66799999999999999854322111 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+..++.+++|+++.++++++++....+|+++.+|++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 196 QKSGPMLAAIPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCC
Confidence 1111222233445688999999999999998887899999999985
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=230.31 Aligned_cols=227 Identities=19% Similarity=0.286 Sum_probs=181.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++++||||+||||.++++.|+++|+ +|++++|+.+.++.....+ +.++.++.+|+++.++++++++++.+.++++|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 76 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDEL---GDNLYIAQLDVRNRAAIEEMLASLPAEWRNID 76 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---ccceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3699999999999999999999995 9999999987766655544 34688999999999999999999988888999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||+|......+..+.+.+.|++++++|+.+++.+++.++|++.+.+ .++||++||..+..
T Consensus 77 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------------- 139 (248)
T PRK10538 77 VLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSW--------------- 139 (248)
T ss_pred EEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECCcccCC---------------
Confidence 9999999753323455678899999999999999999999999998764 37999999987653
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.++...|+.+|++++.|++.++.++ .+.||++++|+||++.|++....... .....
T Consensus 140 --------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~i~~~~~~~~~~~--~~~~~ 196 (248)
T PRK10538 140 --------------------PYAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFK--GDDGK 196 (248)
T ss_pred --------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCCCcEEEEEeCCeecccccchhhcc--CcHHH
Confidence 44567789999999999999999999 77899999999999986654321100 00000
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCCCCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTK 316 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~ 316 (358)
...........+|+++|+.++++++.+....
T Consensus 197 ~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~ 227 (248)
T PRK10538 197 AEKTYQNTVALTPEDVSEAVWWVATLPAHVN 227 (248)
T ss_pred HHhhccccCCCCHHHHHHHHHHHhcCCCccc
Confidence 0001112235799999999999998775533
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=229.60 Aligned_cols=221 Identities=19% Similarity=0.235 Sum_probs=186.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++||||+|+||++++++|+++|+ .|++++|+....+....++...+.++.++.+|+++.+++.++++++.+.+
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999995 99999999877777666665556689999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... ..+.+.+.+.|++.+++|+.+++.+++++.+++.+.. .+++|++||..+..
T Consensus 83 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~ss~~~~~----------- 148 (239)
T PRK07666 83 GSIDILINNAGISKF-GKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQ--SGDIINISSTAGQK----------- 148 (239)
T ss_pred CCccEEEEcCccccC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEEcchhhcc-----------
Confidence 999999999998643 3455778899999999999999999999999998765 37999999988764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|+++..+++.++.++ .+.||+++.|+||++.|++........
T Consensus 149 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~-- 201 (239)
T PRK07666 149 ------------------------GAAVTSAYSASKFGVLGLTESLMQEV-RKHNIRVTALTPSTVATDMAVDLGLTD-- 201 (239)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccCcchhhccccc--
Confidence 44566789999999999999999998 778999999999999998543211000
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.....+.+++++++.++.+++..
T Consensus 202 --------~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 202 --------GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred --------cCCCCCCCHHHHHHHHHHHHhCC
Confidence 01134679999999999999765
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-30 Score=233.20 Aligned_cols=215 Identities=14% Similarity=0.141 Sum_probs=174.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-HHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+|++|||||++|||+++|++|+++|..+|++++|+.++ ++...++++..+ .+++++++|+++.+++.++++++.+ +
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~-~ 85 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFA-G 85 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHh-c
Confidence 467999999999999999999999963599999998765 676666665543 3789999999999999999998876 4
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|++|||+|........ ..+.+...+++++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 86 g~id~li~~ag~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~--~~~iv~isS~~g~~----------- 151 (253)
T PRK07904 86 GDVDVAIVAFGLLGDAEEL-WQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQG--FGQIIAMSSVAGER----------- 151 (253)
T ss_pred CCCCEEEEeeecCCchhhc-ccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcC--CceEEEEechhhcC-----------
Confidence 7999999999986432111 123455667899999999999999999999875 38999999987753
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+++.+|++.++.|+ .+.||+|++|+||+++|++.....
T Consensus 152 ------------------------~~~~~~~Y~~sKaa~~~~~~~l~~el-~~~~i~v~~v~Pg~v~t~~~~~~~----- 201 (253)
T PRK07904 152 ------------------------VRRSNFVYGSTKAGLDGFYLGLGEAL-REYGVRVLVVRPGQVRTRMSAHAK----- 201 (253)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeeCceecchhccCC-----
Confidence 23455679999999999999999998 778999999999999997543211
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
. .....+|+++|+.++..+...
T Consensus 202 ---~------~~~~~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 202 ---E------APLTVDKEDVAKLAVTAVAKG 223 (253)
T ss_pred ---C------CCCCCCHHHHHHHHHHHHHcC
Confidence 0 012469999999999999754
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=230.13 Aligned_cols=241 Identities=15% Similarity=0.170 Sum_probs=188.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++++++|||||+|+||++++++|+++|+ .|++..| +........+.+...+.++.++.+|+++.+++.++++++.+
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATID 80 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHH
Confidence 357889999999999999999999999995 7766665 34444444444544455788899999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ....+.+.+.++..+++|+.+++.+++++.+++.+. ++||++||..+..
T Consensus 81 ~~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~iv~~sS~~~~~--------- 146 (252)
T PRK06077 81 RYGVADILVNNAGLGLF-SPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG----GAIVNIASVAGIR--------- 146 (252)
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC----cEEEEEcchhccC---------
Confidence 88999999999998644 345567788899999999999999999999998763 6999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+++..|+.+|++++.+++.+++++ .+ +|+++.|.||+++|++... ....
T Consensus 147 --------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~v~~v~Pg~i~t~~~~~-~~~~ 197 (252)
T PRK06077 147 --------------------------PAYGLSIYGAMKAAVINLTKYLALEL-AP-KIRVNAIAPGFVKTKLGES-LFKV 197 (252)
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hc-CCEEEEEeeCCccChHHHh-hhhc
Confidence 55678899999999999999999998 55 9999999999999985322 1110
Q ss_pred hhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+. .....++++|+|+|+.+++++..+ ..+|+.+..++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~--~~~g~~~~i~~g~ 245 (252)
T PRK06077 198 LGMSEKEFAEKFTLMGKILDPEEVAEFVAAILKIE--SITGQVFVLDSGE 245 (252)
T ss_pred ccccHHHHHHhcCcCCCCCCHHHHHHHHHHHhCcc--ccCCCeEEecCCe
Confidence 000000111 112235789999999999999754 4578888777653
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=227.95 Aligned_cols=242 Identities=22% Similarity=0.232 Sum_probs=194.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+|+||++++++|+++|+ .|+++.|+.. ..+....++...+.++.++.+|+++.+++.++++++.+.
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAE 80 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999995 8877766643 345555555555678899999999999999999999988
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ....+.+.+.+++.+++|+.+++.+.+++++.+.+.+ .+++|++||..+..
T Consensus 81 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~iss~~~~~---------- 147 (248)
T PRK05557 81 FGGVDILVNNAGITRD-NLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQR--SGRIINISSVVGLM---------- 147 (248)
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEEcccccCc----------
Confidence 8899999999998654 3445678899999999999999999999999987764 36999999987663
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|++++.+++.+++++ ...+|++++++||++.|++... ..+..
T Consensus 148 -------------------------~~~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~v~pg~~~~~~~~~-~~~~~ 200 (248)
T PRK05557 148 -------------------------GNPGQANYAASKAGVIGFTKSLAREL-ASRGITVNAVAPGFIETDMTDA-LPEDV 200 (248)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccCCccccc-cChHH
Confidence 33567789999999999999999998 6779999999999998875432 11111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
........+...+.+++++++.+.+++.+.....+|+.+..|+.
T Consensus 201 --~~~~~~~~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 201 --KEAILAQIPLGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred --HHHHHhcCCCCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 11111122334467999999999999988676789999999875
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=232.85 Aligned_cols=232 Identities=22% Similarity=0.255 Sum_probs=184.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|+++||||+|+||+++++.|+++|+ +|++++|+...++.....+...+.++.++.+|+++.+++.++++++.+.
T Consensus 6 ~~~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (274)
T PRK07775 6 PHPDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEA 84 (274)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 457789999999999999999999999995 9999999877666665555544567889999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ....+.+.+.+++.+++|+.+++.+++++++.+.++. .++||++||..+..
T Consensus 85 ~~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~--~g~iv~isS~~~~~---------- 151 (274)
T PRK07775 85 LGEIEVLVSGAGDTYF-GKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERR--RGDLIFVGSDVALR---------- 151 (274)
T ss_pred cCCCCEEEECCCcCCC-cccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CceEEEECChHhcC----------
Confidence 8899999999998644 3455678899999999999999999999999987654 37999999987763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|++++.+++.+++++ ...||++++|+||+++|+..........
T Consensus 152 -------------------------~~~~~~~Y~~sK~a~~~l~~~~~~~~-~~~gi~v~~v~pG~~~t~~~~~~~~~~~ 205 (274)
T PRK07775 152 -------------------------QRPHMGAYGAAKAGLEAMVTNLQMEL-EGTGVRASIVHPGPTLTGMGWSLPAEVI 205 (274)
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCCcccCcccccCChhhh
Confidence 33456789999999999999999998 6779999999999998874322110000
Q ss_pred hhhcchhHH---hhhcCccchhHHhhhhhhhhcCC
Q 018331 281 RLLFPPFQK---YITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~~~~~~~---~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
......... .....++.++|+|++++++++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~ 240 (274)
T PRK07775 206 GPMLEDWAKWGQARHDYFLRASDLARAITFVAETP 240 (274)
T ss_pred hHHHHHHHHhcccccccccCHHHHHHHHHHHhcCC
Confidence 000011111 11234789999999999999865
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=227.22 Aligned_cols=243 Identities=19% Similarity=0.222 Sum_probs=195.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++.|++|||||+|+||++++++|+++|+ .|+++.| +....+.....+...+.++.++.+|+++.+++.++++++.+.
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGA-DVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVER 81 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999999995 7666555 444445555555545667899999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++.+|++|||+|.... ..+.+.+.+.++..+++|+.+++.+++.+++++.+.+ .+++|++||..+..
T Consensus 82 ~~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~i~~SS~~~~~---------- 148 (249)
T PRK12825 82 FGRIDILVNNAGIFED-KPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQR--GGRIVNISSVAGLP---------- 148 (249)
T ss_pred cCCCCEEEECCccCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECccccCC----------
Confidence 8899999999997644 3455678899999999999999999999999998765 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|+++..+++.+++++ ...||+++.++||.+.|++.........
T Consensus 149 -------------------------~~~~~~~y~~sK~~~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~~~~~~ 202 (249)
T PRK12825 149 -------------------------GWPGRSNYAAAKAGLVGLTKALAREL-AEYGITVNMVAPGDIDTDMKEATIEEAR 202 (249)
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCccCCccccccchhH
Confidence 34567789999999999999999998 6679999999999999986544322111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ....+..++.+++|+++.+.+++++.....+|+++.+++..
T Consensus 203 ~~~---~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g~ 246 (249)
T PRK12825 203 EAK---DAETPLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGGV 246 (249)
T ss_pred Hhh---hccCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCE
Confidence 110 11223345789999999999999887767899999999863
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=226.50 Aligned_cols=242 Identities=21% Similarity=0.256 Sum_probs=198.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+|++|||||+|+||+++++.|+++| +.|++++|+....+.....+...+.++.++.+|+++.+++.++++++...+
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADG-AKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAF 80 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999 589999999877776666666556788999999999999999999998888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+|||++|.... ....+.+.+.++..++.|+.+++.+++.+.+++.+.+ .++||++||..+..
T Consensus 81 ~~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~--~~~ii~~ss~~~~~----------- 146 (246)
T PRK05653 81 GALDILVNNAGITRD-ALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKAR--YGRIVNISSVSGVT----------- 146 (246)
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEECcHHhcc-----------
Confidence 899999999998654 3455678899999999999999999999999997765 37999999987653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+..+...|+.+|++++.+++.+++++ .+.++++++|+||.+.+++... ......
T Consensus 147 ------------------------~~~~~~~y~~sk~~~~~~~~~l~~~~-~~~~i~~~~i~pg~~~~~~~~~-~~~~~~ 200 (246)
T PRK05653 147 ------------------------GNPGQTNYSAAKAGVIGFTKALALEL-ASRGITVNAVAPGFIDTDMTEG-LPEEVK 200 (246)
T ss_pred ------------------------CCCCCcHhHhHHHHHHHHHHHHHHHH-hhcCeEEEEEEeCCcCCcchhh-hhHHHH
Confidence 33456789999999999999999998 7779999999999999985432 111100
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.......+...+++++++++.++++++......+|+++..+|+
T Consensus 201 --~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 243 (246)
T PRK05653 201 --AEILKEIPLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGG 243 (246)
T ss_pred --HHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 0111122234578999999999999987777789999999885
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=229.48 Aligned_cols=246 Identities=24% Similarity=0.248 Sum_probs=195.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||+|+||++++++|+++|+ .|++++|+.+..+...+..... ++.++.+|+++.+++.++++++.+.
T Consensus 7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGA--KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred hccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcC--ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999999994 8999999977666655544322 6789999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|...........+.+.+++++++|+.+++.+++.+++.+...+. +++|+++||..+..
T Consensus 84 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~vv~~ss~~~~~---------- 152 (264)
T PRK12829 84 FGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGH-GGVIIALSSVAGRL---------- 152 (264)
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CeEEEEeccccccc----------
Confidence 8899999999998744445557788999999999999999999999998876542 25788888877653
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-- 278 (358)
+.+++..|+.+|++++.+++.++.++ ...++++++|+||++.|++.......
T Consensus 153 -------------------------~~~~~~~y~~~K~a~~~~~~~l~~~~-~~~~i~~~~l~pg~v~~~~~~~~~~~~~ 206 (264)
T PRK12829 153 -------------------------GYPGRTPYAASKWAVVGLVKSLAIEL-GPLGIRVNAILPGIVRGPRMRRVIEARA 206 (264)
T ss_pred -------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcCChHHHHHhhhhh
Confidence 44566789999999999999999998 67799999999999999865321110
Q ss_pred ------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 ------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 ------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
............+..++++++++++++++++++.....+|+++..+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~i~~g 260 (264)
T PRK12829 207 QQLGIGLDEMEQEYLEKISLGRMVEPEDIAATALFLASPAARYITGQAISVDGN 260 (264)
T ss_pred hccCCChhHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCccCcEEEeCCC
Confidence 000000111122334578999999999999987655689999988875
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-29 Score=229.08 Aligned_cols=220 Identities=21% Similarity=0.182 Sum_probs=181.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-CCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~~~i 124 (358)
|++|||||+||||++++++|+++|+ .|++++|+.+.++...+.+. +.++.++++|+++.+++.++++.+.+. ++++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i 78 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--AGNAWTGALDVTDRAAWDAALADFAAATGGRL 78 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--CCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 6899999999999999999999994 99999999887777766554 457899999999999999999988776 7899
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... ..+.+.+.++++.++++|+.+++.+++++.++|+..+ .++||++||..+..
T Consensus 79 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~-------------- 141 (260)
T PRK08267 79 DVLFNNAGILRG-GPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATP--GARVINTSSASAIY-------------- 141 (260)
T ss_pred CEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEeCchhhCc--------------
Confidence 999999998754 3566778899999999999999999999999998764 38999999988764
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||+++++|+++++.++ .+.||++++|+||++.|++....... ...
T Consensus 142 ---------------------~~~~~~~Y~~sKaa~~~~~~~l~~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~---~~~ 196 (260)
T PRK08267 142 ---------------------GQPGLAVYSATKFAVRGLTEALDLEW-RRHGIRVADVMPLFVDTAMLDGTSNE---VDA 196 (260)
T ss_pred ---------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcCCcccccccch---hhh
Confidence 34567789999999999999999998 77899999999999999855421100 000
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
..... .....+|+++++.+++++...
T Consensus 197 ~~~~~--~~~~~~~~~va~~~~~~~~~~ 222 (260)
T PRK08267 197 GSTKR--LGVRLTPEDVAEAVWAAVQHP 222 (260)
T ss_pred hhHhh--ccCCCCHHHHHHHHHHHHhCC
Confidence 01111 123468999999999999643
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=231.92 Aligned_cols=222 Identities=22% Similarity=0.227 Sum_probs=179.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++++++||||+||||++++++|+++| ++|++++|+....+. ..+++++++|++|.++++++++.+.+.+++
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g-~~V~~~~r~~~~~~~--------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAG-YRVFGTSRNPARAAP--------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCChhhccc--------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999 589999998654321 246789999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.+.+++++++|+.+++.+++.++|+|++.+ .++||++||..+..
T Consensus 74 ~d~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 137 (270)
T PRK06179 74 IDVLVNNAGVGLA-GAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG--SGRIINISSVLGFL------------- 137 (270)
T ss_pred CCEEEECCCCCCC-cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEECCccccC-------------
Confidence 9999999998754 3556778999999999999999999999999998765 38999999988764
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh----
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---- 279 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~---- 279 (358)
+.+....|+.+|++++.+++.++.|+ .+.||++++|+||++.|++........
T Consensus 138 ----------------------~~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~ 194 (270)
T PRK06179 138 ----------------------PAPYMALYAASKHAVEGYSESLDHEV-RQFGIRVSLVEPAYTKTNFDANAPEPDSPLA 194 (270)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeCCCcccccccccCCCCCcch
Confidence 34567789999999999999999999 778999999999999998543221110
Q ss_pred -hhhhcc---hhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 280 -FRLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 280 -~~~~~~---~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
...... ........+..+|+++++.+++++..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~va~~~~~~~~~~~ 232 (270)
T PRK06179 195 EYDRERAVVSKAVAKAVKKADAPEVVADTVVKAALGPW 232 (270)
T ss_pred hhHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHcCCC
Confidence 000000 0011122345789999999999998754
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-29 Score=230.81 Aligned_cols=231 Identities=22% Similarity=0.275 Sum_probs=185.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++|++|||||+|+||+++++.|+++| +.|++++|+.+.++...+.+... +.++.++.+|+++.++++. ++++.+.
T Consensus 1 ~~~k~~lItGasg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~ 78 (280)
T PRK06914 1 MNKKIAIVTGASSGFGLLTTLELAKKG-YLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKE 78 (280)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHhCC-CEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHh
Confidence 357899999999999999999999999 59999999987776665554432 3578999999999999999 8888888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||+|.... ....+.+.+.+++.+++|+.+++.+++.++|+|++.+ .++||++||..+..
T Consensus 79 ~~~id~vv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~vsS~~~~~---------- 145 (280)
T PRK06914 79 IGRIDLLVNNAGYANG-GFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQK--SGKIINISSISGRV---------- 145 (280)
T ss_pred cCCeeEEEECCccccc-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEECcccccC----------
Confidence 8999999999998754 3455778899999999999999999999999998764 37999999987764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
+.++...|+.+|+++..++++++.++ .+.||++++|+||+++|++......
T Consensus 146 -------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~ 199 (280)
T PRK06914 146 -------------------------GFPGLSPYVSSKYALEGFSESLRLEL-KPFGIDVALIEPGSYNTNIWEVGKQLAE 199 (280)
T ss_pred -------------------------CCCCCchhHHhHHHHHHHHHHHHHHh-hhhCCEEEEEecCCcccchhhccccccc
Confidence 44567789999999999999999998 7789999999999999985432110
Q ss_pred -------hhhhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 278 -------PLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 278 -------~~~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.....+..... .....++.+|+|+|++++++++++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~ 245 (280)
T PRK06914 200 NQSETTSPYKEYMKKIQKHINSGSDTFGNPIDVANLIVEIAESKRP 245 (280)
T ss_pred cccccccchHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHcCCCC
Confidence 00000000000 11234578999999999999987654
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-29 Score=227.44 Aligned_cols=243 Identities=23% Similarity=0.222 Sum_probs=195.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||+|+||+++++.|+++| ++|++++|+....+.....+...+.++.++.+|+++.+++.++++++.+.++++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAG-ANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 4789999999999999999999999 499999999877766666665555678999999999999999999999888899
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|.... ....+.+++++++++++|+.+++.+++++++.+.+.. .+++|++||..+..
T Consensus 80 d~vi~~a~~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~~v~~ss~~~~~-------------- 142 (255)
T TIGR01963 80 DILVNNAGIQHV-APIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQG--WGRIINIASAHGLV-------------- 142 (255)
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CeEEEEEcchhhcC--------------
Confidence 999999998644 3444667889999999999999999999999997764 36999999987653
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh----
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF---- 280 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~---- 280 (358)
+.+.+..|+.+|++++.+++.++.++ .+.+|+++.++||.+.|++.........
T Consensus 143 ---------------------~~~~~~~y~~sk~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~ 200 (255)
T TIGR01963 143 ---------------------ASPFKSAYVAAKHGLIGLTKVLALEV-AAHGITVNAICPGYVRTPLVEKQIADQAKTRG 200 (255)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHHHHHHhhhcccC
Confidence 34567789999999999999999998 6679999999999999985422111100
Q ss_pred ----hhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 ----RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ----~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+ .......+++++|+|++++++++++....+|+++.+++..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g~ 252 (255)
T TIGR01963 201 IPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGGW 252 (255)
T ss_pred CCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCcc
Confidence 0000001 1112235789999999999999886666799999988754
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-29 Score=246.21 Aligned_cols=239 Identities=21% Similarity=0.204 Sum_probs=191.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..++++++|||||++|||++++++|+++|+ +|++++|.. +.++...+++ ...++.+|+++.++++++++.+.
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~-----~~~~~~~Dv~~~~~~~~~~~~~~ 279 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRV-----GGTALALDITAPDAPARIAEHLA 279 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999996 888888853 3333333332 23578999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.+.|+..+++|+.+++.+.+++++.+..+. +++||++||..+..
T Consensus 280 ~~~g~id~vi~~AG~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~g~iv~~SS~~~~~-------- 348 (450)
T PRK08261 280 ERHGGLDIVVHNAGITRD-KTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGD--GGRIVGVSSISGIA-------- 348 (450)
T ss_pred HhCCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcC--------
Confidence 988999999999998754 3566789999999999999999999999999654433 47999999988764
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.+++..|+.+|++++.|++.++.++ .+.||++|+|+||.++|++... ...
T Consensus 349 ---------------------------g~~~~~~Y~asKaal~~~~~~la~el-~~~gi~v~~v~PG~i~t~~~~~-~~~ 399 (450)
T PRK08261 349 ---------------------------GNRGQTNYAASKAGVIGLVQALAPLL-AERGITINAVAPGFIETQMTAA-IPF 399 (450)
T ss_pred ---------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeCcCcchhhhc-cch
Confidence 34567899999999999999999999 7789999999999999975432 111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+ ....+...|+|++++++||+++....+||+.+.+||..
T Consensus 400 ~~~~~~~~~--~~l~~~~~p~dva~~~~~l~s~~~~~itG~~i~v~g~~ 446 (450)
T PRK08261 400 ATREAGRRM--NSLQQGGLPVDVAETIAWLASPASGGVTGNVVRVCGQS 446 (450)
T ss_pred hHHHHHhhc--CCcCCCCCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 001100011 12234568999999999999988888999999999853
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=224.29 Aligned_cols=214 Identities=21% Similarity=0.244 Sum_probs=179.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|+++||||++|||++++++|+++|+ +|++++|+....+.....+... +.++.++++|+++.+++.++++++.+.++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 67999999999999999999999994 9999999987777666555432 45789999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|++|||||+... ..+.+.+.+.+++.+++|+.+++.+++.+++.+++.+ .++||++||..+..
T Consensus 81 ~id~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~------------ 145 (248)
T PRK08251 81 GLDRVIVNAGIGKG-ARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQG--SGHLVLISSVSAVR------------ 145 (248)
T ss_pred CCCEEEECCCcCCC-CCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEEecccccc------------
Confidence 99999999998644 3455667889999999999999999999999998765 37999999988764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+ ....|+.||+++..+++.++.++ .+.+|++++|+||+++|++......
T Consensus 146 -----------------------~~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~---- 197 (248)
T PRK08251 146 -----------------------GLPGVKAAYAASKAGVASLGEGLRAEL-AKTPIKVSTIEPGYIRSEMNAKAKS---- 197 (248)
T ss_pred -----------------------CCCCCcccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcCcchhhhcccc----
Confidence 222 35689999999999999999998 6779999999999999985433210
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
...+++++++++.++..+...
T Consensus 198 ----------~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 198 ----------TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred ----------CCccCCHHHHHHHHHHHHhcC
Confidence 113568999999999988653
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=226.49 Aligned_cols=224 Identities=22% Similarity=0.259 Sum_probs=183.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++|||||+|+||+++++.|+++| +.|++++|+....+...+.+...+.++.++.+|+++.+++..+++++.+.++++
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 79 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAG-AQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGI 79 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4689999999999999999999999 599999999877777776666556688999999999999999999999888999
Q ss_pred cEEEEcccccCCCCCCCCC-CHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 125 DVLVCNAAVYLPTAKEPTF-TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~-~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
|+||||+|..... .+.+. +.+.+++.+++|+.+++.+++.+++++.++. ++||++||..+..
T Consensus 80 d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---~~iv~~sS~~~~~------------- 142 (263)
T PRK06181 80 DILVNNAGITMWS-RFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASR---GQIVVVSSLAGLT------------- 142 (263)
T ss_pred CEEEECCCccccc-chhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CEEEEEecccccC-------------
Confidence 9999999986543 45566 8889999999999999999999999987653 7999999988763
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.+++..|+.+|++++.+++.++.++ .+.+|++++++||++.|++............
T Consensus 143 ----------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~~~~~~~~~ 199 (263)
T PRK06181 143 ----------------------GVPTRSGYAASKHALHGFFDSLRIEL-ADDGVAVTVVCPGFVATDIRKRALDGDGKPL 199 (263)
T ss_pred ----------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCceEEEEecCccccCcchhhcccccccc
Confidence 44567789999999999999999998 7789999999999999985432111000000
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
... .....++.+|+|+++.++++++.
T Consensus 200 ~~~--~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 200 GKS--PMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred ccc--cccccCCCCHHHHHHHHHHHhhC
Confidence 000 00112578999999999999975
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=221.64 Aligned_cols=233 Identities=22% Similarity=0.237 Sum_probs=192.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||+|+||++++++|+++|+ +|++++|+..+.....+.+.. ..+.++.+|+++.+++.++++++.+.+
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPA--DALRIGGIDLVDPQAARRAVDEVNRQF 80 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhh--cCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 899999987666555544433 246778899999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+|||++|.... ....+.+.+.+++.+.+|+.+++.+++++++.+.+++ .++||++||..+..
T Consensus 81 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 146 (239)
T PRK12828 81 GRLDALVNIAGAFVW-GTIADGDADTWDRMYGVNVKTTLNASKAALPALTASG--GGRIVNIGAGAALK----------- 146 (239)
T ss_pred CCcCEEEECCcccCc-CChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcC--CCEEEEECchHhcc-----------
Confidence 999999999998643 2445668899999999999999999999999988765 37999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.+|+++..+++.++.++ ...+|+++.++||++.|++..... +
T Consensus 147 ------------------------~~~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~i~pg~v~~~~~~~~~-~--- 197 (239)
T PRK12828 147 ------------------------AGPGMGAYAAAKAGVARLTEALAAEL-LDRGITVNAVLPSIIDTPPNRADM-P--- 197 (239)
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCcchhhcC-C---
Confidence 33567789999999999999999998 667999999999999997432211 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+.+++++++.+++++++.....+|+.+..++..
T Consensus 198 -------~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~~ 236 (239)
T PRK12828 198 -------DADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGGV 236 (239)
T ss_pred -------chhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCCE
Confidence 001123578999999999999987667899999998853
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=225.72 Aligned_cols=240 Identities=21% Similarity=0.189 Sum_probs=182.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+||||+++++.|+++| ++|++++|+. ...+.....++..+.++.++++|+++.+++.++++++.+.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAG-AHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCC-CEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999999999 5898888875 3445555555444567889999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++.+|+||||||..... . ..++..+++|+.+++.+++.+.|+|.+. ++||++||..+....
T Consensus 82 ~~~~d~vi~~ag~~~~~----~---~~~~~~~~vn~~~~~~l~~~~~~~~~~~----~~iv~isS~~~~~~~-------- 142 (248)
T PRK07806 82 FGGLDALVLNASGGMES----G---MDEDYAMRLNRDAQRNLARAALPLMPAG----SRVVFVTSHQAHFIP-------- 142 (248)
T ss_pred CCCCcEEEECCCCCCCC----C---CCcceeeEeeeHHHHHHHHHHHhhccCC----ceEEEEeCchhhcCc--------
Confidence 88999999999864221 1 1246789999999999999999998642 699999996543100
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
...+.+.+..|+.||++++.+++.++.++ ++.||++++|.||++.|+....-.....
T Consensus 143 ----------------------~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~ 199 (248)
T PRK07806 143 ----------------------TVKTMPEYEPVARSKRAGEDALRALRPEL-AEKGIGFVVVSGDMIEGTVTATLLNRLN 199 (248)
T ss_pred ----------------------cccCCccccHHHHHHHHHHHHHHHHHHHh-hccCeEEEEeCCccccCchhhhhhccCC
Confidence 00122446789999999999999999999 7789999999999999874321000000
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ....+..++.+|+|++++++++++.. ..+|+.+..+++.
T Consensus 200 ~~~~~-~~~~~~~~~~~~~dva~~~~~l~~~~--~~~g~~~~i~~~~ 243 (248)
T PRK07806 200 PGAIE-ARREAAGKLYTVSEFAAEVARAVTAP--VPSGHIEYVGGAD 243 (248)
T ss_pred HHHHH-HHHhhhcccCCHHHHHHHHHHHhhcc--ccCccEEEecCcc
Confidence 00000 11234457899999999999999854 5699999888865
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=227.09 Aligned_cols=221 Identities=22% Similarity=0.241 Sum_probs=175.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+||||++++++|+++| ++|++++|+....+.... ..+.++.+|+++.+++.++++.+.+.++++|
T Consensus 2 k~vlItGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~------~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 74 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAG-YEVWATARKAEDVEALAA------AGFTAVQLDVNDGAALARLAEELEAEHGGLD 74 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH------CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 689999999999999999999999 599999998766554322 2467889999999999999999998889999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... ..+.+.+.+++++.+++|+.|++.++++++|.+.+.. ++||++||..+..
T Consensus 75 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~--------------- 135 (274)
T PRK05693 75 VLINNAGYGAM-GPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSR---GLVVNIGSVSGVL--------------- 135 (274)
T ss_pred EEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CEEEEECCccccC---------------
Confidence 99999998644 3556778899999999999999999999999997643 7999999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh----
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR---- 281 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~---- 281 (358)
+.+....|+.+|+++..|+++++.|+ ++.||+|++|+||+|+|++..........
T Consensus 136 --------------------~~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~ 194 (274)
T PRK05693 136 --------------------VTPFAGAYCASKAAVHALSDALRLEL-APFGVQVMEVQPGAIASQFASNASREAEQLLAE 194 (274)
T ss_pred --------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccccccccccccchhhcCCC
Confidence 33556789999999999999999998 77899999999999999854331111000
Q ss_pred --hhcch---h---HHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 282 --LLFPP---F---QKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 282 --~~~~~---~---~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
..... + .........+|+++|+.++..+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~ 234 (274)
T PRK05693 195 QSPWWPLREHIQARARASQDNPTPAAEFARQLLAAVQQSP 234 (274)
T ss_pred CCccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCC
Confidence 00000 0 01111234689999999999987544
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=253.19 Aligned_cols=247 Identities=20% Similarity=0.233 Sum_probs=202.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.++||++|||||+||||+++++.|+++|+ +|++++|+.+.++...+.+... .++.++.+|+++.+++.++++++.+.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~ 495 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALA 495 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999995 9999999988877777666544 57889999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.|+..+++|+.+++.+++++++.+++++. +++||++||..+..
T Consensus 496 ~g~iDvvI~~AG~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~-~g~iV~vsS~~~~~---------- 563 (681)
T PRK08324 496 FGGVDIVVSNAGIAIS-GPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGL-GGSIVFIASKNAVN---------- 563 (681)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CcEEEEECCccccC----------
Confidence 9999999999998754 35667899999999999999999999999999987542 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc--cCCcccccchh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI--ATTGLFREHIP 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v--~t~~~~~~~~~ 278 (358)
+.++...|+.||++++.+++.++.++ .+.||++|+|+||.+ .|.+.......
T Consensus 564 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~Pg~v~~~t~~~~~~~~~ 617 (681)
T PRK08324 564 -------------------------PGPNFGAYGAAKAAELHLVRQLALEL-GPDGIRVNGVNPDAVVRGSGIWTGEWIE 617 (681)
T ss_pred -------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCceeecCCccccchhhh
Confidence 34567899999999999999999999 778999999999999 77544332110
Q ss_pred hh--------hhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LF--------RLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~--------~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ..+.. .....+.+..+.++|+|+++++++++.....+|+.+..|++.
T Consensus 618 ~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~~i~vdgG~ 675 (681)
T PRK08324 618 ARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGAIITVDGGN 675 (681)
T ss_pred hhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCCEEEECCCc
Confidence 00 00000 111223445789999999999999866667899999999864
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=212.15 Aligned_cols=244 Identities=16% Similarity=0.174 Sum_probs=207.6
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..|+||++||+|-. +.|++.||+.|.++|| .+.++..++ +++...+++...-....+++||+++.++++++++++.
T Consensus 2 g~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GA-eL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 2 GLLEGKRILIMGVANNRSIAWGIAKALAEQGA-ELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred CccCCceEEEEEecccccHHHHHHHHHHHcCC-EEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHH
Confidence 36899999999987 7999999999999998 999999987 6666666654443446789999999999999999999
Q ss_pred hcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 119 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++++++|.|||+-|.... ...+.+++.|+|...+++..++...+.+++.|.|... |.||.+|-..+..
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~g----gSiltLtYlgs~r----- 150 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNG----GSILTLTYLGSER----- 150 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCC----CcEEEEEecccee-----
Confidence 999999999999998742 2455678999999999999999999999999999874 7999999877763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
..|.+...+.+|++|+.-+|.||.++ .+.|||||+|+-|+++| +...
T Consensus 151 ------------------------------~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISAGPIrT--LAas 197 (259)
T COG0623 151 ------------------------------VVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISAGPIRT--LAAS 197 (259)
T ss_pred ------------------------------ecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecccchHH--HHhh
Confidence 45677789999999999999999999 77799999999999999 3333
Q ss_pred ch-hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 276 HI-PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 276 ~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.. .+...+.......|.++.++.+||+...+||+|+-+..+||+.+.+|.+..
T Consensus 198 gI~~f~~~l~~~e~~aPl~r~vt~eeVG~tA~fLlSdLssgiTGei~yVD~G~~ 251 (259)
T COG0623 198 GIGDFRKMLKENEANAPLRRNVTIEEVGNTAAFLLSDLSSGITGEIIYVDSGYH 251 (259)
T ss_pred ccccHHHHHHHHHhhCCccCCCCHHHhhhhHHHHhcchhcccccceEEEcCCce
Confidence 33 333344444456677889999999999999999999999999999998753
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-28 Score=218.97 Aligned_cols=240 Identities=16% Similarity=0.198 Sum_probs=186.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++++|||||+|+||++++++|+++| ++|++++|+ ....+...+.+... ...+.++.+|+++.+++..+++++.+.
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g-~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAG-YRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCC-CEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999 499988886 34444444444332 346889999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++++.++++|+.+++.+.+++.+++.+.. +.+++++|..+.
T Consensus 83 ~~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~---~~~~~~~~~~~~----------- 147 (249)
T PRK09135 83 FGRLDALVNNASSFYP-TPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQR---GAIVNITDIHAE----------- 147 (249)
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCC---eEEEEEeChhhc-----------
Confidence 9999999999998644 3455667889999999999999999999999987653 688888775543
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.+.++...|+.||++++.+++.++.++ .+ +|++++|+||++.|++.........
T Consensus 148 ------------------------~~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~~~~v~pg~~~~~~~~~~~~~~~ 201 (249)
T PRK09135 148 ------------------------RPLKGYPVYCAAKAALEMLTRSLALEL-AP-EVRVNAVAPGAILWPEDGNSFDEEA 201 (249)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHHH-CC-CCeEEEEEeccccCccccccCCHHH
Confidence 245677899999999999999999998 43 7999999999999986432221111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. .......+.....+++|+++++++++.+ ....+|+.+..++..
T Consensus 202 ~--~~~~~~~~~~~~~~~~d~a~~~~~~~~~-~~~~~g~~~~i~~g~ 245 (249)
T PRK09135 202 R--QAILARTPLKRIGTPEDIAEAVRFLLAD-ASFITGQILAVDGGR 245 (249)
T ss_pred H--HHHHhcCCcCCCcCHHHHHHHHHHHcCc-cccccCcEEEECCCe
Confidence 1 1111122233456899999999888865 334689988888754
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=221.58 Aligned_cols=190 Identities=23% Similarity=0.297 Sum_probs=170.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+|.++|||+-+|+|+.+|++|.++| +.|++.+.+++.++....+.. +++...+++|++++++++++.+.+.+..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~G-f~V~Agcl~~~gae~L~~~~~--s~rl~t~~LDVT~~esi~~a~~~V~~~l 102 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKG-FRVFAGCLTEEGAESLRGETK--SPRLRTLQLDVTKPESVKEAAQWVKKHL 102 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcC-CEEEEEeecCchHHHHhhhhc--CCcceeEeeccCCHHHHHHHHHHHHHhc
Confidence 5778999999999999999999999999 799999998877777766654 6889999999999999999999888853
Q ss_pred --CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 --RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 --~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
..+=.||||||+.....+.+=.+.+++++.++||++|++.+++.++|++++.. ||||+|||+.|..
T Consensus 103 ~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar---GRvVnvsS~~GR~--------- 170 (322)
T KOG1610|consen 103 GEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR---GRVVNVSSVLGRV--------- 170 (322)
T ss_pred ccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc---CeEEEecccccCc---------
Confidence 35899999999875545555678899999999999999999999999999875 8999999999985
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.|....|+.||+|++.|+.++.+|+ .+.||.|..|-||...|+...
T Consensus 171 --------------------------~~p~~g~Y~~SK~aVeaf~D~lR~EL-~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 171 --------------------------ALPALGPYCVSKFAVEAFSDSLRREL-RPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred --------------------------cCcccccchhhHHHHHHHHHHHHHHH-HhcCcEEEEeccCccccccCC
Confidence 66788899999999999999999999 999999999999999998554
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=220.00 Aligned_cols=241 Identities=25% Similarity=0.289 Sum_probs=182.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH--HHHHHHHhcCCC-CceEEEEecCCC-HHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAK-ENYTIMHLDLAS-LDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~--~~~~~~~~~~~~-~~i~~~~~Dl~~-~~~i~~~~~~~ 117 (358)
++++|++|||||++|||+++|+.|+++|+ .|+++.|+... .+...+.....+ ..+.+..+|+++ .++++.+++.+
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~ 80 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGA-RVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAA 80 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999995 87777766443 333333333112 367888899998 99999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.+|++|++|||||.......+.+.+.++|++++++|+.+++.+++++.|.+++ . +||++||..+. ..
T Consensus 81 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~----~-~Iv~isS~~~~-~~----- 149 (251)
T COG1028 81 EEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKK----Q-RIVNISSVAGL-GG----- 149 (251)
T ss_pred HHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhh----C-eEEEECCchhc-CC-----
Confidence 9999999999999999754235668888999999999999999999988888883 2 99999999875 11
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCch-hhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
++ +..|+.||+|+.+|++.++.|+ .+.||++++|+||++.|++.....
T Consensus 150 ------------------------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~PG~~~t~~~~~~~ 198 (251)
T COG1028 150 ------------------------------PPGQAAYAASKAALIGLTKALALEL-APRGIRVNAVAPGYIDTPMTAALE 198 (251)
T ss_pred ------------------------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeccCCCcchhhhh
Confidence 22 5899999999999999999998 788999999999999998664322
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNK 325 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~ 325 (358)
..............+..+...|.+++..+.++.... ....+|..+..++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (251)
T COG1028 199 SAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAASYITGQTLPVDG 248 (251)
T ss_pred hhhhhHHHHHHhcCCCCCCcCHHHHHHHHHHHcCcchhccccCCEEEeCC
Confidence 211000000000002225667889999999887664 3345666665443
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=252.90 Aligned_cols=222 Identities=22% Similarity=0.204 Sum_probs=185.7
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
...++++|+++||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.
T Consensus 365 ~~~~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 443 (657)
T PRK07201 365 LRGPLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDIL 443 (657)
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHH
Confidence 34478999999999999999999999999995 99999999888887777776556789999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCC-CCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.++++|+||||||.......... .+.+++++++++|+.+++.+++.++|.|++++ .++||++||..+..
T Consensus 444 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------- 514 (657)
T PRK07201 444 AEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERR--FGHVVNVSSIGVQT------- 514 (657)
T ss_pred HhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEECChhhcC-------
Confidence 999999999999997533221111 13578999999999999999999999998775 38999999988763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|+++++.|+ .+.||+|++|+||+++|++.....
T Consensus 515 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~T~~~~~~~- 564 (657)
T PRK07201 515 ----------------------------NAPRFSAYVASKAALDAFSDVAASET-LSDGITFTTIHMPLVRTPMIAPTK- 564 (657)
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-HhhCCcEEEEECCcCcccccCccc-
Confidence 34567789999999999999999999 778999999999999998653321
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
. . ......+|+++|+.++..+..
T Consensus 565 ~-----~------~~~~~~~~~~~a~~i~~~~~~ 587 (657)
T PRK07201 565 R-----Y------NNVPTISPEEAADMVVRAIVE 587 (657)
T ss_pred c-----c------cCCCCCCHHHHHHHHHHHHHh
Confidence 0 0 012357999999999998754
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-30 Score=209.77 Aligned_cols=242 Identities=22% Similarity=0.231 Sum_probs=199.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..+|-++|||||.+|+|++.+.+|+.+|+ +|++.+..+++.+...+++. +++.+..+|++++++++.++..++.+|
T Consensus 6 s~kglvalvtggasglg~ataerlakqga-sv~lldlp~skg~~vakelg---~~~vf~padvtsekdv~aala~ak~kf 81 (260)
T KOG1199|consen 6 STKGLVALVTGGASGLGKATAERLAKQGA-SVALLDLPQSKGADVAKELG---GKVVFTPADVTSEKDVRAALAKAKAKF 81 (260)
T ss_pred hhcCeeEEeecCcccccHHHHHHHHhcCc-eEEEEeCCcccchHHHHHhC---CceEEeccccCcHHHHHHHHHHHHhhc
Confidence 35788999999999999999999999997 99999998888888888875 689999999999999999999999999
Q ss_pred CCccEEEEcccccCCC-----CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CCCeEEEEecCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPT-----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITGNTNT 192 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~-----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~g~iv~vsS~~~~~~~ 192 (358)
|++|.+|||||+..-. ..-...+.|+|++.+++|+.|+|+++++..-.|-++.. -+|.||+..|+++.
T Consensus 82 grld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaaf--- 158 (260)
T KOG1199|consen 82 GRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAF--- 158 (260)
T ss_pred cceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeee---
Confidence 9999999999986321 11124578999999999999999999999988876532 24889999999876
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
++.-++.+|++||.++.+|+--+++++ +..||+++.|.||.++||++
T Consensus 159 --------------------------------dgq~gqaaysaskgaivgmtlpiardl-a~~gir~~tiapglf~tpll 205 (260)
T KOG1199|consen 159 --------------------------------DGQTGQAAYSASKGAIVGMTLPIARDL-AGDGIRFNTIAPGLFDTPLL 205 (260)
T ss_pred --------------------------------cCccchhhhhcccCceEeeechhhhhc-ccCceEEEeecccccCChhh
Confidence 366789999999999999999999999 88899999999999999966
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..--......+.... ....++-.|.|.+..+-..++.+ ..+|+.+..||..
T Consensus 206 sslpekv~~fla~~i--pfpsrlg~p~eyahlvqaiienp--~lngevir~dgal 256 (260)
T KOG1199|consen 206 SSLPEKVKSFLAQLI--PFPSRLGHPHEYAHLVQAIIENP--YLNGEVIRFDGAL 256 (260)
T ss_pred hhhhHHHHHHHHHhC--CCchhcCChHHHHHHHHHHHhCc--ccCCeEEEeccee
Confidence 432111111111111 11245678999999999888877 6799999999853
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-28 Score=216.74 Aligned_cols=220 Identities=22% Similarity=0.279 Sum_probs=175.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|+++||||++|||++++++|+++| ++|++++|+....+...+ + .++.++.+|+++.++++++++.+.. +++|
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~-~----~~~~~~~~D~~d~~~~~~~~~~~~~--~~id 73 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERG-WQVTATVRGPQQDTALQA-L----PGVHIEKLDMNDPASLDQLLQRLQG--QRFD 73 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCC-CEEEEEeCCCcchHHHHh-c----cccceEEcCCCCHHHHHHHHHHhhc--CCCC
Confidence 689999999999999999999999 599999998765544322 1 3577889999999999999988754 4799
Q ss_pred EEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 126 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 126 ~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
+||||||.... ...+.+.+.++++..+++|+.+++.+++++++.+.... ++++++||..+....
T Consensus 74 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~---~~iv~~ss~~g~~~~------------ 138 (225)
T PRK08177 74 LLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQ---GVLAFMSSQLGSVEL------------ 138 (225)
T ss_pred EEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcC---CEEEEEccCcccccc------------
Confidence 99999998643 23455778899999999999999999999999987642 689999987665310
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
.+..++..|+.+|++++.|++.+++++ .+++|++++|+||+++|++....
T Consensus 139 --------------------~~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~i~PG~i~t~~~~~~--------- 188 (225)
T PRK08177 139 --------------------PDGGEMPLYKASKAALNSMTRSFVAEL-GEPTLTVLSMHPGWVKTDMGGDN--------- 188 (225)
T ss_pred --------------------CCCCCccchHHHHHHHHHHHHHHHHHh-hcCCeEEEEEcCCceecCCCCCC---------
Confidence 122345679999999999999999999 77899999999999999854221
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...++++.+..++..+.......++.|++|++..
T Consensus 189 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
T PRK08177 189 ---------APLDVETSVKGLVEQIEAASGKGGHRFIDYQGET 222 (225)
T ss_pred ---------CCCCHHHHHHHHHHHHHhCCccCCCceeCcCCcC
Confidence 1136777888888887666544677778888753
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=214.97 Aligned_cols=226 Identities=25% Similarity=0.294 Sum_probs=185.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.+++++||||+|+||++++++|+++|+ +|++++|+...++...+.+... .+++++++|+++.+++.++++++.+.+
T Consensus 3 ~~~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 3 SLKGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK-GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35689999999999999999999999995 8999999987777776666543 678999999999999999999999888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... ..+.+.+.+.+++.+++|+.+++.+++++++.+... .++||++||..+..
T Consensus 81 ~~~d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~---~~~iv~~ss~~~~~----------- 145 (237)
T PRK07326 81 GGLDVLIANAGVGHF-APVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRG---GGYIINISSLAGTN----------- 145 (237)
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHC---CeEEEEECChhhcc-----------
Confidence 899999999997644 345577889999999999999999999999998433 37999999987653
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+..+...|+.+|+++.++++.++.++ ...|+++++|+||++.|+...... .
T Consensus 146 ------------------------~~~~~~~y~~sk~a~~~~~~~~~~~~-~~~gi~v~~v~pg~~~t~~~~~~~-~--- 196 (237)
T PRK07326 146 ------------------------FFAGGAAYNASKFGLVGFSEAAMLDL-RQYGIKVSTIMPGSVATHFNGHTP-S--- 196 (237)
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeccccCccccccc-c---
Confidence 34456789999999999999999998 778999999999999887432211 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
. . ....++++++++.+++++..+.....+...
T Consensus 197 ---~---~--~~~~~~~~d~a~~~~~~l~~~~~~~~~~~~ 228 (237)
T PRK07326 197 ---E---K--DAWKIQPEDIAQLVLDLLKMPPRTLPSKIE 228 (237)
T ss_pred ---h---h--hhccCCHHHHHHHHHHHHhCCccccccceE
Confidence 0 0 012368999999999999888654444433
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=220.51 Aligned_cols=225 Identities=19% Similarity=0.183 Sum_probs=177.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|++|||||+|+||++++++|+++| +.|+++.|+.+..+...+.. ..++.++++|+++.+++.++++++.+.++++
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g-~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARG-DRVAATVRRPDALDDLKARY---GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHhc---cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999 59999999976665554433 3478899999999999999999998888899
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||..... ...+.+.+.+++.+++|+.+++.++++++|+|+++. .++||++||..+..
T Consensus 78 d~vi~~ag~~~~~-~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 140 (276)
T PRK06482 78 DVVVSNAGYGLFG-AAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG--GGRIVQVSSEGGQI-------------- 140 (276)
T ss_pred CEEEECCCCCCCc-ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcCccccc--------------
Confidence 9999999987543 455678899999999999999999999999998764 37999999987652
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h----h
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P----L 279 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~----~ 279 (358)
+.++...|+.||++++.+++.+++++ .+.||+++.++||.+.|++...... . .
T Consensus 141 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~v~pg~~~t~~~~~~~~~~~~~~~ 198 (276)
T PRK06482 141 ---------------------AYPGFSLYHATKWGIEGFVEAVAQEV-APFGIEFTIVEPGPARTNFGAGLDRGAPLDAY 198 (276)
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCccccCCcccccccCCCccc
Confidence 34567899999999999999999998 7789999999999998874321100 0 0
Q ss_pred hhhhcchhHHhhh----cCccchhHHhhhhhhhhcCC
Q 018331 280 FRLLFPPFQKYIT----KGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 280 ~~~~~~~~~~~~~----~~~~~~~~~a~~i~~l~~~~ 312 (358)
.......+..... .-..++++++++++.++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~a~~~~~~~~ 235 (276)
T PRK06482 199 DDTPVGDLRRALADGSFAIPGDPQKMVQAMIASADQT 235 (276)
T ss_pred cchhhHHHHHHHhhccCCCCCCHHHHHHHHHHHHcCC
Confidence 0000001111111 11258999999999998654
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=216.80 Aligned_cols=225 Identities=15% Similarity=0.183 Sum_probs=176.4
Q ss_pred EEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEE
Q 018331 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 128 (358)
Q Consensus 49 lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv 128 (358)
|||||++|||++++++|+++|+ .|++++|+...++...+.++ .+.+++++.+|+++.+++.+++++ .+++|+||
T Consensus 1 lItGas~~iG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~----~~~id~li 74 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGA-RVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAFFAE----AGPFDHVV 74 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHh----cCCCCEEE
Confidence 6999999999999999999995 89999999877666655554 246788999999999999888775 36899999
Q ss_pred EcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccccc
Q 018331 129 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 208 (358)
Q Consensus 129 ~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~ 208 (358)
||+|.... ..+.+.+.+.+++++++|+.+++.+++ ++.+.+ .++||++||..+..
T Consensus 75 ~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~~----~g~iv~~ss~~~~~------------------ 129 (230)
T PRK07041 75 ITAADTPG-GPVRALPLAAAQAAMDSKFWGAYRVAR--AARIAP----GGSLTFVSGFAAVR------------------ 129 (230)
T ss_pred ECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhcC----CeEEEEECchhhcC------------------
Confidence 99998654 355677889999999999999999999 444432 37999999998763
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-hhhhcchh
Q 018331 209 FAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLLFPPF 287 (358)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~~~~~~~~ 287 (358)
+.++...|+.+|+++++++++++.++ . +|++++++||++.|++........ ........
T Consensus 130 -----------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~--~irv~~i~pg~~~t~~~~~~~~~~~~~~~~~~~ 189 (230)
T PRK07041 130 -----------------PSASGVLQGAINAALEALARGLALEL-A--PVRVNTVSPGLVDTPLWSKLAGDAREAMFAAAA 189 (230)
T ss_pred -----------------CCCcchHHHHHHHHHHHHHHHHHHHh-h--CceEEEEeecccccHHHHhhhccchHHHHHHHH
Confidence 44667789999999999999999998 3 499999999999998643210000 00111111
Q ss_pred HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 288 QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 288 ~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...+..++.+|+|+|+.+++++++. ..+|+.+..+++
T Consensus 190 ~~~~~~~~~~~~dva~~~~~l~~~~--~~~G~~~~v~gg 226 (230)
T PRK07041 190 ERLPARRVGQPEDVANAILFLAANG--FTTGSTVLVDGG 226 (230)
T ss_pred hcCCCCCCcCHHHHHHHHHHHhcCC--CcCCcEEEeCCC
Confidence 1223345678999999999999853 578999988875
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=217.17 Aligned_cols=211 Identities=18% Similarity=0.216 Sum_probs=175.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|+++||||++|||++++++|+++| ++|++++|+.++.+...+.+.. .+.++.++++|+++.++++++++++.. .+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G-~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~---~~ 77 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAG-ARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPA---LP 77 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhh---cC
Confidence 689999999999999999999999 5999999998777666555533 245789999999999999999998765 47
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|++|||+|..... ...+.+.+++.+.+++|+.+++.+++++.|.|.+++ .+++|++||..+..
T Consensus 78 d~vv~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~-------------- 140 (243)
T PRK07102 78 DIVLIAVGTLGDQ-AACEADPALALREFRTNFEGPIALLTLLANRFEARG--SGTIVGISSVAGDR-------------- 140 (243)
T ss_pred CEEEECCcCCCCc-ccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC--CCEEEEEecccccC--------------
Confidence 9999999986543 455778899999999999999999999999998765 37999999987663
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.+|+++.+++++++.++ .+.||++++|+||+++|++.....
T Consensus 141 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~v~t~~~~~~~-------- 190 (243)
T PRK07102 141 ---------------------GRASNYVYGSAKAALTAFLSGLRNRL-FKSGVHVLTVKPGFVRTPMTAGLK-------- 190 (243)
T ss_pred ---------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccChhhhccC--------
Confidence 33456689999999999999999998 778999999999999998432210
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.+...+.+|+++++.++.+++..
T Consensus 191 -----~~~~~~~~~~~~a~~i~~~~~~~ 213 (243)
T PRK07102 191 -----LPGPLTAQPEEVAKDIFRAIEKG 213 (243)
T ss_pred -----CCccccCCHHHHHHHHHHHHhCC
Confidence 01124579999999999999754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=215.23 Aligned_cols=233 Identities=18% Similarity=0.188 Sum_probs=187.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++||||+|+||.++++.|+++|+ .|++++|+....+...+.+... .+++++++|+++.+++.++++++...+
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY-GNIHYVVGDVSSTESARNVIEKAAKVL 79 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc-CCeEEEECCCCCHHHHHHHHHHHHHHh
Confidence 47889999999999999999999999995 9999999987776665554432 368899999999999999999988888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|.+|+|+|..... .. .+.+.+++.+++|+.+++.+.+.++|.+.+. +++|++||..+..
T Consensus 80 ~~id~ii~~ag~~~~~-~~--~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~----~~iv~~ss~~~~~----------- 141 (238)
T PRK05786 80 NAIDGLVVTVGGYVED-TV--EEFSGLEEMLTNHIKIPLYAVNASLRFLKEG----SSIVLVSSMSGIY----------- 141 (238)
T ss_pred CCCCEEEEcCCCcCCC-ch--HHHHHHHHHHHHhchHHHHHHHHHHHHHhcC----CEEEEEecchhcc-----------
Confidence 8999999999875432 22 2348899999999999999999999998653 6999999976642
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+.+....|+.+|+++..+++.++.++ .++||++++|+||++.|++..... . .
T Consensus 142 -----------------------~~~~~~~~Y~~sK~~~~~~~~~~~~~~-~~~gi~v~~i~pg~v~~~~~~~~~--~-~ 194 (238)
T PRK05786 142 -----------------------KASPDQLSYAVAKAGLAKAVEILASEL-LGRGIRVNGIAPTTISGDFEPERN--W-K 194 (238)
T ss_pred -----------------------cCCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCCCCchhh--h-h
Confidence 123456789999999999999999998 778999999999999997432110 0 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. .. .....+.+++++++.++++++++....+|.++..|+.
T Consensus 195 ~----~~-~~~~~~~~~~~va~~~~~~~~~~~~~~~g~~~~~~~~ 234 (238)
T PRK05786 195 K----LR-KLGDDMAPPEDFAKVIIWLLTDEADWVDGVVIPVDGG 234 (238)
T ss_pred h----hc-cccCCCCCHHHHHHHHHHHhcccccCccCCEEEECCc
Confidence 0 00 0112357999999999999988776789999988875
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-28 Score=219.17 Aligned_cols=220 Identities=20% Similarity=0.228 Sum_probs=169.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH-HHhcC---C
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT-FRRSG---R 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~-~~~~~---~ 122 (358)
++|||||+||||++++++|+++|+ +|++++|+..+. . ....+.++.++++|+++.+++++++++ +.+.+ +
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~-~v~~~~r~~~~~--~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGI-AVLGVARSRHPS--L---AAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCC-EEEEEecCcchh--h---hhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 699999999999999999999995 899999975431 1 122345788999999999999998776 54433 4
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|++|||+|.......+.+.+.+.++..+++|+.+++.+++.+++.+.++. .++||++||..+..
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~------------ 142 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAA--ERRILHISSGAARN------------ 142 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccC--CCEEEEEeChhhcC------------
Confidence 7999999999875444566778999999999999999999999999998754 47999999987763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh---
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--- 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~--- 279 (358)
+.+++..|+.+|++++++++.++.+ .+.||++++|+||+++|++...-....
T Consensus 143 -----------------------~~~~~~~Y~~sK~a~~~~~~~~~~~--~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~ 197 (243)
T PRK07023 143 -----------------------AYAGWSVYCATKAALDHHARAVALD--ANRALRIVSLAPGVVDTGMQATIRATDEER 197 (243)
T ss_pred -----------------------CCCCchHHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCccccHHHHHHHhccccc
Confidence 5567889999999999999999998 557999999999999998542100000
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
...........+..++.+|+++|+.++.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~va~~~~~~l~~ 229 (243)
T PRK07023 198 FPMRERFRELKASGALSTPEDAARRLIAYLLS 229 (243)
T ss_pred chHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 00111122233345678999999965544433
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=209.08 Aligned_cols=164 Identities=29% Similarity=0.418 Sum_probs=149.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC--hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRD--FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~--~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
|++|||||++|||++++++|+++|+++|++++|+ .+..+....+++..+.++.++++|+++.++++++++++.+.+++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999987899999999 66777777777777789999999999999999999999988899
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||+|... ...+.+.+.+.|++.+++|+.+++.+.++++| .. +++||++||..+..
T Consensus 81 ld~li~~ag~~~-~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~--~~----~g~iv~~sS~~~~~------------- 140 (167)
T PF00106_consen 81 LDILINNAGIFS-DGSLDDLSEEELERVFRVNLFGPFLLAKALLP--QG----GGKIVNISSIAGVR------------- 140 (167)
T ss_dssp ESEEEEECSCTT-SBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH--HT----TEEEEEEEEGGGTS-------------
T ss_pred cccccccccccc-ccccccccchhhhhccccccceeeeeeehhee--cc----ccceEEecchhhcc-------------
Confidence 999999999987 45677888999999999999999999999999 22 48999999999884
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF 251 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~ 251 (358)
+.+++..|+.||+|+.+|++++++|+
T Consensus 141 ----------------------~~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 141 ----------------------GSPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp ----------------------SSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 66889999999999999999999986
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-27 Score=212.95 Aligned_cols=236 Identities=21% Similarity=0.248 Sum_probs=188.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+||||++++||.+++++|+++|+ .|++++|+. +..+...+.+...+.++.++.+|+++.++++++++++.+.++++|+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDI 79 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence 58999999999999999999994 888888874 4444455555555567899999999999999999999888889999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||++|.... ..+.+.+.+.+++.+++|+.+++.+.+.+.+++.+.. .+++|++||..+..
T Consensus 80 vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------------- 140 (239)
T TIGR01830 80 LVNNAGITRD-NLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQR--SGRIINISSVVGLM---------------- 140 (239)
T ss_pred EEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEECCccccC----------------
Confidence 9999998643 2344667899999999999999999999999987654 37999999988764
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
+.+++..|+.+|+++..+++.++.++ ..+|++++.++||++.|++... ..... ....
T Consensus 141 -------------------g~~~~~~y~~~k~a~~~~~~~l~~~~-~~~g~~~~~i~pg~~~~~~~~~-~~~~~--~~~~ 197 (239)
T TIGR01830 141 -------------------GNAGQANYAASKAGVIGFTKSLAKEL-ASRNITVNAVAPGFIDTDMTDK-LSEKV--KKKI 197 (239)
T ss_pred -------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCCCChhhhh-cChHH--HHHH
Confidence 33567789999999999999999998 6779999999999998864322 11110 0011
Q ss_pred hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 287 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
....+..++.+++++++.+++++.+.....+|+++..++.
T Consensus 198 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 198 LSQIPLGRFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred HhcCCcCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 1122334567999999999999977666789999988764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-27 Score=209.54 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=162.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+++||||++|||+++++.|+++ + +|++++|+.. .+++|+++.+++++++++ ++++|+
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~-~vi~~~r~~~-----------------~~~~D~~~~~~~~~~~~~----~~~id~ 58 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-H-EVITAGRSSG-----------------DVQVDITDPASIRALFEK----VGKVDA 58 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-C-cEEEEecCCC-----------------ceEecCCChHHHHHHHHh----cCCCCE
Confidence 6999999999999999999998 4 8999998742 468999999999988775 468999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+. ++|+++||..+..
T Consensus 59 lv~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----g~iv~iss~~~~~---------------- 117 (199)
T PRK07578 59 VVSAAGKVHF-APLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDG----GSFTLTSGILSDE---------------- 117 (199)
T ss_pred EEECCCCCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CeEEEEcccccCC----------------
Confidence 9999997543 456677899999999999999999999999999753 6999999988763
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
+.+++..|+.+|+++.+|++.++.|+ ++||+|++|+||++.|++.... ..
T Consensus 118 -------------------~~~~~~~Y~~sK~a~~~~~~~la~e~--~~gi~v~~i~Pg~v~t~~~~~~------~~--- 167 (199)
T PRK07578 118 -------------------PIPGGASAATVNGALEGFVKAAALEL--PRGIRINVVSPTVLTESLEKYG------PF--- 167 (199)
T ss_pred -------------------CCCCchHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEcCCcccCchhhhh------hc---
Confidence 45678899999999999999999998 5699999999999998742110 00
Q ss_pred hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 287 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.+.....+|+++|+.+.++++. ..+|+.|.
T Consensus 168 ---~~~~~~~~~~~~a~~~~~~~~~---~~~g~~~~ 197 (199)
T PRK07578 168 ---FPGFEPVPAARVALAYVRSVEG---AQTGEVYK 197 (199)
T ss_pred ---CCCCCCCCHHHHHHHHHHHhcc---ceeeEEec
Confidence 1112457999999999999874 36777665
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-27 Score=213.63 Aligned_cols=205 Identities=20% Similarity=0.241 Sum_probs=167.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++++||||+||||++++++|+++|+ +|++++|+.+.++..... ..++.++++|+++.++++++++++.. .+|
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~---~~d 73 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQ----SANIFTLAFDVTDHPGTKAALSQLPF---IPE 73 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHh----cCCCeEEEeeCCCHHHHHHHHHhccc---CCC
Confidence 6899999999999999999999995 999999997666554332 24688999999999999999887642 479
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
++|||||..... ...+.+.+.|++++++|+.+++.+++++.|+|.+. ++||++||..+..
T Consensus 74 ~~i~~ag~~~~~-~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~iv~isS~~~~~--------------- 133 (240)
T PRK06101 74 LWIFNAGDCEYM-DDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCG----HRVVIVGSIASEL--------------- 133 (240)
T ss_pred EEEEcCcccccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC----CeEEEEechhhcc---------------
Confidence 999999875322 33356889999999999999999999999998653 6899999988764
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.++...|+.+|+++.+|++.++.|+ .+.||++++|+||++.|++...... .
T Consensus 134 --------------------~~~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~i~t~~~~~~~~------~- 185 (240)
T PRK06101 134 --------------------ALPRAEAYGASKAAVAYFARTLQLDL-RPKGIEVVTVFPGFVATPLTDKNTF------A- 185 (240)
T ss_pred --------------------CCCCCchhhHHHHHHHHHHHHHHHHH-HhcCceEEEEeCCcCCCCCcCCCCC------C-
Confidence 44567789999999999999999998 7789999999999999985433210 0
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.....+|+++++.++..+...
T Consensus 186 ------~~~~~~~~~~a~~i~~~i~~~ 206 (240)
T PRK06101 186 ------MPMIITVEQASQEIRAQLARG 206 (240)
T ss_pred ------CCcccCHHHHHHHHHHHHhcC
Confidence 012368999999999988764
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=204.14 Aligned_cols=180 Identities=24% Similarity=0.294 Sum_probs=160.2
Q ss_pred CCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh-cCC
Q 018331 45 KGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-SGR 122 (358)
Q Consensus 45 ~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~-~~~ 122 (358)
.|.+||||++ ||||.+++++|++.| +.|+++.|+.+....+... .++..+++|+++++++..+..++.+ .+|
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G-~~V~AtaR~~e~M~~L~~~-----~gl~~~kLDV~~~~~V~~v~~evr~~~~G 80 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNG-YLVYATARRLEPMAQLAIQ-----FGLKPYKLDVSKPEEVVTVSGEVRANPDG 80 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCC-eEEEEEccccchHhhHHHh-----hCCeeEEeccCChHHHHHHHHHHhhCCCC
Confidence 4578888887 899999999999999 6999999987665554432 3589999999999999999999988 689
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+|+||||..+.. +..+.+.+..++.|.+|++|.+.+++++...+.+. +|.|||+.|..++.
T Consensus 81 kld~L~NNAG~~C~~-Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~lika---KGtIVnvgSl~~~v------------ 144 (289)
T KOG1209|consen 81 KLDLLYNNAGQSCTF-PALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKA---KGTIVNVGSLAGVV------------ 144 (289)
T ss_pred ceEEEEcCCCCCccc-ccccCCHHHHHhhhccceeeeehHHHHHHHHHHHc---cceEEEecceeEEe------------
Confidence 999999999998664 55688999999999999999999999999766665 38999999999985
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+++-...|++||+|+..+++.|..|+ .+.||+|..+.||.|.|+
T Consensus 145 -----------------------pfpf~~iYsAsKAAihay~~tLrlEl-~PFgv~Vin~itGGv~T~ 188 (289)
T KOG1209|consen 145 -----------------------PFPFGSIYSASKAAIHAYARTLRLEL-KPFGVRVINAITGGVATD 188 (289)
T ss_pred -----------------------ccchhhhhhHHHHHHHHhhhhcEEee-eccccEEEEecccceecc
Confidence 77888899999999999999999999 999999999999999996
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-28 Score=209.01 Aligned_cols=239 Identities=16% Similarity=0.156 Sum_probs=187.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.++++|+||+|+|||..+++.+.+.+ ...+..+++....+ .....-..++.-..+..|++...-..++++..+++++.
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed-~e~~r~g~~r~~a~-~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~gk 82 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAED-DEALRYGVARLLAE-LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKGGK 82 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcc-hHHHHHhhhccccc-ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcCCc
Confidence 46789999999999999999999888 45555555443333 11111122344556668888888889999999999999
Q ss_pred ccEEEEcccccCCCCCC--CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKE--PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~--~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
.|++|||||...+-... +.-+.+.|++.+++|+++.+.+.+.++|.++++. ..+.+|||||.++..
T Consensus 83 r~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p-~~~~vVnvSS~aav~----------- 150 (253)
T KOG1204|consen 83 RDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSP-VNGNVVNVSSLAAVR----------- 150 (253)
T ss_pred eeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCC-ccCeEEEecchhhhc-----------
Confidence 99999999998643332 3567889999999999999999999999999885 358999999999884
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-----c
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-----H 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~-----~ 276 (358)
|+.+|..||.+|+|.++|.+.||.|- +.++++.++.||+|+|+|.... .
T Consensus 151 ------------------------p~~~wa~yc~~KaAr~m~f~~lA~EE--p~~v~vl~~aPGvvDT~mq~~ir~~~~~ 204 (253)
T KOG1204|consen 151 ------------------------PFSSWAAYCSSKAARNMYFMVLASEE--PFDVRVLNYAPGVVDTQMQVCIRETSRM 204 (253)
T ss_pred ------------------------cccHHHHhhhhHHHHHHHHHHHhhcC--ccceeEEEccCCcccchhHHHHhhccCC
Confidence 89999999999999999999999984 3799999999999999986442 2
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.|....+++.+ .-...+++|...++.+..|+.... +++|+|++|..
T Consensus 205 ~p~~l~~f~el--~~~~~ll~~~~~a~~l~~L~e~~~-f~sG~~vdy~D 250 (253)
T KOG1204|consen 205 TPADLKMFKEL--KESGQLLDPQVTAKVLAKLLEKGD-FVSGQHVDYYD 250 (253)
T ss_pred CHHHHHHHHHH--HhcCCcCChhhHHHHHHHHHHhcC-ccccccccccc
Confidence 22222222222 223568999999999999998765 78999998865
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=205.80 Aligned_cols=217 Identities=21% Similarity=0.252 Sum_probs=173.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|+++||||+|+||++++++|+++|+ .|++++|+.+..+.... ..+.++.+|+++.++++++++++.. +++|
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~------~~~~~~~~D~~~~~~v~~~~~~~~~--~~~d 72 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQA------LGAEALALDVADPASVAGLAWKLDG--EALD 72 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHh------ccceEEEecCCCHHHHHHHHHHhcC--CCCC
Confidence 5899999999999999999999995 89999999766554332 1356899999999999998877642 4799
Q ss_pred EEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 126 VLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 126 ~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
++|||+|.... .....+.+.++|+..+++|+.+++.++++++|.|.+. .+++|++||..+..+.
T Consensus 73 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~g~iv~isS~~~~~~~------------ 137 (222)
T PRK06953 73 AAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAA---GGVLAVLSSRMGSIGD------------ 137 (222)
T ss_pred EEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhcc---CCeEEEEcCccccccc------------
Confidence 99999998632 2234466889999999999999999999999998664 3799999998765411
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
.+......|+.+|++++.+++.++.++ +++++++|+||+++|++...
T Consensus 138 --------------------~~~~~~~~Y~~sK~a~~~~~~~~~~~~---~~i~v~~v~Pg~i~t~~~~~---------- 184 (222)
T PRK06953 138 --------------------ATGTTGWLYRASKAALNDALRAASLQA---RHATCIALHPGWVRTDMGGA---------- 184 (222)
T ss_pred --------------------ccCCCccccHHhHHHHHHHHHHHhhhc---cCcEEEEECCCeeecCCCCC----------
Confidence 011112369999999999999999886 58999999999999985422
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...+++++.+..++.++.......+|.|+++|+..
T Consensus 185 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (222)
T PRK06953 185 --------QAALDPAQSVAGMRRVIAQATRRDNGRFFQYDGVE 219 (222)
T ss_pred --------CCCCCHHHHHHHHHHHHHhcCcccCceEEeeCCcC
Confidence 12358899999999987776667899999999764
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=212.21 Aligned_cols=213 Identities=21% Similarity=0.230 Sum_probs=177.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.|++++|||||.|||++.|++||++| .+|++++|++++++.+.+++.+. +..++++.+|.++.+.+-+-+.+..+. .
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG-~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~-~ 125 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRG-FNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAG-L 125 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcC-C
Confidence 35999999999999999999999999 79999999999999999998764 567899999999998744333333332 2
Q ss_pred CccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 123 PLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 123 ~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
.+-+||||+|... .+..+.+.+...++.++.+|..+...+++.++|.|.+++ +|-|||++|.++..
T Consensus 126 ~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~--~G~IvnigS~ag~~----------- 192 (312)
T KOG1014|consen 126 DVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERK--KGIIVNIGSFAGLI----------- 192 (312)
T ss_pred ceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCC--CceEEEeccccccc-----------
Confidence 5778999999986 344555667678999999999999999999999999976 49999999999984
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.|.+..|+.||+.+..|+++|+.|+ +..||.|-+|.|+.|.|.|..-...
T Consensus 193 ------------------------p~p~~s~ysasK~~v~~~S~~L~~Ey-~~~gI~Vq~v~p~~VaTkm~~~~~~---- 243 (312)
T KOG1014|consen 193 ------------------------PTPLLSVYSASKAFVDFFSRCLQKEY-ESKGIFVQSVIPYLVATKMAKYRKP---- 243 (312)
T ss_pred ------------------------cChhHHHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEeehhheeccccccCCC----
Confidence 78999999999999999999999999 8889999999999999986533321
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhc
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVS 310 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~ 310 (358)
....++|+.-+...+.-+.
T Consensus 244 ----------sl~~ps~~tfaksal~tiG 262 (312)
T KOG1014|consen 244 ----------SLFVPSPETFAKSALNTIG 262 (312)
T ss_pred ----------CCcCcCHHHHHHHHHhhcC
Confidence 1234578888777777665
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=206.18 Aligned_cols=207 Identities=18% Similarity=0.232 Sum_probs=172.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++++++||||+|+||++++++|+++|+..|++++|+.++++. .+.++.++.+|+++.+++.++++.
T Consensus 2 ~~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~---- 70 (238)
T PRK08264 2 MDIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD-------LGPRVVPLQLDVTDPASVAAAAEA---- 70 (238)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh-------cCCceEEEEecCCCHHHHHHHHHh----
Confidence 457889999999999999999999999994389999998765443 345789999999999998887764
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+|||++|.......+.+.+.+.+++.+++|+.+++.+++++.+.+++.+ .+++|++||..+..
T Consensus 71 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~~v~~sS~~~~~---------- 138 (238)
T PRK08264 71 ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANG--GGAIVNVLSVLSWV---------- 138 (238)
T ss_pred cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcChhhcc----------
Confidence 457999999999844444566788999999999999999999999999998764 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|++++.+++.++.++ .+.||++++++||.++|++.....
T Consensus 139 -------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~v~pg~v~t~~~~~~~---- 188 (238)
T PRK08264 139 -------------------------NFPNLGTYSASKAAAWSLTQALRAEL-APQGTRVLGVHPGPIDTDMAAGLD---- 188 (238)
T ss_pred -------------------------CCCCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeCCcccccccccCC----
Confidence 44667889999999999999999998 778999999999999998532210
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
....+++++++.++..+...
T Consensus 189 ------------~~~~~~~~~a~~~~~~~~~~ 208 (238)
T PRK08264 189 ------------APKASPADVARQILDALEAG 208 (238)
T ss_pred ------------cCCCCHHHHHHHHHHHHhCC
Confidence 11468899999999888653
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=208.08 Aligned_cols=222 Identities=19% Similarity=0.145 Sum_probs=172.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||+||||++++++|+++|+ +|++++|+....+...+.....+.++.++.+|+++.+++.+++. +++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~i 74 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAE------WDV 74 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhc------CCC
Confidence 57899999999999999999999994 99999998876666655555455678999999999998877653 379
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... ....+.+.+.++..+++|+.+++.+++.+++.+.+.+. ++||++||..+..
T Consensus 75 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--~~iv~~SS~~~~~-------------- 137 (257)
T PRK09291 75 DVLLNNAGIGEA-GAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK--GKVVFTSSMAGLI-------------- 137 (257)
T ss_pred CEEEECCCcCCC-cCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC--ceEEEEcChhhcc--------------
Confidence 999999998754 35667889999999999999999999999999987653 7999999987763
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh---
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR--- 281 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~--- 281 (358)
+.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++..........
T Consensus 138 ---------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~~~~v~pg~~~t~~~~~~~~~~~~~~~ 195 (257)
T PRK09291 138 ---------------------TGPFTGAYCASKHALEAIAEAMHAEL-KPFGIQVATVNPGPYLTGFNDTMAETPKRWYD 195 (257)
T ss_pred ---------------------CCCCcchhHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccccchhhhhhhhhhhcc
Confidence 23456789999999999999999998 77899999999999998743211110100
Q ss_pred hhcchhH---HhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LLFPPFQ---KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~~~~~~---~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
....... ........++++++..++.++..+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 229 (257)
T PRK09291 196 PARNFTDPEDLAFPLEQFDPQEMIDAMVEVIPAD 229 (257)
T ss_pred hhhHHHhhhhhhccccCCCHHHHHHHHHHHhcCC
Confidence 0000000 011123468999999999887654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=202.23 Aligned_cols=221 Identities=24% Similarity=0.281 Sum_probs=174.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-CCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~~~i 124 (358)
|+++||||+|+||+++++.|+++|+ +|++++|+.+..+...+ ..+.++.+|+++.+++.++++.+... .+++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~ 75 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNS------LGFTGILLDLDDPESVERAADEVIALTDNRL 75 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHh------CCCeEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence 6899999999999999999999994 99999999866654422 24678999999999999999988764 4689
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|.+|||+|.... ....+.+.+.+++.+++|+.|++.+++.+++.+.+.+ .++||++||..+..
T Consensus 76 ~~ii~~ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~-------------- 138 (256)
T PRK08017 76 YGLFNNAGFGVY-GPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHG--EGRIVMTSSVMGLI-------------- 138 (256)
T ss_pred eEEEECCCCCCc-cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCEEEEEcCccccc--------------
Confidence 999999997543 3455778899999999999999999999999998765 37999999987663
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-hhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLL 283 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~~~~ 283 (358)
+.++...|+.+|++++.++++++.++ ...+|++++|+||++.|+....-.... ....
T Consensus 139 ---------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~ 196 (256)
T PRK08017 139 ---------------------STPGRGAYAASKYALEAWSDALRMEL-RHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPV 196 (256)
T ss_pred ---------------------CCCCccHHHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeCCCcccchhhcccchhhccch
Confidence 33566789999999999999999998 677999999999999987443211000 0000
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
... .......++|+|+++.+..+++....
T Consensus 197 ~~~--~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 197 ENP--GIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred hhh--HHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 000 11112358999999999999976644
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=203.16 Aligned_cols=200 Identities=19% Similarity=0.150 Sum_probs=148.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|+++||||+||||+++++.|+++|+ +|++++|+...... ... . ....++.+|+++.+++.+ .
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~--~~~--~-~~~~~~~~D~~~~~~~~~-------~ 76 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSE--SND--E-SPNEWIKWECGKEESLDK-------Q 76 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhh--hhc--c-CCCeEEEeeCCCHHHHHH-------h
Confidence 468899999999999999999999999995 99999998622111 111 1 123678899999987764 3
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... .+.+.++|++.+++|+.+++.++++++|.|.++.. .++.+++.+|..+..
T Consensus 77 ~~~iDilVnnAG~~~~----~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~--------- 143 (245)
T PRK12367 77 LASLDVLILNHGINPG----GRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ--------- 143 (245)
T ss_pred cCCCCEEEECCccCCc----CCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC---------
Confidence 4689999999997532 24578999999999999999999999999976321 123344445544431
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHH---HHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM---QEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~---~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+ +....|++||+|+..+. ++++.++ .+.+++|+.+.||+++|++. .
T Consensus 144 --------------------------~-~~~~~Y~aSKaal~~~~~l~~~l~~e~-~~~~i~v~~~~pg~~~t~~~-~-- 192 (245)
T PRK12367 144 --------------------------P-ALSPSYEISKRLIGQLVSLKKNLLDKN-ERKKLIIRKLILGPFRSELN-P-- 192 (245)
T ss_pred --------------------------C-CCCchhHHHHHHHHHHHHHHHHHHHhh-cccccEEEEecCCCcccccC-c--
Confidence 1 23557999999986543 4455555 67899999999999998741 0
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
...++|+++|+.+++++....
T Consensus 193 ----------------~~~~~~~~vA~~i~~~~~~~~ 213 (245)
T PRK12367 193 ----------------IGIMSADFVAKQILDQANLGL 213 (245)
T ss_pred ----------------cCCCCHHHHHHHHHHHHhcCC
Confidence 124689999999999997543
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=201.77 Aligned_cols=220 Identities=24% Similarity=0.318 Sum_probs=187.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.++|||||+|||++++.++...|+ .|..+.|+.+++..+.+.++-.. ..+.+..+|+.+.+++...++++.+.++.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga-~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~ 112 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGA-DVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGP 112 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccC-ceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCC
Confidence 6899999999999999999999996 99999999999999988886432 23778999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|.+|||||...+ +.+.+.+.+.++..+++|++|.++.+++.++.|++..- .|+|+.+||..+..
T Consensus 113 ~d~l~~cAG~~v~-g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~-~g~I~~vsS~~a~~------------- 177 (331)
T KOG1210|consen 113 IDNLFCCAGVAVP-GLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREH-LGRIILVSSQLAML------------- 177 (331)
T ss_pred cceEEEecCcccc-cccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhcccc-CcEEEEehhhhhhc-------------
Confidence 9999999999866 47789999999999999999999999999999998752 36999999999885
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--hhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PLFR 281 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~~~~ 281 (358)
+..++.+|+.+|+|+.+++.++++|+ .+.||.|..+.|+.+.||+.-++.. |+..
T Consensus 178 ----------------------~i~GysaYs~sK~alrgLa~~l~qE~-i~~~v~Vt~~~P~~~~tpGfE~En~tkP~~t 234 (331)
T KOG1210|consen 178 ----------------------GIYGYSAYSPSKFALRGLAEALRQEL-IKYGVHVTLYYPPDTLTPGFERENKTKPEET 234 (331)
T ss_pred ----------------------CcccccccccHHHHHHHHHHHHHHHH-hhcceEEEEEcCCCCCCCccccccccCchhe
Confidence 77899999999999999999999999 7779999999999999997655332 2222
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhh
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVV 309 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~ 309 (358)
..... ......++++|.+++.=+
T Consensus 235 ~ii~g-----~ss~~~~e~~a~~~~~~~ 257 (331)
T KOG1210|consen 235 KIIEG-----GSSVIKCEEMAKAIVKGM 257 (331)
T ss_pred eeecC-----CCCCcCHHHHHHHHHhHH
Confidence 11111 122468888888887644
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=203.68 Aligned_cols=229 Identities=21% Similarity=0.113 Sum_probs=161.8
Q ss_pred HHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCC
Q 018331 61 TAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 140 (358)
Q Consensus 61 ia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~ 140 (358)
++++|+++|+ +|++++|+..+.+ ...++++|+++.++++++++++. +++|+||||||....
T Consensus 1 ~a~~l~~~G~-~Vv~~~r~~~~~~-----------~~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~~---- 61 (241)
T PRK12428 1 TARLLRFLGA-RVIGVDRREPGMT-----------LDGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPGT---- 61 (241)
T ss_pred ChHHHHhCCC-EEEEEeCCcchhh-----------hhHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCCC----
Confidence 4789999995 9999999865432 12468899999999999988774 589999999997521
Q ss_pred CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCC
Q 018331 141 PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSS 220 (358)
Q Consensus 141 ~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (358)
+.+++.+++|+.+++.+++.++|+|.+. |+||++||..++... .. +.....+....+......
T Consensus 62 -----~~~~~~~~vN~~~~~~l~~~~~~~~~~~----g~Iv~isS~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~ 124 (241)
T PRK12428 62 -----APVELVARVNFLGLRHLTEALLPRMAPG----GAIVNVASLAGAEWP-QR-------LELHKALAATASFDEGAA 124 (241)
T ss_pred -----CCHHHhhhhchHHHHHHHHHHHHhccCC----cEEEEeCcHHhhccc-cc-------hHHHHhhhccchHHHHHH
Confidence 2478999999999999999999998653 799999999876311 00 000000000000000000
Q ss_pred CCCCCCCchhhhhHHhHHHHHHHHHHHH-HhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchh
Q 018331 221 MIDGGDFDGAKAYKDSKVCNMLTMQEFH-RRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSED 299 (358)
Q Consensus 221 ~~~~~~~~~~~~Y~~sK~al~~~~~~la-~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (358)
.....+.++...|+.||+++.+|++.++ .++ .+.||+||+|+||++.|++.............. ....+..++.+|+
T Consensus 125 ~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~-~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~-~~~~~~~~~~~pe 202 (241)
T PRK12428 125 WLAAHPVALATGYQLSKEALILWTMRQAQPWF-GARGIRVNCVAPGPVFTPILGDFRSMLGQERVD-SDAKRMGRPATAD 202 (241)
T ss_pred hhhccCCCcccHHHHHHHHHHHHHHHHHHHhh-hccCeEEEEeecCCccCcccccchhhhhhHhhh-hcccccCCCCCHH
Confidence 0001245677899999999999999999 888 778999999999999998654311100000000 0112345678999
Q ss_pred HHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 300 EAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 300 ~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
++|+.++|++++....++|+.+.+||..
T Consensus 203 ~va~~~~~l~s~~~~~~~G~~i~vdgg~ 230 (241)
T PRK12428 203 EQAAVLVFLCSDAARWINGVNLPVDGGL 230 (241)
T ss_pred HHHHHHHHHcChhhcCccCcEEEecCch
Confidence 9999999999888778999999999863
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=188.57 Aligned_cols=211 Identities=23% Similarity=0.287 Sum_probs=167.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|++|||||+|+||+++++.|+++ + .|++++|+.++.+...+.. ..+.++++|+++.+++.++++.+ +++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~----~~i 72 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAEL----PGATPFPVDLTDPEAIAAAVEQL----GRL 72 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHh----ccceEEecCCCCHHHHHHHHHhc----CCC
Confidence 478999999999999999999998 5 8999999976655444332 25788999999999988877653 479
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||++|.... ....+.+.+.|.+.+++|+.+++.+++.+++.+.++. +++|++||..+..
T Consensus 73 d~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~---~~~v~~ss~~~~~-------------- 134 (227)
T PRK08219 73 DVLVHNAGVADL-GPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH---GHVVFINSGAGLR-------------- 134 (227)
T ss_pred CEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC---CeEEEEcchHhcC--------------
Confidence 999999998643 3455678899999999999999999999999988764 6999999987763
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.+|++++.+++.++.++ ... |++++|+||.+.+++... ....
T Consensus 135 ---------------------~~~~~~~y~~~K~a~~~~~~~~~~~~-~~~-i~~~~i~pg~~~~~~~~~-~~~~----- 185 (227)
T PRK08219 135 ---------------------ANPGWGSYAASKFALRALADALREEE-PGN-VRVTSVHPGRTDTDMQRG-LVAQ----- 185 (227)
T ss_pred ---------------------cCCCCchHHHHHHHHHHHHHHHHHHh-cCC-ceEEEEecCCccchHhhh-hhhh-----
Confidence 33456789999999999999999887 444 999999999998874321 1100
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.....+..++++++|+++.++++++.+.
T Consensus 186 -~~~~~~~~~~~~~~dva~~~~~~l~~~~ 213 (227)
T PRK08219 186 -EGGEYDPERYLRPETVAKAVRFAVDAPP 213 (227)
T ss_pred -hccccCCCCCCCHHHHHHHHHHHHcCCC
Confidence 0011123457899999999999997653
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-22 Score=194.67 Aligned_cols=198 Identities=17% Similarity=0.167 Sum_probs=149.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|+++||||+||||+++++.|+++|+ +|++++|+.++++.... .....+..+.+|+++.+++.+.+
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~---~~~~~v~~v~~Dvsd~~~v~~~l------- 243 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEIN---GEDLPVKTLHWQVGQEAALAELL------- 243 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHh---hcCCCeEEEEeeCCCHHHHHHHh-------
Confidence 57899999999999999999999999995 99999998755443221 12234678899999998876543
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC--CCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~--~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|++|||||.... .+.+.+++++++++|+.|++.++++++|.|++++. .++.+|++|+ ++.
T Consensus 244 ~~IDiLInnAGi~~~----~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~~---------- 308 (406)
T PRK07424 244 EKVDILIINHGINVH----GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AEV---------- 308 (406)
T ss_pred CCCCEEEECCCcCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-ccc----------
Confidence 479999999997633 25688999999999999999999999999987642 1234566554 322
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
..+....|++||+|+..++. +.++. .++.+..+.||++.|++. .
T Consensus 309 --------------------------~~~~~~~Y~ASKaAl~~l~~-l~~~~---~~~~I~~i~~gp~~t~~~-~----- 352 (406)
T PRK07424 309 --------------------------NPAFSPLYELSKRALGDLVT-LRRLD---APCVVRKLILGPFKSNLN-P----- 352 (406)
T ss_pred --------------------------cCCCchHHHHHHHHHHHHHH-HHHhC---CCCceEEEEeCCCcCCCC-c-----
Confidence 11235679999999999974 44432 467777888999988631 0
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
...++|+++|+.+++++.....
T Consensus 353 -------------~~~~spe~vA~~il~~i~~~~~ 374 (406)
T PRK07424 353 -------------IGVMSADWVAKQILKLAKRDFR 374 (406)
T ss_pred -------------CCCCCHHHHHHHHHHHHHCCCC
Confidence 1346999999999999976543
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-22 Score=175.33 Aligned_cols=239 Identities=25% Similarity=0.315 Sum_probs=184.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC----cEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga----~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
-.|++||||+++|||.+++++|++... .++++++|+-++++.+...+.+. ..++.++.+|+++..++.++..
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 368999999999999999999998763 25888999999999888777654 3468999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCC--------------------------CCCCCHHhHHhhhhhhhhHHHHHHHHHHHH
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAK--------------------------EPTFTAEGFELSVGTNHLGHFLLSRLLLDD 169 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~--------------------------~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~ 169 (358)
++.++|+++|.|+.|||++..++. ....+.++...+|+.||+|++.+.+.+.|.
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 999999999999999998754331 112467789999999999999999999999
Q ss_pred HhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHH
Q 018331 170 LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHR 249 (358)
Q Consensus 170 l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~ 249 (358)
+..+.. ..+|++||..+.. +..+++|+. -..+...|..||.+++.+.-.+.+
T Consensus 162 l~~~~~--~~lvwtSS~~a~k--------k~lsleD~q------------------~~kg~~pY~sSKrl~DlLh~A~~~ 213 (341)
T KOG1478|consen 162 LCHSDN--PQLVWTSSRMARK--------KNLSLEDFQ------------------HSKGKEPYSSSKRLTDLLHVALNR 213 (341)
T ss_pred hhcCCC--CeEEEEeeccccc--------ccCCHHHHh------------------hhcCCCCcchhHHHHHHHHHHHhc
Confidence 988764 5999999999874 444555542 234667899999999999888888
Q ss_pred hhcccCCcEEEEecCCcccCCcccccch-hhhhhhc--c-hhHHhhh--cCccchhHHhhhhhhhhcCC
Q 018331 250 RFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLF--P-PFQKYIT--KGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 250 e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~~~~~~~--~-~~~~~~~--~~~~~~~~~a~~i~~l~~~~ 312 (358)
.+ .+-|+..+.|+||...|. ...... ++.-... . ...+... +...+|-.+|.+.+++....
T Consensus 214 ~~-~~~g~~qyvv~pg~~tt~-~~~~~l~~~~~~~~~~~fyl~rllgspwh~id~y~aa~A~vw~~l~~ 280 (341)
T KOG1478|consen 214 NF-KPLGINQYVVQPGIFTTN-SFSEYLNPFTYFGMLCGFYLARLLGSPWHNIDPYKAANAPVWVTLAN 280 (341)
T ss_pred cc-cccchhhhcccCceeecc-hhhhhhhhHHHHHHHHHHHHHHHhcCcccccCccccccchhhhhhcC
Confidence 87 778999999999998665 434332 2211111 1 1112221 12368888899988887443
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.3e-22 Score=222.96 Aligned_cols=182 Identities=20% Similarity=0.153 Sum_probs=154.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecCh------------------------------------------
Q 018331 44 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDF------------------------------------------ 80 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~------------------------------------------ 80 (358)
+++++|||||++|||++++++|+++ |+ +|++++|+.
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga-~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~ 2074 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQA-HFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVR 2074 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCC-EEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhccc
Confidence 5899999999999999999999998 55 999999982
Q ss_pred -----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhh
Q 018331 81 -----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 155 (358)
Q Consensus 81 -----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN 155 (358)
.+.....+.+...+.++.++.||++|.++++++++++.+. ++||+||||||.... ..+.+.+.++|++.|++|
T Consensus 2075 ~~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~-~~i~~~t~e~f~~v~~~n 2152 (2582)
T TIGR02813 2075 PVLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLAD-KHIQDKTLEEFNAVYGTK 2152 (2582)
T ss_pred ccchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCC-CCcccCCHHHHHHHHHHH
Confidence 0111122333445678899999999999999999999877 589999999998755 467788999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHH
Q 018331 156 HLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKD 235 (358)
Q Consensus 156 ~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 235 (358)
+.|.+.+++++.+.+. ++||++||..+.. +.+++..|+.
T Consensus 2153 v~G~~~Ll~al~~~~~------~~IV~~SSvag~~-----------------------------------G~~gqs~Yaa 2191 (2582)
T TIGR02813 2153 VDGLLSLLAALNAENI------KLLALFSSAAGFY-----------------------------------GNTGQSDYAM 2191 (2582)
T ss_pred HHHHHHHHHHHHHhCC------CeEEEEechhhcC-----------------------------------CCCCcHHHHH
Confidence 9999999999876543 4899999999875 4567889999
Q ss_pred hHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 236 SKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 236 sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+|.+++.+++.++.++ .+++|++|+||+++|+|.
T Consensus 2192 AkaaL~~la~~la~~~---~~irV~sI~wG~wdtgm~ 2225 (2582)
T TIGR02813 2192 SNDILNKAALQLKALN---PSAKVMSFNWGPWDGGMV 2225 (2582)
T ss_pred HHHHHHHHHHHHHHHc---CCcEEEEEECCeecCCcc
Confidence 9999999999999986 469999999999999765
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-21 Score=164.47 Aligned_cols=176 Identities=22% Similarity=0.248 Sum_probs=142.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH---HHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA---AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~---~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
|+++||||+++||+++++.|+++|+..|++++|+....+.. .+.++..+.++.++.+|+++.++++++++++...++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 57999999999999999999999965788888875433221 234444456788999999999999999999988889
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||+|.... ..+.+.+.++++..+++|+.+++.+.+++.+ .. .+++|++||..+..
T Consensus 81 ~id~li~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~ii~~ss~~~~~------------ 141 (180)
T smart00822 81 PLRGVIHAAGVLDD-GLLANLTPERFAAVLAPKVDGAWNLHELTRD----LP--LDFFVLFSSVAGVL------------ 141 (180)
T ss_pred CeeEEEEccccCCc-cccccCCHHHHHHhhchHhHHHHHHHHHhcc----CC--cceEEEEccHHHhc------------
Confidence 99999999998643 3456778899999999999999999998843 21 36999999987764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
+.+++..|+.+|+++..+++.++. .|+.+.+++||++.
T Consensus 142 -----------------------~~~~~~~y~~sk~~~~~~~~~~~~-----~~~~~~~~~~g~~~ 179 (180)
T smart00822 142 -----------------------GNPGQANYAAANAFLDALAAHRRA-----RGLPATSINWGAWA 179 (180)
T ss_pred -----------------------CCCCchhhHHHHHHHHHHHHHHHh-----cCCceEEEeecccc
Confidence 335677899999999888876643 47889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=177.05 Aligned_cols=246 Identities=17% Similarity=0.124 Sum_probs=173.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH--HHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~--~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++++||||||.||.+++++|+++| |+|+.+.|++++.+. ..+.++....++..+.+|++++++++.+++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rG-Y~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~------ 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRG-YTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID------ 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCC-CEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh------
Confidence 67899999999999999999999999 899999999877544 466777777889999999999999999888
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+.|+|+|.|..+.... .+ .-.+.+...+.|+.++++++...- . -.|||++||.++......+
T Consensus 78 -gcdgVfH~Asp~~~~~----~~--~e~~li~pav~Gt~nVL~ac~~~~---s--VkrvV~TSS~aAv~~~~~~------ 139 (327)
T KOG1502|consen 78 -GCDGVFHTASPVDFDL----ED--PEKELIDPAVKGTKNVLEACKKTK---S--VKRVVYTSSTAAVRYNGPN------ 139 (327)
T ss_pred -CCCEEEEeCccCCCCC----CC--cHHhhhhHHHHHHHHHHHHHhccC---C--cceEEEeccHHHhccCCcC------
Confidence 6999999999874421 11 223678899999999999997553 1 2499999999887522010
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh---
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--- 278 (358)
+ +-...+++..+.+.+.+.. ....|..||.. +...|.++..+.|+..++|+||.|-+|.+......
T Consensus 140 -~----~~~~vvdE~~wsd~~~~~~--~~~~Y~~sK~l----AEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l~~s~~ 208 (327)
T KOG1502|consen 140 -I----GENSVVDEESWSDLDFCRC--KKLWYALSKTL----AEKAAWEFAKENGLDLVTINPGLVFGPGLQPSLNSSLN 208 (327)
T ss_pred -C----CCCcccccccCCcHHHHHh--hHHHHHHHHHH----HHHHHHHHHHhCCccEEEecCCceECCCcccccchhHH
Confidence 1 1111122222222211111 12569999988 45555555344589999999999999987662211
Q ss_pred -hhhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....+..... ......++.++|+|.+.+++++.++. +|+|+......
T Consensus 209 ~~l~~i~G~~~~~~n~~~~~VdVrDVA~AHv~a~E~~~a--~GRyic~~~~~ 258 (327)
T KOG1502|consen 209 ALLKLIKGLAETYPNFWLAFVDVRDVALAHVLALEKPSA--KGRYICVGEVV 258 (327)
T ss_pred HHHHHHhcccccCCCCceeeEeHHHHHHHHHHHHcCccc--CceEEEecCcc
Confidence 1111111011 11112368999999999999999876 79999877654
|
|
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=178.08 Aligned_cols=208 Identities=17% Similarity=0.188 Sum_probs=151.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++||++|||||+|+||+++++.|+++| ...|++++|+..........+. ..++.++.+|+++.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--~~~~~~v~~Dl~d~~~l~~~~~------ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--APCLRFFIGDVRDKERLTRALR------ 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHh------
Confidence 468999999999999999999999986 2478888888655444333332 2468899999999999888765
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+|||+||.... ...+.+ .+..+++|+.+++++++++.+. + .++||++||....
T Consensus 74 -~iD~Vih~Ag~~~~--~~~~~~---~~~~~~~Nv~g~~~ll~aa~~~----~--~~~iV~~SS~~~~------------ 129 (324)
T TIGR03589 74 -GVDYVVHAAALKQV--PAAEYN---PFECIRTNINGAQNVIDAAIDN----G--VKRVVALSTDKAA------------ 129 (324)
T ss_pred -cCCEEEECcccCCC--chhhcC---HHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeCCCCC------------
Confidence 58999999997532 111223 3468999999999999999763 1 2599999996433
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+...|+.||++.+.+++.++.+. ...|+++++++||.+.++.. ...+.+.
T Consensus 130 --------------------------~p~~~Y~~sK~~~E~l~~~~~~~~-~~~gi~~~~lR~g~v~G~~~--~~i~~~~ 180 (324)
T TIGR03589 130 --------------------------NPINLYGATKLASDKLFVAANNIS-GSKGTRFSVVRYGNVVGSRG--SVVPFFK 180 (324)
T ss_pred --------------------------CCCCHHHHHHHHHHHHHHHHHhhc-cccCcEEEEEeecceeCCCC--CcHHHHH
Confidence 123569999999999999988776 66799999999999999742 2222111
Q ss_pred hhc-------chhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 282 LLF-------PPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 282 ~~~-------~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
... ........+.++.++|++++++.++..
T Consensus 181 ~~~~~~~~~~~i~~~~~~r~~i~v~D~a~a~~~al~~ 217 (324)
T TIGR03589 181 SLKEEGVTELPITDPRMTRFWITLEQGVNFVLKSLER 217 (324)
T ss_pred HHHHhCCCCeeeCCCCceEeeEEHHHHHHHHHHHHhh
Confidence 110 000000112368999999999999865
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=184.02 Aligned_cols=211 Identities=16% Similarity=0.151 Sum_probs=152.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC---------CCCceEEEEecCCCHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------AKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~---------~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
.+||++|||||+|+||++++++|+++| +.|++++|+...++.....+.. ...++.++.+|+++.+++.+.
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G-~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLG-FRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 578999999999999999999999999 5999999998777666554422 123588999999999887654
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
++++|+||||+|.... ...++...+++|+.|..++++++... + .++||++||.++...
T Consensus 157 -------LggiDiVVn~AG~~~~-------~v~d~~~~~~VN~~Gt~nLl~Aa~~a----g--VgRIV~VSSiga~~~-- 214 (576)
T PLN03209 157 -------LGNASVVICCIGASEK-------EVFDVTGPYRIDYLATKNLVDAATVA----K--VNHFILVTSLGTNKV-- 214 (576)
T ss_pred -------hcCCCEEEEccccccc-------cccchhhHHHHHHHHHHHHHHHHHHh----C--CCEEEEEccchhccc--
Confidence 3479999999997532 12246778899999999999988654 1 269999999875310
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.+. ..|. +|+++..+.+.+..++ ...||++++|+||++.|++..
T Consensus 215 --------------------------------g~p~-~~~~-sk~~~~~~KraaE~~L-~~sGIrvTIVRPG~L~tp~d~ 259 (576)
T PLN03209 215 --------------------------------GFPA-AILN-LFWGVLCWKRKAEEAL-IASGLPYTIVRPGGMERPTDA 259 (576)
T ss_pred --------------------------------Cccc-cchh-hHHHHHHHHHHHHHHH-HHcCCCEEEEECCeecCCccc
Confidence 1111 1233 6777777777787777 667999999999999887332
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.... ..+..........+..+.+|+|+.++|+++++..
T Consensus 260 ~~~t---~~v~~~~~d~~~gr~isreDVA~vVvfLasd~~a 297 (576)
T PLN03209 260 YKET---HNLTLSEEDTLFGGQVSNLQVAELMACMAKNRRL 297 (576)
T ss_pred cccc---cceeeccccccCCCccCHHHHHHHHHHHHcCchh
Confidence 1100 0000001112234668999999999999997654
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.2e-20 Score=172.85 Aligned_cols=238 Identities=18% Similarity=0.139 Sum_probs=160.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc--CCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~--~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++|++|||||+|+||++++++|+++| +.|+++.|+....+....... ....++.++.+|+++.+++.++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------ 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRG-YTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAID------ 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHc------
Confidence 47899999999999999999999999 589888887654433322221 123468899999999998888775
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+||||||.... ..+.+.+...+++|+.+++.+++++.+.+. .++||++||..++.+......+.
T Consensus 77 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~-----~~~iv~~SS~~~~~~~~~~~~~~-- 143 (325)
T PLN02989 77 -GCETVFHTASPVAI-----TVKTDPQVELINPAVNGTINVLRTCTKVSS-----VKRVILTSSMAAVLAPETKLGPN-- 143 (325)
T ss_pred -CCCEEEEeCCCCCC-----CCCCChHHHHHHHHHHHHHHHHHHHHHcCC-----ceEEEEecchhheecCCccCCCC--
Confidence 58999999996532 223455788999999999999999987532 25999999987664211000000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCc------hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFD------GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
...++..+.. ....|+.||.+.+.+++.++++. |+.+++++|+.+.+|+....
T Consensus 144 -----------------~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~~~ 202 (325)
T PLN02989 144 -----------------DVVDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN----EIDLIVLNPGLVTGPILQPT 202 (325)
T ss_pred -----------------CccCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc----CCeEEEEcCCceeCCCCCCC
Confidence 0011111111 13569999999888888877654 89999999999999865432
Q ss_pred ch---hhhhhhc---chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 276 HI---PLFRLLF---PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 276 ~~---~~~~~~~---~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. .+..... .++. ...+.++.++|+|++++.++..+.. .|.|. .++.
T Consensus 203 ~~~~~~~i~~~~~~~~~~~-~~~r~~i~v~Dva~a~~~~l~~~~~--~~~~n-i~~~ 255 (325)
T PLN02989 203 LNFSVAVIVELMKGKNPFN-TTHHRFVDVRDVALAHVKALETPSA--NGRYI-IDGP 255 (325)
T ss_pred CCchHHHHHHHHcCCCCCC-CcCcCeeEHHHHHHHHHHHhcCccc--CceEE-EecC
Confidence 11 1111100 0110 1113467799999999999876532 46554 3443
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-19 Score=165.79 Aligned_cols=236 Identities=14% Similarity=0.072 Sum_probs=156.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++|++|||||+|+||++++++|+++| +.|+++.|+.. ........+...+.++.++.+|+++.+++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G-~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~------ 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRG-YTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALK------ 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHc------
Confidence 46899999999999999999999999 69999888632 2222233333224578899999999998876654
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
..|.++|.++.... . ...++.++++|+.|++++++++.+.+. .++||++||..+.... .+...
T Consensus 78 -~~d~v~~~~~~~~~------~-~~~~~~~~~~nv~gt~~ll~aa~~~~~-----v~riV~~SS~~a~~~~----~~~~~ 140 (297)
T PLN02583 78 -GCSGLFCCFDPPSD------Y-PSYDEKMVDVEVRAAHNVLEACAQTDT-----IEKVVFTSSLTAVIWR----DDNIS 140 (297)
T ss_pred -CCCEEEEeCccCCc------c-cccHHHHHHHHHHHHHHHHHHHHhcCC-----ccEEEEecchHheecc----cccCC
Confidence 68899987654311 1 124678999999999999999987642 1599999998765310 00000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCc------hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFD------GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
.. ...++....+ ....|+.||...+.++..++++ .|+.+++|+||.|.+|.....
T Consensus 141 ~~---------------~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~----~gi~~v~lrp~~v~Gp~~~~~ 201 (297)
T PLN02583 141 TQ---------------KDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMD----RGVNMVSINAGLLMGPSLTQH 201 (297)
T ss_pred CC---------------CCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHH----hCCcEEEEcCCcccCCCCCCc
Confidence 00 0011111111 1126999999988888777654 389999999999999865332
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. +......... ......++.++|+|++++.++..+.. .|.|+.....
T Consensus 202 ~-~~~~~~~~~~-~~~~~~~v~V~Dva~a~~~al~~~~~--~~r~~~~~~~ 248 (297)
T PLN02583 202 N-PYLKGAAQMY-ENGVLVTVDVNFLVDAHIRAFEDVSS--YGRYLCFNHI 248 (297)
T ss_pred h-hhhcCCcccC-cccCcceEEHHHHHHHHHHHhcCccc--CCcEEEecCC
Confidence 1 1111000000 01112478999999999999986643 6788776553
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=172.00 Aligned_cols=229 Identities=18% Similarity=0.129 Sum_probs=156.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||+|+||+++++.|+++| +.|++++|+..........+. ...++.++.+|+++.+++.+++++.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~----- 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELG-AEVYGYSLDPPTSPNLFELLN-LAKKIEDHFGDIRDAAKLRKAIAEF----- 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCC-CEEEEEeCCCccchhHHHHHh-hcCCceEEEccCCCHHHHHHHHhhc-----
Confidence 468999999999999999999999999 589999987654333322222 1246778999999999998888853
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+|||+||.... ..+.+++...+++|+.+++.+++++... .. .+++|++||...+... ...
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~N~~g~~~ll~a~~~~---~~--~~~iv~~SS~~vyg~~-~~~------ 137 (349)
T TIGR02622 75 KPEIVFHLAAQPLV-----RKSYADPLETFETNVMGTVNLLEAIRAI---GS--VKAVVNVTSDKCYRND-EWV------ 137 (349)
T ss_pred CCCEEEECCccccc-----ccchhCHHHHHHHhHHHHHHHHHHHHhc---CC--CCEEEEEechhhhCCC-CCC------
Confidence 58999999996422 2244567788999999999999987432 11 2599999997655210 000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc---CCcEEEEecCCcccCCccccc--ch
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTGLFRE--HI 277 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~---~gI~v~~v~PG~v~t~~~~~~--~~ 277 (358)
.+..+..+..+...|+.||.+.+.+++.++.++... .|+++++++||.+.+++.... ..
T Consensus 138 ----------------~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~~~ 201 (349)
T TIGR02622 138 ----------------WGYRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAEDRLI 201 (349)
T ss_pred ----------------CCCccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchhhhhh
Confidence 011122233456689999999999999998876222 499999999999999853211 11
Q ss_pred h-hhhhhcc-----hhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 278 P-LFRLLFP-----PFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 278 ~-~~~~~~~-----~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
+ +...... .......+.++-.+|++++++.++..
T Consensus 202 ~~~~~~~~~g~~~~~~~g~~~rd~i~v~D~a~a~~~~~~~ 241 (349)
T TIGR02622 202 PDVIRAFSSNKIVIIRNPDATRPWQHVLEPLSGYLLLAEK 241 (349)
T ss_pred HHHHHHHhcCCCeEECCCCcccceeeHHHHHHHHHHHHHH
Confidence 1 1111110 00001122357888999999887753
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.8e-19 Score=165.62 Aligned_cols=241 Identities=18% Similarity=0.122 Sum_probs=154.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc--CCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~--~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+||++|||||+|+||++++++|+++| +.|+++.|+....+....... ....++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~----- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRG-YTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIE----- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHh-----
Confidence 468899999999999999999999999 699988888654443332222 123468899999999998888776
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC-CCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT-NTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~-~~~~~~~~~ 199 (358)
.+|+|||+|+..... ..+.....+++|+.++..+++++.... + ..+||++||...+. +..... +
T Consensus 77 --~~d~vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~~~~~~~---~--v~rvV~~SS~~~~~~~~~~~~-~- 141 (322)
T PLN02986 77 --GCDAVFHTASPVFFT------VKDPQTELIDPALKGTINVLNTCKETP---S--VKRVILTSSTAAVLFRQPPIE-A- 141 (322)
T ss_pred --CCCEEEEeCCCcCCC------CCCchhhhhHHHHHHHHHHHHHHHhcC---C--ccEEEEecchhheecCCccCC-C-
Confidence 589999999975221 112235678999999999998875421 1 25999999987642 110000 0
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
...++ +..... ..........|+.||.+.+.+++.+.++. |+.+++++|+.+.+|.......
T Consensus 142 ~~~~~----------E~~~~~--p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~~~~~~~ 205 (322)
T PLN02986 142 NDVVD----------ETFFSD--PSLCRETKNWYPLSKILAENAAWEFAKDN----GIDMVVLNPGFICGPLLQPTLNFS 205 (322)
T ss_pred CCCcC----------cccCCC--hHHhhccccchHHHHHHHHHHHHHHHHHh----CCeEEEEcccceeCCCCCCCCCcc
Confidence 00000 000000 00000123579999999888877776553 8999999999999986532211
Q ss_pred -hhhhhh-cc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 278 -PLFRLL-FP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 278 -~~~~~~-~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
...... .. .........++.++|+|++++.++..+.. .|.|..
T Consensus 206 ~~~~~~~~~g~~~~~~~~~~~v~v~Dva~a~~~al~~~~~--~~~yni 251 (322)
T PLN02986 206 VELIVDFINGKNLFNNRFYRFVDVRDVALAHIKALETPSA--NGRYII 251 (322)
T ss_pred HHHHHHHHcCCCCCCCcCcceeEHHHHHHHHHHHhcCccc--CCcEEE
Confidence 000000 00 00001112478999999999999987643 455554
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.4e-18 Score=161.24 Aligned_cols=223 Identities=17% Similarity=0.093 Sum_probs=155.0
Q ss_pred CCCCeEEEEcCCCchHHH--HHHHHHhCCCcEEEEEecChHHH------------HHHHHHhcCCCCceEEEEecCCCHH
Q 018331 43 LRKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLKA------------ERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 43 l~~k~~lITGas~gIG~a--ia~~La~~Ga~~Vi~~~r~~~~~------------~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
..+|++|||||++|||.+ +++.| +.|+ .|+++++..... +...+.++..+..+..+.||+++.+
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA-~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E 116 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGA-DTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDE 116 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCC-eEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHH
Confidence 457999999999999999 89999 9997 777776432111 1233334444556788999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCC----------------CC-----------------CCCHHhHHhhhhhh
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAK----------------EP-----------------TFTAEGFELSVGTN 155 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~----------------~~-----------------~~~~~~~~~~~~vN 155 (358)
+++++++++.+.+|+||+||||+|......+ +. ..+.++++.++ +
T Consensus 117 ~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~Tv--~ 194 (398)
T PRK13656 117 IKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIADTV--K 194 (398)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHHHH--H
Confidence 9999999999999999999999997632110 10 13344444443 3
Q ss_pred hhHH---HHH--HHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh
Q 018331 156 HLGH---FLL--SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA 230 (358)
Q Consensus 156 ~~~~---~~l--~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (358)
+.|. ... .+...+.|.+ ++++|-.|+..... .++.+
T Consensus 195 vMggedw~~Wi~al~~a~lla~----g~~~va~TY~G~~~-----------------------------------t~p~Y 235 (398)
T PRK13656 195 VMGGEDWELWIDALDEAGVLAE----GAKTVAYSYIGPEL-----------------------------------THPIY 235 (398)
T ss_pred hhccchHHHHHHHHHhcccccC----CcEEEEEecCCcce-----------------------------------eeccc
Confidence 3333 222 3444444543 47999999987663 33444
Q ss_pred --hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhh
Q 018331 231 --KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQV 308 (358)
Q Consensus 231 --~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l 308 (358)
..-|.+|++|+.-++.|+.++ ++.||++|++.+|++.|. .....|.+......+.+..+. .-+=+.|.+.+..|
T Consensus 236 ~~g~mG~AKa~LE~~~r~La~~L-~~~giran~i~~g~~~T~--Ass~Ip~~~ly~~~l~kvmk~-~g~he~~ieq~~rl 311 (398)
T PRK13656 236 WDGTIGKAKKDLDRTALALNEKL-AAKGGDAYVSVLKAVVTQ--ASSAIPVMPLYISLLFKVMKE-KGTHEGCIEQIYRL 311 (398)
T ss_pred CCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccch--hhhcCCCcHHHHHHHHHHHHh-cCCCCChHHHHHHH
Confidence 367999999999999999999 778999999999999995 344445444444444444322 22557788888887
Q ss_pred hcCC
Q 018331 309 VSDP 312 (358)
Q Consensus 309 ~~~~ 312 (358)
..+.
T Consensus 312 ~~~~ 315 (398)
T PRK13656 312 FSER 315 (398)
T ss_pred HHHh
Confidence 7643
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-18 Score=163.65 Aligned_cols=247 Identities=16% Similarity=0.135 Sum_probs=157.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.++++|||||+|+||++++++|+++| +.|++++|+....+.....+.. ..++.++.+|+++.+++.++++ .
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~-------~ 79 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRG-YTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAVK-------G 79 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHHc-------C
Confidence 56689999999999999999999999 5999989987655554444432 3578899999999998877764 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhH--HhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGF--ELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~--~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+|+|||+|+...........+++.+ ...+++|+.++..+++++.+... .++||++||...+......+.+..+
T Consensus 80 ~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~-----~~~~v~~SS~~vyg~~~~~~~~~~~ 154 (353)
T PLN02896 80 CDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKT-----VKRVVFTSSISTLTAKDSNGRWRAV 154 (353)
T ss_pred CCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCC-----ccEEEEEechhhccccccCCCCCCc
Confidence 8999999998643211112233333 35667788999999998876531 2599999998765321110000000
Q ss_pred CccccccccccCCCCCCCCCCC-CCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMID-GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+++....+.++ ..+.+....|+.||.+.+.+++.++++. |+.+++++|+.+.+|..........
T Consensus 155 -----------~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~~~~ 219 (353)
T PLN02896 155 -----------VDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN----GIDLVSVITTTVAGPFLTPSVPSSI 219 (353)
T ss_pred -----------cCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc----CCeEEEEcCCcccCCCcCCCCCchH
Confidence 00000000000 0011234579999999988888887664 8999999999999986543221111
Q ss_pred hhhcchh----HHh----------hhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 281 RLLFPPF----QKY----------ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 281 ~~~~~~~----~~~----------~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
......+ ... ....++.++|+|++++.++..+. ..|.|+
T Consensus 220 ~~~~~~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~--~~~~~~ 272 (353)
T PLN02896 220 QVLLSPITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTK--AEGRYI 272 (353)
T ss_pred HHHHHHhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCC--cCccEE
Confidence 1111000 000 01246899999999999987543 245554
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-18 Score=164.81 Aligned_cols=236 Identities=18% Similarity=0.142 Sum_probs=156.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH-HHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER-AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~-~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++|++|||||+|+||++++++|+++| +.|++++|+.+.... ....+.....++.++.+|+++.+++.++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 80 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERG-YTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAID------ 80 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHh------
Confidence 568899999999999999999999999 699999997654221 122332223468889999999998887776
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+|||+|+... +.+...+++|+.++..+++++.... ..+||++||..+.++..... +..
T Consensus 81 -~~d~Vih~A~~~~----------~~~~~~~~~nv~gt~~ll~aa~~~~------v~r~V~~SS~~avyg~~~~~-~~~- 141 (342)
T PLN02214 81 -GCDGVFHTASPVT----------DDPEQMVEPAVNGAKFVINAAAEAK------VKRVVITSSIGAVYMDPNRD-PEA- 141 (342)
T ss_pred -cCCEEEEecCCCC----------CCHHHHHHHHHHHHHHHHHHHHhcC------CCEEEEeccceeeeccCCCC-CCc-
Confidence 5899999998641 1346779999999999999986531 14999999976554221100 000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 277 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---- 277 (358)
.++ +..+.+ ...+......|+.||.+.+.+++.++++. |+.+++++|+.|.+|.......
T Consensus 142 ~~~----------E~~~~~--~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----g~~~v~lRp~~vyGp~~~~~~~~~~~ 205 (342)
T PLN02214 142 VVD----------ESCWSD--LDFCKNTKNWYCYGKMVAEQAAWETAKEK----GVDLVVLNPVLVLGPPLQPTINASLY 205 (342)
T ss_pred ccC----------cccCCC--hhhccccccHHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCCCCCCchHH
Confidence 000 000000 00011234579999999988888877664 8999999999999986532211
Q ss_pred hhhhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 278 PLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 278 ~~~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.+...+..... ......++.++|+|++++.++..+. ..|.|+.
T Consensus 206 ~~~~~~~g~~~~~~~~~~~~i~V~Dva~a~~~al~~~~--~~g~yn~ 250 (342)
T PLN02214 206 HVLKYLTGSAKTYANLTQAYVDVRDVALAHVLVYEAPS--ASGRYLL 250 (342)
T ss_pred HHHHHHcCCcccCCCCCcCeeEHHHHHHHHHHHHhCcc--cCCcEEE
Confidence 11111111000 0012347899999999999997653 3567664
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=155.20 Aligned_cols=174 Identities=22% Similarity=0.254 Sum_probs=134.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
|+|||||+||||..+++.|+++|+.+|++++|+. ...+...++++..+.++.++++|+++.+++.++++.+.+.+++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 7999999999999999999999988999999993 2344566777777889999999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
||.|||+||.... ..+.+.+.+.++..+...+.+..++.+++.+.- ...+|++||+.+..
T Consensus 82 i~gVih~ag~~~~-~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~------l~~~i~~SSis~~~------------- 141 (181)
T PF08659_consen 82 IDGVIHAAGVLAD-APIQDQTPDEFDAVLAPKVRGLWNLHEALENRP------LDFFILFSSISSLL------------- 141 (181)
T ss_dssp EEEEEE--------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTT------TSEEEEEEEHHHHT-------------
T ss_pred cceeeeeeeeecc-cccccCCHHHHHHHHhhhhhHHHHHHHHhhcCC------CCeEEEECChhHhc-------------
Confidence 9999999999765 367788999999999999999999999886521 25899999999875
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
+.+++..|+.+.+.++.|++.... .|..+.+|+-|..
T Consensus 142 ----------------------G~~gq~~YaaAN~~lda~a~~~~~-----~g~~~~sI~wg~W 178 (181)
T PF08659_consen 142 ----------------------GGPGQSAYAAANAFLDALARQRRS-----RGLPAVSINWGAW 178 (181)
T ss_dssp ----------------------T-TTBHHHHHHHHHHHHHHHHHHH-----TTSEEEEEEE-EB
T ss_pred ----------------------cCcchHhHHHHHHHHHHHHHHHHh-----CCCCEEEEEcccc
Confidence 557899999999999999886543 3667888877764
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=165.36 Aligned_cols=239 Identities=16% Similarity=0.114 Sum_probs=155.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..|++|||||+|+||++++++|+++| +.|++++|+............. ...++.++.+|+++.+.+.++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~------ 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIR------ 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCC-CEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHh------
Confidence 45689999999999999999999999 6999888886554443322221 12368899999999998887765
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
.+|+|||+|+..... . .+..+..+++|+.++..+++++.+... ..+||++||...+...... .+
T Consensus 77 -~~d~ViH~A~~~~~~----~--~~~~~~~~~~Nv~gt~~ll~aa~~~~~-----~~r~v~~SS~~~~~~~~~~----~~ 140 (351)
T PLN02650 77 -GCTGVFHVATPMDFE----S--KDPENEVIKPTVNGMLSIMKACAKAKT-----VRRIVFTSSAGTVNVEEHQ----KP 140 (351)
T ss_pred -CCCEEEEeCCCCCCC----C--CCchhhhhhHHHHHHHHHHHHHHhcCC-----ceEEEEecchhhcccCCCC----CC
Confidence 589999999864211 1 122356789999999999999976531 1489999998654311100 00
Q ss_pred CccccccccccCCCCCCCCCCCC-CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-L 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~ 279 (358)
.+.+ ......+.. ........|+.||.+.+.+++.+++++ |++++.++|+.+.+|.......+ +
T Consensus 141 ~~~E----------~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~~~~~~~~ 206 (351)
T PLN02650 141 VYDE----------DCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN----GLDFISIIPTLVVGPFISTSMPPSL 206 (351)
T ss_pred ccCc----------ccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc----CCeEEEECCCceECCCCCCCCCccH
Confidence 0000 000000000 011123479999999999988887664 89999999999999865332111 1
Q ss_pred hhhh---cc---hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 280 FRLL---FP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 280 ~~~~---~~---~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
...+ .. .......+.++.++|++++++.++..+.. .|.|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~r~~v~V~Dva~a~~~~l~~~~~--~~~~i 252 (351)
T PLN02650 207 ITALSLITGNEAHYSIIKQGQFVHLDDLCNAHIFLFEHPAA--EGRYI 252 (351)
T ss_pred HHHHHHhcCCccccCcCCCcceeeHHHHHHHHHHHhcCcCc--CceEE
Confidence 1100 00 00001113578999999999999976532 45664
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=168.29 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=159.5
Q ss_pred CCCccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH---H----H---------HHHHHHh-cCCCCc
Q 018331 34 VSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---K----A---------ERAAKSA-GMAKEN 96 (358)
Q Consensus 34 ~~~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~---~----~---------~~~~~~~-~~~~~~ 96 (358)
|+.|..++.++++++|||||+|+||++++++|+++| +.|++++|... . . ....+.+ ...+.+
T Consensus 36 ~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 114 (442)
T PLN02572 36 PSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRG-YEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKE 114 (442)
T ss_pred CCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCc
Confidence 455666678999999999999999999999999999 58888764210 0 0 0001111 111246
Q ss_pred eEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 018331 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP 176 (358)
Q Consensus 97 i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~ 176 (358)
+.++.+|+++.+++.++++.. ++|+|||+|+.... .....+++.++..+++|+.|++++++++.....+
T Consensus 115 v~~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~~--~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~---- 183 (442)
T PLN02572 115 IELYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPD---- 183 (442)
T ss_pred ceEEECCCCCHHHHHHHHHhC-----CCCEEEECCCcccC--hhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 889999999999998888753 69999999976432 2223455667888999999999999998665321
Q ss_pred CCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCC
Q 018331 177 SKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG 256 (358)
Q Consensus 177 ~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~g 256 (358)
.++|++||...+. .... |-.-++-+. +... .......+..+...|+.||.+.+.+++.+++.+ |
T Consensus 184 -~~~V~~SS~~vYG-~~~~--~~~E~~i~~-----~~~~---~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~----g 247 (442)
T PLN02572 184 -CHLVKLGTMGEYG-TPNI--DIEEGYITI-----THNG---RTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----G 247 (442)
T ss_pred -ccEEEEecceecC-CCCC--CCccccccc-----cccc---ccccccCCCCCCCcchhHHHHHHHHHHHHHHhc----C
Confidence 4899999987552 1100 000000000 0000 000000122345579999999888888777654 8
Q ss_pred cEEEEecCCcccCCcccccc---------------hhh----hhhhc-c-hhH----HhhhcCccchhHHhhhhhhhhcC
Q 018331 257 IAFASLYPGCIATTGLFREH---------------IPL----FRLLF-P-PFQ----KYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 257 I~v~~v~PG~v~t~~~~~~~---------------~~~----~~~~~-~-~~~----~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
+.+.+++|+.+.+++..... ... ..... . .+. ....+.++.++|++++++.++..
T Consensus 248 l~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~ 327 (442)
T PLN02572 248 IRATDLNQGVVYGVRTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIAN 327 (442)
T ss_pred CCEEEEecccccCCCCcccccccccccccCcccchhhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhC
Confidence 99999999999998643210 000 00000 0 000 01112478999999999998865
Q ss_pred C
Q 018331 312 P 312 (358)
Q Consensus 312 ~ 312 (358)
.
T Consensus 328 ~ 328 (442)
T PLN02572 328 P 328 (442)
T ss_pred h
Confidence 3
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.1e-18 Score=146.68 Aligned_cols=145 Identities=15% Similarity=0.120 Sum_probs=119.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|+++||||++|||+++++.|+++| ..|++++|+.+.++...+++...+.+..++.+|+++.+++.++++++.+.
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G-~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~ 90 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQG-AKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999 59999999987777666666544566778999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-----CCCeEEEEecCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-----PSKRLIIVGSITGN 189 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-----~~g~iv~vsS~~~~ 189 (358)
++++|++|||||.......+.+.+.+. ++ .+|+.+.+..++.+.+++.+++. +.||+..||+.+..
T Consensus 91 ~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (169)
T PRK06720 91 FSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQS 161 (169)
T ss_pred cCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEecccccc
Confidence 999999999999876544554444444 33 67888889999999999887653 45899999987755
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.6e-18 Score=160.47 Aligned_cols=234 Identities=17% Similarity=0.137 Sum_probs=151.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh--cCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA--GMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~--~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++|++|||||+|+||++++++|+++| +.|+++.|+........... .....++.++++|+++.+++..+++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRG-YTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD------ 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCC-CEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc------
Confidence 46899999999999999999999999 69998888754332222111 1123478899999999988877765
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC-CCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN-TNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~-~~~~~~~~~~~ 200 (358)
.+|+|||+|+..... ..+..+..+++|+.++..+++++.... + ..+||++||..+. ++.. +..
T Consensus 76 -~~d~Vih~A~~~~~~------~~~~~~~~~~~nv~gt~~ll~a~~~~~---~--~~~~v~~SS~~~~~y~~~----~~~ 139 (322)
T PLN02662 76 -GCEGVFHTASPFYHD------VTDPQAELIDPAVKGTLNVLRSCAKVP---S--VKRVVVTSSMAAVAYNGK----PLT 139 (322)
T ss_pred -CCCEEEEeCCcccCC------CCChHHHHHHHHHHHHHHHHHHHHhCC---C--CCEEEEccCHHHhcCCCc----CCC
Confidence 589999999975321 111225778999999999999986432 1 1499999997642 1110 000
Q ss_pred CCccccccccccCCCCCCCCCCCCCCC-c-----hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDF-D-----GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
. ....++..+. + ....|+.+|.+.+.+++.++++. |+.++.++|+.+.+|....
T Consensus 140 ~----------------~~~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lRp~~v~Gp~~~~ 199 (322)
T PLN02662 140 P----------------DVVVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN----GIDMVTINPAMVIGPLLQP 199 (322)
T ss_pred C----------------CCcCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCcccCCCCCC
Confidence 0 0001111111 1 12479999999888887776553 8999999999999986432
Q ss_pred cchhhhhhhcchhH-----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 275 EHIPLFRLLFPPFQ-----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 275 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.............. ......++.++|+|++++.++..+.. .|.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~--~~~~~~ 250 (322)
T PLN02662 200 TLNTSAEAILNLINGAQTFPNASYRWVDVRDVANAHIQAFEIPSA--SGRYCL 250 (322)
T ss_pred CCCchHHHHHHHhcCCccCCCCCcCeEEHHHHHHHHHHHhcCcCc--CCcEEE
Confidence 21110011100000 00123478999999999999876532 455544
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-18 Score=160.70 Aligned_cols=234 Identities=13% Similarity=0.078 Sum_probs=149.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.|+++|++|||||+|+||++++++|+++| +.|++++|+... ++.........+.++.++.+|+++.+++.++++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKG-YEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLD 80 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCC-CEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHH
Confidence 47889999999999999999999999999 599988886432 111111111123468899999999999988888
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.+ .+|+|||+|+..... ...+..+..+++|+.++..+++++.+.+.+.+. -.++|++||...+. ....
T Consensus 81 ~~-----~~d~Vih~A~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~-~~~~v~~Ss~~vyg-~~~~ 148 (340)
T PLN02653 81 DI-----KPDEVYNLAAQSHVA-----VSFEMPDYTADVVATGALRLLEAVRLHGQETGR-QIKYYQAGSSEMYG-STPP 148 (340)
T ss_pred Hc-----CCCEEEECCcccchh-----hhhhChhHHHHHHHHHHHHHHHHHHHhcccccc-ceeEEEeccHHHhC-CCCC
Confidence 64 589999999975432 123445677899999999999999988764310 12788888865432 1000
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++..+..+...|+.||.+.+.+++.++.+++- ..++.++.+.||...+ .+.
T Consensus 149 ------------------------~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~-~~~ 203 (340)
T PLN02653 149 ------------------------PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGEN-FVT 203 (340)
T ss_pred ------------------------CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcc-cch
Confidence 1112234445668999999999999999877611 1233444444543221 110
Q ss_pred ccchhhhhhh---cc--hh-H-HhhhcCccchhHHhhhhhhhhcCC
Q 018331 274 REHIPLFRLL---FP--PF-Q-KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 274 ~~~~~~~~~~---~~--~~-~-~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.....+.... .. .+ . ......++-.+|+|++++.++...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~ 249 (340)
T PLN02653 204 RKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQE 249 (340)
T ss_pred hHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcC
Confidence 0000000000 00 00 0 011134679999999999998753
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=160.04 Aligned_cols=239 Identities=15% Similarity=0.104 Sum_probs=153.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH--HHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA--KSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~--~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++++|||||+|+||++++++|+++| +.|+++.|+........ ..+.. ..++.++.+|+++.+++.++++
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~----- 79 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKG-YAVNTTVRDPENQKKIAHLRALQE-LGDLKIFGADLTDEESFEAPIA----- 79 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHHHHHhcCC-CCceEEEEcCCCChHHHHHHHh-----
Confidence 457899999999999999999999999 58988888754332221 11221 1368899999999988877765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC--CCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA--GNVP 198 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~--~~~~ 198 (358)
++|+|||+|+.... . ..+.+...+++|+.++..+++++.+.. + .+++|++||...+..... .+.|
T Consensus 80 --~~d~vih~A~~~~~----~--~~~~~~~~~~~nv~g~~~ll~a~~~~~---~--~~~~v~~SS~~~~g~~~~~~~~~~ 146 (338)
T PLN00198 80 --GCDLVFHVATPVNF----A--SEDPENDMIKPAIQGVHNVLKACAKAK---S--VKRVILTSSAAAVSINKLSGTGLV 146 (338)
T ss_pred --cCCEEEEeCCCCcc----C--CCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeecceeeeccCCCCCCce
Confidence 58999999985321 1 122345668999999999999987642 1 259999999876531100 0000
Q ss_pred CCCCccccccccccCCCCCCCCCC-CCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMI-DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+....... .....++...|+.||.+.+.+++.++.++ |+.+++++|+.+.+|.......
T Consensus 147 --------------~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~R~~~vyGp~~~~~~~ 208 (338)
T PLN00198 147 --------------MNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGPSLTSDIP 208 (338)
T ss_pred --------------eccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc----CceEEEEeCCceECCCccCCCC
Confidence 0000000000 00112345679999999998888877654 8999999999999986432111
Q ss_pred hhh---hh-hcc-hhH-----Hhh----hcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 278 PLF---RL-LFP-PFQ-----KYI----TKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 278 ~~~---~~-~~~-~~~-----~~~----~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
... .. ... .+. ... ...++.++|++++++.++..+.. .|.|+
T Consensus 209 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~--~~~~~ 264 (338)
T PLN00198 209 SSLSLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESA--SGRYI 264 (338)
T ss_pred CcHHHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCc--CCcEE
Confidence 100 00 000 000 000 13578999999999999876432 45664
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=157.89 Aligned_cols=229 Identities=13% Similarity=0.151 Sum_probs=151.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH--HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~--~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
|++|||||+|+||+++++.|+++|...|++++|.... ..... .+. ...++.++.+|+++.+++.++++.. +
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 74 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLA-PVA-QSERFAFEKVDICDRAELARVFTEH-----Q 74 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhh-hcc-cCCceEEEECCCcChHHHHHHHhhc-----C
Confidence 5799999999999999999999995345555654321 11111 111 2246788999999999988887742 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHh---cCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK---QSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~---~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+|||+||.... ..+.+.++..+++|+.+++.+++++.+.+. .......++|++||...+. ....
T Consensus 75 ~D~Vih~A~~~~~-----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg-~~~~----- 143 (355)
T PRK10217 75 PDCVMHLAAESHV-----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYG-DLHS----- 143 (355)
T ss_pred CCEEEECCcccCc-----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcC-CCCC-----
Confidence 9999999997532 123456788999999999999999987542 1111124899999976442 1000
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~- 278 (358)
...+.++..+..+...|+.||.+.+.+++.+++++ ++.+..++|+.+.+|...... .+
T Consensus 144 ----------------~~~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~~~~~~~~~ 203 (355)
T PRK10217 144 ----------------TDDFFTETTPYAPSSPYSASKASSDHLVRAWLRTY----GLPTLITNCSNNYGPYHFPEKLIPL 203 (355)
T ss_pred ----------------CCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCCcccHHHH
Confidence 00012222344456789999999999999988775 788999999999988643211 11
Q ss_pred hhhhhcc--hhH----HhhhcCccchhHHhhhhhhhhcCC
Q 018331 279 LFRLLFP--PFQ----KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 279 ~~~~~~~--~~~----~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
+...... .+. ......++.++|++.+++.++...
T Consensus 204 ~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~ 243 (355)
T PRK10217 204 MILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTG 243 (355)
T ss_pred HHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcC
Confidence 1111110 000 001234789999999999988653
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-16 Score=151.00 Aligned_cols=225 Identities=12% Similarity=0.039 Sum_probs=141.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHh-cCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~-~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
|++|||||+|+||++++++|+++| +.|++++|+... .+...+.. ...+.++.++.+|++|.+++.++++.+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKG-YEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEI-- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCC-CEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhC--
Confidence 589999999999999999999999 599999887532 11111111 111246889999999999988888854
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+|||+|+...... ..+.-...+++|+.|+..+++++.+...+. ..++|++||...+. ....
T Consensus 78 ---~~d~ViH~Aa~~~~~~-----~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~---~~~~v~~SS~~vyg-~~~~---- 141 (343)
T TIGR01472 78 ---KPTEIYNLAAQSHVKV-----SFEIPEYTADVDGIGTLRLLEAVRTLGLIK---SVKFYQASTSELYG-KVQE---- 141 (343)
T ss_pred ---CCCEEEECCcccccch-----hhhChHHHHHHHHHHHHHHHHHHHHhCCCc---CeeEEEeccHHhhC-CCCC----
Confidence 5899999999764321 222235667899999999999998753321 13899999976542 1100
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc----
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE---- 275 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~---- 275 (358)
.+.++..+..+...|+.||.+.+.+++.+++++ |+.+....+..+.+|.....
T Consensus 142 -------------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~~~~~~~gp~~~~~~~~~ 198 (343)
T TIGR01472 142 -------------------IPQNETTPFYPRSPYAAAKLYAHWITVNYREAY----GLFAVNGILFNHESPRRGENFVTR 198 (343)
T ss_pred -------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCceEEEeecccCCCCCCccccch
Confidence 011222344456689999999999999988775 33332222222222211111
Q ss_pred -chhhhhhhc-c----hh-H-HhhhcCccchhHHhhhhhhhhcCC
Q 018331 276 -HIPLFRLLF-P----PF-Q-KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 276 -~~~~~~~~~-~----~~-~-~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
...+..... . .. . ......++-++|++++++.++..+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~ 243 (343)
T TIGR01472 199 KITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQD 243 (343)
T ss_pred HHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcC
Confidence 000111100 0 00 0 011234789999999999888654
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.2e-17 Score=156.63 Aligned_cols=226 Identities=17% Similarity=0.164 Sum_probs=181.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.-++||++|||||+|.||.++++++++.+...+++.+|++.++.....++... ..++.++-+|+.|.+.+.++++..
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~- 324 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH- 324 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC-
Confidence 45899999999999999999999999999889999999999988888888653 467889999999999999888843
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++|+|+|+|+.-+-+ .-| ....+.+.+|++|+.+++.++...-.+ ++|.+|+-.+.
T Consensus 325 ----kvd~VfHAAA~KHVP--l~E---~nP~Eai~tNV~GT~nv~~aa~~~~V~------~~V~iSTDKAV--------- 380 (588)
T COG1086 325 ----KVDIVFHAAALKHVP--LVE---YNPEEAIKTNVLGTENVAEAAIKNGVK------KFVLISTDKAV--------- 380 (588)
T ss_pred ----CCceEEEhhhhccCc--chh---cCHHHHHHHhhHhHHHHHHHHHHhCCC------EEEEEecCccc---------
Confidence 699999999986442 212 334566889999999999999877654 99999998877
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
.+...||+||...+.++.+++... ...+-++.+|+-|.|.++ ..+-.|
T Consensus 381 -----------------------------~PtNvmGaTKr~aE~~~~a~~~~~-~~~~T~f~~VRFGNVlGS--rGSViP 428 (588)
T COG1086 381 -----------------------------NPTNVMGATKRLAEKLFQAANRNV-SGTGTRFCVVRFGNVLGS--RGSVIP 428 (588)
T ss_pred -----------------------------CCchHhhHHHHHHHHHHHHHhhcc-CCCCcEEEEEEecceecC--CCCCHH
Confidence 357789999999999999998876 444789999999999886 445556
Q ss_pred hhhhhcchhH------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 LFRLLFPPFQ------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 ~~~~~~~~~~------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
++........ ....+-+++..|+++.++..... ..+|..+..|.+
T Consensus 429 lFk~QI~~GgplTvTdp~mtRyfMTI~EAv~LVlqA~a~---~~gGeifvldMG 479 (588)
T COG1086 429 LFKKQIAEGGPLTVTDPDMTRFFMTIPEAVQLVLQAGAI---AKGGEIFVLDMG 479 (588)
T ss_pred HHHHHHHcCCCccccCCCceeEEEEHHHHHHHHHHHHhh---cCCCcEEEEcCC
Confidence 6555442111 11223368999999999988754 468888888873
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=151.19 Aligned_cols=246 Identities=15% Similarity=0.099 Sum_probs=153.5
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC------CCCceEEEEecCCCHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~------~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
..+.++|++|||||+|+||+++++.|+++| +.|+++.|+....+... .+.. ....+.++.+|+++.+++.++
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G-~~V~~~~r~~~~~~~l~-~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~ 125 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHG-YSVRIAVDTQEDKEKLR-EMEMFGEMGRSNDGIWTVMANLTEPESLHEA 125 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HHhhhccccccCCceEEEEcCCCCHHHHHHH
Confidence 345779999999999999999999999999 59988888765544432 2211 113578899999999998887
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC-CCCC
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNT 192 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~-~~~~ 192 (358)
++ .+|.|||.++........ .......++|+.++..+++++...- + -.++|++||..+ .++.
T Consensus 126 i~-------~~d~V~hlA~~~~~~~~~-----~~~~~~~~~nv~gt~~llea~~~~~---~--v~r~V~~SS~~~~vyg~ 188 (367)
T PLN02686 126 FD-------GCAGVFHTSAFVDPAGLS-----GYTKSMAELEAKASENVIEACVRTE---S--VRKCVFTSSLLACVWRQ 188 (367)
T ss_pred HH-------hccEEEecCeeecccccc-----cccchhhhhhHHHHHHHHHHHHhcC---C--ccEEEEeccHHHhcccc
Confidence 76 478999999876432110 0112446788999999988875431 1 148999999742 2211
Q ss_pred c-CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 193 L-AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 193 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
. ....|...+ ... ..++..+......|+.||.+.+.+++.++++ .|+++++++|+.|.+|+
T Consensus 189 ~~~~~~~~~i~------------E~~--~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~gl~~v~lRp~~vyGp~ 250 (367)
T PLN02686 189 NYPHDLPPVID------------EES--WSDESFCRDNKLWYALGKLKAEKAAWRAARG----KGLKLATICPALVTGPG 250 (367)
T ss_pred cCCCCCCcccC------------CCC--CCChhhcccccchHHHHHHHHHHHHHHHHHh----cCceEEEEcCCceECCC
Confidence 0 000000000 000 0001112233456999999999998887765 38999999999999996
Q ss_pred ccccch-hhhhhhcchhHH--hhhcCccchhHHhhhhhhhhcCCC-CCCCceeee
Q 018331 272 LFREHI-PLFRLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWS 322 (358)
Q Consensus 272 ~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~ 322 (358)
...... .....+...... .....++.++|++++++.++..+. ....|.|+.
T Consensus 251 ~~~~~~~~~~~~~~g~~~~~g~g~~~~v~V~Dva~A~~~al~~~~~~~~~~~yi~ 305 (367)
T PLN02686 251 FFRRNSTATIAYLKGAQEMLADGLLATADVERLAEAHVCVYEAMGNKTAFGRYIC 305 (367)
T ss_pred CCCCCChhHHHHhcCCCccCCCCCcCeEEHHHHHHHHHHHHhccCCCCCCCcEEE
Confidence 432111 111111111100 011236899999999999987431 123455643
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=151.84 Aligned_cols=184 Identities=15% Similarity=0.133 Sum_probs=129.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH----HHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~----~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+++|++|||||+|+||.+++++|+++| +.|++++|..... ............++.++.+|+++.+++.++++..
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~ 80 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAG-YKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFAST 80 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhC
Confidence 4678999999999999999999999999 5888887643211 1121111112346889999999999998887642
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++|+|||+||..... .+.+.+...+++|+.++..+++++.. .+ ..++|++||...+. ...
T Consensus 81 -----~~d~vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~Ss~~vyg-~~~--- 140 (352)
T PLN02240 81 -----RFDAVIHFAGLKAVG-----ESVAKPLLYYDNNLVGTINLLEVMAK----HG--CKKLVFSSSATVYG-QPE--- 140 (352)
T ss_pred -----CCCEEEEccccCCcc-----ccccCHHHHHHHHHHHHHHHHHHHHH----cC--CCEEEEEccHHHhC-CCC---
Confidence 699999999975321 13345678899999999999886643 22 14899999964431 100
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
..+.++..+..+...|+.||.+.+.+++.++.+. .++.+..++|+.+.+
T Consensus 141 --------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~~R~~~v~G 189 (352)
T PLN02240 141 --------------------EVPCTEEFPLSATNPYGRTKLFIEEICRDIHASD---PEWKIILLRYFNPVG 189 (352)
T ss_pred --------------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCCEEEEeecCcCC
Confidence 0112223344556789999999999998887542 367788888765544
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=147.70 Aligned_cols=222 Identities=14% Similarity=0.153 Sum_probs=148.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|||||+|+||.+++++|+++|. ..|++.+|.. ...+.. +.+.. ..++.++.+|+++.+++.++++.. +
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~-----~ 73 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENL-ADLED-NPRYRFVKGDIGDRELVSRLFTEH-----Q 73 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhh-hhhcc-CCCcEEEEcCCcCHHHHHHHHhhc-----C
Confidence 489999999999999999999872 4788777632 111111 12211 246788999999999998887743 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+..... .+.+..+..+++|+.++..+++++...+.+ .++|++||...+. ......
T Consensus 74 ~d~vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-----~~~i~~Ss~~v~g-~~~~~~------ 136 (317)
T TIGR01181 74 PDAVVHFAAESHVD-----RSISGPAAFIETNVVGTYTLLEAVRKYWHE-----FRFHHISTDEVYG-DLEKGD------ 136 (317)
T ss_pred CCEEEEcccccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-----ceEEEeeccceeC-CCCCCC------
Confidence 99999999976322 133456778999999999999888665432 4899999966432 110000
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-chh-hhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HIP-LFR 281 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~-~~~-~~~ 281 (358)
...+..+..+...|+.+|++.+.+++.++++. ++.+..++|+.+.++..... ..+ +..
T Consensus 137 ----------------~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~R~~~i~G~~~~~~~~~~~~~~ 196 (317)
T TIGR01181 137 ----------------AFTETTPLAPSSPYSASKAASDHLVRAYHRTY----GLPALITRCSNNYGPYQFPEKLIPLMIT 196 (317)
T ss_pred ----------------CcCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCCCcccHHHHHHH
Confidence 01122233445689999999999999987765 89999999999988754322 111 111
Q ss_pred hhcc--hh---H-HhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LLFP--PF---Q-KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~~~--~~---~-~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.... .. . ......++.++|+++++..++...
T Consensus 197 ~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~ 233 (317)
T TIGR01181 197 NALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKG 233 (317)
T ss_pred HHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCC
Confidence 1110 00 0 001123678999999999998653
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=151.47 Aligned_cols=223 Identities=13% Similarity=0.052 Sum_probs=146.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh----cC-CCCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA----GM-AKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~----~~-~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.|+++++|||||+|.||.+++++|+++| +.|++++|............ .. ...++.++.+|+.+.+.+..+++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~- 89 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLN-QTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK- 89 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh-
Confidence 4678999999999999999999999999 69999988543211111111 11 12367889999999888777665
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.+|+|||.|+...... ..+.....+++|+.|+..+++++... + -.++|++||...+.... .
T Consensus 90 ------~~d~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~gt~nll~~~~~~----~--~~~~v~~SS~~vyg~~~-~- 150 (348)
T PRK15181 90 ------NVDYVLHQAALGSVPR-----SLKDPIATNSANIDGFLNMLTAARDA----H--VSSFTYAASSSTYGDHP-D- 150 (348)
T ss_pred ------CCCEEEECccccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeechHhhCCCC-C-
Confidence 5899999999753321 12233456889999999999888543 2 14899999976542110 0
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
.| ..+..+..+...|+.||.+.+.+++.++++ .|+++..++|+.+.+|......
T Consensus 151 ~~----------------------~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~~lR~~~vyGp~~~~~~ 204 (348)
T PRK15181 151 LP----------------------KIEERIGRPLSPYAVTKYVNELYADVFARS----YEFNAIGLRYFNVFGRRQNPNG 204 (348)
T ss_pred CC----------------------CCCCCCCCCCChhhHHHHHHHHHHHHHHHH----hCCCEEEEEecceeCcCCCCCC
Confidence 00 001112223457999999988888777654 3899999999999998543221
Q ss_pred -----hh-hhhhhc--chhH----HhhhcCccchhHHhhhhhhhhcC
Q 018331 277 -----IP-LFRLLF--PPFQ----KYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 277 -----~~-~~~~~~--~~~~----~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.+ +..... .... ....+.++..+|++++++.++..
T Consensus 205 ~~~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~ 251 (348)
T PRK15181 205 AYSAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATT 251 (348)
T ss_pred ccccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhc
Confidence 11 111111 0110 01112368899999999887754
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.2e-16 Score=148.44 Aligned_cols=235 Identities=15% Similarity=0.192 Sum_probs=149.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++|||||+|+||++++++|+++|...|+.+++.. ...+... .+. .+.++.++.+|+++.+++.+++++. ++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DVS-DSERYVFEHADICDRAELDRIFAQH-----QP 74 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hcc-cCCceEEEEecCCCHHHHHHHHHhc-----CC
Confidence 5999999999999999999999954466555532 1122221 111 1346788999999999998888752 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC---CCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~---~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
|+|||+||...... .....+..+++|+.|+..+++++.+++.... ....++|++||...+. ... .+.
T Consensus 75 d~vih~A~~~~~~~-----~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg-~~~--~~~-- 144 (352)
T PRK10084 75 DAVMHLAAESHVDR-----SITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYG-DLP--HPD-- 144 (352)
T ss_pred CEEEECCcccCCcc-----hhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcC-CCC--ccc--
Confidence 99999999753221 1234467899999999999999988764221 0024899999876442 100 000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hhh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPL- 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~~- 279 (358)
++.. ....-...+..+..+...|+.||.+.+.+++.+++++ |+.+..++|+.+.+|...... .+.
T Consensus 145 ---~~~~------~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~vilr~~~v~Gp~~~~~~~~~~~ 211 (352)
T PRK10084 145 ---EVEN------SEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY----GLPTIVTNCSNNYGPYHFPEKLIPLV 211 (352)
T ss_pred ---cccc------cccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeccceeCCCcCccchHHHH
Confidence 0000 0000012233344556689999999999999988775 778888999999887542211 111
Q ss_pred hhhhc-----chhH-HhhhcCccchhHHhhhhhhhhcC
Q 018331 280 FRLLF-----PPFQ-KYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 280 ~~~~~-----~~~~-~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
..... ..+. ......++.++|++++++.++..
T Consensus 212 ~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~ 249 (352)
T PRK10084 212 ILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTE 249 (352)
T ss_pred HHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 01110 0000 01123378999999999988865
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.5e-16 Score=143.63 Aligned_cols=235 Identities=17% Similarity=0.135 Sum_probs=150.7
Q ss_pred EEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 49 IITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 49 lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
|||||+|.||++++++|+++|. +.|.++++....... +.+.. .....++++|+++.+++.++++ +.|+|
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~--~~~~~-~~~~~~~~~Di~d~~~l~~a~~-------g~d~V 70 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL--KDLQK-SGVKEYIQGDITDPESLEEALE-------GVDVV 70 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc--hhhhc-ccceeEEEeccccHHHHHHHhc-------CCceE
Confidence 6999999999999999999993 478888876543221 11111 1233499999999999998887 68999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||+|+...... ....+..+++|+.|+-++++++...-. .++|++||........... ++
T Consensus 71 ~H~Aa~~~~~~------~~~~~~~~~vNV~GT~nvl~aa~~~~V------krlVytSS~~vv~~~~~~~--------~~- 129 (280)
T PF01073_consen 71 FHTAAPVPPWG------DYPPEEYYKVNVDGTRNVLEAARKAGV------KRLVYTSSISVVFDNYKGD--------PI- 129 (280)
T ss_pred EEeCccccccC------cccHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEEcCcceeEeccCCC--------Cc-
Confidence 99999864321 344678899999999999999975422 4999999998764210000 00
Q ss_pred cccccCCCCCCCCCCCCCCC--chhhhhHHhHHHHHHHHHHHHH-hhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 208 GFAGGLNGLNSSSMIDGGDF--DGAKAYKDSKVCNMLTMQEFHR-RFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~--~~~~~Y~~sK~al~~~~~~la~-e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
.+.++..++ .....|+.||+.-+.++..... ++.....+...+|+|..|.+|+-..-.........
T Consensus 130 -----------~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~~~~~~~~~~ 198 (280)
T PF01073_consen 130 -----------INGDEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRLVPRLVKMVR 198 (280)
T ss_pred -----------ccCCcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccccchhhHHHH
Confidence 011122222 2555899999998877776654 22112358999999999999854332211111111
Q ss_pred ch---h---HHhhhcCccchhHHhhhhhhhhc---CC--CCCCCceeeecCC
Q 018331 285 PP---F---QKYITKGYVSEDEAGKRLAQVVS---DP--SLTKSGVYWSWNK 325 (358)
Q Consensus 285 ~~---~---~~~~~~~~~~~~~~a~~i~~l~~---~~--~~~~~G~~~~~d~ 325 (358)
.. + .......++.++++|.+++.++. .+ .....|+.+.+..
T Consensus 199 ~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~~y~itd 250 (280)
T PF01073_consen 199 SGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQAYFITD 250 (280)
T ss_pred hcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCcEEEEEC
Confidence 10 0 01111236789999999986643 22 2235666554443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-15 Score=141.45 Aligned_cols=180 Identities=14% Similarity=0.173 Sum_probs=126.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++| +.|++++|...........+... .++.++.+|+++.+++.++++. +++|+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g-~~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~d~ 73 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESG-HEVVVLDNLSNGSPEALKRGERI-TRVTFVEGDLRDRELLDRLFEE-----HKIDA 73 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCC-CeEEEEeCCCccchhhhhhhccc-cceEEEECCCCCHHHHHHHHHh-----CCCcE
Confidence 38999999999999999999999 58888776432222222222111 2577889999999998888763 37999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||...... ..+.....+.+|+.++..+++++... + ..++|++||...+. ... .
T Consensus 74 vv~~ag~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~ss~~~~g-~~~-----~------ 130 (328)
T TIGR01179 74 VIHFAGLIAVGE-----SVQDPLKYYRNNVVNTLNLLEAMQQT----G--VKKFIFSSSAAVYG-EPS-----S------ 130 (328)
T ss_pred EEECccccCcch-----hhcCchhhhhhhHHHHHHHHHHHHhc----C--CCEEEEecchhhcC-CCC-----C------
Confidence 999999763221 22344567889999999998876432 2 25899998865431 100 0
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
....+..+..+...|+.+|++.+.+++.++++. .++.+..++|+.+.++.
T Consensus 131 ------------~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~g~~ 180 (328)
T TIGR01179 131 ------------IPISEDSPLGPINPYGRSKLMSERILRDLSKAD---PGLSYVILRYFNVAGAD 180 (328)
T ss_pred ------------CCccccCCCCCCCchHHHHHHHHHHHHHHHHhc---cCCCEEEEecCcccCCC
Confidence 011122233455689999999999999987652 48999999999888863
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.1e-17 Score=146.84 Aligned_cols=218 Identities=17% Similarity=0.161 Sum_probs=149.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCce----EEEEecCCCHHHHHHHHHHHHhcC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENY----TIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i----~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|||||+|.||++++++|++.+...+++++|++..+-...+++.. .+.++ ..+-+|++|.+.+.+++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 699999999999999999999977999999999998888888742 23334 34578999999888887643
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+|+|.|+.-+-+ +-+. ...+.+.+|+.|+.++++++..+-. .++|++|+-.+.
T Consensus 77 -~pdiVfHaAA~KhVp--l~E~---~p~eav~tNv~GT~nv~~aa~~~~v------~~~v~ISTDKAv------------ 132 (293)
T PF02719_consen 77 -KPDIVFHAAALKHVP--LMED---NPFEAVKTNVLGTQNVAEAAIEHGV------ERFVFISTDKAV------------ 132 (293)
T ss_dssp -T-SEEEE------HH--HHCC---CHHHHHHHHCHHHHHHHHHHHHTT-------SEEEEEEECGCS------------
T ss_pred -CCCEEEEChhcCCCC--hHHh---CHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEccccccC------------
Confidence 799999999985432 1122 3456689999999999999987654 399999998876
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+...||+||...+.++.+.+... .+.+.++.+|+-|.|..+ ..+-.|.+.
T Consensus 133 --------------------------~PtnvmGatKrlaE~l~~~~~~~~-~~~~t~f~~VRFGNVlgS--~GSVip~F~ 183 (293)
T PF02719_consen 133 --------------------------NPTNVMGATKRLAEKLVQAANQYS-GNSDTKFSSVRFGNVLGS--RGSVIPLFK 183 (293)
T ss_dssp --------------------------S--SHHHHHHHHHHHHHHHHCCTS-SSS--EEEEEEE-EETTG--TTSCHHHHH
T ss_pred --------------------------CCCcHHHHHHHHHHHHHHHHhhhC-CCCCcEEEEEEecceecC--CCcHHHHHH
Confidence 357799999999999999998876 566899999999999875 333334333
Q ss_pred hhcchh------HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 282 LLFPPF------QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 282 ~~~~~~------~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.....- .....+-+++++|+++.++..+.. ..+|..+..|.
T Consensus 184 ~Qi~~g~PlTvT~p~mtRffmti~EAv~Lvl~a~~~---~~~geifvl~m 230 (293)
T PF02719_consen 184 KQIKNGGPLTVTDPDMTRFFMTIEEAVQLVLQAAAL---AKGGEIFVLDM 230 (293)
T ss_dssp HHHHTTSSEEECETT-EEEEE-HHHHHHHHHHHHHH-----TTEEEEE--
T ss_pred HHHHcCCcceeCCCCcEEEEecHHHHHHHHHHHHhh---CCCCcEEEecC
Confidence 322111 111223368999999999998754 24677777776
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=138.69 Aligned_cols=209 Identities=16% Similarity=0.237 Sum_probs=131.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~ 119 (358)
.+.+++++|||||+|+||++++++|+++| +.|+++.|+.+...... . .+.++.++++|+++. +++.. .+.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~---~-~~~~~~~~~~Dl~d~~~~l~~---~~~- 83 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKG-FAVKAGVRDVDKAKTSL---P-QDPSLQIVRADVTEGSDKLVE---AIG- 83 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhc---c-cCCceEEEEeeCCCCHHHHHH---Hhh-
Confidence 35678899999999999999999999999 69999999876543321 1 134688999999983 33222 221
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++|+||+|+|....... ...+.+|+.++..+++++.. .+ .++||++||...+....
T Consensus 84 --~~~d~vi~~~g~~~~~~~---------~~~~~~n~~~~~~ll~a~~~----~~--~~~iV~iSS~~v~g~~~------ 140 (251)
T PLN00141 84 --DDSDAVICATGFRRSFDP---------FAPWKVDNFGTVNLVEACRK----AG--VTRFILVSSILVNGAAM------ 140 (251)
T ss_pred --cCCCEEEECCCCCcCCCC---------CCceeeehHHHHHHHHHHHH----cC--CCEEEEEccccccCCCc------
Confidence 269999999986422111 11256888898888888742 22 26999999986542000
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHH-HHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM-QEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~-~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.+....|...|.+...+. +..+.++....|++++.|+||++.+++.......
T Consensus 141 --------------------------~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~~gi~~~iirpg~~~~~~~~~~~~~ 194 (251)
T PLN00141 141 --------------------------GQILNPAYIFLNLFGLTLVAKLQAEKYIRKSGINYTIVRPGGLTNDPPTGNIVM 194 (251)
T ss_pred --------------------------ccccCcchhHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECCCccCCCCCceEEE
Confidence 0111223444443322222 2222222245689999999999987643222110
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
... .....+.++++++|+.++.++..+..
T Consensus 195 -----~~~--~~~~~~~i~~~dvA~~~~~~~~~~~~ 223 (251)
T PLN00141 195 -----EPE--DTLYEGSISRDQVAEVAVEALLCPES 223 (251)
T ss_pred -----CCC--CccccCcccHHHHHHHHHHHhcChhh
Confidence 000 00112467999999999999977653
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-15 Score=141.75 Aligned_cols=223 Identities=18% Similarity=0.102 Sum_probs=149.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++++||||+|+||+++++.|+++| +.|++++|+....... . ...+.++.+|+++.+++.++++ .+|
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~----~--~~~~~~~~~D~~~~~~l~~~~~-------~~d 66 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQG-EEVRVLVRPTSDRRNL----E--GLDVEIVEGDLRDPASLRKAVA-------GCR 66 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCC-CEEEEEEecCcccccc----c--cCCceEEEeeCCCHHHHHHHHh-------CCC
Confidence 369999999999999999999999 6999999986443211 1 2357899999999998887765 689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+|+.... ..+.++..+++|+.++..+++++.... .+++|++||...+.... .+.
T Consensus 67 ~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~~v~~SS~~~~~~~~-~~~-------- 124 (328)
T TIGR03466 67 ALFHVAADYRL-------WAPDPEEMYAANVEGTRNLLRAALEAG------VERVVYTSSVATLGVRG-DGT-------- 124 (328)
T ss_pred EEEEeceeccc-------CCCCHHHHHHHHHHHHHHHHHHHHHhC------CCeEEEEechhhcCcCC-CCC--------
Confidence 99999986421 123356778899999999998876432 25999999987653110 000
Q ss_pred cccccccCCCCCCCCCCCCCC---CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--h-h
Q 018331 206 LRGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--P-L 279 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~-~ 279 (358)
+.++..+ ......|+.+|.+.+.+++.++.+. ++.+..++|+.+.++....... . .
T Consensus 125 --------------~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~~~G~~~~~~~~~~~~~ 186 (328)
T TIGR03466 125 --------------PADETTPSSLDDMIGHYKRSKFLAEQAALEMAAEK----GLPVVIVNPSTPIGPRDIKPTPTGRII 186 (328)
T ss_pred --------------CcCccCCCCcccccChHHHHHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCCCCCCCcHHHHH
Confidence 0011111 1224479999999999988877653 8999999999998875322110 0 0
Q ss_pred hhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 280 FRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 280 ~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
......... ......++.++|+|++++.++... ..|.++...+
T Consensus 187 ~~~~~~~~~~~~~~~~~~i~v~D~a~a~~~~~~~~---~~~~~~~~~~ 231 (328)
T TIGR03466 187 VDFLNGKMPAYVDTGLNLVHVDDVAEGHLLALERG---RIGERYILGG 231 (328)
T ss_pred HHHHcCCCceeeCCCcceEEHHHHHHHHHHHHhCC---CCCceEEecC
Confidence 111000000 001123678999999999888663 2466555544
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=142.74 Aligned_cols=180 Identities=14% Similarity=0.096 Sum_probs=121.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++|||||+|+||+++++.|+++| +.|++++|...........+.. .+.++.++.+|+++.+++..+++. .++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~~~d 75 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHD-----HAID 75 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCC-CeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhc-----CCCC
Confidence 59999999999999999999999 5888887643222222121211 134577889999999988887663 3699
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||...... ..+.....+++|+.++..+++++.. .+ .+++|++||...+. ...
T Consensus 76 ~vvh~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~~v~~Ss~~~yg-~~~----------- 132 (338)
T PRK10675 76 TVIHFAGLKAVGE-----SVQKPLEYYDNNVNGTLRLISAMRA----AN--VKNLIFSSSATVYG-DQP----------- 132 (338)
T ss_pred EEEECCccccccc-----hhhCHHHHHHHHHHHHHHHHHHHHH----cC--CCEEEEeccHHhhC-CCC-----------
Confidence 9999999763221 1233456788999999998876643 22 25899999975441 100
Q ss_pred cccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
..+.++..+. .+...|+.+|.+.+.+++.++++. .++++..++|+.+.++
T Consensus 133 ------------~~~~~E~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilR~~~v~g~ 183 (338)
T PRK10675 133 ------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_pred ------------CCccccccCCCCCCChhHHHHHHHHHHHHHHHHhc---CCCcEEEEEeeeecCC
Confidence 0011122222 235689999999999999987653 3677777776555543
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-15 Score=136.52 Aligned_cols=216 Identities=17% Similarity=0.238 Sum_probs=153.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
||||||+|.||.++++.|+++| +.|+.+.|+........... ++.++.+|+.+.++++++++.. .+|.|
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g-~~v~~~~~~~~~~~~~~~~~-----~~~~~~~dl~~~~~~~~~~~~~-----~~d~v 69 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKG-HEVIVLSRSSNSESFEEKKL-----NVEFVIGDLTDKEQLEKLLEKA-----NIDVV 69 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-TEEEEEESCSTGGHHHHHHT-----TEEEEESETTSHHHHHHHHHHH-----TESEE
T ss_pred EEEEccCCHHHHHHHHHHHHcC-Cccccccccccccccccccc-----eEEEEEeecccccccccccccc-----CceEE
Confidence 7999999999999999999999 58877777754433332221 7899999999999999999876 69999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||+|+.... ..+.+.....++.|+.+...+++++...-. .++|++||...+...
T Consensus 70 i~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~------~~~i~~sS~~~y~~~--------------- 123 (236)
T PF01370_consen 70 IHLAAFSSN-----PESFEDPEEIIEANVQGTRNLLEAAREAGV------KRFIFLSSASVYGDP--------------- 123 (236)
T ss_dssp EEEBSSSSH-----HHHHHSHHHHHHHHHHHHHHHHHHHHHHTT------SEEEEEEEGGGGTSS---------------
T ss_pred EEeeccccc-----cccccccccccccccccccccccccccccc------ccccccccccccccc---------------
Confidence 999997531 113356677888899998888888875543 399999996544211
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc-cccchhhhhhhcch
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL-FREHIPLFRLLFPP 286 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~-~~~~~~~~~~~~~~ 286 (358)
...+.++..+......|+.+|...+.+.+.+.+.. ++++.+++|+.+.++.. ..........+...
T Consensus 124 ---------~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~~~ 190 (236)
T PF01370_consen 124 ---------DGEPIDEDSPINPLSPYGASKRAAEELLRDYAKKY----GLRVTILRPPNVYGPGNPNNNSSSFLPSLIRQ 190 (236)
T ss_dssp ---------SSSSBETTSGCCHSSHHHHHHHHHHHHHHHHHHHH----TSEEEEEEESEEESTTSSSSSTSSHHHHHHHH
T ss_pred ---------ccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccchhhHH
Confidence 11122333444566679999999998888887764 89999999999999861 11111111111111
Q ss_pred hH----------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 287 FQ----------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 287 ~~----------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.. ......++..+|++++++.++..+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~ 227 (236)
T PF01370_consen 191 ALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPK 227 (236)
T ss_dssp HHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSC
T ss_pred hhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCC
Confidence 10 1111336899999999999998876
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-15 Score=144.34 Aligned_cols=254 Identities=13% Similarity=0.122 Sum_probs=149.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc-CCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++.+++|||||+|.||+++++.|+++|.+.|++++|+............ ....++.++.+|+++.+.+.++++
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~----- 85 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIK----- 85 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhh-----
Confidence 45667899999999999999999999842589999987654433221100 112468999999999988877765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC----C
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG----N 196 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~----~ 196 (358)
.+|+|||+|+...... . . ..-...+..|+.++..+++++... . .++|++||...+...... .
T Consensus 86 --~~d~ViHlAa~~~~~~-~-~---~~~~~~~~~n~~gt~~ll~aa~~~----~---~r~v~~SS~~vYg~~~~~~~~e~ 151 (386)
T PLN02427 86 --MADLTINLAAICTPAD-Y-N---TRPLDTIYSNFIDALPVVKYCSEN----N---KRLIHFSTCEVYGKTIGSFLPKD 151 (386)
T ss_pred --cCCEEEEcccccChhh-h-h---hChHHHHHHHHHHHHHHHHHHHhc----C---CEEEEEeeeeeeCCCcCCCCCcc
Confidence 4899999999753311 1 1 111234567999999888877432 1 489999997644211000 0
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc--
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-- 274 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-- 274 (358)
.|..++.. ... ..+ ...+............|+.||.+.+.+++.+++. .|+.+..++|+.|.+|....
T Consensus 152 ~p~~~~~~-~~~----~~e-~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilR~~~vyGp~~~~~~ 221 (386)
T PLN02427 152 HPLRQDPA-FYV----LKE-DESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE----NGLEFTIVRPFNWIGPRMDFIP 221 (386)
T ss_pred cccccccc-ccc----ccc-cccccccCCCCccccchHHHHHHHHHHHHHHHhh----cCCceEEecccceeCCCCCccc
Confidence 00000000 000 000 0000000000012346999999988888766544 48999999999999985321
Q ss_pred ------cc-hhhh----hhhcc--hhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 275 ------EH-IPLF----RLLFP--PFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 275 ------~~-~~~~----~~~~~--~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. ..+. ..... .+. ......++.++|++++++.++..+. ...|..+...+
T Consensus 222 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~-~~~g~~yni~~ 288 (386)
T PLN02427 222 GIDGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPA-RANGHIFNVGN 288 (386)
T ss_pred cccccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcc-cccCceEEeCC
Confidence 00 0000 00000 000 0011247889999999999987642 12455555443
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.7e-14 Score=129.66 Aligned_cols=235 Identities=15% Similarity=0.201 Sum_probs=167.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|||||.|.||.++++.++.+.. ..|+.++.=- ...+.+.... ..++..++++|+.|.+.+.+++++.
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~--~~~~~~fv~~DI~D~~~v~~~~~~~----- 73 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVE--DSPRYRFVQGDICDRELVDRLFKEY----- 73 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhh--cCCCceEEeccccCHHHHHHHHHhc-----
Confidence 4699999999999999999998874 3466666521 1222222221 2368999999999999998888854
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
.+|+|||-|+-.+-.+ +.++-+..+++|+.|++.++.++..+..+ .|++.||.-..+ |++..
T Consensus 74 ~~D~VvhfAAESHVDR-----SI~~P~~Fi~TNv~GT~~LLEaar~~~~~-----frf~HISTDEVY-G~l~~------- 135 (340)
T COG1088 74 QPDAVVHFAAESHVDR-----SIDGPAPFIQTNVVGTYTLLEAARKYWGK-----FRFHHISTDEVY-GDLGL------- 135 (340)
T ss_pred CCCeEEEechhccccc-----cccChhhhhhcchHHHHHHHHHHHHhccc-----ceEEEecccccc-ccccC-------
Confidence 6999999998875433 55666778899999999999999888654 489999987654 22211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~~~~ 281 (358)
....+.++.++.+.+.|++|||+-.++++++.+-+ |+.++..++.--.+|-...+. .|...
T Consensus 136 --------------~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY----glp~~ItrcSNNYGPyqfpEKlIP~~I 197 (340)
T COG1088 136 --------------DDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY----GLPATITRCSNNYGPYQFPEKLIPLMI 197 (340)
T ss_pred --------------CCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc----CCceEEecCCCCcCCCcCchhhhHHHH
Confidence 11134566788999999999999999999999887 999999999887787554432 12111
Q ss_pred --hhc----chh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 282 --LLF----PPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 282 --~~~----~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.+. +.. .....+..+-++|=++++..++... .-|+.+...+.
T Consensus 198 ~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg---~~GE~YNIgg~ 246 (340)
T COG1088 198 INALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKG---KIGETYNIGGG 246 (340)
T ss_pred HHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcC---cCCceEEeCCC
Confidence 000 000 0001122567899999999888763 34888887775
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.5e-15 Score=132.86 Aligned_cols=168 Identities=15% Similarity=0.143 Sum_probs=129.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++|||||+|.||.+++..|++.| +.|++++.-...-....... ...++++|+.|.+.+++++++. ++|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G-~~vvV~DNL~~g~~~~v~~~-----~~~f~~gDi~D~~~L~~vf~~~-----~id 69 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTG-HEVVVLDNLSNGHKIALLKL-----QFKFYEGDLLDRALLTAVFEEN-----KID 69 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCC-CeEEEEecCCCCCHHHhhhc-----cCceEEeccccHHHHHHHHHhc-----CCC
Confidence 369999999999999999999999 68888887543333332221 1689999999999988888864 799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
.|||.||...-+ .+.+.-.+.++.|+.|++.|++++..+-.+ +|||-||.+.+. . |
T Consensus 70 aViHFAa~~~Vg-----ESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~------~~vFSStAavYG-~-----p------- 125 (329)
T COG1087 70 AVVHFAASISVG-----ESVQNPLKYYDNNVVGTLNLIEAMLQTGVK------KFIFSSTAAVYG-E-----P------- 125 (329)
T ss_pred EEEECccccccc-----hhhhCHHHHHhhchHhHHHHHHHHHHhCCC------EEEEecchhhcC-C-----C-------
Confidence 999999987432 255666788999999999999998776543 788877766542 2 1
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEec
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 263 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~ 263 (358)
...+..|..+..+...||.||.+.+.+.+.+++.. +.++.+++
T Consensus 126 -----------~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~~a~----~~~~v~LR 168 (329)
T COG1087 126 -----------TTSPISETSPLAPINPYGRSKLMSEEILRDAAKAN----PFKVVILR 168 (329)
T ss_pred -----------CCcccCCCCCCCCCCcchhHHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 22455666677788899999999999999998775 56766663
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-14 Score=134.99 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=143.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHH---HHHHHHhcCC-------C-CceEEEEecCCCH------H
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKA---ERAAKSAGMA-------K-ENYTIMHLDLASL------D 108 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~---~~~~~~~~~~-------~-~~i~~~~~Dl~~~------~ 108 (358)
++|||||||+||+++++.|+++|. .+|+++.|+.+.. +...+.+... . .++.++.+|++++ +
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 589999999999999999999983 2788888875422 1222222110 1 4789999999864 2
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
....+. ..+|+|||||+..... ..++..+++|+.++..+++.+... + ..+++++||...
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~--------~~~~~~~~~nv~g~~~ll~~a~~~----~--~~~~v~iSS~~v 139 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV--------YPYSELRAANVLGTREVLRLAASG----R--AKPLHYVSTISV 139 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC--------CcHHHHhhhhhHHHHHHHHHHhhC----C--CceEEEEccccc
Confidence 333222 3699999999976321 124567789999999988877542 1 136999999876
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
+..... .+ ....+ .. ..........|+.||.+.+.+++.++. .|+++++++||.+.
T Consensus 140 ~~~~~~--~~--~~~~~--------------~~-~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~i~Rpg~v~ 195 (367)
T TIGR01746 140 LAAIDL--ST--VTEDD--------------AI-VTPPPGLAGGYAQSKWVAELLVREASD-----RGLPVTIVRPGRIL 195 (367)
T ss_pred cCCcCC--CC--ccccc--------------cc-cccccccCCChHHHHHHHHHHHHHHHh-----cCCCEEEECCCcee
Confidence 531100 00 00000 00 000112345799999998887765432 38999999999998
Q ss_pred CCcccccch--hhhhhhcc------hhHHhh--hcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 269 TTGLFREHI--PLFRLLFP------PFQKYI--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 269 t~~~~~~~~--~~~~~~~~------~~~~~~--~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
++....... .....+.. .+.... ...++.+++++++++.++..+....+|..+...++
T Consensus 196 G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~~~~v~~~ 263 (367)
T TIGR01746 196 GNSYTGAINSSDILWRMVKGCLALGAYPDSPELTEDLTPVDYVARAIVALSSQPAASAGGPVFHVVNP 263 (367)
T ss_pred ecCCCCCCCchhHHHHHHHHHHHhCCCCCCCccccCcccHHHHHHHHHHHHhCCCcccCCceEEecCC
Confidence 862211110 11111100 000000 12267899999999999877653234666665553
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-14 Score=138.67 Aligned_cols=217 Identities=15% Similarity=0.143 Sum_probs=141.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH--HHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~--~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
...+++++|||||+|+||+++++.|+++| +.|+++.|+...... ....+.....++.++++|++|.+++.++++.+
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~- 133 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVRELVRRG-YNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSE- 133 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHh-
Confidence 44678899999999999999999999999 699999998654321 11111112246889999999999999888754
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
..++|+||||+|..... . ...+++|+.++..+++++.. .+ .+++|++||.....
T Consensus 134 --~~~~D~Vi~~aa~~~~~------~----~~~~~vn~~~~~~ll~aa~~----~g--v~r~V~iSS~~v~~-------- 187 (390)
T PLN02657 134 --GDPVDVVVSCLASRTGG------V----KDSWKIDYQATKNSLDAGRE----VG--AKHFVLLSAICVQK-------- 187 (390)
T ss_pred --CCCCcEEEECCccCCCC------C----ccchhhHHHHHHHHHHHHHH----cC--CCEEEEEeeccccC--------
Confidence 12699999999853211 0 12356788888877777643 22 25899999976431
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+...|..+|...+...+. ...++....|+|+.+..+.. . ...
T Consensus 188 ------------------------------p~~~~~~sK~~~E~~l~~------~~~gl~~tIlRp~~~~~~~~-~-~~~ 229 (390)
T PLN02657 188 ------------------------------PLLEFQRAKLKFEAELQA------LDSDFTYSIVRPTAFFKSLG-G-QVE 229 (390)
T ss_pred ------------------------------cchHHHHHHHHHHHHHHh------ccCCCCEEEEccHHHhcccH-H-HHH
Confidence 233577888887665543 13589999999988765311 1 000
Q ss_pred hhhhhcc--hhHHhh--hcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 LFRLLFP--PFQKYI--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~~~~~~~--~~~~~~--~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
....... .+..-. ....+..+|+|..++.++.++.. .|+.+...+
T Consensus 230 ~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~--~~~~~~Igg 278 (390)
T PLN02657 230 IVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESK--INKVLPIGG 278 (390)
T ss_pred hhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccc--cCCEEEcCC
Confidence 0000000 110000 01247889999999999876533 456676655
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=2e-14 Score=148.48 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=148.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHH-HHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~-i~~~~~~~~~~ 120 (358)
.+++++|||||+|.||++++++|+++ | +.|+.++|........ .. ..++.++.+|+++..+ ++++++
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g-~~V~~l~r~~~~~~~~---~~--~~~~~~~~gDl~d~~~~l~~~l~----- 381 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDN-YEVYGLDIGSDAISRF---LG--HPRFHFVEGDISIHSEWIEYHIK----- 381 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCC-cEEEEEeCCchhhhhh---cC--CCceEEEeccccCcHHHHHHHhc-----
Confidence 56789999999999999999999986 6 7999999976432211 11 2468889999998654 333332
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|+|||+|+...... ..+..+..+++|+.++..+++++... + .++|++||...+. ... ..+
T Consensus 382 --~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~~t~~ll~a~~~~----~---~~~V~~SS~~vyg-~~~-~~~-- 443 (660)
T PRK08125 382 --KCDVVLPLVAIATPIE-----YTRNPLRVFELDFEENLKIIRYCVKY----N---KRIIFPSTSEVYG-MCT-DKY-- 443 (660)
T ss_pred --CCCEEEECccccCchh-----hccCHHHHHHhhHHHHHHHHHHHHhc----C---CeEEEEcchhhcC-CCC-CCC--
Confidence 6899999999764321 11223457889999999999888643 1 3899999976442 100 000
Q ss_pred CCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc-----
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR----- 274 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~----- 274 (358)
++ +.. ......+. .....|+.||.+.+.+++.+++++ |+.+..++|+.+.+|....
T Consensus 444 --~~----------E~~--~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~~~~~~~~~ 505 (660)
T PRK08125 444 --FD----------EDT--SNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE----GLRFTLFRPFNWMGPRLDNLNAAR 505 (660)
T ss_pred --cC----------ccc--cccccCCCCCCccchHHHHHHHHHHHHHHHHhc----CCceEEEEEceeeCCCcccccccc
Confidence 00 000 00000111 234579999999999888876654 8999999999999985321
Q ss_pred --c---chhhhhhhc--chhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 275 --E---HIPLFRLLF--PPFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 275 --~---~~~~~~~~~--~~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. ...+..... .... ....+.++.++|++++++.++........|..+...+
T Consensus 506 ~~~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~iyni~~ 567 (660)
T PRK08125 506 IGSSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNRCDGQIINIGN 567 (660)
T ss_pred ccccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccccCCeEEEcCC
Confidence 0 001111111 0000 0111337889999999999887542223455554443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-14 Score=145.40 Aligned_cols=229 Identities=17% Similarity=0.174 Sum_probs=146.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..++|+||||||+|.||+++++.|+++| .+.|+.++|.. ......... ....++.++.+|+++.+.+.+++..
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~--~~~~~v~~~~~Dl~d~~~~~~~~~~-- 78 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPS--KSSPNFKFVKGDIASADLVNYLLIT-- 78 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhc--ccCCCeEEEECCCCChHHHHHHHhh--
Confidence 3567899999999999999999999984 15888888752 122221111 1234688999999999877665432
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
.++|+|||+|+...... ........+++|+.++..+++++...- . ..++|++||...+. ..... +
T Consensus 79 ---~~~D~ViHlAa~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~a~~~~~---~--vkr~I~~SS~~vyg-~~~~~-~ 143 (668)
T PLN02260 79 ---EGIDTIMHFAAQTHVDN-----SFGNSFEFTKNNIYGTHVLLEACKVTG---Q--IRRFIHVSTDEVYG-ETDED-A 143 (668)
T ss_pred ---cCCCEEEECCCccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHhcC---C--CcEEEEEcchHHhC-CCccc-c
Confidence 36999999999864321 122334667899999999988875431 1 25999999976542 11000 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-ch
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HI 277 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~-~~ 277 (358)
. ....+..+..+...|+.+|.+.+.+++.++++. ++.+.+++|+.|.++..... ..
T Consensus 144 ~-------------------~~~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~----~l~~vilR~~~VyGp~~~~~~~i 200 (668)
T PLN02260 144 D-------------------VGNHEASQLLPTNPYSATKAGAEMLVMAYGRSY----GLPVITTRGNNVYGPNQFPEKLI 200 (668)
T ss_pred c-------------------cCccccCCCCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECcccccCcCCCcccHH
Confidence 0 000111122345579999999999998877654 88999999999999854321 11
Q ss_pred hhh-hhhc--chhH----HhhhcCccchhHHhhhhhhhhcCC
Q 018331 278 PLF-RLLF--PPFQ----KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 278 ~~~-~~~~--~~~~----~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
+.+ .... ..+. ......++..+|+|++++.++...
T Consensus 201 ~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~ 242 (668)
T PLN02260 201 PKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKG 242 (668)
T ss_pred HHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcC
Confidence 111 1100 0000 001123688999999999888653
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-14 Score=134.15 Aligned_cols=234 Identities=13% Similarity=0.128 Sum_probs=144.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC-CHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~-~~~~i~~~~~~~~~~~~~ 123 (358)
+++|||||+|.||+++++.|+++ | +.|+.++|+....... .. ...+.++.+|++ +.+.+.++++ +
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~-~~V~~~~r~~~~~~~~---~~--~~~~~~~~~Dl~~~~~~~~~~~~-------~ 68 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTD-WEVYGMDMQTDRLGDL---VN--HPRMHFFEGDITINKEWIEYHVK-------K 68 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCC-CeEEEEeCcHHHHHHh---cc--CCCeEEEeCCCCCCHHHHHHHHc-------C
Confidence 46999999999999999999986 6 6999999875432221 11 235889999998 6665555443 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+...... ..+.-+..+++|+.++..++.++... + .++|++||...+. ..... + +
T Consensus 69 ~d~ViH~aa~~~~~~-----~~~~p~~~~~~n~~~~~~ll~aa~~~----~---~~~v~~SS~~vyg-~~~~~-~----~ 130 (347)
T PRK11908 69 CDVILPLVAIATPAT-----YVKQPLRVFELDFEANLPIVRSAVKY----G---KHLVFPSTSEVYG-MCPDE-E----F 130 (347)
T ss_pred CCEEEECcccCChHH-----hhcCcHHHHHHHHHHHHHHHHHHHhc----C---CeEEEEecceeec-cCCCc-C----c
Confidence 899999999753321 11223566789999999888877532 2 4999999986442 11100 0 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc------ch
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE------HI 277 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~------~~ 277 (358)
.+ ...+........+...|+.||.+.+.+++.++.+ .|+.+..++|+.+.+++.... ..
T Consensus 131 ~e-----------e~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ilR~~~v~Gp~~~~~~~~~~~~~ 195 (347)
T PRK11908 131 DP-----------EASPLVYGPINKPRWIYACSKQLMDRVIWAYGME----EGLNFTLFRPFNWIGPGLDSIYTPKEGSS 195 (347)
T ss_pred Cc-----------cccccccCcCCCccchHHHHHHHHHHHHHHHHHH----cCCCeEEEeeeeeeCCCccCCCccccCCc
Confidence 00 0000000000123447999999988888877655 488899999999988753210 00
Q ss_pred hhhhhhc-----c----hhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 278 PLFRLLF-----P----PFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 278 ~~~~~~~-----~----~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.+...+. . ... ....+.++..+|++++++.++..+.....|..+...+
T Consensus 196 ~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~~yni~~ 253 (347)
T PRK11908 196 RVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGVASGKIYNIGN 253 (347)
T ss_pred chHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccccCCCCeEEeCC
Confidence 1110100 0 000 0112247899999999999987643213355555443
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-13 Score=127.50 Aligned_cols=206 Identities=17% Similarity=0.190 Sum_probs=135.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|.||.+++++|+++| +.|++++|+ .+|+.+.+++.++++.. .+|+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g-~~v~~~~r~---------------------~~d~~~~~~~~~~~~~~-----~~d~ 53 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEG-RVVVALTSS---------------------QLDLTDPEALERLLRAI-----RPDA 53 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcC-CEEEEeCCc---------------------ccCCCCHHHHHHHHHhC-----CCCE
Confidence 37999999999999999999999 699998884 47999999988887642 5899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||++|...... .....+..+++|+.++..+++++... + .++|++||...+... .
T Consensus 54 vi~~a~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~v~~Ss~~vy~~~-~------------ 108 (287)
T TIGR01214 54 VVNTAAYTDVDG-----AESDPEKAFAVNALAPQNLARAAARH----G---ARLVHISTDYVFDGE-G------------ 108 (287)
T ss_pred EEECCccccccc-----cccCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEEeeeeeecCC-C------------
Confidence 999999753211 12234567889999999999887532 2 489999997543210 0
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhhcc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLLFP 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~~~ 285 (358)
..+.++..+..+...|+.+|.+.+.+++.+ +..+.+++|+.+.++....+... +......
T Consensus 109 -----------~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~--------~~~~~ilR~~~v~G~~~~~~~~~~~~~~~~~ 169 (287)
T TIGR01214 109 -----------KRPYREDDATNPLNVYGQSKLAGEQAIRAA--------GPNALIVRTSWLYGGGGGRNFVRTMLRLAGR 169 (287)
T ss_pred -----------CCCCCCCCCCCCcchhhHHHHHHHHHHHHh--------CCCeEEEEeeecccCCCCCCHHHHHHHHhhc
Confidence 001112223334568999999977666543 45789999999988753222211 1111110
Q ss_pred --hhHHh--hhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 286 --PFQKY--ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 286 --~~~~~--~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.+... ....++..+|++++++.++..+. ..+|.|...+
T Consensus 170 ~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~~~~~ni~~ 211 (287)
T TIGR01214 170 GEELRVVDDQIGSPTYAKDLARVIAALLQRLA-RARGVYHLAN 211 (287)
T ss_pred CCCceEecCCCcCCcCHHHHHHHHHHHHhhcc-CCCCeEEEEC
Confidence 00000 11234678999999999987642 2356554433
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.6e-14 Score=131.02 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=133.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh--cCCCcc
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRPLD 125 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~--~~~~iD 125 (358)
+|||||+|.||++++++|+++| +.++++.|+....... ..+.++|+.+..+.+.+++.+.. .++++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g-~~~v~~~~~~~~~~~~----------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d 70 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKG-ITDILVVDNLKDGTKF----------VNLVDLDIADYMDKEDFLAQIMAGDDFGDIE 70 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCC-CceEEEecCCCcchHH----------HhhhhhhhhhhhhHHHHHHHHhcccccCCcc
Confidence 7999999999999999999999 5555554443221111 01234677776666666665543 345799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||..... +... +..++.|+.++..+++++.. .+ .++|++||...+. ....
T Consensus 71 ~Vih~A~~~~~~----~~~~---~~~~~~n~~~t~~ll~~~~~----~~---~~~i~~SS~~vyg-~~~~---------- 125 (308)
T PRK11150 71 AIFHEGACSSTT----EWDG---KYMMDNNYQYSKELLHYCLE----RE---IPFLYASSAATYG-GRTD---------- 125 (308)
T ss_pred EEEECceecCCc----CCCh---HHHHHHHHHHHHHHHHHHHH----cC---CcEEEEcchHHhC-cCCC----------
Confidence 999999865321 1122 34689999999999888753 22 4799999986542 1000
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc--hhhh---
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IPLF--- 280 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~--~~~~--- 280 (358)
...++..+..+...|+.||.+.+.+++.++.+ .++.+.+++|+.+.++...... ....
T Consensus 126 -------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~----~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~ 188 (308)
T PRK11150 126 -------------DFIEEREYEKPLNVYGYSKFLFDEYVRQILPE----ANSQICGFRYFNVYGPREGHKGSMASVAFHL 188 (308)
T ss_pred -------------CCCccCCCCCCCCHHHHHHHHHHHHHHHHHHH----cCCCEEEEeeeeecCCCCCCCCccchhHHHH
Confidence 01112223344567999999988888777654 3899999999999987542211 1110
Q ss_pred -hhhcc-----hhHH--hhhcCccchhHHhhhhhhhhcC
Q 018331 281 -RLLFP-----PFQK--YITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 281 -~~~~~-----~~~~--~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
..... .+.. ...+.++.++|++++++.++..
T Consensus 189 ~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~ 227 (308)
T PRK11150 189 NNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWEN 227 (308)
T ss_pred HHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhc
Confidence 11110 0100 0112468999999999988865
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-13 Score=127.42 Aligned_cols=215 Identities=16% Similarity=0.141 Sum_probs=144.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc-cE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL-DV 126 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i-D~ 126 (358)
+|||||+|.||.+++.+|+++| +.|+.++|......... ..+.++.+|+++.+.+...++ .. |+
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~-------~~~d~ 67 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAG-HDVRGLDRLRDGLDPLL-------SGVEFVVLDLTDRDLVDELAK-------GVPDA 67 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCC-CeEEEEeCCCccccccc-------cccceeeecccchHHHHHHHh-------cCCCE
Confidence 9999999999999999999999 69999999764433221 357889999999865555544 23 99
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+....... ... .....+.+|+.++.++++++... . ..++|+.||...+... ..+
T Consensus 68 vih~aa~~~~~~~---~~~-~~~~~~~~nv~gt~~ll~aa~~~---~---~~~~v~~ss~~~~~~~-~~~---------- 126 (314)
T COG0451 68 VIHLAAQSSVPDS---NAS-DPAEFLDVNVDGTLNLLEAARAA---G---VKRFVFASSVSVVYGD-PPP---------- 126 (314)
T ss_pred EEEccccCchhhh---hhh-CHHHHHHHHHHHHHHHHHHHHHc---C---CCeEEEeCCCceECCC-CCC----------
Confidence 9999998754321 111 34568899999999999999761 1 2588996665544311 000
Q ss_pred ccccccCCCCCCCCCCCC-CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhh--
Q 018331 207 RGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRL-- 282 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~-- 282 (358)
...++. .+......|+.+|.+.+.+++..+.. .|+.+.+++|+.+.+++....... +...
T Consensus 127 ------------~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~~----~~~~~~ilR~~~vyGp~~~~~~~~~~~~~~~ 190 (314)
T COG0451 127 ------------LPIDEDLGPPRPLNPYGVSKLAAEQLLRAYARL----YGLPVVILRPFNVYGPGDKPDLSSGVVSAFI 190 (314)
T ss_pred ------------CCcccccCCCCCCCHHHHHHHHHHHHHHHHHHH----hCCCeEEEeeeeeeCCCCCCCCCcCcHHHHH
Confidence 011111 12222228999999988888888773 489999999999999865554111 1110
Q ss_pred --hcchhHHhhh-------cCccchhHHhhhhhhhhcCCCC
Q 018331 283 --LFPPFQKYIT-------KGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 283 --~~~~~~~~~~-------~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.......... ..++..+|++++++.++..+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~ 231 (314)
T COG0451 191 RQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDG 231 (314)
T ss_pred HHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCC
Confidence 1111100001 1256799999999999987654
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-13 Score=131.11 Aligned_cols=220 Identities=15% Similarity=0.052 Sum_probs=141.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+++++|||||+|.||+++++.|.++| +.|+.++|...... ........++.+|+++.+.+..+++ +
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G-~~V~~v~r~~~~~~------~~~~~~~~~~~~Dl~d~~~~~~~~~-------~ 85 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEG-HYIIASDWKKNEHM------SEDMFCHEFHLVDLRVMENCLKVTK-------G 85 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCC-CEEEEEEecccccc------ccccccceEEECCCCCHHHHHHHHh-------C
Confidence 67899999999999999999999999 69999998642110 1011124678899999887766654 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+....... ........+..|+.++.++++++... + -.++|++||...+. ......+.
T Consensus 86 ~D~Vih~Aa~~~~~~~----~~~~~~~~~~~N~~~t~nll~aa~~~----~--vk~~V~~SS~~vYg-~~~~~~~~---- 150 (370)
T PLN02695 86 VDHVFNLAADMGGMGF----IQSNHSVIMYNNTMISFNMLEAARIN----G--VKRFFYASSACIYP-EFKQLETN---- 150 (370)
T ss_pred CCEEEEcccccCCccc----cccCchhhHHHHHHHHHHHHHHHHHh----C--CCEEEEeCchhhcC-CccccCcC----
Confidence 8999999987532211 11122345678999999998887533 1 14899999976542 11000000
Q ss_pred cccccccccCCCCCCCCCCCC--CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-----
Q 018331 204 GDLRGFAGGLNGLNSSSMIDG--GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 276 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~----- 276 (358)
.+..+. .+..+...|+.+|.+.+.+++.++..+ |+.+..++|+.+.+|......
T Consensus 151 ---------------~~~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~~~~~~~~~~~ 211 (370)
T PLN02695 151 ---------------VSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDF----GIECRIGRFHNIYGPFGTWKGGREKA 211 (370)
T ss_pred ---------------CCcCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEECCccCCCCCcccccccc
Confidence 001111 133445689999999888888776554 899999999999998532110
Q ss_pred h-hhhhhhc---chhHH----hhhcCccchhHHhhhhhhhhcC
Q 018331 277 I-PLFRLLF---PPFQK----YITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 277 ~-~~~~~~~---~~~~~----~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
. .+..... ..+.. .....++..+|++++++.++..
T Consensus 212 ~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~ 254 (370)
T PLN02695 212 PAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKS 254 (370)
T ss_pred HHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhc
Confidence 0 1111111 11100 0112368899999999988765
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.54 E-value=9e-13 Score=123.78 Aligned_cols=213 Identities=13% Similarity=0.013 Sum_probs=135.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
+|||||+|.||.++++.|+++|...|++++|..... .. ..+. ...+..|+.+.+.++.+.+. .+.++|+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~~-----~~~~~~d~~~~~~~~~~~~~---~~~~~D~v 70 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNLA-----DLVIADYIDKEDFLDRLEKG---AFGKIEAI 70 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhhh-----heeeeccCcchhHHHHHHhh---ccCCCCEE
Confidence 689999999999999999999943687777654221 11 1111 13566788887766655442 34579999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||+|+.... ..+..+..+++|+.++..+++++... + .++|++||...+. ....
T Consensus 71 vh~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~~~~~~----~---~~~v~~SS~~vy~-~~~~------------ 123 (314)
T TIGR02197 71 FHQGACSDT-------TETDGEYMMENNYQYSKRLLDWCAEK----G---IPFIYASSAATYG-DGEA------------ 123 (314)
T ss_pred EECccccCc-------cccchHHHHHHHHHHHHHHHHHHHHh----C---CcEEEEccHHhcC-CCCC------------
Confidence 999996421 22345677899999999999887642 2 4899999976442 1000
Q ss_pred cccccCCCCCCCCCCCCC-CCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc--hh----hh
Q 018331 208 GFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--IP----LF 280 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~--~~----~~ 280 (358)
+..+.. +..+...|+.+|.+.+.+++....+. ..++.+..++|+.+.++...... .. +.
T Consensus 124 ------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~~lR~~~vyG~~~~~~~~~~~~~~~~~ 189 (314)
T TIGR02197 124 ------------GFREGRELERPLNVYGYSKFLFDQYVRRRVLPE--ALSAQVVGLRYFNVYGPREYHKGKMASVAFHLF 189 (314)
T ss_pred ------------CcccccCcCCCCCHHHHHHHHHHHHHHHHhHhh--ccCCceEEEEEeeccCCCCCCCCCcccHHHHHH
Confidence 000111 12245579999999888887643321 24678999999999887532211 01 11
Q ss_pred hhhc-----chhH-------HhhhcCccchhHHhhhhhhhhcC
Q 018331 281 RLLF-----PPFQ-------KYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 281 ~~~~-----~~~~-------~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.... ..+. ......++..+|++++++.++..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~ 232 (314)
T TIGR02197 190 NQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN 232 (314)
T ss_pred HHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc
Confidence 1110 0000 00012478899999999999876
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-13 Score=125.70 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=130.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+++||||||.||++++++|+++| +.|+++.|+.++..... ...+.++.+|+++.+++.++++ ++|+
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g-~~V~~l~R~~~~~~~l~------~~~v~~v~~Dl~d~~~l~~al~-------g~d~ 67 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEG-YQVRCLVRNLRKASFLK------EWGAELVYGDLSLPETLPPSFK-------GVTA 67 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCC-CeEEEEEcChHHhhhHh------hcCCEEEECCCCCHHHHHHHHC-------CCCE
Confidence 69999999999999999999999 69999999865432221 1357899999999998877665 6899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+++.... +.....++|+.++.++.+++...-. .++|++||.....
T Consensus 68 Vi~~~~~~~~----------~~~~~~~~~~~~~~~l~~aa~~~gv------kr~I~~Ss~~~~~---------------- 115 (317)
T CHL00194 68 IIDASTSRPS----------DLYNAKQIDWDGKLALIEAAKAAKI------KRFIFFSILNAEQ---------------- 115 (317)
T ss_pred EEECCCCCCC----------CccchhhhhHHHHHHHHHHHHHcCC------CEEEEeccccccc----------------
Confidence 9998764311 1123566888888888887754322 4999998864321
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
+ +...|..+|...+.+.+ ..++....++|+.+..........+.... ...
T Consensus 116 --------------------~-~~~~~~~~K~~~e~~l~--------~~~l~~tilRp~~~~~~~~~~~~~~~~~~-~~~ 165 (317)
T CHL00194 116 --------------------Y-PYIPLMKLKSDIEQKLK--------KSGIPYTIFRLAGFFQGLISQYAIPILEK-QPI 165 (317)
T ss_pred --------------------c-CCChHHHHHHHHHHHHH--------HcCCCeEEEeecHHhhhhhhhhhhhhccC-Cce
Confidence 0 12346778877554432 24788999999866432111101111000 000
Q ss_pred h--HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 287 F--QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 287 ~--~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. .......++..+|+|++++.++..+.. .|+.+...++
T Consensus 166 ~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~--~~~~~ni~g~ 205 (317)
T CHL00194 166 WITNESTPISYIDTQDAAKFCLKSLSLPET--KNKTFPLVGP 205 (317)
T ss_pred EecCCCCccCccCHHHHHHHHHHHhcCccc--cCcEEEecCC
Confidence 0 000112356789999999999876543 4666666554
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-12 Score=128.08 Aligned_cols=219 Identities=11% Similarity=0.084 Sum_probs=137.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.++||||||+|.||++++++|+++| +.|++++|...........+. ...++.++..|+.+.. + .+
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G-~~V~~ldr~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~-----~-------~~ 184 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRG-DEVIVIDNFFTGRKENLVHLF-GNPRFELIRHDVVEPI-----L-------LE 184 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCCCccHhHhhhhc-cCCceEEEECcccccc-----c-------cC
Confidence 34589999999999999999999999 699999885322111111111 1235778888886542 1 25
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+....... ..+-...+++|+.++..++.++... + .++|++||...+. .... .| +
T Consensus 185 ~D~ViHlAa~~~~~~~-----~~~p~~~~~~Nv~gT~nLleaa~~~----g---~r~V~~SS~~VYg-~~~~-~p----~ 246 (436)
T PLN02166 185 VDQIYHLACPASPVHY-----KYNPVKTIKTNVMGTLNMLGLAKRV----G---ARFLLTSTSEVYG-DPLE-HP----Q 246 (436)
T ss_pred CCEEEECceeccchhh-----ccCHHHHHHHHHHHHHHHHHHHHHh----C---CEEEEECcHHHhC-CCCC-CC----C
Confidence 8999999987533211 1123567889999999999888643 2 3899999876442 1000 00 0
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----hh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI----PL 279 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~----~~ 279 (358)
+ +.. .....+......|+.+|.+.+.+++.+++.. ++.+..++|+.+.++....... .+
T Consensus 247 ~----------E~~---~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~----~l~~~ilR~~~vYGp~~~~~~~~~i~~~ 309 (436)
T PLN02166 247 K----------ETY---WGNVNPIGERSCYDEGKRTAETLAMDYHRGA----GVEVRIARIFNTYGPRMCLDDGRVVSNF 309 (436)
T ss_pred C----------ccc---cccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEEccccCCCCCCCccchHHHH
Confidence 0 000 0001233345679999999888888776553 8999999999998885421111 11
Q ss_pred hhhhcc--hhHH----hhhcCccchhHHhhhhhhhhcC
Q 018331 280 FRLLFP--PFQK----YITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 280 ~~~~~~--~~~~----~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
...... .+.. ...+.++..+|++++++.++..
T Consensus 310 i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~ 347 (436)
T PLN02166 310 VAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEG 347 (436)
T ss_pred HHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhc
Confidence 111111 1100 0123478899999999988864
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=128.99 Aligned_cols=218 Identities=13% Similarity=0.114 Sum_probs=136.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++++||||||+|.||++++++|+++| +.|++++|.... .+.....+ ...++.++..|+.+.. + .
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G-~~V~~ld~~~~~~~~~~~~~~--~~~~~~~i~~D~~~~~-----l-------~ 182 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARG-DSVIVVDNFFTGRKENVMHHF--SNPNFELIRHDVVEPI-----L-------L 182 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCc-CEEEEEeCCCccchhhhhhhc--cCCceEEEECCccChh-----h-------c
Confidence 56889999999999999999999999 699888765321 11111111 1245778888986642 1 2
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
.+|+|||+|+...... ........+++|+.++..+++++... + .++|++||...+... .. .|..
T Consensus 183 ~~D~ViHlAa~~~~~~-----~~~~p~~~~~~Nv~gt~nLleaa~~~----g---~r~V~~SS~~VYg~~-~~-~p~~-- 246 (442)
T PLN02206 183 EVDQIYHLACPASPVH-----YKFNPVKTIKTNVVGTLNMLGLAKRV----G---ARFLLTSTSEVYGDP-LQ-HPQV-- 246 (442)
T ss_pred CCCEEEEeeeecchhh-----hhcCHHHHHHHHHHHHHHHHHHHHHh----C---CEEEEECChHHhCCC-CC-CCCC--
Confidence 5899999998753211 11223567899999999999888543 2 489999997655211 00 0000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh----
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP---- 278 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~---- 278 (358)
++ . ..+..+......|+.+|.+.+.+++.+.+.. ++.+..++|+.+.++........
T Consensus 247 -E~-----------~---~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~----g~~~~ilR~~~vyGp~~~~~~~~~v~~ 307 (442)
T PLN02206 247 -ET-----------Y---WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----NVEVRIARIFNTYGPRMCIDDGRVVSN 307 (442)
T ss_pred -cc-----------c---cccCCCCCccchHHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCCCccccchHHH
Confidence 00 0 0001233345689999999888887775553 89999999999988753211111
Q ss_pred hhhhhc--chhHHh----hhcCccchhHHhhhhhhhhcC
Q 018331 279 LFRLLF--PPFQKY----ITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 279 ~~~~~~--~~~~~~----~~~~~~~~~~~a~~i~~l~~~ 311 (358)
+..... ...... ..+.++.++|++++++.++..
T Consensus 308 ~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~ 346 (442)
T PLN02206 308 FVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEG 346 (442)
T ss_pred HHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhc
Confidence 111111 011000 012367899999999988864
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-12 Score=118.57 Aligned_cols=165 Identities=16% Similarity=0.199 Sum_probs=124.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|||||+|.||.+++.+|+++| +.|+.++.-. ..+... +++-..+.++.++++|+.|.+.++++++..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~g-y~v~~vDNl~n~~~~sl~r~-~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~--- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRG-YGVVIVDNLNNSYLESLKRV-RQLLGEGKSVFFVEGDLNDAEALEKLFSEV--- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCC-CcEEEEecccccchhHHHHH-HHhcCCCCceEEEEeccCCHHHHHHHHhhc---
Confidence 5789999999999999999999999 7888876432 222222 333333678999999999999999888865
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|.|+|-|+...-+. +.+.....+..|+.|++.++..+..+-. ..+|+.||..-+. .|..
T Consensus 77 --~fd~V~Hfa~~~~vge-----S~~~p~~Y~~nNi~gtlnlLe~~~~~~~------~~~V~sssatvYG------~p~~ 137 (343)
T KOG1371|consen 77 --KFDAVMHFAALAAVGE-----SMENPLSYYHNNIAGTLNLLEVMKAHNV------KALVFSSSATVYG------LPTK 137 (343)
T ss_pred --CCceEEeehhhhccch-----hhhCchhheehhhhhHHHHHHHHHHcCC------ceEEEecceeeec------Ccce
Confidence 5999999999865432 4455578899999999999988876652 4899998877552 1211
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRF 251 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~ 251 (358)
.++.+..+.. +...|+.+|.+++...+.+...+
T Consensus 138 ------------------ip~te~~~t~~p~~pyg~tK~~iE~i~~d~~~~~ 171 (343)
T KOG1371|consen 138 ------------------VPITEEDPTDQPTNPYGKTKKAIEEIIHDYNKAY 171 (343)
T ss_pred ------------------eeccCcCCCCCCCCcchhhhHHHHHHHHhhhccc
Confidence 3444444554 77899999999888888877665
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=121.19 Aligned_cols=157 Identities=15% Similarity=0.087 Sum_probs=110.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|.||+++++.|+++| . |+.++|.. ..+.+|++|.+.+.++++.. ++|+
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~-V~~~~~~~-----------------~~~~~Dl~d~~~~~~~~~~~-----~~D~ 57 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-N-LIALDVHS-----------------TDYCGDFSNPEGVAETVRKI-----RPDV 57 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-C-EEEecccc-----------------ccccCCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 4 67777742 13457999999988877742 5899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+...... ..+.-+..+++|+.++..+++++... + .++|++||...+.+. .
T Consensus 58 Vih~Aa~~~~~~-----~~~~~~~~~~~N~~~~~~l~~aa~~~----g---~~~v~~Ss~~Vy~~~-~------------ 112 (299)
T PRK09987 58 IVNAAAHTAVDK-----AESEPEFAQLLNATSVEAIAKAANEV----G---AWVVHYSTDYVFPGT-G------------ 112 (299)
T ss_pred EEECCccCCcch-----hhcCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEEccceEECCC-C------------
Confidence 999999864321 11223556789999999999888643 2 489999986644211 0
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
..+..+..+..+...|+.||.+.+.+++.+.. ....++|+++.++.
T Consensus 113 -----------~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~~--------~~~ilR~~~vyGp~ 158 (299)
T PRK09987 113 -----------DIPWQETDATAPLNVYGETKLAGEKALQEHCA--------KHLIFRTSWVYAGK 158 (299)
T ss_pred -----------CCCcCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEecceecCCC
Confidence 00112223444556799999997777654421 34788898888874
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=128.26 Aligned_cols=228 Identities=15% Similarity=0.089 Sum_probs=136.4
Q ss_pred eEEEEcCCCchHHHHHHHHH--hCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHH--HHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALA--ETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSV--RQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La--~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i--~~~~~~~~~~~ 121 (358)
++|||||||.||+++++.|+ ..| +.|++++|+... .......... ..++.++.+|+++.+.. ....+.+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g-~~V~~l~R~~~~-~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l---- 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRRE-ATVHVLVRRQSL-SRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL---- 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCC-CEEEEEECcchH-HHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh----
Confidence 69999999999999999999 578 699999996432 1111111111 24688999999985310 1112222
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
.++|+|||+||..... .+ .....++|+.++..+++++... + ..++|++||...+... . .
T Consensus 76 ~~~D~Vih~Aa~~~~~-----~~---~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~~SS~~v~g~~-~----~-- 134 (657)
T PRK07201 76 GDIDHVVHLAAIYDLT-----AD---EEAQRAANVDGTRNVVELAERL----Q--AATFHHVSSIAVAGDY-E----G-- 134 (657)
T ss_pred cCCCEEEECceeecCC-----CC---HHHHHHHHhHHHHHHHHHHHhc----C--CCeEEEEeccccccCc-c----C--
Confidence 3799999999975322 12 3456788999998888877532 1 2599999998654210 0 0
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 277 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---- 277 (358)
.+.+ . .. ..+......|+.+|...+.+.+. ..|+.+..++|+.+.++.......
T Consensus 135 ~~~e----------~---~~--~~~~~~~~~Y~~sK~~~E~~~~~-------~~g~~~~ilRp~~v~G~~~~g~~~~~~~ 192 (657)
T PRK07201 135 VFRE----------D---DF--DEGQGLPTPYHRTKFEAEKLVRE-------ECGLPWRVYRPAVVVGDSRTGEMDKIDG 192 (657)
T ss_pred cccc----------c---cc--hhhcCCCCchHHHHHHHHHHHHH-------cCCCcEEEEcCCeeeecCCCCccccCCc
Confidence 0000 0 00 00112234699999997777642 248999999999998863221110
Q ss_pred -----hhhhhhcc--h-hHHh----hhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 278 -----PLFRLLFP--P-FQKY----ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 278 -----~~~~~~~~--~-~~~~----~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.....+.. . +... ....++..+++++++..++..+. ..|+.+...+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~--~~g~~~ni~~ 250 (657)
T PRK07201 193 PYYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDG--RDGQTFHLTD 250 (657)
T ss_pred HHHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcC--CCCCEEEeCC
Confidence 00000000 0 0000 01135678999999999887543 3565555544
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-12 Score=120.83 Aligned_cols=204 Identities=16% Similarity=0.122 Sum_probs=129.4
Q ss_pred EEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEE
Q 018331 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLV 128 (358)
Q Consensus 49 lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv 128 (358)
|||||+|.||.++++.|+++| +.|+++.+. ..+|+++.+++.++++.. ++|+||
T Consensus 1 lItGa~GfiG~~l~~~L~~~g-~~v~~~~~~--------------------~~~Dl~~~~~l~~~~~~~-----~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALG-FTNLVLRTH--------------------KELDLTRQADVEAFFAKE-----KPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhCC-CcEEEeecc--------------------ccCCCCCHHHHHHHHhcc-----CCCEEE
Confidence 699999999999999999999 466655332 148999999888877642 589999
Q ss_pred EcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccccc
Q 018331 129 CNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRG 208 (358)
Q Consensus 129 ~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~ 208 (358)
|+|+....... ..+..+..+++|+.++..+++++...- -.++|++||...+. ... ..| .+-++.
T Consensus 55 h~A~~~~~~~~----~~~~~~~~~~~n~~~~~~ll~~~~~~~------~~~~i~~SS~~vyg-~~~-~~~--~~E~~~-- 118 (306)
T PLN02725 55 LAAAKVGGIHA----NMTYPADFIRENLQIQTNVIDAAYRHG------VKKLLFLGSSCIYP-KFA-PQP--IPETAL-- 118 (306)
T ss_pred Eeeeeecccch----hhhCcHHHHHHHhHHHHHHHHHHHHcC------CCeEEEeCceeecC-CCC-CCC--CCHHHh--
Confidence 99997532110 112234567889999999998886542 14899999976432 100 000 000000
Q ss_pred ccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-----chh-hhh
Q 018331 209 FAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-----HIP-LFR 281 (358)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~-----~~~-~~~ 281 (358)
...+. +....|+.||.+.+.+.+.+.++. ++++..++|+.+.++..... ..+ +..
T Consensus 119 --------------~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~~~~~~~~~~~~~~~i~ 180 (306)
T PLN02725 119 --------------LTGPPEPTNEWYAIAKIAGIKMCQAYRIQY----GWDAISGMPTNLYGPHDNFHPENSHVIPALIR 180 (306)
T ss_pred --------------ccCCCCCCcchHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCCCCCCCCCCcccHHHHH
Confidence 00011 222359999999888887776554 89999999999998853210 000 110
Q ss_pred hh-------cc--h-h-HHhhhcCccchhHHhhhhhhhhcCC
Q 018331 282 LL-------FP--P-F-QKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 282 ~~-------~~--~-~-~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.+ .. . + .......++.++|++++++.++...
T Consensus 181 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~ 222 (306)
T PLN02725 181 RFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRY 222 (306)
T ss_pred HHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhcc
Confidence 00 00 0 0 0011224689999999999998754
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.5e-12 Score=108.31 Aligned_cols=182 Identities=20% Similarity=0.252 Sum_probs=123.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
|+|+||||.+|+.++++|+++| ++|+++.|++++.+. ..+++++++|+.+.+++.++++ +.|+|
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~~~~~--------~~~~~~~~~d~~d~~~~~~al~-------~~d~v 64 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPSKAED--------SPGVEIIQGDLFDPDSVKAALK-------GADAV 64 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGHHH--------CTTEEEEESCTTCHHHHHHHHT-------TSSEE
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCchhccc--------ccccccceeeehhhhhhhhhhh-------hcchh
Confidence 6999999999999999999999 699999999877665 4689999999999988888766 79999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
|+++|.... + ...++.++..+++.+ ..++|++|+...+... ...+.+
T Consensus 65 i~~~~~~~~---------~-------------~~~~~~~~~a~~~~~--~~~~v~~s~~~~~~~~-------~~~~~~-- 111 (183)
T PF13460_consen 65 IHAAGPPPK---------D-------------VDAAKNIIEAAKKAG--VKRVVYLSSAGVYRDP-------PGLFSD-- 111 (183)
T ss_dssp EECCHSTTT---------H-------------HHHHHHHHHHHHHTT--SSEEEEEEETTGTTTC-------TSEEEG--
T ss_pred hhhhhhhcc---------c-------------ccccccccccccccc--cccceeeeccccCCCC-------Cccccc--
Confidence 999975421 0 444555555555554 2599999998765311 000000
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchh
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF 287 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~ 287 (358)
...+....|...|...+.+. ...+++...++||++.++.. ... .+...
T Consensus 112 -----------------~~~~~~~~~~~~~~~~e~~~--------~~~~~~~~ivrp~~~~~~~~-~~~-~~~~~----- 159 (183)
T PF13460_consen 112 -----------------EDKPIFPEYARDKREAEEAL--------RESGLNWTIVRPGWIYGNPS-RSY-RLIKE----- 159 (183)
T ss_dssp -----------------GTCGGGHHHHHHHHHHHHHH--------HHSTSEEEEEEESEEEBTTS-SSE-EEESS-----
T ss_pred -----------------ccccchhhhHHHHHHHHHHH--------HhcCCCEEEEECcEeEeCCC-cce-eEEec-----
Confidence 01122345666665543332 22489999999999988742 211 11110
Q ss_pred HHhhhcCccchhHHhhhhhhhhc
Q 018331 288 QKYITKGYVSEDEAGKRLAQVVS 310 (358)
Q Consensus 288 ~~~~~~~~~~~~~~a~~i~~l~~ 310 (358)
........++.+|+|+.++.++.
T Consensus 160 ~~~~~~~~i~~~DvA~~~~~~l~ 182 (183)
T PF13460_consen 160 GGPQGVNFISREDVAKAIVEALE 182 (183)
T ss_dssp TSTTSHCEEEHHHHHHHHHHHHH
T ss_pred cCCCCcCcCCHHHHHHHHHHHhC
Confidence 11111257899999999999875
|
... |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.9e-12 Score=119.14 Aligned_cols=185 Identities=22% Similarity=0.153 Sum_probs=131.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++.+++||||+|.+|+++++.|.+++ ...|.+++..+.......+.......++.++++|+.+..++.+++.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~------- 75 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQ------- 75 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhcc-------
Confidence 56799999999999999999999999 5689999887642221122222135789999999999999888776
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
.. .|||+|+...+.. ...+-+..+++|+.|+.++...+..... .++|++||........
T Consensus 76 ~~-~Vvh~aa~~~~~~-----~~~~~~~~~~vNV~gT~nvi~~c~~~~v------~~lIYtSs~~Vvf~g~--------- 134 (361)
T KOG1430|consen 76 GA-VVVHCAASPVPDF-----VENDRDLAMRVNVNGTLNVIEACKELGV------KRLIYTSSAYVVFGGE--------- 134 (361)
T ss_pred Cc-eEEEeccccCccc-----cccchhhheeecchhHHHHHHHHHHhCC------CEEEEecCceEEeCCe---------
Confidence 56 6777766543321 2225678899999999999988876654 4999999987653110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchh--hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
...+.++..+++.. ..|+.||+.-+.+.+..+. ..+....+++|-.|.+|+-.+
T Consensus 135 --------------~~~n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~----~~~l~T~aLR~~~IYGpgd~~ 190 (361)
T KOG1430|consen 135 --------------PIINGDESLPYPLKHIDPYGESKALAEKLVLEANG----SDDLYTCALRPPGIYGPGDKR 190 (361)
T ss_pred --------------ecccCCCCCCCccccccccchHHHHHHHHHHHhcC----CCCeeEEEEccccccCCCCcc
Confidence 01222333344433 5899999996666665542 357899999999999986544
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=116.72 Aligned_cols=181 Identities=20% Similarity=0.175 Sum_probs=102.1
Q ss_pred EEcCCCchHHHHHHHHHhCCC-cEEEEEecChHH---HHHHHHHhcC----------CCCceEEEEecCCCH------HH
Q 018331 50 ITGASSGLGLATAKALAETGK-WHIIMACRDFLK---AERAAKSAGM----------AKENYTIMHLDLASL------DS 109 (358)
Q Consensus 50 ITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~---~~~~~~~~~~----------~~~~i~~~~~Dl~~~------~~ 109 (358)
||||||.||.+++.+|++++. .+|+...|..+. .+...+.+.. ...+++++.+|++++ ++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999983 289999997533 2333233321 157899999999984 33
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
...+.+ .+|+|||||+...... .++..+++|+.|+..+++.+. ... ..++++||| +..
T Consensus 81 ~~~L~~-------~v~~IiH~Aa~v~~~~--------~~~~~~~~NV~gt~~ll~la~----~~~--~~~~~~iST-a~v 138 (249)
T PF07993_consen 81 YQELAE-------EVDVIIHCAASVNFNA--------PYSELRAVNVDGTRNLLRLAA----QGK--RKRFHYIST-AYV 138 (249)
T ss_dssp HHHHHH-------H--EEEE--SS-SBS---------S--EEHHHHHHHHHHHHHHHT----SSS-----EEEEEE-GGG
T ss_pred hhcccc-------ccceeeecchhhhhcc--------cchhhhhhHHHHHHHHHHHHH----hcc--CcceEEecc-ccc
Confidence 444433 5899999999875432 345578899999999999885 222 249999999 322
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
.+......+...... . ..+..........|..||+.-+.+.+..+.+. |+.+..++||.|-+
T Consensus 139 ~~~~~~~~~~~~~~~------------~--~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~----g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 139 AGSRPGTIEEKVYPE------------E--EDDLDPPQGFPNGYEQSKWVAERLLREAAQRH----GLPVTIYRPGIIVG 200 (249)
T ss_dssp TTS-TTT--SSS-HH------------H----EEE--TTSEE-HHHHHHHHHHHHHHHHHHH-------EEEEEE-EEE-
T ss_pred cCCCCCccccccccc------------c--cccchhhccCCccHHHHHHHHHHHHHHHHhcC----CceEEEEecCcccc
Confidence 111111000000000 0 00001122334599999999998888887664 88999999999977
Q ss_pred C
Q 018331 270 T 270 (358)
Q Consensus 270 ~ 270 (358)
+
T Consensus 201 ~ 201 (249)
T PF07993_consen 201 D 201 (249)
T ss_dssp S
T ss_pred c
Confidence 3
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=115.29 Aligned_cols=186 Identities=22% Similarity=0.216 Sum_probs=122.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH---HHHHHHHhc-------CCCCceEEEEecCC------CHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAG-------MAKENYTIMHLDLA------SLDS 109 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~---~~~~~~~~~-------~~~~~i~~~~~Dl~------~~~~ 109 (358)
+++|+|||||.+|..++.+|+.+---+|+...|-++. .+...+.+. ...+++.++.+|++ +...
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999988763378887775432 223333333 34678999999998 4455
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
++++++ .+|.||||++....-. .+.+....|+.|+..+++.+.-. + ...+.+|||++..
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~v~--------pYs~L~~~NVlGT~evlrLa~~g--k----~Kp~~yVSsisv~ 139 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNHVF--------PYSELRGANVLGTAEVLRLAATG--K----PKPLHYVSSISVG 139 (382)
T ss_pred HHHHhh-------hcceEEecchhhcccC--------cHHHhcCcchHhHHHHHHHHhcC--C----CceeEEEeeeeec
Confidence 566555 6999999999875432 24566779999999999888522 1 1248999998744
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
- . ....-...+++ ..............+|+.||++-+.+++.. .+.|+.+..++||+|-.
T Consensus 140 ~-~-~~~~~~~~~~~-------------~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A-----~~rGLpv~I~Rpg~I~g 199 (382)
T COG3320 140 E-T-EYYSNFTVDFD-------------EISPTRNVGQGLAGGYGRSKWVAEKLVREA-----GDRGLPVTIFRPGYITG 199 (382)
T ss_pred c-c-cccCCCccccc-------------cccccccccCccCCCcchhHHHHHHHHHHH-----hhcCCCeEEEecCeeec
Confidence 2 1 00000111111 000111123345568999999966666544 34599999999999977
Q ss_pred Ccc
Q 018331 270 TGL 272 (358)
Q Consensus 270 ~~~ 272 (358)
+..
T Consensus 200 ds~ 202 (382)
T COG3320 200 DSR 202 (382)
T ss_pred cCc
Confidence 633
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-11 Score=120.97 Aligned_cols=255 Identities=14% Similarity=0.116 Sum_probs=143.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC--CcEEEEEecChH---HHHHHHHHh-------------cCC-----CCceEE
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG--KWHIIMACRDFL---KAERAAKSA-------------GMA-----KENYTI 99 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G--a~~Vi~~~r~~~---~~~~~~~~~-------------~~~-----~~~i~~ 99 (358)
++||+++||||||.||+.++..|++.+ ..+|++..|... ..+....++ ... ..++.+
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 789999999999999999999999764 236788888642 111111111 000 157899
Q ss_pred EEecCCC-------HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhc
Q 018331 100 MHLDLAS-------LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQ 172 (358)
Q Consensus 100 ~~~Dl~~-------~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~ 172 (358)
+.+|++. .+.+..+++ .+|+|||+|+..... +..+..+++|+.|+..+++++...-.
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~~--------~~~~~~~~~Nv~gt~~ll~~a~~~~~- 152 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNFD--------ERYDVALGINTLGALNVLNFAKKCVK- 152 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCCc--------CCHHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 9999984 333444443 589999999986321 23567889999999999988864311
Q ss_pred CCCCCCeEEEEecCCCCCCCc---CCCC-CCCCCcc-----ccc---c-----ccccCCC-CCCCC---------CCCCC
Q 018331 173 SDYPSKRLIIVGSITGNTNTL---AGNV-PPKANLG-----DLR---G-----FAGGLNG-LNSSS---------MIDGG 225 (358)
Q Consensus 173 ~~~~~g~iv~vsS~~~~~~~~---~~~~-~~~~~~~-----~~~---~-----~~~~~~~-~~~~~---------~~~~~ 225 (358)
..++|++||...+.... ...+ |...++. |++ . +....+. ..... .....
T Consensus 153 ----~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (491)
T PLN02996 153 ----VKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAK 228 (491)
T ss_pred ----CCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHH
Confidence 14899999876542211 0111 1111110 110 0 0000000 00000 00000
Q ss_pred CCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh-----------cchhH-----H
Q 018331 226 DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL-----------FPPFQ-----K 289 (358)
Q Consensus 226 ~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~-----------~~~~~-----~ 289 (358)
.......|+.||++.+.+++.. . .++.+..++|+.|.++.. .....+.... ..... .
T Consensus 229 ~~~~pn~Y~~TK~~aE~lv~~~-----~-~~lpv~i~RP~~V~G~~~-~p~~gwi~~~~~~~~i~~~~~~g~~~~~~gdg 301 (491)
T PLN02996 229 LHGWPNTYVFTKAMGEMLLGNF-----K-ENLPLVIIRPTMITSTYK-EPFPGWIEGLRTIDSVIVGYGKGKLTCFLADP 301 (491)
T ss_pred hCCCCCchHhhHHHHHHHHHHh-----c-CCCCEEEECCCEeccCCc-CCCCCcccchhhHHHHHHHhccceEeEEecCC
Confidence 0111236999999987777543 2 379999999999988642 2111111000 00000 0
Q ss_pred hhhcCccchhHHhhhhhhhhcCCC-CCCCceeeecC
Q 018331 290 YITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWN 324 (358)
Q Consensus 290 ~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d 324 (358)
.....++.+++++++++.++.... ....+..+.+.
T Consensus 302 ~~~~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~ 337 (491)
T PLN02996 302 NSVLDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVG 337 (491)
T ss_pred CeecceecccHHHHHHHHHHHHhhccCCCCcEEEec
Confidence 011336889999999998876531 11234455544
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-10 Score=95.39 Aligned_cols=219 Identities=14% Similarity=0.168 Sum_probs=155.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc--CC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--GR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~--~~ 122 (358)
.++++|.||-|.+|.+++.+|-.++ |-|.-++.++.+.. +.-.++..|-+=.++-+.+.++.-+. ..
T Consensus 3 agrVivYGGkGALGSacv~~Fkann-ywV~siDl~eNe~A----------d~sI~V~~~~swtEQe~~v~~~vg~sL~ge 71 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANN-YWVLSIDLSENEQA----------DSSILVDGNKSWTEQEQSVLEQVGSSLQGE 71 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcC-eEEEEEeecccccc----------cceEEecCCcchhHHHHHHHHHHHHhhccc
Confidence 4579999999999999999999999 79988888753321 12234445555556666777776664 34
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|.|+|-||.+..+..-+..-..+-+-++...+.....-.+.+..+++. |-++-++......
T Consensus 72 kvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~-----GGLL~LtGAkaAl------------ 134 (236)
T KOG4022|consen 72 KVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP-----GGLLQLTGAKAAL------------ 134 (236)
T ss_pred ccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC-----Cceeeeccccccc------------
Confidence 89999999999866543222222344556666777777777777777775 4555555544332
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhh-cccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF-HEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~-~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+.|++.+|+.+|+|+..++++|+.+- +-++|-.+.+|.|=..+|||. +...|..
T Consensus 135 ----------------------~gTPgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMN-RKwMP~A- 190 (236)
T KOG4022|consen 135 ----------------------GGTPGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMN-RKWMPNA- 190 (236)
T ss_pred ----------------------CCCCcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCccc-cccCCCC-
Confidence 467899999999999999999998774 236788899999999999955 4332311
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.| ....+.+.+++..+....+.+...+|..+...
T Consensus 191 ----Df-----ssWTPL~fi~e~flkWtt~~~RPssGsLlqi~ 224 (236)
T KOG4022|consen 191 ----DF-----SSWTPLSFISEHFLKWTTETSRPSSGSLLQIT 224 (236)
T ss_pred ----cc-----cCcccHHHHHHHHHHHhccCCCCCCCceEEEE
Confidence 11 22457788999999888887777888887543
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.2e-12 Score=116.19 Aligned_cols=192 Identities=20% Similarity=0.202 Sum_probs=122.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|-||.++++.|.++| +.|+.+.|+ .+|+++.+++.+++++. ++|+
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~-~~v~~~~r~---------------------~~dl~d~~~~~~~~~~~-----~pd~ 54 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERG-YEVIATSRS---------------------DLDLTDPEAVAKLLEAF-----KPDV 54 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTS-EEEEEESTT---------------------CS-TTSHHHHHHHHHHH-------SE
T ss_pred EEEEECCCCHHHHHHHHHHhhCC-CEEEEeCch---------------------hcCCCCHHHHHHHHHHh-----CCCe
Confidence 69999999999999999999999 699999886 69999999999998876 6999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||..... .-...-+..+.+|+.++..+.+.+... +.++|++||..-.-+.
T Consensus 55 Vin~aa~~~~~-----~ce~~p~~a~~iN~~~~~~la~~~~~~-------~~~li~~STd~VFdG~-------------- 108 (286)
T PF04321_consen 55 VINCAAYTNVD-----ACEKNPEEAYAINVDATKNLAEACKER-------GARLIHISTDYVFDGD-------------- 108 (286)
T ss_dssp EEE------HH-----HHHHSHHHHHHHHTHHHHHHHHHHHHC-------T-EEEEEEEGGGS-SS--------------
T ss_pred EeccceeecHH-----hhhhChhhhHHHhhHHHHHHHHHHHHc-------CCcEEEeeccEEEcCC--------------
Confidence 99999986221 122345678899999999999988542 2699999998644211
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
...+..+..+..+...||.+|...+...+.. .+ ....+++|++.++ ...++. ..+...
T Consensus 109 ----------~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~-----~~---~~~IlR~~~~~g~-~~~~~~---~~~~~~ 166 (286)
T PF04321_consen 109 ----------KGGPYTEDDPPNPLNVYGRSKLEGEQAVRAA-----CP---NALILRTSWVYGP-SGRNFL---RWLLRR 166 (286)
T ss_dssp ----------TSSSB-TTS----SSHHHHHHHHHHHHHHHH------S---SEEEEEE-SEESS-SSSSHH---HHHHHH
T ss_pred ----------cccccccCCCCCCCCHHHHHHHHHHHHHHHh-----cC---CEEEEecceeccc-CCCchh---hhHHHH
Confidence 1111223344556789999999977666642 11 6778889998876 222221 111111
Q ss_pred hH--------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 287 FQ--------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 287 ~~--------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
+. .......+..+++|+.+..++....
T Consensus 167 ~~~~~~i~~~~d~~~~p~~~~dlA~~i~~l~~~~~ 201 (286)
T PF04321_consen 167 LRQGEPIKLFDDQYRSPTYVDDLARVILELIEKNL 201 (286)
T ss_dssp HHCTSEEEEESSCEE--EEHHHHHHHHHHHHHHHH
T ss_pred HhcCCeeEeeCCceeCCEEHHHHHHHHHHHHHhcc
Confidence 10 0011234678999999999987653
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-10 Score=102.96 Aligned_cols=193 Identities=17% Similarity=0.148 Sum_probs=131.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
+||||++|-+|.++++.|. .+ +.|+.++|.. +|+++.+.+.+++.+. ++|+|
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~-~~v~a~~~~~---------------------~Ditd~~~v~~~i~~~-----~PDvV 54 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GE-FEVIATDRAE---------------------LDITDPDAVLEVIRET-----RPDVV 54 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CC-ceEEeccCcc---------------------ccccChHHHHHHHHhh-----CCCEE
Confidence 9999999999999999999 45 6899888863 9999999999999876 79999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||+|++..-.. -..+-+..+.+|..++.++.+++-.. +.++|++|+-.-.-|..
T Consensus 55 In~AAyt~vD~-----aE~~~e~A~~vNa~~~~~lA~aa~~~-------ga~lVhiSTDyVFDG~~-------------- 108 (281)
T COG1091 55 INAAAYTAVDK-----AESEPELAFAVNATGAENLARAAAEV-------GARLVHISTDYVFDGEK-------------- 108 (281)
T ss_pred EECcccccccc-----ccCCHHHHHHhHHHHHHHHHHHHHHh-------CCeEEEeecceEecCCC--------------
Confidence 99999974432 12235778999999999999999654 36999999865432111
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchh
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPF 287 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~ 287 (358)
..+-.+++...+...||.||.+-+..++.. +-+...++.+++-+. ...++....-.+....
T Consensus 109 ----------~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~--------~~~~~I~Rtswv~g~-~g~nFv~tml~la~~~ 169 (281)
T COG1091 109 ----------GGPYKETDTPNPLNVYGRSKLAGEEAVRAA--------GPRHLILRTSWVYGE-YGNNFVKTMLRLAKEG 169 (281)
T ss_pred ----------CCCCCCCCCCCChhhhhHHHHHHHHHHHHh--------CCCEEEEEeeeeecC-CCCCHHHHHHHHhhcC
Confidence 011223345567789999999966666544 235566667777664 2233322111111100
Q ss_pred H-----HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 288 Q-----KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 288 ~-----~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
. ..-........++|+.|..++....
T Consensus 170 ~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~ 200 (281)
T COG1091 170 KELKVVDDQYGSPTYTEDLADAILELLEKEK 200 (281)
T ss_pred CceEEECCeeeCCccHHHHHHHHHHHHhccc
Confidence 0 0001123678999999999887653
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.7e-10 Score=103.88 Aligned_cols=186 Identities=15% Similarity=0.165 Sum_probs=146.0
Q ss_pred CCeEEEEcC-CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC-
Q 018331 45 KGSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR- 122 (358)
Q Consensus 45 ~k~~lITGa-s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~- 122 (358)
..+++|.|. +--|++.+|..|-++| +.|+++..+.++......+- ...+.....|..+..++...+.++.+.+.
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRG-FIV~v~~~~~ed~~~ve~e~---~~dI~~L~ld~~~~~~~~~~l~~f~~~L~~ 78 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRG-FIVYVTVSSAEDEKYVESED---RPDIRPLWLDDSDPSSIHASLSRFASLLSR 78 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCC-eEEEEEeCCHHHHHHHHhcc---CCCCCCcccCCCCCcchHHHHHHHHHHhcC
Confidence 357899996 7999999999999999 89999999976655444332 24588888899888888888777766443
Q ss_pred -------------CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe-cCCC
Q 018331 123 -------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG-SITG 188 (358)
Q Consensus 123 -------------~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs-S~~~ 188 (358)
.+..||..........+++..+.+.|...++.|+..++.+++.++|++..+...+.+||+++ |+..
T Consensus 79 p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~Psi~s 158 (299)
T PF08643_consen 79 PHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFNPSISS 158 (299)
T ss_pred CCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeCchhh
Confidence 35667777666556678889999999999999999999999999999998432235777665 4444
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. ..+....-.....++..|+..|.+|+ .+.+|.|..++.|.++
T Consensus 159 sl-----------------------------------~~PfhspE~~~~~al~~~~~~LrrEl-~~~~I~V~~i~LG~l~ 202 (299)
T PF08643_consen 159 SL-----------------------------------NPPFHSPESIVSSALSSFFTSLRREL-RPHNIDVTQIKLGNLD 202 (299)
T ss_pred cc-----------------------------------CCCccCHHHHHHHHHHHHHHHHHHHh-hhcCCceEEEEeeeec
Confidence 32 33456667788889999999999999 6779999999999987
Q ss_pred CC
Q 018331 269 TT 270 (358)
Q Consensus 269 t~ 270 (358)
-.
T Consensus 203 i~ 204 (299)
T PF08643_consen 203 IG 204 (299)
T ss_pred cc
Confidence 76
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-10 Score=106.43 Aligned_cols=220 Identities=12% Similarity=0.036 Sum_probs=119.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
+|||||+|.||.++++.|+++| +.|++++|+........ ...+ .|+.. .. ..+.+..+|+|
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~--------~~~~--~~~~~-~~-------~~~~~~~~D~V 61 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG-HEVTILTRSPPAGANTK--------WEGY--KPWAP-LA-------ESEALEGADAV 61 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC-CEEEEEeCCCCCCCccc--------ceee--ecccc-cc-------hhhhcCCCCEE
Confidence 5899999999999999999999 69999999865432110 0011 12221 11 11233579999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||+||...... ....+.....+++|+.++..+++++...-.+ ..++|+.|+...+ +....
T Consensus 62 vh~a~~~~~~~---~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~----~~~~i~~S~~~~y-g~~~~------------ 121 (292)
T TIGR01777 62 INLAGEPIADK---RWTEERKQEIRDSRIDTTRALVEAIAAAEQK----PKVFISASAVGYY-GTSED------------ 121 (292)
T ss_pred EECCCCCcccc---cCCHHHHHHHHhcccHHHHHHHHHHHhcCCC----ceEEEEeeeEEEe-CCCCC------------
Confidence 99999753211 2244455677889999988888887543211 0234444443322 11000
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc---
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF--- 284 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~--- 284 (358)
....+..+..+...|+..+...+...+ .+ ...++.+..++||.+.++.. .....+.....
T Consensus 122 -----------~~~~E~~~~~~~~~~~~~~~~~e~~~~----~~-~~~~~~~~ilR~~~v~G~~~-~~~~~~~~~~~~~~ 184 (292)
T TIGR01777 122 -----------RVFTEEDSPAGDDFLAELCRDWEEAAQ----AA-EDLGTRVVLLRTGIVLGPKG-GALAKMLPPFRLGL 184 (292)
T ss_pred -----------CCcCcccCCCCCChHHHHHHHHHHHhh----hc-hhcCCceEEEeeeeEECCCc-chhHHHHHHHhcCc
Confidence 011111111112223333333222222 22 33589999999999988742 11111110000
Q ss_pred -chh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 285 -PPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 285 -~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..+ .......++.++|++++++.++..+. ..|.|...++
T Consensus 185 ~~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~--~~g~~~~~~~ 225 (292)
T TIGR01777 185 GGPLGSGRQWFSWIHIEDLVQLILFALENAS--ISGPVNATAP 225 (292)
T ss_pred ccccCCCCcccccEeHHHHHHHHHHHhcCcc--cCCceEecCC
Confidence 000 00111357899999999999997653 3566554443
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.7e-10 Score=104.49 Aligned_cols=199 Identities=11% Similarity=-0.023 Sum_probs=110.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++|||||+|.||+++++.|+++| +.|++.. .|+.+.+.+...++. .++|
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~g-~~V~~~~------------------------~~~~~~~~v~~~l~~-----~~~D 59 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQG-IDFHYGS------------------------GRLENRASLEADIDA-----VKPT 59 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhCC-CEEEEec------------------------CccCCHHHHHHHHHh-----cCCC
Confidence 579999999999999999999999 5776432 234455555444442 2689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||...... . +...+.-...+++|+.++..++.++.... .+.+++||...+. .....++...
T Consensus 60 ~ViH~Aa~~~~~~-~-~~~~~~p~~~~~~Nv~gt~~ll~aa~~~g-------v~~v~~sS~~vy~-~~~~~p~~~~---- 125 (298)
T PLN02778 60 HVFNAAGVTGRPN-V-DWCESHKVETIRANVVGTLTLADVCRERG-------LVLTNYATGCIFE-YDDAHPLGSG---- 125 (298)
T ss_pred EEEECCcccCCCC-c-hhhhhCHHHHHHHHHHHHHHHHHHHHHhC-------CCEEEEecceEeC-CCCCCCcccC----
Confidence 9999999864321 1 11123345778899999999999986541 2455555543221 1000000000
Q ss_pred cccccccCCCCCCCCCCCC-CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
.+..++ .+.+....|+.||.+.+.+++.++..+ ++++ +....+.... ...+.....
T Consensus 126 -------------~~~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~~~----~lr~-----~~~~~~~~~~-~~~fi~~~~ 182 (298)
T PLN02778 126 -------------IGFKEEDTPNFTGSFYSKTKAMVEELLKNYENVC----TLRV-----RMPISSDLSN-PRNFITKIT 182 (298)
T ss_pred -------------CCCCcCCCCCCCCCchHHHHHHHHHHHHHhhccE----Eeee-----cccCCccccc-HHHHHHHHH
Confidence 001111 122334679999999888887765332 3443 2222221110 001111111
Q ss_pred chhH-HhhhcCccchhHHhhhhhhhhcC
Q 018331 285 PPFQ-KYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.... ......+.-.+|++++++.++..
T Consensus 183 ~~~~~~~~~~s~~yv~D~v~al~~~l~~ 210 (298)
T PLN02778 183 RYEKVVNIPNSMTILDELLPISIEMAKR 210 (298)
T ss_pred cCCCeeEcCCCCEEHHHHHHHHHHHHhC
Confidence 1000 00112367789999999998854
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=3e-10 Score=118.51 Aligned_cols=177 Identities=18% Similarity=0.166 Sum_probs=120.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+++||||+|+||+++++.|+++| +.|++++|+.... . ..++.++.+|+++.+++.++++ .+|+
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G-~~Vv~l~R~~~~~------~---~~~v~~v~gDL~D~~~l~~al~-------~vD~ 64 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQG-HEVVGIARHRPDS------W---PSSADFIAADIRDATAVESAMT-------GADV 64 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCchhh------c---ccCceEEEeeCCCHHHHHHHHh-------CCCE
Confidence 59999999999999999999999 6999999974221 1 1357889999999999887766 5899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+.... .+++|+.++..+++++. +.+ .+++|++||..
T Consensus 65 VVHlAa~~~~--------------~~~vNv~GT~nLLeAa~----~~g--vkr~V~iSS~~------------------- 105 (854)
T PRK05865 65 VAHCAWVRGR--------------NDHINIDGTANVLKAMA----ETG--TGRIVFTSSGH------------------- 105 (854)
T ss_pred EEECCCcccc--------------hHHHHHHHHHHHHHHHH----HcC--CCeEEEECCcH-------------------
Confidence 9999975311 36789999888776654 332 25899998721
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc--
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF-- 284 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~-- 284 (358)
|.+.+.+++ + .++.+..++|+.+.++.... +.....
T Consensus 106 ------------------------------K~aaE~ll~----~----~gl~~vILRp~~VYGP~~~~----~i~~ll~~ 143 (854)
T PRK05865 106 ------------------------------QPRVEQMLA----D----CGLEWVAVRCALIFGRNVDN----WVQRLFAL 143 (854)
T ss_pred ------------------------------HHHHHHHHH----H----cCCCEEEEEeceEeCCChHH----HHHHHhcC
Confidence 555444332 2 38999999999999875211 111111
Q ss_pred chhHH---hhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 285 PPFQK---YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 285 ~~~~~---~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
..+.. .....++.++|++++++.++..+.. .+|.|-.
T Consensus 144 ~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~-~ggvyNI 183 (854)
T PRK05865 144 PVLPAGYADRVVQVVHSDDAQRLLVRALLDTVI-DSGPVNL 183 (854)
T ss_pred ceeccCCCCceEeeeeHHHHHHHHHHHHhCCCc-CCCeEEE
Confidence 11100 0011367899999999998864321 3455443
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.20 E-value=4e-10 Score=113.96 Aligned_cols=127 Identities=19% Similarity=0.160 Sum_probs=89.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC--cEEEEEecChH---HHHHHHHHh---------cC---------CCCceEE
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFL---KAERAAKSA---------GM---------AKENYTI 99 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga--~~Vi~~~r~~~---~~~~~~~~~---------~~---------~~~~i~~ 99 (358)
++||++|||||||.||+.++..|++.+. .+|++..|..+ ..+...+++ .. ...++..
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 6899999999999999999999998652 36888888532 122221121 00 0247899
Q ss_pred EEecCCCH------HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcC
Q 018331 100 MHLDLASL------DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS 173 (358)
Q Consensus 100 ~~~Dl~~~------~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~ 173 (358)
+.+|+++. +..+.+.+ .+|+|||+|+.... .+..+..+++|+.|+..+++++...-.
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~-------~vDiVIH~AA~v~f--------~~~~~~a~~vNV~GT~nLLelA~~~~~-- 259 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAK-------EVDVIINSAANTTF--------DERYDVAIDINTRGPCHLMSFAKKCKK-- 259 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHh-------cCCEEEECcccccc--------ccCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 99999986 23333332 59999999998632 134677888999999999998865421
Q ss_pred CCCCCeEEEEecCCCC
Q 018331 174 DYPSKRLIIVGSITGN 189 (358)
Q Consensus 174 ~~~~g~iv~vsS~~~~ 189 (358)
..++|++||...+
T Consensus 260 ---lk~fV~vSTayVy 272 (605)
T PLN02503 260 ---LKLFLQVSTAYVN 272 (605)
T ss_pred ---CCeEEEccCceee
Confidence 1379999987544
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.9e-09 Score=118.11 Aligned_cols=237 Identities=16% Similarity=0.185 Sum_probs=136.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC---CcEEEEEecChHHHH---HHHHHhcC-------CCCceEEEEecCCCH---
Q 018331 44 RKGSVIITGASSGLGLATAKALAETG---KWHIIMACRDFLKAE---RAAKSAGM-------AKENYTIMHLDLASL--- 107 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~G---a~~Vi~~~r~~~~~~---~~~~~~~~-------~~~~i~~~~~Dl~~~--- 107 (358)
+.++++||||+|.||.+++.+|+++| ..+|+...|+..... ........ ...++.++.+|+++.
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35789999999999999999999887 358888888743322 22111111 123789999999754
Q ss_pred ---HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018331 108 ---DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 108 ---~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs 184 (358)
+....+. ..+|+|||||+..... .+ +......|+.|+..+++.+... + ..+++++|
T Consensus 1050 l~~~~~~~l~-------~~~d~iiH~Aa~~~~~-----~~---~~~~~~~nv~gt~~ll~~a~~~----~--~~~~v~vS 1108 (1389)
T TIGR03443 1050 LSDEKWSDLT-------NEVDVIIHNGALVHWV-----YP---YSKLRDANVIGTINVLNLCAEG----K--AKQFSFVS 1108 (1389)
T ss_pred cCHHHHHHHH-------hcCCEEEECCcEecCc-----cC---HHHHHHhHHHHHHHHHHHHHhC----C--CceEEEEe
Confidence 3333222 3699999999986421 12 3344567999999999887532 1 14899999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecC
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 264 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~P 264 (358)
|...+...... +....+.+- + ...+... ... ..........|+.||++.+.+++..+ ..|+.+..++|
T Consensus 1109 S~~v~~~~~~~--~~~~~~~~~-~-~~~~~e~--~~~-~~~~~~~~~~Y~~sK~~aE~l~~~~~-----~~g~~~~i~Rp 1176 (1389)
T TIGR03443 1109 STSALDTEYYV--NLSDELVQA-G-GAGIPES--DDL-MGSSKGLGTGYGQSKWVAEYIIREAG-----KRGLRGCIVRP 1176 (1389)
T ss_pred CeeecCccccc--chhhhhhhc-c-CCCCCcc--ccc-ccccccCCCChHHHHHHHHHHHHHHH-----hCCCCEEEECC
Confidence 98655211000 000000000 0 0000000 000 00111223569999999888776543 24899999999
Q ss_pred CcccCCcccccch--hhhhhhcch---hHHhh----hcCccchhHHhhhhhhhhcCCC
Q 018331 265 GCIATTGLFREHI--PLFRLLFPP---FQKYI----TKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 265 G~v~t~~~~~~~~--~~~~~~~~~---~~~~~----~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
|.|.++....... .+...+... ....+ ...++.+++++++++.++..+.
T Consensus 1177 g~v~G~~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~ 1234 (1389)
T TIGR03443 1177 GYVTGDSKTGATNTDDFLLRMLKGCIQLGLIPNINNTVNMVPVDHVARVVVAAALNPP 1234 (1389)
T ss_pred CccccCCCcCCCCchhHHHHHHHHHHHhCCcCCCCCccccccHHHHHHHHHHHHhCCc
Confidence 9998864322111 111111100 00001 1236789999999999986553
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.3e-09 Score=96.13 Aligned_cols=236 Identities=15% Similarity=0.176 Sum_probs=157.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++.+.++||||.|.||...+..++..= -++.+.++.=. +.+... ++ -....+-.+++.|+.+...+..++..
T Consensus 4 ~~~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l-~~-~~n~p~ykfv~~di~~~~~~~~~~~~--- 78 (331)
T KOG0747|consen 4 YKEKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNL-EP-VRNSPNYKFVEGDIADADLVLYLFET--- 78 (331)
T ss_pred CccceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchh-hh-hccCCCceEeeccccchHHHHhhhcc---
Confidence 344899999999999999999999764 13444444321 111111 11 12356789999999999887776652
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
..+|.|+|-|+..+.... -.+. -.....|++++..|+..+.....- .++|.||+...+..+...-.+
T Consensus 79 --~~id~vihfaa~t~vd~s----~~~~-~~~~~nnil~t~~Lle~~~~sg~i-----~~fvhvSTdeVYGds~~~~~~- 145 (331)
T KOG0747|consen 79 --EEIDTVIHFAAQTHVDRS----FGDS-FEFTKNNILSTHVLLEAVRVSGNI-----RRFVHVSTDEVYGDSDEDAVV- 145 (331)
T ss_pred --CchhhhhhhHhhhhhhhh----cCch-HHHhcCCchhhhhHHHHHHhccCe-----eEEEEecccceecCccccccc-
Confidence 479999999987654321 1122 334678999999999998776533 499999998766422211000
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~ 278 (358)
.+.....+...|+++|+|.+++.+++.+.+ |+.++.++-+.|.+|+..... .|
T Consensus 146 ----------------------~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy----~lpvv~~R~nnVYGP~q~~~klip 199 (331)
T KOG0747|consen 146 ----------------------GEASLLNPTNPYAASKAAAEMLVRSYGRSY----GLPVVTTRMNNVYGPNQYPEKLIP 199 (331)
T ss_pred ----------------------cccccCCCCCchHHHHHHHHHHHHHHhhcc----CCcEEEEeccCccCCCcChHHHhH
Confidence 022233556789999999999999998887 999999999999999776532 23
Q ss_pred hhhhhcchhH-------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 LFRLLFPPFQ-------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~~~~~~~~~~-------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.+..+..... ....+..+-++|+++++-.++.. ..-|+.+....
T Consensus 200 kFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K---g~~geIYNIgt 250 (331)
T KOG0747|consen 200 KFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK---GELGEIYNIGT 250 (331)
T ss_pred HHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc---CCccceeeccC
Confidence 2222111111 11122367899999999988876 23577777654
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-09 Score=99.40 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=60.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC-cc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP-LD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~-iD 125 (358)
++|||||||.||++++++|+++| +.|.+..|+.+... ...+..+.+|+.|.+++..+++.. +.... +|
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g-~~V~~~~R~~~~~~---------~~~~~~~~~d~~d~~~l~~a~~~~-~~~~g~~d 69 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSA---------GPNEKHVKFDWLDEDTWDNPFSSD-DGMEPEIS 69 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCC-CcEEEEeCCCcccc---------CCCCccccccCCCHHHHHHHHhcc-cCcCCcee
Confidence 38999999999999999999999 69999999875431 135667789999999998887643 22345 99
Q ss_pred EEEEcccc
Q 018331 126 VLVCNAAV 133 (358)
Q Consensus 126 ~lv~~ag~ 133 (358)
.++++++.
T Consensus 70 ~v~~~~~~ 77 (285)
T TIGR03649 70 AVYLVAPP 77 (285)
T ss_pred EEEEeCCC
Confidence 99998764
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6e-10 Score=99.89 Aligned_cols=187 Identities=14% Similarity=0.117 Sum_probs=133.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH-H--Hhc-CCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA-K--SAG-MAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~-~--~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+|++||||-||--|..+|+.|+++| +.|+.+.|..+...... . +.. ..+.+++.+.+|++|...+.++++.+
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekG-Y~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v--- 77 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKG-YEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEV--- 77 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcC-cEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhc---
Confidence 6899999999999999999999999 79999988743222111 1 111 12446899999999999999999877
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+|-|.|-++...-+ .+.+.-+.+.+++..|++.+..++--.-.+ ..|+..-||.--+. -
T Consensus 78 --~PdEIYNLaAQS~V~-----vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~----~~rfYQAStSE~fG-~-------- 137 (345)
T COG1089 78 --QPDEIYNLAAQSHVG-----VSFEQPEYTADVDAIGTLRLLEAIRILGEK----KTRFYQASTSELYG-L-------- 137 (345)
T ss_pred --Cchhheecccccccc-----ccccCcceeeeechhHHHHHHHHHHHhCCc----ccEEEecccHHhhc-C--------
Confidence 689999998876443 244555778889999999998887554421 25777766654221 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc--ccCCcEEEEecCCcccCCcc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~--~~~gI~v~~v~PG~v~t~~~ 272 (358)
-...+-+++.|+.+.+.|+++|..-..++......++ +-.||-+|.=.| .++..+
T Consensus 138 ---------------v~~~pq~E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP--~Rge~F 194 (345)
T COG1089 138 ---------------VQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESP--LRGETF 194 (345)
T ss_pred ---------------cccCccccCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCC--CCccce
Confidence 0123345667888999999999998888887766653 445788885444 555433
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-09 Score=99.77 Aligned_cols=207 Identities=18% Similarity=0.213 Sum_probs=118.9
Q ss_pred CCCCeEEEE----cCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH-------HHhcCCCCceEEEEecCCCHHHHH
Q 018331 43 LRKGSVIIT----GASSGLGLATAKALAETGKWHIIMACRDFLKAERAA-------KSAGMAKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 43 l~~k~~lIT----Gas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~-------~~~~~~~~~i~~~~~Dl~~~~~i~ 111 (358)
...+++||| ||+|.||.+++++|+++| +.|+++.|+........ .++. ...+.++.+|+.+ +.
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~~l~--~~~v~~v~~D~~d---~~ 123 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAG-HEVTLFTRGKEPSQKMKKEPFSRFSELS--SAGVKTVWGDPAD---VK 123 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCC-CEEEEEecCCcchhhhccCchhhhhHhh--hcCceEEEecHHH---HH
Confidence 445789999 999999999999999999 69999999864422111 1111 1247888999876 22
Q ss_pred HHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 191 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~ 191 (358)
+++. ...+|+||++++.. . .+ ++.++...++.+ -.++|++||...+.
T Consensus 124 ~~~~-----~~~~d~Vi~~~~~~----------~-----------~~----~~~ll~aa~~~g--vkr~V~~SS~~vyg- 170 (378)
T PLN00016 124 SKVA-----GAGFDVVYDNNGKD----------L-----------DE----VEPVADWAKSPG--LKQFLFCSSAGVYK- 170 (378)
T ss_pred hhhc-----cCCccEEEeCCCCC----------H-----------HH----HHHHHHHHHHcC--CCEEEEEccHhhcC-
Confidence 3321 23699999986521 1 11 222333444433 25899999976542
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
... ..| ..+..+... +. +|...+.+.+ + .++.+..++|+.+.++.
T Consensus 171 ~~~-~~p----------------------~~E~~~~~p---~~-sK~~~E~~l~----~----~~l~~~ilRp~~vyG~~ 215 (378)
T PLN00016 171 KSD-EPP----------------------HVEGDAVKP---KA-GHLEVEAYLQ----K----LGVNWTSFRPQYIYGPG 215 (378)
T ss_pred CCC-CCC----------------------CCCCCcCCC---cc-hHHHHHHHHH----H----cCCCeEEEeceeEECCC
Confidence 100 000 001111111 11 6877665432 2 37899999999999875
Q ss_pred ccccchh-hhhhhcc--hhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 272 LFREHIP-LFRLLFP--PFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 272 ~~~~~~~-~~~~~~~--~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
....... +...... ... ......++.++|+|++++.++..+.. .|..+...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~--~~~~yni~~ 274 (378)
T PLN00016 216 NNKDCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKA--AGQIFNIVS 274 (378)
T ss_pred CCCchHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccc--cCCEEEecC
Confidence 4322111 1111111 000 00112357899999999999976532 345554443
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-08 Score=105.25 Aligned_cols=160 Identities=10% Similarity=-0.011 Sum_probs=100.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
..+++|||||+|.||+++++.|.++| +.|.. ...|+++.+.+..++... +
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g-~~v~~------------------------~~~~l~d~~~v~~~i~~~-----~ 428 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQG-IAYEY------------------------GKGRLEDRSSLLADIRNV-----K 428 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCC-CeEEe------------------------eccccccHHHHHHHHHhh-----C
Confidence 34579999999999999999999999 46621 113577777777766643 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+...... . +...+.-+..+++|+.++..+++++... + .++|++||...+. .....++..
T Consensus 429 pd~Vih~Aa~~~~~~-~-~~~~~~~~~~~~~N~~gt~~l~~a~~~~----g---~~~v~~Ss~~v~~-~~~~~~~~~--- 495 (668)
T PLN02260 429 PTHVFNAAGVTGRPN-V-DWCESHKVETIRANVVGTLTLADVCREN----G---LLMMNFATGCIFE-YDAKHPEGS--- 495 (668)
T ss_pred CCEEEECCcccCCCC-C-ChHHhCHHHHHHHHhHHHHHHHHHHHHc----C---CeEEEEcccceec-CCccccccc---
Confidence 899999999864321 1 1123345678899999999999998653 1 3566666643221 000000000
Q ss_pred cccccccccCCCCCCCCCCCC-CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecC
Q 018331 204 GDLRGFAGGLNGLNSSSMIDG-GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 264 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~P 264 (358)
..+..+. .+.+....|+.||.+.+.+++.+... ..+++..+..
T Consensus 496 --------------~~p~~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~~----~~~r~~~~~~ 539 (668)
T PLN02260 496 --------------GIGFKEEDKPNFTGSFYSKTKAMVEELLREYDNV----CTLRVRMPIS 539 (668)
T ss_pred --------------CCCCCcCCCCCCCCChhhHHHHHHHHHHHhhhhh----eEEEEEEecc
Confidence 0011111 12233468999999988888776432 3566665553
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-08 Score=104.39 Aligned_cols=186 Identities=12% Similarity=0.080 Sum_probs=116.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|.||++++++|+++| +.|++++|+.... ...++.++++|+++.. +.+++. .+|+
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G-~~Vi~ldr~~~~~---------~~~~ve~v~~Dl~d~~-l~~al~-------~~D~ 63 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAG-HTVSGIAQHPHDA---------LDPRVDYVCASLRNPV-LQELAG-------EADA 63 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCChhhc---------ccCCceEEEccCCCHH-HHHHhc-------CCCE
Confidence 59999999999999999999999 6999999864321 1236789999999873 333322 6899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+.... .. ..+|+.++.++++++.. .+ .++|++||..+..
T Consensus 64 VIHLAa~~~~-------~~------~~vNv~Gt~nLleAA~~----~G---vRiV~~SS~~G~~---------------- 107 (699)
T PRK12320 64 VIHLAPVDTS-------AP------GGVGITGLAHVANAAAR----AG---ARLLFVSQAAGRP---------------- 107 (699)
T ss_pred EEEcCccCcc-------ch------hhHHHHHHHHHHHHHHH----cC---CeEEEEECCCCCC----------------
Confidence 9999986411 11 24789999998888743 22 4899999864320
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
. .|. . ...+... .++.+..+.|+.+.++............+...
T Consensus 108 --------------------~----~~~----~----aE~ll~~----~~~p~~ILR~~nVYGp~~~~~~~r~I~~~l~~ 151 (699)
T PRK12320 108 --------------------E----LYR----Q----AETLVST----GWAPSLVIRIAPPVGRQLDWMVCRTVATLLRS 151 (699)
T ss_pred --------------------c----ccc----H----HHHHHHh----cCCCEEEEeCceecCCCCcccHhHHHHHHHHH
Confidence 0 111 1 1222222 35788999999998874432111111111110
Q ss_pred hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 287 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+-.+|++++++.+++.. .+| .++..++
T Consensus 152 ~~~~~pI~vIyVdDvv~alv~al~~~---~~G-iyNIG~~ 187 (699)
T PRK12320 152 KVSARPIRVLHLDDLVRFLVLALNTD---RNG-VVDLATP 187 (699)
T ss_pred HHcCCceEEEEHHHHHHHHHHHHhCC---CCC-EEEEeCC
Confidence 00000011358899999999988653 245 5555554
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.7e-08 Score=84.96 Aligned_cols=85 Identities=20% Similarity=0.297 Sum_probs=71.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+++||||| |+|.++++.|+++| +.|++.+|+.+..+.....+.. ..++.++++|++|.+++.++++.+.+.++++|+
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G-~~V~v~~R~~~~~~~l~~~l~~-~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~ 78 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKG-FHVSVIARREVKLENVKRESTT-PESITPLPLDYHDDDALKLAIKSTIEKNGPFDL 78 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCc-CEEEEEECCHHHHHHHHHHhhc-CCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeE
Confidence 69999998 67778999999999 5999999998776666554542 457889999999999999999999888889999
Q ss_pred EEEccccc
Q 018331 127 LVCNAAVY 134 (358)
Q Consensus 127 lv~~ag~~ 134 (358)
+|+..-..
T Consensus 79 lv~~vh~~ 86 (177)
T PRK08309 79 AVAWIHSS 86 (177)
T ss_pred EEEecccc
Confidence 99776553
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=96.53 Aligned_cols=212 Identities=14% Similarity=0.188 Sum_probs=120.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
++||||||-||++++..|.+.| +.|+++.|+..+.+.. +.+. +...+.+. ...+ ..+|+|
T Consensus 1 IliTGgTGlIG~~L~~~L~~~g-h~v~iltR~~~~~~~~----------~~~~---v~~~~~~~----~~~~--~~~Dav 60 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGG-HQVTILTRRPPKASQN----------LHPN---VTLWEGLA----DALT--LGIDAV 60 (297)
T ss_pred CeEeccccchhHHHHHHHHhCC-CeEEEEEcCCcchhhh----------cCcc---ccccchhh----hccc--CCCCEE
Confidence 5899999999999999999999 6999999987554322 1111 11122211 1111 169999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
||-||..-..++ .+.+.=+.+ +.+.+..++.+.....+... ++++..-+|..|+++.-.
T Consensus 61 INLAG~~I~~rr---Wt~~~K~~i----~~SRi~~T~~L~e~I~~~~~-~P~~~isaSAvGyYG~~~------------- 119 (297)
T COG1090 61 INLAGEPIAERR---WTEKQKEEI----RQSRINTTEKLVELIAASET-KPKVLISASAVGYYGHSG------------- 119 (297)
T ss_pred EECCCCcccccc---CCHHHHHHH----HHHHhHHHHHHHHHHHhccC-CCcEEEecceEEEecCCC-------------
Confidence 999997643322 344433333 44788888888888775443 345555566667653311
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc--ccCCcEEEEecCCcccCCcc--cccchhhhhhh
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYPGCIATTGL--FREHIPLFRLL 283 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~--~~~gI~v~~v~PG~v~t~~~--~~~~~~~~~~~ 283 (358)
...+.+..+.. .. .+..+++.+-.+.. ...|+||+.++-|.|.++.- ...+.+.++..
T Consensus 120 ----------~~~~tE~~~~g--~~------Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GGaL~~m~~~fk~g 181 (297)
T COG1090 120 ----------DRVVTEESPPG--DD------FLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGGALGKMLPLFKLG 181 (297)
T ss_pred ----------ceeeecCCCCC--CC------hHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCcchhhhcchhhhc
Confidence 11111221111 01 12333343322210 34699999999999988521 11222222222
Q ss_pred cc-hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCcee
Q 018331 284 FP-PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY 320 (358)
Q Consensus 284 ~~-~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~ 320 (358)
.. .+ .-.-.......+|.++.|.|++++... +|-|
T Consensus 182 lGG~~GsGrQ~~SWIhieD~v~~I~fll~~~~l--sGp~ 218 (297)
T COG1090 182 LGGKLGSGRQWFSWIHIEDLVNAILFLLENEQL--SGPF 218 (297)
T ss_pred cCCccCCCCceeeeeeHHHHHHHHHHHHhCcCC--CCcc
Confidence 10 00 000011257899999999999998754 6654
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-09 Score=95.74 Aligned_cols=102 Identities=16% Similarity=0.175 Sum_probs=75.9
Q ss_pred CeEEEEcC-CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGa-s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+=.||.. |||||+++|+.|+++|+ .|+++++.. . +... ....+|+++.+++.++++.+.+.++++
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga-~Vvlv~~~~-~-------l~~~----~~~~~Dv~d~~s~~~l~~~v~~~~g~i 81 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGH-EVTLVTTKR-A-------LKPE----PHPNLSIREIETTKDLLITLKELVQEH 81 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCC-EEEEEcChh-h-------cccc----cCCcceeecHHHHHHHHHHHHHHcCCC
Confidence 35566666 67999999999999995 888887631 1 1100 124589999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
|+||||||+... .++.+.+.+.|++++. .+.+.+.+
T Consensus 82 DiLVnnAgv~d~-~~~~~~s~e~~~~~~~---~~~~~~~~ 117 (227)
T TIGR02114 82 DILIHSMAVSDY-TPVYMTDLEQVQASDN---LNEFLSKQ 117 (227)
T ss_pred CEEEECCEeccc-cchhhCCHHHHhhhcc---hhhhhccc
Confidence 999999998643 3566788889987744 34444443
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.1e-08 Score=95.53 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=107.3
Q ss_pred EEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEE
Q 018331 50 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVC 129 (358)
Q Consensus 50 ITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~ 129 (358)
|+||++|+|.++++.|...|+ .|+.+.+...+. ......+++.+|+
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~---------------------------------~~~~~~~~~~~~~ 88 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGY-DVVANNDGGLTW---------------------------------AAGWGDRFGALVF 88 (450)
T ss_pred EEccCchhHHHHHHHHhhCCC-eeeecCcccccc---------------------------------ccCcCCcccEEEE
Confidence 778889999999999999996 888876654210 0000114454443
Q ss_pred cccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccc
Q 018331 130 NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGF 209 (358)
Q Consensus 130 ~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~ 209 (358)
-+.... +.++ +.+.+.+++..++.|.. .|+||+++|..+..
T Consensus 89 d~~~~~--------~~~~--------l~~~~~~~~~~l~~l~~----~griv~i~s~~~~~------------------- 129 (450)
T PRK08261 89 DATGIT--------DPAD--------LKALYEFFHPVLRSLAP----CGRVVVLGRPPEAA------------------- 129 (450)
T ss_pred ECCCCC--------CHHH--------HHHHHHHHHHHHHhccC----CCEEEEEccccccC-------------------
Confidence 222110 1222 22444667777887764 37999999876541
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHH
Q 018331 210 AGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQK 289 (358)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~ 289 (358)
....|+.+|+++..+++++++|+ ..+|+++.|.|+.
T Consensus 130 -------------------~~~~~~~akaal~gl~rsla~E~--~~gi~v~~i~~~~----------------------- 165 (450)
T PRK08261 130 -------------------ADPAAAAAQRALEGFTRSLGKEL--RRGATAQLVYVAP----------------------- 165 (450)
T ss_pred -------------------CchHHHHHHHHHHHHHHHHHHHh--hcCCEEEEEecCC-----------------------
Confidence 23359999999999999999998 4699999998875
Q ss_pred hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 290 YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 290 ~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..+++++..+.|+++.....++|+.+..++..
T Consensus 166 ------~~~~~~~~~~~~l~s~~~a~~~g~~i~~~~~~ 197 (450)
T PRK08261 166 ------GAEAGLESTLRFFLSPRSAYVSGQVVRVGAAD 197 (450)
T ss_pred ------CCHHHHHHHHHHhcCCccCCccCcEEEecCCc
Confidence 14677788888888877777888888766643
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.1e-07 Score=85.71 Aligned_cols=202 Identities=15% Similarity=0.198 Sum_probs=119.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
|+|+||+|.+|+.+++.|++.| +.|.++.|+.++.. .+.++. ..++++.+|+.+.+++.++++ ++|.|
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~-~~V~~l~R~~~~~~--~~~l~~--~g~~vv~~d~~~~~~l~~al~-------g~d~v 68 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAG-FSVRALVRDPSSDR--AQQLQA--LGAEVVEADYDDPESLVAALK-------GVDAV 68 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-GCEEEEESSSHHHH--HHHHHH--TTTEEEES-TT-HHHHHHHHT-------TCSEE
T ss_pred CEEECCccHHHHHHHHHHHhCC-CCcEEEEeccchhh--hhhhhc--ccceEeecccCCHHHHHHHHc-------CCceE
Confidence 6899999999999999999988 69999999863321 222222 234678999999999888877 89999
Q ss_pred EEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccc
Q 018331 128 VCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLR 207 (358)
Q Consensus 128 v~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~ 207 (358)
|++.+.... . -......+++++..... .++| .||.......
T Consensus 69 ~~~~~~~~~-------~----------~~~~~~~li~Aa~~agV------k~~v-~ss~~~~~~~--------------- 109 (233)
T PF05368_consen 69 FSVTPPSHP-------S----------ELEQQKNLIDAAKAAGV------KHFV-PSSFGADYDE--------------- 109 (233)
T ss_dssp EEESSCSCC-------C----------HHHHHHHHHHHHHHHT-------SEEE-ESEESSGTTT---------------
T ss_pred EeecCcchh-------h----------hhhhhhhHHHhhhcccc------ceEE-EEEecccccc---------------
Confidence 999887631 1 11233345666655543 2676 4555433100
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc--
Q 018331 208 GFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP-- 285 (358)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~-- 285 (358)
.....+....| ..|+.++.+.+ + .++....|+||+.... +.....+.......
T Consensus 110 ---------------~~~~~p~~~~~-~~k~~ie~~l~----~----~~i~~t~i~~g~f~e~-~~~~~~~~~~~~~~~~ 164 (233)
T PF05368_consen 110 ---------------SSGSEPEIPHF-DQKAEIEEYLR----E----SGIPYTIIRPGFFMEN-LLPPFAPVVDIKKSKD 164 (233)
T ss_dssp ---------------TTTSTTHHHHH-HHHHHHHHHHH----H----CTSEBEEEEE-EEHHH-HHTTTHHTTCSCCTSS
T ss_pred ---------------cccccccchhh-hhhhhhhhhhh----h----ccccceeccccchhhh-hhhhhcccccccccce
Confidence 00112223333 46666443333 2 2889999999987543 32212110000000
Q ss_pred --hhHHhh--hcCc-cchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 286 --PFQKYI--TKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 286 --~~~~~~--~~~~-~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.+.... .... .+.+|+++.++.++.++....+|.++...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~ 209 (233)
T PF05368_consen 165 VVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAG 209 (233)
T ss_dssp EEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGG
T ss_pred EEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCC
Confidence 000000 1123 489999999999999987765788877654
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=91.51 Aligned_cols=243 Identities=16% Similarity=0.132 Sum_probs=152.2
Q ss_pred ccCCCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHH-HHHHHh----cCCCCceEEEEecCCCHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSA----GMAKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 41 ~~l~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-~~~~~~----~~~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
-...++++|||||+ +.||.+++..|+.-|| +||++..+.++.. +..+.+ ...+..+-++.+++.+..+++.++
T Consensus 392 ~~y~d~valVTGA~~gSIaa~Vv~~LL~gGA-tVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlI 470 (866)
T COG4982 392 GTYGDKVALVTGASKGSIAAAVVARLLAGGA-TVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALI 470 (866)
T ss_pred CCcccceEEEecCCCcchHHHHHHHHHhCCc-EEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHH
Confidence 35789999999999 7899999999999998 8888877654332 222222 345667888889999999999999
Q ss_pred HHHHhcCC--------------CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCe
Q 018331 115 DTFRRSGR--------------PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKR 179 (358)
Q Consensus 115 ~~~~~~~~--------------~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~ 179 (358)
+.+-++.. .+|.+|=-|.+...+ .+.+..+ .-+..+++-+.+...++-.+.+.--.++- .+-.
T Consensus 471 ewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G-~l~~ags-raE~~~rilLw~V~Rliggl~~~~s~r~v~~R~h 548 (866)
T COG4982 471 EWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSG-ELADAGS-RAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLH 548 (866)
T ss_pred HHhccccccccCCcceecccccCcceeeecccCCccC-ccccCCc-hHHHHHHHHHHHHHHHHHHhhhhccccCcccceE
Confidence 99965321 257777777665443 3333222 12223333344444444433332222211 1134
Q ss_pred EEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEE
Q 018331 180 LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF 259 (358)
Q Consensus 180 iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v 259 (358)
+|.-.|... ..|.+-..|+-+|++++.+..-+..|-.=..-+.+
T Consensus 549 VVLPgSPNr------------------------------------G~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl 592 (866)
T COG4982 549 VVLPGSPNR------------------------------------GMFGGDGAYGESKLALDAVVNRWHSESSWAARVSL 592 (866)
T ss_pred EEecCCCCC------------------------------------CccCCCcchhhHHHHHHHHHHHhhccchhhHHHHH
Confidence 555555432 24567778999999999988877665310113566
Q ss_pred EEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC---CCceeeecCCCC
Q 018331 260 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT---KSGVYWSWNKDS 327 (358)
Q Consensus 260 ~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~---~~G~~~~~d~~~ 327 (358)
..-+.||++++++......+..-..+. .-+..+.+|.+.-++.|++.+... .+=.+.+..|+.
T Consensus 593 ~~A~IGWtrGTGLMg~Ndiiv~aiEk~-----GV~tyS~~EmA~~LLgL~saev~e~a~~~PI~aDLtGGL 658 (866)
T COG4982 593 AHALIGWTRGTGLMGHNDIIVAAIEKA-----GVRTYSTDEMAFNLLGLASAEVVELAASSPITADLTGGL 658 (866)
T ss_pred hhhheeeeccccccCCcchhHHHHHHh-----CceecCHHHHHHHHHhhccHHHHHHHhcCCeEeeccCcc
Confidence 667899999998866553332222211 124568999999999998865543 233445555543
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=5.5e-08 Score=87.38 Aligned_cols=225 Identities=12% Similarity=0.105 Sum_probs=137.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.+++++|+||||.|.||.+++..|..+| +.||+++--...-....+.+- ...+...+.-|+..+ ++.
T Consensus 23 ~p~~~lrI~itGgaGFIgSHLvdkLm~eg-h~VIa~Dn~ftg~k~n~~~~~-~~~~fel~~hdv~~p-----l~~----- 90 (350)
T KOG1429|consen 23 KPSQNLRILITGGAGFIGSHLVDKLMTEG-HEVIALDNYFTGRKENLEHWI-GHPNFELIRHDVVEP-----LLK----- 90 (350)
T ss_pred cCCCCcEEEEecCcchHHHHHHHHHHhcC-CeEEEEecccccchhhcchhc-cCcceeEEEeechhH-----HHH-----
Confidence 56778999999999999999999999999 699998865433222211111 012334444444433 443
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+|.++|-|....+.... ..--+++..|+.++++++..+.+.. .|++..|+..-+. .+..-+-..
T Consensus 91 --evD~IyhLAapasp~~y~-----~npvktIktN~igtln~lglakrv~-------aR~l~aSTseVYg-dp~~hpq~e 155 (350)
T KOG1429|consen 91 --EVDQIYHLAAPASPPHYK-----YNPVKTIKTNVIGTLNMLGLAKRVG-------ARFLLASTSEVYG-DPLVHPQVE 155 (350)
T ss_pred --HhhhhhhhccCCCCcccc-----cCccceeeecchhhHHHHHHHHHhC-------ceEEEeecccccC-CcccCCCcc
Confidence 478899998877554321 1224567889999999988886553 4888877765542 211111111
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
. ++..+ .+....+.|...|.+.+-++....++ .||.|-..++--+.+|.+.=+-....
T Consensus 156 ~---------------ywg~v---npigpr~cydegKr~aE~L~~~y~k~----~giE~rIaRifNtyGPrm~~~dgrvv 213 (350)
T KOG1429|consen 156 T---------------YWGNV---NPIGPRSCYDEGKRVAETLCYAYHKQ----EGIEVRIARIFNTYGPRMHMDDGRVV 213 (350)
T ss_pred c---------------ccccc---CcCCchhhhhHHHHHHHHHHHHhhcc----cCcEEEEEeeecccCCccccCCChhh
Confidence 1 11111 35567889999999977777777665 48888888887776765422111100
Q ss_pred hhh-c-----chhH----HhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 281 RLL-F-----PPFQ----KYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 281 ~~~-~-----~~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
..+ . .++. ....+.+.=..|+++.++.|+..+..
T Consensus 214 snf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~ 257 (350)
T KOG1429|consen 214 SNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYR 257 (350)
T ss_pred HHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCc
Confidence 000 0 0000 01112255688999999999876643
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.1e-08 Score=100.46 Aligned_cols=207 Identities=14% Similarity=0.174 Sum_probs=152.3
Q ss_pred hhhhcccceeeccccccCCCCcCCCCccCc--c------cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH
Q 018331 11 REFSQRNGVVRAQTMATASPAVDVSSPQGK--K------TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 82 (358)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~ 82 (358)
+||++.+|+++.....+.........|+.. . =-..|.++|+||-||.|.+++++|..+|+..++++.|+-=+
T Consensus 1726 RfMasGKHIGKVvikvr~eE~~k~~~pk~r~i~AI~rt~~hpeksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGir 1805 (2376)
T KOG1202|consen 1726 RFMASGKHIGKVVIKVRAEEPAKAKGPKPRLISAIPRTYCHPEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIR 1805 (2376)
T ss_pred HHHhccCccceEEEEEcccccccccCCchhhHhhcchhhcCccceEEEeccccchhHHHHHHHHhcCceEEEEeccccch
Confidence 689999999998877775433322222110 0 02367999999999999999999999999889999998422
Q ss_pred ---HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHH
Q 018331 83 ---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159 (358)
Q Consensus 83 ---~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~ 159 (358)
.....+.+.+.+-++.+--.|++..+..+.++++..+ ++.+-.++|-|...... .+++.+++.|+..-...+.++
T Consensus 1806 tGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~k-l~~vGGiFnLA~VLRD~-LiEnQt~knFk~va~pK~~~T 1883 (2376)
T KOG1202|consen 1806 TGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNK-LGPVGGIFNLAAVLRDG-LIENQTPKNFKDVAKPKYSGT 1883 (2376)
T ss_pred hhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhh-cccccchhhHHHHHHhh-hhcccChhHHHhhhccceeee
Confidence 2344556666666677667788888888888887654 56889999999887653 677889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHH
Q 018331 160 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVC 239 (358)
Q Consensus 160 ~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a 239 (358)
.++-+.-...-.+-. -+|.+||+++-. +..++..||.+..+
T Consensus 1884 i~LD~~sRe~C~~Ld----yFv~FSSvscGR-----------------------------------GN~GQtNYG~aNS~ 1924 (2376)
T KOG1202|consen 1884 INLDRVSREICPELD----YFVVFSSVSCGR-----------------------------------GNAGQTNYGLANSA 1924 (2376)
T ss_pred eehhhhhhhhCcccc----eEEEEEeecccC-----------------------------------CCCcccccchhhHH
Confidence 998877766544433 566667766543 55688999999999
Q ss_pred HHHHHHHHHHhhcccCCcEEE
Q 018331 240 NMLTMQEFHRRFHEETGIAFA 260 (358)
Q Consensus 240 l~~~~~~la~e~~~~~gI~v~ 260 (358)
++.++..=..+ .=+|+.|.
T Consensus 1925 MERiceqRr~~--GfPG~AiQ 1943 (2376)
T KOG1202|consen 1925 MERICEQRRHE--GFPGTAIQ 1943 (2376)
T ss_pred HHHHHHHhhhc--CCCcceee
Confidence 99988754433 33555554
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.7e-07 Score=82.17 Aligned_cols=218 Identities=20% Similarity=0.188 Sum_probs=143.7
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+.-..+|-++-|.||||.+|+-++.+|++.| ..||+=.|-++..-...+-+. .=+++.++..|+.|+++|+++++
T Consensus 54 GGRsS~sGiVaTVFGAtGFlGryvvnklak~G-SQviiPyR~d~~~~r~lkvmG-dLGQvl~~~fd~~DedSIr~vvk-- 129 (391)
T KOG2865|consen 54 GGRSSVSGIVATVFGATGFLGRYVVNKLAKMG-SQVIIPYRGDEYDPRHLKVMG-DLGQVLFMKFDLRDEDSIRAVVK-- 129 (391)
T ss_pred CCcccccceEEEEecccccccHHHHHHHhhcC-CeEEEeccCCccchhheeecc-cccceeeeccCCCCHHHHHHHHH--
Confidence 34455788899999999999999999999999 588887775433222222222 12578999999999999999988
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.-++|||-.|.-.+...+ + .-++|+.++-.+.+.+-....+ |+|.+|+..+..
T Consensus 130 -----~sNVVINLIGrd~eTknf---~------f~Dvn~~~aerlAricke~GVe------rfIhvS~Lganv------- 182 (391)
T KOG2865|consen 130 -----HSNVVINLIGRDYETKNF---S------FEDVNVHIAERLARICKEAGVE------RFIHVSCLGANV------- 182 (391)
T ss_pred -----hCcEEEEeeccccccCCc---c------cccccchHHHHHHHHHHhhChh------heeehhhccccc-------
Confidence 568999999976443322 2 2347888888888888666554 899999987543
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc--cccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG--LFRE 275 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~--~~~~ 275 (358)
.+.+.|=.||++-+.-++. ++ -....|.|..|.++. +.+.
T Consensus 183 ------------------------------~s~Sr~LrsK~~gE~aVrd---af-----PeAtIirPa~iyG~eDrfln~ 224 (391)
T KOG2865|consen 183 ------------------------------KSPSRMLRSKAAGEEAVRD---AF-----PEATIIRPADIYGTEDRFLNY 224 (391)
T ss_pred ------------------------------cChHHHHHhhhhhHHHHHh---hC-----CcceeechhhhcccchhHHHH
Confidence 3456678888884444332 22 245567888776641 1111
Q ss_pred chhhhhhhcchhHHh-----hhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKY-----ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+..+-+. +..+... ..+..+=+.|+|.+|+.++.++.. .|.-+..-|+.
T Consensus 225 ya~~~rk-~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s--~Gktye~vGP~ 278 (391)
T KOG2865|consen 225 YASFWRK-FGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDS--MGKTYEFVGPD 278 (391)
T ss_pred HHHHHHh-cCceeeecCCcceeeccEEEehHHHHHHHhccCccc--cCceeeecCCc
Confidence 1111111 1111000 111234568999999999999855 77777766643
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.1e-07 Score=85.93 Aligned_cols=218 Identities=13% Similarity=0.100 Sum_probs=124.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
...+-.+++|+||+|++|+-+++.|.++| +.|.++.|+..+.+.... +.........+..|.....++-...-+. .
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~a~~~~~-~~~~d~~~~~v~~~~~~~~d~~~~~~~~--~ 150 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQKAEDLLG-VFFVDLGLQNVEADVVTAIDILKKLVEA--V 150 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCC-CeeeeeccChhhhhhhhc-ccccccccceeeeccccccchhhhhhhh--c
Confidence 34667799999999999999999999999 799999999877766654 1111234445555555443322221111 1
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.....+++.|+|...... ++.--..|.+.|..+++.++.....+ ++|+++|+.+.--
T Consensus 151 ~~~~~~v~~~~ggrp~~e--------d~~~p~~VD~~g~knlvdA~~~aGvk------~~vlv~si~~~~~--------- 207 (411)
T KOG1203|consen 151 PKGVVIVIKGAGGRPEEE--------DIVTPEKVDYEGTKNLVDACKKAGVK------RVVLVGSIGGTKF--------- 207 (411)
T ss_pred cccceeEEecccCCCCcc--------cCCCcceecHHHHHHHHHHHHHhCCc------eEEEEEeecCccc---------
Confidence 113557777777653321 22223456778888889888655554 8999999887630
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
..+.+..+. ..+..-.+-.+.++.++.|+.-..|.||....+..........
T Consensus 208 -------------------------~~~~~~~~~---~~~~~~~k~~~e~~~~~Sgl~ytiIR~g~~~~~~~~~~~~~~~ 259 (411)
T KOG1203|consen 208 -------------------------NQPPNILLL---NGLVLKAKLKAEKFLQDSGLPYTIIRPGGLEQDTGGQREVVVD 259 (411)
T ss_pred -------------------------CCCchhhhh---hhhhhHHHHhHHHHHHhcCCCcEEEeccccccCCCCcceeccc
Confidence 111222221 1111111122222225679999999999987743222111110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.. ...+........++-.++|+.++.++..++.
T Consensus 260 ~~-~~~~~~~~~~~~i~r~~vael~~~all~~~~ 292 (411)
T KOG1203|consen 260 DE-KELLTVDGGAYSISRLDVAELVAKALLNEAA 292 (411)
T ss_pred Cc-cccccccccceeeehhhHHHHHHHHHhhhhh
Confidence 00 0011000001256778888888888877655
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-08 Score=93.48 Aligned_cols=245 Identities=17% Similarity=0.140 Sum_probs=139.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCC--CcEEEEEecChHH--H-H--------HHHHHhcCC----CCceEEEEecC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETG--KWHIIMACRDFLK--A-E--------RAAKSAGMA----KENYTIMHLDL 104 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~G--a~~Vi~~~r~~~~--~-~--------~~~~~~~~~----~~~i~~~~~Dl 104 (358)
-+++|+++||||||++|+-++..|+..- ..++++.-|.... . + .+.+.+.+. -.++..+.+|+
T Consensus 9 f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi 88 (467)
T KOG1221|consen 9 FYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDI 88 (467)
T ss_pred HhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceeccccc
Confidence 4789999999999999999999999754 4578888775311 1 1 222222222 34688888998
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs 184 (358)
++++---..-+.. .....+|+|||+|+.... .|.++..+.+|+.|+..+.+.+....+- ..+|.||
T Consensus 89 ~~~~LGis~~D~~-~l~~eV~ivih~AAtvrF--------de~l~~al~iNt~Gt~~~l~lak~~~~l-----~~~vhVS 154 (467)
T KOG1221|consen 89 SEPDLGISESDLR-TLADEVNIVIHSAATVRF--------DEPLDVALGINTRGTRNVLQLAKEMVKL-----KALVHVS 154 (467)
T ss_pred cCcccCCChHHHH-HHHhcCCEEEEeeeeecc--------chhhhhhhhhhhHhHHHHHHHHHHhhhh-----heEEEee
Confidence 7653221111111 112379999999998733 3556778999999999999998876654 3788888
Q ss_pred cCCCCCCC--cCCCC---CCCCCccccccccccCCCCCC--CCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc
Q 018331 185 SITGNTNT--LAGNV---PPKANLGDLRGFAGGLNGLNS--SSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI 257 (358)
Q Consensus 185 S~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI 257 (358)
+....-.. ....+ +...+.+.+........+... ....-.++++ ..|.-+|+.-+++...-+ .++
T Consensus 155 TAy~n~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~P--NTYtfTKal~E~~i~~~~------~~l 226 (467)
T KOG1221|consen 155 TAYSNCNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWP--NTYTFTKALAEMVIQKEA------ENL 226 (467)
T ss_pred hhheecccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCC--CceeehHhhHHHHHHhhc------cCC
Confidence 77654211 11111 111123322222222222211 1111111222 357777877665555333 466
Q ss_pred EEEEecCCcccCCcccccchhhhhhhcch--------------hH--HhhhcCccchhHHhhhhhhhh
Q 018331 258 AFASLYPGCIATTGLFREHIPLFRLLFPP--------------FQ--KYITKGYVSEDEAGKRLAQVV 309 (358)
Q Consensus 258 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~--------------~~--~~~~~~~~~~~~~a~~i~~l~ 309 (358)
-+..++|+.|.++ +......+......+ +. .......+++|.|+.+++...
T Consensus 227 PivIiRPsiI~st-~~EP~pGWidn~~gp~g~i~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~ 293 (467)
T KOG1221|consen 227 PLVIIRPSIITST-YKEPFPGWIDNLNGPDGVIIGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASA 293 (467)
T ss_pred CeEEEcCCceecc-ccCCCCCccccCCCCceEEEEeccceEEEEEEccccccceeeHHHHHHHHHHHH
Confidence 7888888888553 444332222221110 00 111123578999999988544
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.5e-07 Score=87.59 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=65.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|+++|+|| ||+|++++..|++.|+.+|++++|+. ++++...+++......+.+..+|+++.+++...++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~--- 198 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIA--- 198 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhc---
Confidence 468899999999 79999999999999976699999986 56666666665444455667789887777655444
Q ss_pred hcCCCccEEEEcccc
Q 018331 119 RSGRPLDVLVCNAAV 133 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~ 133 (358)
..|+||||...
T Consensus 199 ----~~DilINaTp~ 209 (289)
T PRK12548 199 ----SSDILVNATLV 209 (289)
T ss_pred ----cCCEEEEeCCC
Confidence 56999999854
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-07 Score=77.68 Aligned_cols=206 Identities=13% Similarity=0.095 Sum_probs=124.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga--~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+++||||++|-+|+||.+-+.+.|- .+.++.+.. .+|+++.++.+.+++.. +
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------------d~DLt~~a~t~~lF~~e-----k 55 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------------DADLTNLADTRALFESE-----K 55 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------------cccccchHHHHHHHhcc-----C
Confidence 5799999999999999999999883 244444432 28999999999998854 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+-.||+.|+..+. .+...+. -...+.+|+.-.-++++.+..+..+ ++|+..|.+-+. .+.|.+
T Consensus 56 PthVIhlAAmVGG--lf~N~~y--nldF~r~Nl~indNVlhsa~e~gv~------K~vsclStCIfP----dkt~yP--- 118 (315)
T KOG1431|consen 56 PTHVIHLAAMVGG--LFHNNTY--NLDFIRKNLQINDNVLHSAHEHGVK------KVVSCLSTCIFP----DKTSYP--- 118 (315)
T ss_pred CceeeehHhhhcc--hhhcCCC--chHHHhhcceechhHHHHHHHhchh------hhhhhcceeecC----CCCCCC---
Confidence 7788888865532 1111111 1233445555555666666665443 566665544332 111111
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.+.. +....+.+....|+-+|..+.-..+.++.+. |-...++.|-.+-+| ..++.+.....
T Consensus 119 -----IdEtm-------vh~gpphpsN~gYsyAKr~idv~n~aY~~qh----g~~~tsviPtNvfGp--hDNfnpe~sHV 180 (315)
T KOG1431|consen 119 -----IDETM-------VHNGPPHPSNFGYSYAKRMIDVQNQAYRQQH----GRDYTSVIPTNVFGP--HDNFNPENSHV 180 (315)
T ss_pred -----CCHHH-------hccCCCCCCchHHHHHHHHHHHHHHHHHHHh----CCceeeeccccccCC--CCCCCcccccc
Confidence 10110 1122355777889999977776667777775 677778888777775 23333322221
Q ss_pred cchh-------------------HHhhhcCccchhHHhhhhhhhhcCC
Q 018331 284 FPPF-------------------QKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 284 ~~~~-------------------~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.+.+ ...|.+.++-.+|.|+++++++..-
T Consensus 181 lPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y 228 (315)
T KOG1431|consen 181 LPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREY 228 (315)
T ss_pred hHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhh
Confidence 1110 1123344567788899999888643
|
|
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.7e-07 Score=90.76 Aligned_cols=80 Identities=24% Similarity=0.264 Sum_probs=62.7
Q ss_pred ccCCCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecC
Q 018331 41 KTLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 41 ~~l~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl 104 (358)
.+++||++||||| ||++|+++|+.|+++|+ .|++++++.+ .+ . . . .+..+|+
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga-~V~~v~~~~~-~~-----~--~-~--~~~~~dv 251 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGA-DVTLVSGPVN-LP-----T--P-A--GVKRIDV 251 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCC-EEEEeCCCcc-cc-----C--C-C--CcEEEcc
Confidence 5789999999999 55599999999999996 8988888652 11 0 1 1 2356899
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
++.+++.+.+. +.++++|++|||||+..
T Consensus 252 ~~~~~~~~~v~---~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 252 ESAQEMLDAVL---AALPQADIFIMAAAVAD 279 (399)
T ss_pred CCHHHHHHHHH---HhcCCCCEEEEcccccc
Confidence 99988877766 44678999999999863
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-05 Score=74.02 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=123.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.+|||||||.+|.+++++|+++| +.|++..|+.+...... ..+.+...|+.+..++...++ ++|.
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~-~~v~~~~r~~~~~~~~~-------~~v~~~~~d~~~~~~l~~a~~-------G~~~ 66 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARG-HEVRAAVRNPEAAAALA-------GGVEVVLGDLRDPKSLVAGAK-------GVDG 66 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCC-CEEEEEEeCHHHHHhhc-------CCcEEEEeccCCHhHHHHHhc-------cccE
Confidence 69999999999999999999999 69999999987766553 578899999999999888877 7899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
+++..+... ... ..............+.+- .. ..+++.+|...+..
T Consensus 67 ~~~i~~~~~-~~~----------~~~~~~~~~~~~~a~~a~----~~---~~~~~~~s~~~~~~---------------- 112 (275)
T COG0702 67 VLLISGLLD-GSD----------AFRAVQVTAVVRAAEAAG----AG---VKHGVSLSVLGADA---------------- 112 (275)
T ss_pred EEEEecccc-ccc----------chhHHHHHHHHHHHHHhc----CC---ceEEEEeccCCCCC----------------
Confidence 999988764 211 011222333333444332 11 13677777766542
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEec-CCcccCCcccccchhhhhhhcc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY-PGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~-PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
.....|..+|...+...++ .|+.-..+. ++++....... ..........
T Consensus 113 ---------------------~~~~~~~~~~~~~e~~l~~--------sg~~~t~lr~~~~~~~~~~~~-~~~~~~~~~~ 162 (275)
T COG0702 113 ---------------------ASPSALARAKAAVEAALRS--------SGIPYTTLRRAAFYLGAGAAF-IEAAEAAGLP 162 (275)
T ss_pred ---------------------CCccHHHHHHHHHHHHHHh--------cCCCeEEEecCeeeeccchhH-HHHHHhhCCc
Confidence 2455788888885555442 356544444 55544321110 0000000001
Q ss_pred hhHHhh-hcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 286 PFQKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 286 ~~~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...... ....+..++++..+...+..+. ..|..+...++
T Consensus 163 ~~~~~~~~~~~i~~~d~a~~~~~~l~~~~--~~~~~~~l~g~ 202 (275)
T COG0702 163 VIPRGIGRLSPIAVDDVAEALAAALDAPA--TAGRTYELAGP 202 (275)
T ss_pred eecCCCCceeeeEHHHHHHHHHHHhcCCc--ccCcEEEccCC
Confidence 111111 1246789999999999988776 34555555553
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-06 Score=71.84 Aligned_cols=199 Identities=15% Similarity=0.091 Sum_probs=122.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++.++|.||||-.|..+.+++++.+- .+|+++.|....... .+..+.....|.+.+++....
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-------t~k~v~q~~vDf~Kl~~~a~~------- 80 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-------TDKVVAQVEVDFSKLSQLATN------- 80 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-------ccceeeeEEechHHHHHHHhh-------
Confidence 46788899999999999999999999985 368888886411111 123556666888776654333
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+..+|+++||-|..... .+.+..+.|...-.+.+.+++ ++.+- ..++.+||..+..
T Consensus 81 ~qg~dV~FcaLgTTRgk--------aGadgfykvDhDyvl~~A~~A----Ke~Gc--k~fvLvSS~GAd~---------- 136 (238)
T KOG4039|consen 81 EQGPDVLFCALGTTRGK--------AGADGFYKVDHDYVLQLAQAA----KEKGC--KTFVLVSSAGADP---------- 136 (238)
T ss_pred hcCCceEEEeecccccc--------cccCceEeechHHHHHHHHHH----HhCCC--eEEEEEeccCCCc----------
Confidence 34899999999986432 122333444444445555555 33321 3789999988764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.....|-..|.-++.=..+|.- =++..++||++.....-.....+.
T Consensus 137 ---------------------------sSrFlY~k~KGEvE~~v~eL~F-------~~~~i~RPG~ll~~R~esr~gefl 182 (238)
T KOG4039|consen 137 ---------------------------SSRFLYMKMKGEVERDVIELDF-------KHIIILRPGPLLGERTESRQGEFL 182 (238)
T ss_pred ---------------------------ccceeeeeccchhhhhhhhccc-------cEEEEecCcceecccccccccchh
Confidence 2344576777766655444432 278889999998875544433333
Q ss_pred hhhcchhHHhhhcC--ccchhHHhhhhhhhhcCC
Q 018331 281 RLLFPPFQKYITKG--YVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~~~~~~~~~~~~--~~~~~~~a~~i~~l~~~~ 312 (358)
..+..........+ ..++-.++.+++..+..+
T Consensus 183 g~~~~a~l~~~~~R~~s~pv~~~~~amvn~~~~~ 216 (238)
T KOG4039|consen 183 GNLTAALLRSRFQRLLSYPVYGDEVAMVNVLNTS 216 (238)
T ss_pred hheehhhhhhHHHhccCCchhhhhHhHhhccccC
Confidence 33322222111122 245566667777755444
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-06 Score=75.42 Aligned_cols=83 Identities=19% Similarity=0.280 Sum_probs=65.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++|+||+|++|+++++.|+++|+ .|+++.|+.++++...+.+... .......+|..+.+++.+.++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~------ 96 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIK------ 96 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHh------
Confidence 68899999999999999999999999995 9999999988877776666421 123455678888888776664
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
..|+||++...
T Consensus 97 -~~diVi~at~~ 107 (194)
T cd01078 97 -GADVVFAAGAA 107 (194)
T ss_pred -cCCEEEECCCC
Confidence 57988887653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.3e-05 Score=65.52 Aligned_cols=199 Identities=16% Similarity=0.132 Sum_probs=122.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.+.|.||||-+|..++++...+| +.|..+.|++++.... ..+.+++.|+.+++++.+.+. +.|+
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RG-HeVTAivRn~~K~~~~--------~~~~i~q~Difd~~~~a~~l~-------g~Da 65 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRG-HEVTAIVRNASKLAAR--------QGVTILQKDIFDLTSLASDLA-------GHDA 65 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCC-CeeEEEEeChHhcccc--------ccceeecccccChhhhHhhhc-------CCce
Confidence 47899999999999999999999 6999999998776443 357899999999998766655 7999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||..-|..... +.+...+ -.++++..++..+. .|++.|+...+..-... -.+-
T Consensus 66 VIsA~~~~~~~------~~~~~~k-----------~~~~li~~l~~agv--~RllVVGGAGSL~id~g------~rLv-- 118 (211)
T COG2910 66 VISAFGAGASD------NDELHSK-----------SIEALIEALKGAGV--PRLLVVGGAGSLEIDEG------TRLV-- 118 (211)
T ss_pred EEEeccCCCCC------hhHHHHH-----------HHHHHHHHHhhcCC--eeEEEEcCccceEEcCC------ceee--
Confidence 99998876322 1111111 14555556665443 69999987765531111 0011
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
.. |.-+..-|..+++. .-+...|..+ ..+.-.-|+|...-.|+-+.+.- +.....
T Consensus 119 ----------------D~-p~fP~ey~~~A~~~-ae~L~~Lr~~----~~l~WTfvSPaa~f~PGerTg~y---rlggD~ 173 (211)
T COG2910 119 ----------------DT-PDFPAEYKPEALAQ-AEFLDSLRAE----KSLDWTFVSPAAFFEPGERTGNY---RLGGDQ 173 (211)
T ss_pred ----------------cC-CCCchhHHHHHHHH-HHHHHHHhhc----cCcceEEeCcHHhcCCccccCce---Eeccce
Confidence 11 11122234444444 2223444443 35888888898887773322211 111111
Q ss_pred hHH-hhhcCccchhHHhhhhhhhhcCCC
Q 018331 287 FQK-YITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 287 ~~~-~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
+.. .......+.+|.|-+++.-++.+.
T Consensus 174 ll~n~~G~SrIS~aDYAiA~lDe~E~~~ 201 (211)
T COG2910 174 LLVNAKGESRISYADYAIAVLDELEKPQ 201 (211)
T ss_pred EEEcCCCceeeeHHHHHHHHHHHHhccc
Confidence 111 111235789999999998887653
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.26 E-value=5e-06 Score=74.74 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=66.0
Q ss_pred CeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+-.||+.|+| +|+++|+.|+++| +.|++++|+.... .....++.++.++ +.++ +.+.+.+.++.+
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G-~~V~li~r~~~~~-------~~~~~~v~~i~v~--s~~~---m~~~l~~~~~~~ 82 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAG-HEVTLVTTKTAVK-------PEPHPNLSIIEIE--NVDD---LLETLEPLVKDH 82 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCC-CEEEEEECccccc-------CCCCCCeEEEEEe--cHHH---HHHHHHHHhcCC
Confidence 36788877765 9999999999999 4998888763210 0011345565542 2222 333333334579
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHH
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~ 159 (358)
|+||||||.... .+....+.+.|..++++|.+..
T Consensus 83 DivIh~AAvsd~-~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 83 DVLIHSMAVSDY-TPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred CEEEeCCccCCc-eehhhhhhhhhhhhhhhhhhhc
Confidence 999999998753 2344567888999988876654
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.1e-06 Score=80.89 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=61.1
Q ss_pred ccCCCCeEEEEcC---------------CCc-hHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecC
Q 018331 41 KTLRKGSVIITGA---------------SSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 41 ~~l~~k~~lITGa---------------s~g-IG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl 104 (358)
.+++||++||||| |+| +|.++|+.|+.+|+ .|+++.++.... . .. ....+|+
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga-~V~~~~g~~~~~------~---~~--~~~~~~v 248 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGA-DVTLITGPVSLL------T---PP--GVKSIKV 248 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCC-EEEEeCCCCccC------C---CC--CcEEEEe
Confidence 4689999999999 666 99999999999996 888877654211 1 11 2356899
Q ss_pred CCHHHH-HHHHHHHHhcCCCccEEEEcccccCC
Q 018331 105 ASLDSV-RQFVDTFRRSGRPLDVLVCNAAVYLP 136 (358)
Q Consensus 105 ~~~~~i-~~~~~~~~~~~~~iD~lv~~ag~~~~ 136 (358)
++.+++ +.+++++ ++++|++|+|||....
T Consensus 249 ~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 249 STAEEMLEAALNEL---AKDFDIFISAAAVADF 278 (390)
T ss_pred ccHHHHHHHHHHhh---cccCCEEEEccccccc
Confidence 999888 5555443 4679999999999744
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.9e-05 Score=64.94 Aligned_cols=78 Identities=27% Similarity=0.331 Sum_probs=60.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++|.|+ ||.|++++..|+..|+.+|.++.|+.++++...+.+. +..+.++.. .+.. +...
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~--~~~~~~~~~--~~~~---~~~~------ 74 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFG--GVNIEAIPL--EDLE---EALQ------ 74 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHT--GCSEEEEEG--GGHC---HHHH------
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcC--ccccceeeH--HHHH---HHHh------
Confidence 689999999997 9999999999999998789999999999888888772 223444433 3322 3333
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||++.+..
T Consensus 75 -~~DivI~aT~~~ 86 (135)
T PF01488_consen 75 -EADIVINATPSG 86 (135)
T ss_dssp -TESEEEE-SSTT
T ss_pred -hCCeEEEecCCC
Confidence 689999998864
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.6e-05 Score=77.19 Aligned_cols=77 Identities=26% Similarity=0.412 Sum_probs=61.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCc-EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 48 VIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~-~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
|+|.|| |.+|+.+++.|++++.. +|++.+|+.++++...+.+ ...++.++++|+.|.+++.++++ ..|+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~l~~~~~-------~~dv 70 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL--LGDRVEAVQVDVNDPESLAELLR-------GCDV 70 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT----TTTTEEEEE--TTTHHHHHHHHT-------TSSE
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc--cccceeEEEEecCCHHHHHHHHh-------cCCE
Confidence 689999 99999999999999854 8999999998887776554 45689999999999999888877 5699
Q ss_pred EEEccccc
Q 018331 127 LVCNAAVY 134 (358)
Q Consensus 127 lv~~ag~~ 134 (358)
||||+|..
T Consensus 71 Vin~~gp~ 78 (386)
T PF03435_consen 71 VINCAGPF 78 (386)
T ss_dssp EEE-SSGG
T ss_pred EEECCccc
Confidence 99999976
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=75.34 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=67.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+.+||.|+ |+||+.+|..|+++|...|.+.+|+.+++..+..... .++..+++|+.+.+.+.++++ ..|
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---~~v~~~~vD~~d~~al~~li~-------~~d 70 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---GKVEALQVDAADVDALVALIK-------DFD 70 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---ccceeEEecccChHHHHHHHh-------cCC
Confidence 46899999 9999999999999997799999999888877765543 389999999999999888877 459
Q ss_pred EEEEccccc
Q 018331 126 VLVCNAAVY 134 (358)
Q Consensus 126 ~lv~~ag~~ 134 (358)
+|||++...
T Consensus 71 ~VIn~~p~~ 79 (389)
T COG1748 71 LVINAAPPF 79 (389)
T ss_pred EEEEeCCch
Confidence 999999764
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.7e-05 Score=68.44 Aligned_cols=175 Identities=22% Similarity=0.244 Sum_probs=111.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+-+-.++||||+-|-+|..+|+.|-. .|...||+.+--... +.+. ..--++..|+-|...+++++-
T Consensus 41 ~~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp-~~V~-------~~GPyIy~DILD~K~L~eIVV----- 107 (366)
T KOG2774|consen 41 TQKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP-ANVT-------DVGPYIYLDILDQKSLEEIVV----- 107 (366)
T ss_pred cCCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc-hhhc-------ccCCchhhhhhccccHHHhhc-----
Confidence 44566899999999999999999965 476678886643222 1111 123466688888887777654
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
..+||-+||-.+...-- -..+.--..+||+.|.-++.+.+..+-. ++..-|.+++. ....|..
T Consensus 108 n~RIdWL~HfSALLSAv------GE~NVpLA~~VNI~GvHNil~vAa~~kL-------~iFVPSTIGAF----GPtSPRN 170 (366)
T KOG2774|consen 108 NKRIDWLVHFSALLSAV------GETNVPLALQVNIRGVHNILQVAAKHKL-------KVFVPSTIGAF----GPTSPRN 170 (366)
T ss_pred ccccceeeeHHHHHHHh------cccCCceeeeecchhhhHHHHHHHHcCe-------eEeeccccccc----CCCCCCC
Confidence 24899999988765221 1112234578999999999988866522 44444444433 2223333
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEe-cCCcccC
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASL-YPGCIAT 269 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v-~PG~v~t 269 (358)
+..+. .-..+...||.||.--+.+.+.+..++ |+.+-++ -||.+..
T Consensus 171 PTPdl-------------------tIQRPRTIYGVSKVHAEL~GEy~~hrF----g~dfr~~rfPg~is~ 217 (366)
T KOG2774|consen 171 PTPDL-------------------TIQRPRTIYGVSKVHAELLGEYFNHRF----GVDFRSMRFPGIISA 217 (366)
T ss_pred CCCCe-------------------eeecCceeechhHHHHHHHHHHHHhhc----CccceecccCccccc
Confidence 22221 122456789999999888888888776 6666655 3555544
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=75.82 Aligned_cols=159 Identities=10% Similarity=-0.001 Sum_probs=97.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..+++.|||++|.||..++..|+.++. ..+++++.+. .+-...++....... ...++++.+++.+.++
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~--~i~~~~~~~d~~~~l~------- 85 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPA--QVRGFLGDDQLGDALK------- 85 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCc--eEEEEeCCCCHHHHcC-------
Confidence 345899999999999999999997773 5799999976 111111222111111 2234333333333333
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC----CCCCcCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG----NTNTLAGNVP 198 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~----~~~~~~~~~~ 198 (358)
..|+||+.||....+ .+.+...+..|+.....+.+.+..+-. ++.++++|-..- .....
T Consensus 86 ~aDiVVitAG~~~~~-------g~~R~dll~~N~~i~~~i~~~i~~~~p-----~aivivvSNPvD~~~~i~t~~----- 148 (323)
T PLN00106 86 GADLVIIPAGVPRKP-------GMTRDDLFNINAGIVKTLCEAVAKHCP-----NALVNIISNPVNSTVPIAAEV----- 148 (323)
T ss_pred CCCEEEEeCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHCC-----CeEEEEeCCCccccHHHHHHH-----
Confidence 799999999985331 133566778888887777766655542 245555554443 21100
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH 252 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~ 252 (358)
.....+++....||.++.--..|...++++++
T Consensus 149 ----------------------~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~lg 180 (323)
T PLN00106 149 ----------------------LKKAGVYDPKKLFGVTTLDVVRANTFVAEKKG 180 (323)
T ss_pred ----------------------HHHcCCCCcceEEEEecchHHHHHHHHHHHhC
Confidence 00112556677888888777788888888873
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=3e-05 Score=73.07 Aligned_cols=121 Identities=15% Similarity=-0.008 Sum_probs=75.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+++.|||++|.||..++..|+.++ ++.+++++++. ++....++...... ....+.++..++.+.++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~--~~g~a~Dl~~~~~~--~~v~~~td~~~~~~~l~------ 75 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVG--APGVAADLSHIDTP--AKVTGYADGELWEKALR------ 75 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCC--CcccccchhhcCcC--ceEEEecCCCchHHHhC------
Confidence 566789999999999999999999666 35899999932 22211122221122 22345555443333333
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
..|+||+++|....+ .+.+...+..|+...-.+++.+.++-. .++|+++|..
T Consensus 76 -gaDvVVitaG~~~~~-------~~tR~dll~~N~~i~~~i~~~i~~~~~------~~iviv~SNP 127 (321)
T PTZ00325 76 -GADLVLICAGVPRKP-------GMTRDDLFNTNAPIVRDLVAAVASSAP------KAIVGIVSNP 127 (321)
T ss_pred -CCCEEEECCCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHCC------CeEEEEecCc
Confidence 789999999975221 133566777888777777766655532 3666666653
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4e-05 Score=72.50 Aligned_cols=75 Identities=20% Similarity=0.283 Sum_probs=55.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|+++||||+|.||+.++++|+++ |+..++++.|+...+.....++. ..|+. ++.+
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~---------~~~i~---~l~~------- 211 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELG---------GGKIL---SLEE------- 211 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhc---------cccHH---hHHH-------
Confidence 3689999999999999999999999864 65689999999877766655432 12222 2222
Q ss_pred cCCCccEEEEccccc
Q 018331 120 SGRPLDVLVCNAAVY 134 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~ 134 (358)
.+...|+||++++..
T Consensus 212 ~l~~aDiVv~~ts~~ 226 (340)
T PRK14982 212 ALPEADIVVWVASMP 226 (340)
T ss_pred HHccCCEEEECCcCC
Confidence 233689999999875
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=68.78 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=116.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH-HHHh-cC----CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA-AKSA-GM----AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~-~~~~-~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.|++||||-+|-=|..++..|+.+| +.|..+-|..+.-... .+.+ .. .+.......+|++|...+.++++.+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~Kg-YeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i- 105 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKG-YEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTI- 105 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCC-ceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhcc-
Confidence 4699999999999999999999999 8999887765432211 1222 11 2456677889999999998888876
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+++-|.|-|+..+-.- +.+--+.+-+|...|++.++.+...+-.... -|+- -.|.+-.++..
T Consensus 106 ----kPtEiYnLaAQSHVkv-----SFdlpeYTAeVdavGtLRlLdAi~~c~l~~~---VrfY-QAstSElyGkv----- 167 (376)
T KOG1372|consen 106 ----KPTEVYNLAAQSHVKV-----SFDLPEYTAEVDAVGTLRLLDAIRACRLTEK---VRFY-QASTSELYGKV----- 167 (376)
T ss_pred ----CchhhhhhhhhcceEE-----EeecccceeeccchhhhhHHHHHHhcCcccc---eeEE-ecccHhhcccc-----
Confidence 5777888777654321 2222344566788899999888876655442 2333 23333222110
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc--ccCCcEEEEecC
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH--EETGIAFASLYP 264 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~--~~~gI~v~~v~P 264 (358)
...+-.+..|+-+.+.|+++|++--..+-.+...+. +-.||-+|.=.|
T Consensus 168 ------------------~e~PQsE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESP 217 (376)
T KOG1372|consen 168 ------------------QEIPQSETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESP 217 (376)
T ss_pred ------------------cCCCcccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCC
Confidence 011223456788888999999984443333333321 345777776555
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0001 Score=72.96 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=58.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|+++|+|+++ +|.++|+.|+++| +.|.+++++. ...+...+++... .+.++..|..+. .
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G-~~V~~~d~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~------------~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLG-AKVILTDEKEEDQLKEALEELGEL--GIELVLGEYPEE------------F 65 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHHHHHhc--CCEEEeCCcchh------------H
Confidence 57899999999888 9999999999999 5999999975 3344434444322 356777787751 1
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
.+.+|+||+++|..
T Consensus 66 ~~~~d~vv~~~g~~ 79 (450)
T PRK14106 66 LEGVDLVVVSPGVP 79 (450)
T ss_pred hhcCCEEEECCCCC
Confidence 24789999999974
|
|
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=67.68 Aligned_cols=80 Identities=23% Similarity=0.250 Sum_probs=69.0
Q ss_pred eEEEEcCCCchHHHHHHHHHh----CCCcEEEEEecChHHHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAE----TGKWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~----~Ga~~Vi~~~r~~~~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
-++|.||||.-|.-++.+++. .| ..+.+.+||++++++..+.+.... ....++-+|.+|++++.+++++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~-~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~-- 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEG-LSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ-- 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccC-ceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhh--
Confidence 489999999999999999998 77 689999999999999988886653 2234888999999999999884
Q ss_pred hcCCCccEEEEccccc
Q 018331 119 RSGRPLDVLVCNAAVY 134 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~ 134 (358)
..+||||+|..
T Consensus 84 -----~~vivN~vGPy 94 (423)
T KOG2733|consen 84 -----ARVIVNCVGPY 94 (423)
T ss_pred -----hEEEEeccccc
Confidence 56999999976
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0002 Score=67.88 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=68.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecChHH--HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK------WHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~~~--~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++||||+|.||.+++..|+..+. ..|++++++... ++....++.. .......|+....+..+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d---~~~~~~~~~~~~~~~~~------ 74 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQD---CAFPLLKSVVATTDPEE------ 74 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhh---ccccccCCceecCCHHH------
Confidence 589999999999999999998552 379999996421 1110000000 00011113322222222
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.+...|+||++||..... ..+. ...+..|+. +++.+.+.+.+...+++.++++|...-.
T Consensus 75 -~l~~aDiVI~tAG~~~~~----~~~R---~~l~~~N~~----i~~~i~~~i~~~~~~~~iiivvsNPvD~ 133 (325)
T cd01336 75 -AFKDVDVAILVGAMPRKE----GMER---KDLLKANVK----IFKEQGEALDKYAKKNVKVLVVGNPANT 133 (325)
T ss_pred -HhCCCCEEEEeCCcCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEecCcHHH
Confidence 234799999999986332 1232 344555554 4455555545442224788888876543
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.8e-05 Score=67.76 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=50.4
Q ss_pred CCCCeEEEEcCC----------------CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC
Q 018331 43 LRKGSVIITGAS----------------SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106 (358)
Q Consensus 43 l~~k~~lITGas----------------~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~ 106 (358)
|+||++|||+|. |.+|+++|+.|+++|+ .|+++++....... ... .......+..|
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga-~V~li~g~~~~~~~---~~~-~~~~~~~V~s~--- 72 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGA-HVIYLHGYFAEKPN---DIN-NQLELHPFEGI--- 72 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCC-eEEEEeCCCcCCCc---ccC-CceeEEEEecH---
Confidence 579999999886 9999999999999995 88877753211000 000 01122333332
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
.++.+.+.++... .++|+|||+|+...
T Consensus 73 -~d~~~~l~~~~~~-~~~D~VIH~AAvsD 99 (229)
T PRK09620 73 -IDLQDKMKSIITH-EKVDAVIMAAAGSD 99 (229)
T ss_pred -HHHHHHHHHHhcc-cCCCEEEECccccc
Confidence 2222233333221 25899999999863
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00053 Score=57.39 Aligned_cols=78 Identities=28% Similarity=0.358 Sum_probs=56.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++|+|+ |++|.++++.|++.|...|++++|+.+..+...+.+.... +..+..+.++. .
T Consensus 16 ~~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----------~ 79 (155)
T cd01065 16 ELKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG-----IAIAYLDLEEL----------L 79 (155)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc-----cceeecchhhc----------c
Confidence 366789999998 8999999999999964589999999877776665543211 22334433322 2
Q ss_pred CCccEEEEcccccC
Q 018331 122 RPLDVLVCNAAVYL 135 (358)
Q Consensus 122 ~~iD~lv~~ag~~~ 135 (358)
...|+||++.....
T Consensus 80 ~~~Dvvi~~~~~~~ 93 (155)
T cd01065 80 AEADLIINTTPVGM 93 (155)
T ss_pred ccCCEEEeCcCCCC
Confidence 37899999997653
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=66.59 Aligned_cols=162 Identities=11% Similarity=-0.008 Sum_probs=95.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-c-----EEEEEecChHH--HHHHHHHhcCCC----CceEEEEecCCCHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFLK--AERAAKSAGMAK----ENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~-----~Vi~~~r~~~~--~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~ 113 (358)
+.+.|+|++|.+|..++..|+..|. . .+++++.++.. ++-...++.... .++.+. -.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~---~~~------- 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT---DDP------- 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe---cCc-------
Confidence 4689999999999999999998883 4 69999985422 322222222110 111111 011
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
.+.+..-|+||.+||....+ ..+. ...+..| .-+++.+.+.+.+...+.+.++++|-..-.+.+.
T Consensus 73 ----~~~~~daDivvitaG~~~k~----g~tR---~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~ 137 (322)
T cd01338 73 ----NVAFKDADWALLVGAKPRGP----GMER---ADLLKAN----GKIFTAQGKALNDVASRDVKVLVVGNPCNTNALI 137 (322)
T ss_pred ----HHHhCCCCEEEEeCCCCCCC----CCcH---HHHHHHH----HHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHH
Confidence 11234689999999975322 2233 2234444 4455666666555442247888888655333211
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCC-CCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEE
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG-DFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAF 259 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v 259 (358)
.. ... +++....|+.++..-..|...+++.++- ...|+.
T Consensus 138 ~~---------------------------k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~ 178 (322)
T cd01338 138 AM---------------------------KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKN 178 (322)
T ss_pred HH---------------------------HHcCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEE
Confidence 11 012 3677778999999999999999998742 234553
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00042 Score=64.25 Aligned_cols=78 Identities=24% Similarity=0.295 Sum_probs=56.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|+++|+|+ ||+|++++..|+..|+.+|+++.|+.++++...+.+.... .+. .++ +.. +.
T Consensus 119 ~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~---~~~----~~~-------~~ 182 (278)
T PRK00258 119 VDLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG-KAE---LDL----ELQ-------EE 182 (278)
T ss_pred CCCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc-cee---ecc----cch-------hc
Confidence 3678999999997 9999999999999996589999999888877776654221 111 111 011 11
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
....|+|||+....
T Consensus 183 ~~~~DivInaTp~g 196 (278)
T PRK00258 183 LADFDLIINATSAG 196 (278)
T ss_pred cccCCEEEECCcCC
Confidence 23689999998654
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0013 Score=62.19 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=71.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc------EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHH--H--HHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV--R--QFVDT 116 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~------~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i--~--~~~~~ 116 (358)
.+.||||+|.+|..++..|+..|.. .+++++++... +.......|+.+.... . .+...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~------------~~~~g~~~Dl~d~~~~~~~~~~i~~~ 69 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM------------KALEGVVMELQDCAFPLLKGVVITTD 69 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc------------CccceeeeehhhhcccccCCcEEecC
Confidence 5899999999999999999987732 49999997521 1234445555554200 0 00011
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
..+.+...|+||+.||....+ ..+. ...+..| ..+++.+.+.+.+...+++.++++|-..-
T Consensus 70 ~~~~~~~aDiVVitAG~~~~~----g~tR---~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsNPvD 130 (323)
T cd00704 70 PEEAFKDVDVAILVGAFPRKP----GMER---ADLLRKN----AKIFKEQGEALNKVAKPTVKVLVVGNPAN 130 (323)
T ss_pred hHHHhCCCCEEEEeCCCCCCc----CCcH---HHHHHHh----HHHHHHHHHHHHHhCCCCeEEEEeCCcHH
Confidence 223345799999999985332 2232 3334444 45566666666555323578888876543
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0051 Score=57.13 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|++++|+|+++++|.++++.+...|+ .|++++++....+... .+. .. ..+|..+.+..+.+.+ ... .+.
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~-~~g---~~---~~~~~~~~~~~~~~~~-~~~-~~~ 213 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVR-QAG---AD---AVFNYRAEDLADRILA-ATA-GQG 213 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HcC---CC---EEEeCCCcCHHHHHHH-HcC-CCc
Confidence 588999999999999999999999995 8999999876655542 222 11 1245554444444322 222 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++++++|.
T Consensus 214 ~d~vi~~~~~ 223 (325)
T cd08253 214 VDVIIEVLAN 223 (325)
T ss_pred eEEEEECCch
Confidence 9999999874
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=64.31 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++++++|.|+ ||.|+.+++.|+.+|+..|+++.|+..+++...+.+.. .. ....++..+.
T Consensus 177 ~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~----~~-----~~~~~~l~~~------- 239 (414)
T PRK13940 177 DNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRN----AS-----AHYLSELPQL------- 239 (414)
T ss_pred cCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcC----Ce-----EecHHHHHHH-------
Confidence 4689999999998 99999999999999977899999998887777666531 11 1122232222
Q ss_pred CCCccEEEEcccccC
Q 018331 121 GRPLDVLVCNAAVYL 135 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~ 135 (358)
+...|+||++.+...
T Consensus 240 l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 240 IKKADIIIAAVNVLE 254 (414)
T ss_pred hccCCEEEECcCCCC
Confidence 236899999998753
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0017 Score=59.85 Aligned_cols=76 Identities=22% Similarity=0.250 Sum_probs=54.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..++|+++|+|+ ||+|++++..|++.|+ .|.+++|+.++.+...+.+...+ .+.....| + . ..
T Consensus 114 ~~~~k~vliiGa-Gg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~-~~~~~~~~-----~---~------~~ 176 (270)
T TIGR00507 114 LRPNQRVLIIGA-GGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYG-EIQAFSMD-----E---L------PL 176 (270)
T ss_pred CccCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcC-ceEEechh-----h---h------cc
Confidence 356889999998 7999999999999995 99999999888777776664322 12222111 1 0 12
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+|||+.+..
T Consensus 177 ~~~DivInatp~g 189 (270)
T TIGR00507 177 HRVDLIINATSAG 189 (270)
T ss_pred cCccEEEECCCCC
Confidence 3689999999864
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0036 Score=59.25 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=72.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc------EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHH--HH--HH
Q 018331 47 SVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQ--FV--DT 116 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~------~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~--~~--~~ 116 (358)
++.|+|++|.+|..++..|+..|.. .++++++++.. +.......|+.+...... .. ..
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~------------~~a~g~~~Dl~d~~~~~~~~~~~~~~ 68 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAM------------KVLEGVVMELMDCAFPLLDGVVPTHD 68 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcc------------cccceeEeehhcccchhcCceeccCC
Confidence 3789999999999999999987742 59999986432 113445556655541110 00 01
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..+.+...|+||++||....+ .+.+...+..|+. +++.+.+.+.+...+++.++++|...-.
T Consensus 69 ~~~~~~~aDiVVitAG~~~~~-------~~tr~~ll~~N~~----i~k~i~~~i~~~~~~~~iiivvsNPvDv 130 (324)
T TIGR01758 69 PAVAFTDVDVAILVGAFPRKE-------GMERRDLLSKNVK----IFKEQGRALDKLAKKDCKVLVVGNPANT 130 (324)
T ss_pred hHHHhCCCCEEEEcCCCCCCC-------CCcHHHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 122345799999999975221 1234555555554 5555555555542124788888866543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=59.93 Aligned_cols=80 Identities=23% Similarity=0.129 Sum_probs=56.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|.|+ ||.|++++..|++.|+.+|.++.|+.++++...+.+... ..+. . +...+++.. ..
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~-~~~~--~--~~~~~~~~~-------~~ 188 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQV-GVIT--R--LEGDSGGLA-------IE 188 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhc-Ccce--e--ccchhhhhh-------cc
Confidence 467899999976 999999999999999878999999988888777665322 1111 1 111122111 12
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+|||+....
T Consensus 189 ~~~DiVInaTp~g 201 (282)
T TIGR01809 189 KAAEVLVSTVPAD 201 (282)
T ss_pred cCCCEEEECCCCC
Confidence 3689999998763
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=65.64 Aligned_cols=47 Identities=28% Similarity=0.433 Sum_probs=41.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
++++|+++|+|+ ||+|++++..|+++|+ +|+++.|+.++++...+.+
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~-~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGA-RVVIANRTYERAKELADAV 422 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh
Confidence 578999999999 7999999999999997 9999999988777776655
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0038 Score=57.90 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=55.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|.|+ ||-|++++..|++.|+.+|.++.|+.++++...+.+............+ ........
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~---~~~~~~~~------- 192 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVD---ARGIEDVI------- 192 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecC---HhHHHHHH-------
Confidence 467899999997 9999999999999998789999999988887776654221111111122 21221111
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
...|+|||+...
T Consensus 193 ~~~divINaTp~ 204 (283)
T PRK14027 193 AAADGVVNATPM 204 (283)
T ss_pred hhcCEEEEcCCC
Confidence 258999999754
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0029 Score=58.80 Aligned_cols=78 Identities=21% Similarity=0.088 Sum_probs=55.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|.|+ ||.|++++..|+..|+.+|.+++|+.++++...+.+......+.+... . ++.+. .
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~--~---~~~~~-------~ 190 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAG--S---DLAAA-------L 190 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEec--c---chHhh-------h
Confidence 567889999997 789999999999999878999999998888887776433222222221 1 11111 2
Q ss_pred CCccEEEEccc
Q 018331 122 RPLDVLVCNAA 132 (358)
Q Consensus 122 ~~iD~lv~~ag 132 (358)
...|+|||+..
T Consensus 191 ~~aDiVInaTp 201 (284)
T PRK12549 191 AAADGLVHATP 201 (284)
T ss_pred CCCCEEEECCc
Confidence 35899999953
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.014 Score=54.70 Aligned_cols=81 Identities=26% Similarity=0.288 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..+++++|+|+++++|.+++..+...|+ .|++++++....+.+. .+ +.. ...|..+.+....+.+... .+
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~-~~---~~~---~~~~~~~~~~~~~~~~~~~--~~ 234 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAK-EL---GAD---YVIDYRKEDFVREVRELTG--KR 234 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-Hc---CCC---eEEecCChHHHHHHHHHhC--CC
Confidence 3578999999999999999999999995 8889998876655432 22 111 1246666555555443322 23
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++++++|.
T Consensus 235 ~~d~~i~~~g~ 245 (342)
T cd08266 235 GVDVVVEHVGA 245 (342)
T ss_pred CCcEEEECCcH
Confidence 69999999883
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00092 Score=66.19 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=51.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|||+++ +|.++++.|++.|+ .|++.+++........+.+...+ +.++..... ..+ ..
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~-~V~~~d~~~~~~~~~~~~l~~~g--~~~~~~~~~--~~~---~~------ 66 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGA-NVTVNDGKPFSENPEAQELLEEG--IKVICGSHP--LEL---LD------ 66 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCC-EEEEEcCCCccchhHHHHHHhcC--CEEEeCCCC--HHH---hc------
Confidence 57899999999986 99999999999995 99999876533333333343222 233222111 111 11
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..+|+||+++|+.
T Consensus 67 ~~~d~vV~s~gi~ 79 (447)
T PRK02472 67 EDFDLMVKNPGIP 79 (447)
T ss_pred CcCCEEEECCCCC
Confidence 1489999999975
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0031 Score=54.71 Aligned_cols=78 Identities=21% Similarity=0.245 Sum_probs=47.7
Q ss_pred CCCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC
Q 018331 43 LRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106 (358)
Q Consensus 43 l~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~ 106 (358)
|+||++|||+| ||-.|.++|+.++.+|| .|+++.... .... ...+. ..++.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga-~V~li~g~~-~~~~--------p~~~~--~i~v~s 68 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGA-EVTLIHGPS-SLPP--------PPGVK--VIRVES 68 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT--EEEEEE-TT-S------------TTEE--EEE-SS
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCC-EEEEEecCc-cccc--------cccce--EEEecc
Confidence 57888888876 56789999999999997 777777653 2111 12343 345666
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
.+++.+.+.+.. +.-|++|++|+...
T Consensus 69 a~em~~~~~~~~---~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 69 AEEMLEAVKELL---PSADIIIMAAAVSD 94 (185)
T ss_dssp HHHHHHHHHHHG---GGGSEEEE-SB--S
T ss_pred hhhhhhhhcccc---CcceeEEEecchhh
Confidence 666666666554 34599999999863
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0079 Score=58.05 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=55.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.+++++|.|+ |.+|+..++.+...|+ +|++++|+...++.....+. . .+..+..+.+.+.+.+.
T Consensus 164 ~l~~~~VlViGa-G~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g---~---~v~~~~~~~~~l~~~l~------ 229 (370)
T TIGR00518 164 GVEPGDVTIIGG-GVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFG---G---RIHTRYSNAYEIEDAVK------ 229 (370)
T ss_pred CCCCceEEEEcC-CHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcC---c---eeEeccCCHHHHHHHHc------
Confidence 356777999977 8999999999999997 89999999877665544432 1 12234455555444332
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||++++..
T Consensus 230 -~aDvVI~a~~~~ 241 (370)
T TIGR00518 230 -RADLLIGAVLIP 241 (370)
T ss_pred -cCCEEEEccccC
Confidence 579999998653
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.013 Score=48.40 Aligned_cols=115 Identities=21% Similarity=0.161 Sum_probs=71.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---C-CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---K-ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|+|++|.+|.+++..|+..+. ..+++++++++.++-...++... . ....+.. .+.+. +
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~~-----------~ 67 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS---GDYEA-----------L 67 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE---SSGGG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc---ccccc-----------c
Confidence 488999999999999999999884 67999999987666555554321 1 1222222 22221 2
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
..-|+||..+|....+ ..+ -...++.|..-. +...+.+.+.. +++.++.+|...
T Consensus 68 ~~aDivvitag~~~~~----g~s---R~~ll~~N~~i~----~~~~~~i~~~~-p~~~vivvtNPv 121 (141)
T PF00056_consen 68 KDADIVVITAGVPRKP----GMS---RLDLLEANAKIV----KEIAKKIAKYA-PDAIVIVVTNPV 121 (141)
T ss_dssp TTESEEEETTSTSSST----TSS---HHHHHHHHHHHH----HHHHHHHHHHS-TTSEEEE-SSSH
T ss_pred ccccEEEEeccccccc----ccc---HHHHHHHhHhHH----HHHHHHHHHhC-CccEEEEeCCcH
Confidence 3689999999985322 123 233445555444 44444444433 247888886654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0042 Score=58.56 Aligned_cols=119 Identities=14% Similarity=-0.022 Sum_probs=64.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-CC-CcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAE-TG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~-~G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.++|.||+|+||.+++..|.. .+ ++.+++++|++. .+.....+........+..++-.+ +.+. +..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d---~~~~-------l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGED---PTPA-------LEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCC---HHHH-------cCC
Confidence 3689999999999999998865 33 257888888743 211111121111111111111111 1111 236
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.|+||.++|....+ ..+ -...+..|....-.+.+.+.++-. ++.|+++|-..
T Consensus 70 ~DiVIitaG~~~~~----~~~---R~dll~~N~~i~~~ii~~i~~~~~-----~~ivivvsNP~ 121 (312)
T PRK05086 70 ADVVLISAGVARKP----GMD---RSDLFNVNAGIVKNLVEKVAKTCP-----KACIGIITNPV 121 (312)
T ss_pred CCEEEEcCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhCC-----CeEEEEccCch
Confidence 99999999986432 112 234456666655555555554421 24555555554
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0022 Score=59.49 Aligned_cols=124 Identities=17% Similarity=0.139 Sum_probs=80.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.||+|..|.-++++|+.+| .+..+.+||..++..+...+. .+...+.+++ ++.+++.++ +.++
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g-~~~aLAgRs~~kl~~l~~~LG---~~~~~~p~~~--p~~~~~~~~-------~~~V 74 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREG-LTAALAGRSSAKLDALRASLG---PEAAVFPLGV--PAALEAMAS-------RTQV 74 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcC-CchhhccCCHHHHHHHHHhcC---ccccccCCCC--HHHHHHHHh-------cceE
Confidence 58999999999999999999999 588999999999998888775 3444444444 666666555 7899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHh---hhhhhhhHHHHHHHHHHHHHhcC-CCCCCeEEEEecCC
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFEL---SVGTNHLGHFLLSRLLLDDLKQS-DYPSKRLIIVGSIT 187 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~---~~~vN~~~~~~l~~~~~~~l~~~-~~~~g~iv~vsS~~ 187 (358)
|+||+|.+..-. .+.-.--. +-=+.+.|-+++++.....-.+. ...+.+||.-...-
T Consensus 75 VlncvGPyt~~g----~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFD 135 (382)
T COG3268 75 VLNCVGPYTRYG----EPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFD 135 (382)
T ss_pred EEeccccccccc----cHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCC
Confidence 999999874311 11111110 11123456677777766652221 22245666654433
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0083 Score=52.85 Aligned_cols=85 Identities=24% Similarity=0.336 Sum_probs=57.0
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-------------------hHHHHHHHHHhcCCCCc--e
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMAKEN--Y 97 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~--i 97 (358)
....|++++++|.| .||+|.++++.|+..|..++.+++.+ ..+.+.+.+.+...+.. +
T Consensus 15 ~q~kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i 93 (202)
T TIGR02356 15 GQQRLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQV 93 (202)
T ss_pred HHHHhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEE
Confidence 34578899999998 68999999999999998789998876 23445555555544443 3
Q ss_pred EEEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 98 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 98 ~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
..+..++.. +.+.+++ ...|+||.+..
T Consensus 94 ~~~~~~i~~-~~~~~~~-------~~~D~Vi~~~d 120 (202)
T TIGR02356 94 TALKERVTA-ENLELLI-------NNVDLVLDCTD 120 (202)
T ss_pred EEehhcCCH-HHHHHHH-------hCCCEEEECCC
Confidence 333334432 2333332 36788888764
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0091 Score=55.59 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=39.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAG 91 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~ 91 (358)
++++|+++|.|+ ||-+++++..|+..|+.+|.++.|+. ++++...+.+.
T Consensus 121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 578899999997 66699999999999987999999995 35555555553
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0069 Score=57.68 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=60.2
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---------------------HHHHHHHHHhcCCCC
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------------------LKAERAAKSAGMAKE 95 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---------------------~~~~~~~~~~~~~~~ 95 (358)
..+...|++++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+...+.
T Consensus 16 ~~~Q~~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp 94 (338)
T PRK12475 16 EEGQRKIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS 94 (338)
T ss_pred HHHHHhhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC
Confidence 34456789999999997 78999999999999977899988863 234444455544333
Q ss_pred --ceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 96 --NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 96 --~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
++..+..|++ .+.+.+++ ...|+||.+..
T Consensus 95 ~v~i~~~~~~~~-~~~~~~~~-------~~~DlVid~~D 125 (338)
T PRK12475 95 EVEIVPVVTDVT-VEELEELV-------KEVDLIIDATD 125 (338)
T ss_pred CcEEEEEeccCC-HHHHHHHh-------cCCCEEEEcCC
Confidence 4556666765 23344433 26788888764
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0055 Score=56.65 Aligned_cols=80 Identities=30% Similarity=0.295 Sum_probs=58.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+.++++++|.|| ||-+++++..|++.|+.+|.++.|+.+++++..+.+...+..+.+ .+..+.+..+
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~--~~~~~~~~~~--------- 189 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEA--AALADLEGLE--------- 189 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccc--cccccccccc---------
Confidence 4567899999986 789999999999999878999999999988888877654432222 2222222111
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
..|+|||+....
T Consensus 190 --~~dliINaTp~G 201 (283)
T COG0169 190 --EADLLINATPVG 201 (283)
T ss_pred --ccCEEEECCCCC
Confidence 379999998654
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0091 Score=56.25 Aligned_cols=75 Identities=29% Similarity=0.435 Sum_probs=55.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+++++|.|+ |.+|..+++.|...|+..|++++|+.++.+...+.+.. .++ +.+++.+.+.
T Consensus 175 ~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-----~~~-----~~~~~~~~l~------ 237 (311)
T cd05213 175 NLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-----NAV-----PLDELLELLN------ 237 (311)
T ss_pred CccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-----eEE-----eHHHHHHHHh------
Confidence 478999999987 99999999999998877899999998777776666532 121 2223333332
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||.+.+..
T Consensus 238 -~aDvVi~at~~~ 249 (311)
T cd05213 238 -EADVVISATGAP 249 (311)
T ss_pred -cCCEEEECCCCC
Confidence 579999998864
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.024 Score=53.28 Aligned_cols=116 Identities=18% Similarity=0.135 Sum_probs=72.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|.|+ |++|.+++..|+..|. ..|++++++.+.++.....+... ........ .+.+. +
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~~~-----------l 66 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDYSD-----------C 66 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCHHH-----------h
Confidence 5788886 9999999999999995 48999999987776666555322 11222221 22211 1
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
...|+||+++|....+ ..+. ...+..|. .+++...+.+.+.. +++.++++|-....
T Consensus 67 ~~aDIVIitag~~~~~----g~~R---~dll~~N~----~i~~~~~~~i~~~~-~~~~vivvsNP~d~ 122 (306)
T cd05291 67 KDADIVVITAGAPQKP----GETR---LDLLEKNA----KIMKSIVPKIKASG-FDGIFLVASNPVDV 122 (306)
T ss_pred CCCCEEEEccCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHHhC-CCeEEEEecChHHH
Confidence 3689999999975322 2233 23344444 45555555555443 25788888866543
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.01 Score=58.35 Aligned_cols=75 Identities=28% Similarity=0.399 Sum_probs=55.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+++++|.|+ |.+|..+++.|...|+..|++++|+...++...+.+. . +....++..+.+
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g---~-------~~~~~~~~~~~l------- 240 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG---G-------EAIPLDELPEAL------- 240 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---C-------cEeeHHHHHHHh-------
Confidence 588999999987 9999999999999997689999999877776665543 1 111223332222
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+||.+.|..
T Consensus 241 ~~aDvVI~aT~s~ 253 (423)
T PRK00045 241 AEADIVISSTGAP 253 (423)
T ss_pred ccCCEEEECCCCC
Confidence 2589999998754
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0033 Score=55.30 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=40.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
.+++||+++|+|.. .+|+.+++.|.+.|+ +|++++++.+.++...+.
T Consensus 24 ~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 24 DSLEGKTVAVQGLG-KVGYKLAEHLLEEGA-KLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHH
Confidence 47899999999995 899999999999996 999999998776666554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.032 Score=65.79 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=109.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.++.++|++..++++.+++..|.++|+ .|+++..... ........+..+-.+.+.-.+..++..+++.+....
T Consensus 1752 ~~~~~~~~v~~d~~~~~~~L~~~L~~~G~-~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1826 (2582)
T TIGR02813 1752 KQSGANALVIDDDGHNAGVLAEKLIAAGW-QVAVVRSPWV----VSHSASPLASAIASVTLGTIDDTSIEAVIKDIEEKT 1826 (2582)
T ss_pred cccCceeEEEcCCcchHHHHHHHHHhCCC-eEEEeecccc----ccccccccccccccccccccchHHHHHHHHhhhccc
Confidence 45688899999899999999999999995 7776642211 000001112234455666667788888888887777
Q ss_pred CCccEEEEcccccCCC-CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+.++.+||..+..... ...... .+...-...+...|.+.|.+.+.+...+ ++.++.|+...|..+.....
T Consensus 1827 ~~~~g~i~l~~~~~~~~~~~~~~---~~~~~~~~~l~~~f~~ak~~~~~l~~~~--~~~~~~vsr~~G~~g~~~~~---- 1897 (2582)
T TIGR02813 1827 AQIDGFIHLQPQHKSVADKVDAI---ELPEAAKQSLMLAFLFAKLLNVKLATNA--RASFVTVSRIDGGFGYSNGD---- 1897 (2582)
T ss_pred cccceEEEecccccccccccccc---ccchhhHHHHHHHHHHHHhhchhhccCC--CeEEEEEEecCCccccCCcc----
Confidence 8899999988755221 000000 0111111234456777777766655433 36888888887664221100
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchh--hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 265 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG 265 (358)
...++ ..-....+++.+|+|++++|+ ..-.++...+.|.
T Consensus 1898 -------------------------~~~~~~~~~~~~~~a~l~Gl~Ktl~~E~-P~~~~r~vDl~~~ 1938 (2582)
T TIGR02813 1898 -------------------------ADSGTQQVKAELNQAALAGLTKTLNHEW-NAVFCRALDLAPK 1938 (2582)
T ss_pred -------------------------ccccccccccchhhhhHHHHHHhHHHHC-CCCeEEEEeCCCC
Confidence 00000 001235688999999999999 4334555555554
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=56.05 Aligned_cols=81 Identities=11% Similarity=0.161 Sum_probs=53.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|..+++.+...|+ +|+.+++++++.+.+.+.+.. . .+ .|..+.++..+.+.+.. .++
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~~~~lGa---~-~v--i~~~~~~~~~~~i~~~~--~~g 221 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLLKNKLGF---D-DA--FNYKEEPDLDAALKRYF--PNG 221 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhcCC---c-ee--EEcCCcccHHHHHHHhC--CCC
Confidence 578999999999999999998888997 888889887766655443431 1 22 23222222233333332 146
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 222 vd~v~d~~g~ 231 (338)
T cd08295 222 IDIYFDNVGG 231 (338)
T ss_pred cEEEEECCCH
Confidence 9999988773
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.011 Score=56.09 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC--C
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG--R 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~--~ 122 (358)
|.++||+||+||+|...++.....|+ .++++..++++.+ ..+++. .. +. .|..+.+ +.+++.+.. .
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~-~~~~lG---Ad-~v--i~y~~~~----~~~~v~~~t~g~ 210 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLE-LLKELG---AD-HV--INYREED----FVEQVRELTGGK 210 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHH-HHHhcC---CC-EE--EcCCccc----HHHHHHHHcCCC
Confidence 88999999999999999999999996 6666666555555 444442 22 22 2233332 334443322 2
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
.+|+++...|..
T Consensus 211 gvDvv~D~vG~~ 222 (326)
T COG0604 211 GVDVVLDTVGGD 222 (326)
T ss_pred CceEEEECCCHH
Confidence 699999998864
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=56.59 Aligned_cols=38 Identities=32% Similarity=0.425 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
..+++++++|.|+ ||+|.++++.|+..|..++.+++++
T Consensus 131 ~~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4688899999955 8999999999999998889999987
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.013 Score=55.99 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|..+++.+...|+ +|+.+++++++.+.+.+.+. .. .++ |..+.+.+.+.+.+.. .++
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~~~~~~k~~~~~~~lG---a~-~vi--~~~~~~~~~~~i~~~~--~~g 228 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGSAGSSQKVDLLKNKLG---FD-EAF--NYKEEPDLDAALKRYF--PEG 228 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhcC---CC-EEE--ECCCcccHHHHHHHHC--CCC
Confidence 588999999999999999999888996 88888888777665543443 12 222 3222222333333332 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 229 vD~v~d~vG~ 238 (348)
T PLN03154 229 IDIYFDNVGG 238 (348)
T ss_pred cEEEEECCCH
Confidence 9999998873
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.026 Score=53.31 Aligned_cols=119 Identities=17% Similarity=0.131 Sum_probs=73.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++.+.|+|+ |++|.+++..|+..|. ..+++++++.+.++-...++.... .++... . .+.+.
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~-~--~~~~~---------- 70 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY-A--GDYSD---------- 70 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE-e--CCHHH----------
Confidence 4668999998 9999999999999984 479999998877665555554321 122222 1 12211
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+..-|+||..||....+ ..+. ...++.|.. +++.+.+.+.+.. +++.++++|-....
T Consensus 71 -~~~adivIitag~~~k~----g~~R---~dll~~N~~----i~~~i~~~i~~~~-~~~~vivvsNP~d~ 127 (315)
T PRK00066 71 -CKDADLVVITAGAPQKP----GETR---LDLVEKNLK----IFKSIVGEVMASG-FDGIFLVASNPVDI 127 (315)
T ss_pred -hCCCCEEEEecCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhC-CCeEEEEccCcHHH
Confidence 23689999999985332 2233 233444444 4444455544433 24788888865533
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.015 Score=58.47 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=56.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+++++|.|+ |.+|..++++|...|+..|+++.|+.+.++...+.+.. ..+.+ ...++....+.
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g--~~i~~-----~~~~dl~~al~------ 328 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPD--VEIIY-----KPLDEMLACAA------ 328 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCC--CceEe-----ecHhhHHHHHh------
Confidence 388999999999 99999999999999976899999998888777665531 11221 12223223332
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||.+.+..
T Consensus 329 -~aDVVIsAT~s~ 340 (519)
T PLN00203 329 -EADVVFTSTSSE 340 (519)
T ss_pred -cCCEEEEccCCC
Confidence 689999988754
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.023 Score=55.23 Aligned_cols=83 Identities=19% Similarity=0.233 Sum_probs=52.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.++|||||++..+|..+++.|.+.| ..|++++.+........+.. +....+...-.+.+...+.+.++.++. +
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G-~~Vi~~d~~~~~~~~~s~~~----d~~~~~p~p~~d~~~~~~~L~~i~~~~-~ 76 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAG-HTVILADSLKYPLSRFSRAV----DGFYTIPSPRWDPDAYIQALLSIVQRE-N 76 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCC-CEEEEEeCCchHHHHHHHhh----hheEEeCCCCCCHHHHHHHHHHHHHHc-C
Confidence 45799999999999999999999999 59999988864433222222 122222112234433333344444443 5
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|+||-...
T Consensus 77 id~vIP~~e 85 (389)
T PRK06849 77 IDLLIPTCE 85 (389)
T ss_pred CCEEEECCh
Confidence 899998776
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.016 Score=56.84 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=55.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+++++|.|+ |.+|..+++.|...|+..|++++|+..+++...+.+.. ..+. .++..+.+.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~-----~~i~-----~~~l~~~l~------ 239 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG-----EAVK-----FEDLEEYLA------ 239 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-----eEee-----HHHHHHHHh------
Confidence 588999999997 99999999999999966899999998777666555431 1221 123333333
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||.+.|..
T Consensus 240 -~aDvVi~aT~s~ 251 (417)
T TIGR01035 240 -EADIVISSTGAP 251 (417)
T ss_pred -hCCEEEECCCCC
Confidence 589999998754
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.027 Score=52.16 Aligned_cols=81 Identities=21% Similarity=0.315 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.++++++|+|+++++|.++++.+...|+ .|+++.++....+.+ +.+. .. ...|..+.+....+.. ... .+
T Consensus 138 ~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~g---~~---~~~~~~~~~~~~~~~~-~~~-~~ 207 (323)
T cd05276 138 KAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEAC-RALG---AD---VAINYRTEDFAEEVKE-ATG-GR 207 (323)
T ss_pred CCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHcC---CC---EEEeCCchhHHHHHHH-HhC-CC
Confidence 3578999999999999999999999996 899999987665554 3332 11 1234443333333222 222 24
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|+++|.
T Consensus 208 ~~d~vi~~~g~ 218 (323)
T cd05276 208 GVDVILDMVGG 218 (323)
T ss_pred CeEEEEECCch
Confidence 69999999884
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.011 Score=55.13 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=37.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 85 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~ 85 (358)
.+++|++++|.|. |++|+++++.|...|+ +|+++.|+..+.+.
T Consensus 147 ~~l~gk~v~IiG~-G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 147 FTIHGSNVMVLGF-GRTGMTIARTFSALGA-RVFVGARSSADLAR 189 (287)
T ss_pred CCCCCCEEEEEcC-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence 4789999999999 7799999999999996 99999999765444
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.055 Score=48.82 Aligned_cols=79 Identities=24% Similarity=0.301 Sum_probs=52.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..+.+++|+|+++ +|.++++.+...| .+|+++++++...+.. +.+. .. .+ .|..+.+....+. ....+
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~-~~~g---~~-~~--~~~~~~~~~~~~~---~~~~~ 200 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAG-ARVIVTDRSDEKLELA-KELG---AD-HV--IDYKEEDLEEELR---LTGGG 200 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcC-CeEEEEcCCHHHHHHH-HHhC---Cc-ee--ccCCcCCHHHHHH---HhcCC
Confidence 4578999999999 9999999999999 4999999987655544 2221 11 11 2333333333332 22345
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|+++|.
T Consensus 201 ~~d~vi~~~~~ 211 (271)
T cd05188 201 GADVVIDAVGG 211 (271)
T ss_pred CCCEEEECCCC
Confidence 79999998874
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.019 Score=54.37 Aligned_cols=79 Identities=14% Similarity=0.187 Sum_probs=52.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.++||+||+|++|.++++.+...|+..|+.+++++++.+.+.+.+.. . .++ |..+. ++.+.+.++.. +++|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa---~-~vi--~~~~~-~~~~~i~~~~~--~gvd 226 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF---D-AAI--NYKTD-NVAERLRELCP--EGVD 226 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC---c-EEE--ECCCC-CHHHHHHHHCC--CCce
Confidence 79999999999999999888888954788988887766655554432 1 122 22221 22223333322 4699
Q ss_pred EEEEcccc
Q 018331 126 VLVCNAAV 133 (358)
Q Consensus 126 ~lv~~ag~ 133 (358)
+++.+.|.
T Consensus 227 ~vid~~g~ 234 (345)
T cd08293 227 VYFDNVGG 234 (345)
T ss_pred EEEECCCc
Confidence 99998773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.027 Score=51.14 Aligned_cols=40 Identities=30% Similarity=0.511 Sum_probs=34.8
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+...|++++++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 26 ~Q~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 26 GQEKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHHHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 345789999999998 9999999999999998788888764
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.015 Score=58.11 Aligned_cols=47 Identities=32% Similarity=0.388 Sum_probs=40.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
++++++++|+|+ ||+|++++..|++.|+ .|++++|+.++.+...+.+
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~-~V~i~~R~~~~~~~la~~~ 375 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGA-ELLIFNRTKAHAEALASRC 375 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh
Confidence 578899999996 7999999999999996 9999999987776665543
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.084 Score=52.93 Aligned_cols=112 Identities=17% Similarity=0.240 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-------------HH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-------------DS 109 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-------------~~ 109 (358)
..+.+++|+|+ |.+|...+..+...|| .|++++++++.++.+.+ +. . .++..|..+. +.
T Consensus 163 ~pg~kVlViGa-G~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aes-lG---A--~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGA-GVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVES-MG---A--EFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC---C--eEEEeccccccccccchhhhcchhH
Confidence 45788999986 7899999999999998 89999999877665543 32 2 2233333221 11
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.+...+.+.+..+..|++|.++|.-..+. +..+++..+..|+. +++||.++..
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~a--------------------P~lit~~~v~~mkp----GgvIVdvg~~ 287 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPA--------------------PKLITAEMVASMKP----GSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccC--------------------cchHHHHHHHhcCC----CCEEEEEccC
Confidence 11112222233357999999999753321 22223445555554 4799999764
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.019 Score=54.08 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|..+++.+...|+ +|+.+++++++.+.+ +.+. .. .++ |..+.+.+.+.+.... .++
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~-~~lG---a~-~vi--~~~~~~~~~~~~~~~~--~~g 207 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYL-KKLG---FD-VAF--NYKTVKSLEETLKKAS--PDG 207 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHcC---CC-EEE--eccccccHHHHHHHhC--CCC
Confidence 578999999999999999998888996 899899887665555 3332 22 222 2222223333333332 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 208 vdvv~d~~G~ 217 (325)
T TIGR02825 208 YDCYFDNVGG 217 (325)
T ss_pred eEEEEECCCH
Confidence 9999988774
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.48 Score=43.47 Aligned_cols=241 Identities=16% Similarity=0.093 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEE-ec-----ChHHH----HHHHHHh-cCCCCceEEEEecCCCHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMA-CR-----DFLKA----ERAAKSA-GMAKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~-~r-----~~~~~----~~~~~~~-~~~~~~i~~~~~Dl~~~~~i~ 111 (358)
.-|++||.|+|+|.|.+.-...+= .||.++=+. -| .+... ....++. +..+--...+..|.-+.+--+
T Consensus 40 gPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~kGlyAksingDaFS~e~k~ 119 (398)
T COG3007 40 GPKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQKGLYAKSINGDAFSDEMKQ 119 (398)
T ss_pred CCceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhcCceeeecccchhhHHHHH
Confidence 456899999999999875444331 445443322 11 11110 1112222 222333566778999998888
Q ss_pred HHHHHHHhcCCCccEEEEcccc-cCCCC--------------------------------CCCCCCHHhHHhhhhhhhhH
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAV-YLPTA--------------------------------KEPTFTAEGFELSVGTNHLG 158 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~-~~~~~--------------------------------~~~~~~~~~~~~~~~vN~~~ 158 (358)
..++.+++.+|.+|.||..-+. ..... .+...+.++++.+..|-=--
T Consensus 120 kvIe~Ik~~~g~vDlvvYSlAsp~Rk~pktgev~~SalKpIg~a~~~~~ldt~kd~i~e~~lepAseqEI~~Tv~VMGGe 199 (398)
T COG3007 120 KVIEAIKQDFGKVDLVVYSLASPRRKHPKTGEVFRSALKPIGEAVSGRTLDTEKDVIIEATLEPASEQEIADTVAVMGGE 199 (398)
T ss_pred HHHHHHHHhhccccEEEEeccCccccCCCcchhhHhhhcchhhhccccccccccceeeeeecccccHHHHHHHHHhhCcc
Confidence 9999999999999999887432 21100 01123444555554432222
Q ss_pred HH-HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhH
Q 018331 159 HF-LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSK 237 (358)
Q Consensus 159 ~~-~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 237 (358)
-+ +.+.+++..-.-.. +.+-|-.|-+...+. .+..-...-|.+|
T Consensus 200 DWq~WidaLl~advlae--g~kTiAfsYiG~~iT---------------------------------~~IYw~GtiG~AK 244 (398)
T COG3007 200 DWQMWIDALLEADVLAE--GAKTIAFSYIGEKIT---------------------------------HPIYWDGTIGRAK 244 (398)
T ss_pred hHHHHHHHHHhcccccc--CceEEEEEecCCccc---------------------------------cceeeccccchhh
Confidence 22 23344443221111 356666665543320 0111122468899
Q ss_pred HHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCC
Q 018331 238 VCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKS 317 (358)
Q Consensus 238 ~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~ 317 (358)
.-|..-+..+...+.+.-|=..++|+-..| |. .....|........+.+... .--+-+.|.+.+-.|.++.-. +
T Consensus 245 ~DLd~~~~~inekLa~~gG~A~vsVlKavV-Tq--ASsaIP~~plYla~lfkvMK-ekg~HEgcIeQi~rlfse~ly--~ 318 (398)
T COG3007 245 KDLDQKSLAINEKLAALGGGARVSVLKAVV-TQ--ASSAIPMMPLYLAILFKVMK-EKGTHEGCIEQIDRLFSEKLY--S 318 (398)
T ss_pred hcHHHHHHHHHHHHHhcCCCeeeeehHHHH-hh--hhhccccccHHHHHHHHHHH-HcCcchhHHHHHHHHHHHHhh--C
Confidence 999998888888884444533445555444 52 33333433333333333222 123668888888888876433 3
Q ss_pred ceeeecCC
Q 018331 318 GVYWSWNK 325 (358)
Q Consensus 318 G~~~~~d~ 325 (358)
|+-+..|.
T Consensus 319 g~~~~~D~ 326 (398)
T COG3007 319 GSKIQLDD 326 (398)
T ss_pred CCCCCcCc
Confidence 55555554
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.023 Score=54.15 Aligned_cols=42 Identities=36% Similarity=0.572 Sum_probs=36.6
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
..+...|+..+++|.|+ ||+|..+++.|+..|..+|.+++++
T Consensus 16 ~~~Q~~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 16 EEGQQKLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHHHHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34455789999999998 8999999999999997789999986
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0095 Score=54.41 Aligned_cols=75 Identities=19% Similarity=0.287 Sum_probs=54.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++||+|||+- |+.++..|.++| +.|++..++....+.... .....+..+..+.+++.+++.+ .++|+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g-~~v~~s~~t~~~~~~~~~------~g~~~v~~g~l~~~~l~~~l~~-----~~i~~ 68 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQG-IEILVTVTTSEGKHLYPI------HQALTVHTGALDPQELREFLKR-----HSIDI 68 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCC-CeEEEEEccCCccccccc------cCCceEEECCCCHHHHHHHHHh-----cCCCE
Confidence 6999999998 999999999999 699999998754333211 1122344666677776666653 26999
Q ss_pred EEEccccc
Q 018331 127 LVCNAAVY 134 (358)
Q Consensus 127 lv~~ag~~ 134 (358)
||..+..+
T Consensus 69 VIDAtHPf 76 (256)
T TIGR00715 69 LVDATHPF 76 (256)
T ss_pred EEEcCCHH
Confidence 99998654
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.067 Score=45.91 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCc---eEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~---i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|-.|+..|. ++..++.++ .+|+.+++++...+.+.+.+...+.+ +.++.+|+.+. +.+
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~---------~~~- 88 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP---------FRG- 88 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc---------ccc-
Confidence 56788888877665 555556667 49999999987777666655433222 78888887442 111
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhH---HHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLG---HFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~---~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+.+|+|+.|..+.... .... ..+.+...+..+..+ .-.+++.+.+.|+.. |.++++.+
T Consensus 89 -~~~d~vi~n~p~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g----G~~~~~~~ 149 (188)
T PRK14968 89 -DKFDVILFNPPYLPTE-EEEE-WDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG----GRILLLQS 149 (188)
T ss_pred -cCceEEEECCCcCCCC-chhh-hhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC----eEEEEEEc
Confidence 2699999998875432 1111 111222222222222 223566666777653 67666644
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.027 Score=52.83 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=50.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|+||++++|.++++.+...|+ .|+.+.++++..+.. +.+ +.. .++ |.. +..+ .+.+ ...
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~---~~~-~~~--~~~---~~~~---~~~~-~~~ 226 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKIL-KEL---GAD-YVI--DGS---KFSE---DVKK-LGG 226 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHH-HHc---CCc-EEE--ecH---HHHH---HHHh-ccC
Confidence 477999999999999999999999995 888888887555444 222 111 222 221 1222 2222 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++++|+|.
T Consensus 227 ~d~v~~~~g~ 236 (332)
T cd08259 227 ADVVIELVGS 236 (332)
T ss_pred CCEEEECCCh
Confidence 9999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.024 Score=54.20 Aligned_cols=80 Identities=21% Similarity=0.276 Sum_probs=53.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-C
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-G 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~ 121 (358)
-+|+.+||.||+||+|.+.++.....|+ ..+++.++.++.+ ..+++. . -...|..+.+ .++++.+. .
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~-l~k~lG----A--d~vvdy~~~~----~~e~~kk~~~ 223 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLE-LVKKLG----A--DEVVDYKDEN----VVELIKKYTG 223 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHH-HHHHcC----C--cEeecCCCHH----HHHHHHhhcC
Confidence 4578999999999999999999999994 4444455444443 334443 1 2225666633 23333332 5
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
+++|+|+-|.|..
T Consensus 224 ~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 224 KGVDVVLDCVGGS 236 (347)
T ss_pred CCccEEEECCCCC
Confidence 6899999999974
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.087 Score=49.39 Aligned_cols=80 Identities=13% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|.|+++++|.++++.+...|+ .|+.+.++..+.+.+.+.+. .. .++ |..+.+..+. +.+.. . +.
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~~g---~~-~~~--~~~~~~~~~~-v~~~~-~-~~ 214 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWLVEELG---FD-AAI--NYKTPDLAEA-LKEAA-P-DG 214 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhhcC---Cc-eEE--ecCChhHHHH-HHHhc-c-CC
Confidence 578999999999999999999999996 88888888766554433232 11 222 2223322222 22222 1 46
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 215 ~d~vi~~~g~ 224 (329)
T cd05288 215 IDVYFDNVGG 224 (329)
T ss_pred ceEEEEcchH
Confidence 9999998773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.037 Score=49.12 Aligned_cols=39 Identities=38% Similarity=0.447 Sum_probs=34.5
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
...|+.++++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 23 q~~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 34688899999995 8999999999999998789998887
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.032 Score=54.07 Aligned_cols=77 Identities=29% Similarity=0.406 Sum_probs=61.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|+++++||.|| |-+|.-++++|+++|...|+++.|+..+++...+++. ++....+++.....
T Consensus 174 ~~L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~----------~~~~~l~el~~~l~----- 237 (414)
T COG0373 174 GSLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG----------AEAVALEELLEALA----- 237 (414)
T ss_pred cccccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC----------CeeecHHHHHHhhh-----
Confidence 3589999999997 6799999999999998799999999999888887764 33334444444444
Q ss_pred CCCccEEEEcccccC
Q 018331 121 GRPLDVLVCNAAVYL 135 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~ 135 (358)
..|+||.+.|...
T Consensus 238 --~~DvVissTsa~~ 250 (414)
T COG0373 238 --EADVVISSTSAPH 250 (414)
T ss_pred --hCCEEEEecCCCc
Confidence 6899999988753
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.036 Score=53.20 Aligned_cols=86 Identities=27% Similarity=0.276 Sum_probs=57.1
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCCc--
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKEN-- 96 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~-- 96 (358)
.+...|++.+++|.|+ ||+|.++++.|+..|..++.+++.+. .+.+.+.+.+.+.+..
T Consensus 21 ~~q~~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~ 99 (355)
T PRK05597 21 QGQQSLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVK 99 (355)
T ss_pred HHHHHHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcE
Confidence 3445789999999988 89999999999999988899988752 3445555555444333
Q ss_pred eEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 97 i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
+..+...++. +...++++ ..|+||.+..
T Consensus 100 v~~~~~~i~~-~~~~~~~~-------~~DvVvd~~d 127 (355)
T PRK05597 100 VTVSVRRLTW-SNALDELR-------DADVILDGSD 127 (355)
T ss_pred EEEEEeecCH-HHHHHHHh-------CCCEEEECCC
Confidence 4444444442 22223322 5677777764
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.038 Score=48.90 Aligned_cols=204 Identities=12% Similarity=0.041 Sum_probs=121.3
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+.|++--+.++-|+.+..|.++++.-...| ..|..+.|+..+ .. ++.....+.|+..|.-...-.+....
T Consensus 46 ~~~dve~e~tlvlggnpfsgs~vlk~A~~vv-~svgilsen~~k--~~---l~sw~~~vswh~gnsfssn~~k~~l~--- 116 (283)
T KOG4288|consen 46 DKQDVEVEWTLVLGGNPFSGSEVLKNATNVV-HSVGILSENENK--QT---LSSWPTYVSWHRGNSFSSNPNKLKLS--- 116 (283)
T ss_pred chhhhhHHHHhhhcCCCcchHHHHHHHHhhc-eeeeEeecccCc--ch---hhCCCcccchhhccccccCcchhhhc---
Confidence 3345665678999999999999999999999 588888888542 22 22334677888888765543332222
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
.+-.++-++|.+.. ...+.++|=.......+++..... .++|+||-..... |
T Consensus 117 ----g~t~v~e~~ggfgn-----------~~~m~~ing~ani~a~kaa~~~gv------~~fvyISa~d~~~-------~ 168 (283)
T KOG4288|consen 117 ----GPTFVYEMMGGFGN-----------IILMDRINGTANINAVKAAAKAGV------PRFVYISAHDFGL-------P 168 (283)
T ss_pred ----CCcccHHHhcCccc-----------hHHHHHhccHhhHHHHHHHHHcCC------ceEEEEEhhhcCC-------C
Confidence 45556666665422 233444566666666677654433 5999998765421 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-h
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-I 277 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~ 277 (358)
++- ..+|=.+|.+-+ .|+....+.+-..++||++......... .
T Consensus 169 ---------------------------~~i-~rGY~~gKR~AE-------~Ell~~~~~rgiilRPGFiyg~R~v~g~~~ 213 (283)
T KOG4288|consen 169 ---------------------------PLI-PRGYIEGKREAE-------AELLKKFRFRGIILRPGFIYGTRNVGGIKS 213 (283)
T ss_pred ---------------------------Ccc-chhhhccchHHH-------HHHHHhcCCCceeeccceeecccccCcccc
Confidence 111 125767776522 2222333567778899999886222111 1
Q ss_pred hhhhhhc----------chhHHh-----hhcCccchhHHhhhhhhhhcCCCC
Q 018331 278 PLFRLLF----------PPFQKY-----ITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 278 ~~~~~~~----------~~~~~~-----~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
++..... ++..+. .....+..+++|.+.+..+++|+-
T Consensus 214 pL~~vg~pl~~~~~~a~k~~~kLp~lg~l~~ppvnve~VA~aal~ai~dp~f 265 (283)
T KOG4288|consen 214 PLHTVGEPLEMVLKFALKPLNKLPLLGPLLAPPVNVESVALAALKAIEDPDF 265 (283)
T ss_pred cHHhhhhhHHHHHHhhhchhhcCcccccccCCCcCHHHHHHHHHHhccCCCc
Confidence 1111110 111111 112347899999999999999864
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.044 Score=52.12 Aligned_cols=78 Identities=15% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|++++|+|+ |++|...++.+...|+.+|+++++++++.+.+. ++. .. .+ .|..+. ++.+ +.+..+
T Consensus 168 ~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lG---a~-~v--i~~~~~-~~~~----~~~~~g 234 (343)
T PRK09880 168 LQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMG---AD-KL--VNPQND-DLDH----YKAEKG 234 (343)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcC---Cc-EE--ecCCcc-cHHH----HhccCC
Confidence 46889999986 999999999888899757888999887766443 343 22 12 233332 2222 222234
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.++|.
T Consensus 235 ~~D~vid~~G~ 245 (343)
T PRK09880 235 YFDVSFEVSGH 245 (343)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.046 Score=49.05 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=56.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-------------------hHHHHHHHHHhcCCCC--ceEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMAKE--NYTI 99 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-------------------~~~~~~~~~~~~~~~~--~i~~ 99 (358)
..|++++++|.| .||+|.++++.|+..|..++.+++.+ ..+.+.+.+.+.+.+. ++..
T Consensus 17 ~~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 17 EKLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence 468888999998 68999999999999998788887543 1344455555554443 3455
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCccEEEEcccc
Q 018331 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133 (358)
Q Consensus 100 ~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~ 133 (358)
+..+++ .+.+.++++ ..|+||.+...
T Consensus 96 ~~~~i~-~~~~~~~~~-------~~DvVi~~~d~ 121 (228)
T cd00757 96 YNERLD-AENAEELIA-------GYDLVLDCTDN 121 (228)
T ss_pred ecceeC-HHHHHHHHh-------CCCEEEEcCCC
Confidence 555553 233333332 58888887663
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.1 Score=52.25 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC-------------CHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-------------SLDS 109 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~-------------~~~~ 109 (358)
..+.+++|.|+ |.+|...+..+...|+ .|++++++...++...+ +. ..++..|.. +.+.
T Consensus 162 vp~akVlViGa-G~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~-lG-----a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS-MG-----AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC-----CeEEeccccccccccccceeecCHHH
Confidence 45678999996 9999999999999997 79899998876554433 32 234444432 1233
Q ss_pred HHHHHHHHHhcCCCccEEEEccccc
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~ 134 (358)
.+...+.+.+.....|++|+++-+-
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~Talip 258 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIP 258 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccC
Confidence 3333334444456799999999543
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.032 Score=60.28 Aligned_cols=78 Identities=24% Similarity=0.364 Sum_probs=62.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCc-------------EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKW-------------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSV 110 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~-------------~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i 110 (358)
+.|.++|.|+ |.||+.++..|++.+.. .|.+++++.+.++.+.+.+ .++..+++|++|.+++
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----ENAEAVQLDVSDSESL 642 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----CCCceEEeecCCHHHH
Confidence 4678999997 99999999999986522 3888899887777666544 2567899999999887
Q ss_pred HHHHHHHHhcCCCccEEEEcccc
Q 018331 111 RQFVDTFRRSGRPLDVLVCNAAV 133 (358)
Q Consensus 111 ~~~~~~~~~~~~~iD~lv~~ag~ 133 (358)
.++++ .+|+||++...
T Consensus 643 ~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 643 LKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred HHhhc-------CCCEEEECCCc
Confidence 77666 58999999865
|
|
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.0093 Score=43.16 Aligned_cols=35 Identities=34% Similarity=0.454 Sum_probs=21.7
Q ss_pred CC-CeEEEEcCCCchHHHHHHHHH-hCCCcEEEEEecC
Q 018331 44 RK-GSVIITGASSGLGLATAKALA-ETGKWHIIMACRD 79 (358)
Q Consensus 44 ~~-k~~lITGas~gIG~aia~~La-~~Ga~~Vi~~~r~ 79 (358)
+| |++||+|+|+|.|++....++ ..|| ..+.+...
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA-~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGA-DTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC---EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCC-CEEEEeec
Confidence 44 789999999999999444444 6676 55555543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.024 Score=52.61 Aligned_cols=38 Identities=18% Similarity=0.231 Sum_probs=34.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.+++||.++|.|+++-+|+.++..|+++|+ +|.++.|.
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~ 192 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSR 192 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 468999999999999999999999999998 99888773
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.043 Score=52.02 Aligned_cols=118 Identities=13% Similarity=0.009 Sum_probs=67.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-c-----EEEEEecChH--HHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK-W-----HIIMACRDFL--KAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~-----~Vi~~~r~~~--~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~ 114 (358)
.+.|+|++|.+|..++..|+..|. . .+++++.++. +++-...++.... .++.+. . .
T Consensus 6 KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~-~--~--------- 73 (326)
T PRK05442 6 RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT-D--D--------- 73 (326)
T ss_pred EEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe-c--C---------
Confidence 689999999999999999998773 3 6999998542 2222222221110 011111 0 0
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
-.+.+..-|+||.+||....+ ..+. ...+..| ..+++.+.+.+.+...+++.++++|-..-.
T Consensus 74 --~y~~~~daDiVVitaG~~~k~----g~tR---~dll~~N----a~i~~~i~~~i~~~~~~~~iiivvsNPvDv 135 (326)
T PRK05442 74 --PNVAFKDADVALLVGARPRGP----GMER---KDLLEAN----GAIFTAQGKALNEVAARDVKVLVVGNPANT 135 (326)
T ss_pred --hHHHhCCCCEEEEeCCCCCCC----CCcH---HHHHHHH----HHHHHHHHHHHHHhCCCCeEEEEeCCchHH
Confidence 112234789999999975221 2233 3334444 445666666666533224788888865543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.028 Score=52.55 Aligned_cols=42 Identities=19% Similarity=0.352 Sum_probs=36.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~ 84 (358)
.++.+++++|.|. |++|+.++..|...|+ .|.+++|+..+.+
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~ 189 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKALGA-NVTVGARKSAHLA 189 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHH
Confidence 4678999999997 7899999999999997 9999999975543
|
|
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.081 Score=48.84 Aligned_cols=104 Identities=15% Similarity=0.223 Sum_probs=72.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-C
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~-~ 122 (358)
.|.|++|++|+|.+|.-+.+.---+|+ +|+.+.-++++.+-+.+++.- -...|-... ++.+.+.+.. .
T Consensus 150 ~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGf------D~~idyk~~----d~~~~L~~a~P~ 218 (340)
T COG2130 150 AGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGF------DAGIDYKAE----DFAQALKEACPK 218 (340)
T ss_pred CCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCC------ceeeecCcc----cHHHHHHHHCCC
Confidence 489999999999999887776667886 999999999888877766541 112333333 2333333332 4
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.||+.+-|.|.- +..++++.|+.. +||+.++-++++
T Consensus 219 GIDvyfeNVGg~---------------------------v~DAv~~~ln~~----aRi~~CG~IS~Y 254 (340)
T COG2130 219 GIDVYFENVGGE---------------------------VLDAVLPLLNLF----ARIPVCGAISQY 254 (340)
T ss_pred CeEEEEEcCCch---------------------------HHHHHHHhhccc----cceeeeeehhhc
Confidence 799999999863 123455666664 699998887776
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.12 Score=48.59 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=73.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC----C-CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 48 VIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----K-ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~----~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+.|.|+ |.+|..+|..|+..|. ..+++++.+.+.++-....+... . .++.+...| .+. +
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~---y~~-----------~ 66 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD---YDD-----------C 66 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC---HHH-----------h
Confidence 678888 9999999999999884 57999999876665555554331 1 133333222 211 2
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..-|+||.+||....+ ..+.+ -...+.. ...+++...+.+.+.. +++.++.+|-..-.
T Consensus 67 ~~aDivvitaG~~~kp----g~tr~-R~dll~~----N~~I~~~i~~~i~~~~-p~~i~ivvsNPvDv 124 (307)
T cd05290 67 ADADIIVITAGPSIDP----GNTDD-RLDLAQT----NAKIIREIMGNITKVT-KEAVIILITNPLDI 124 (307)
T ss_pred CCCCEEEECCCCCCCC----CCCch-HHHHHHH----HHHHHHHHHHHHHHhC-CCeEEEEecCcHHH
Confidence 3689999999985332 12311 1222333 4456667777766655 35788888776544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.093 Score=49.67 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=68.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-c-----EEEEEecCh--HHHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK-W-----HIIMACRDF--LKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~-----~Vi~~~r~~--~~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~ 114 (358)
.+.|+|++|.+|.+++..|+..|. . .+++++.+. ++++-....+.... .+..+. . .+.
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~--~~~------- 74 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT-T--DPE------- 74 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe-c--ChH-------
Confidence 589999999999999999998883 4 699999864 22333333332211 011111 0 111
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+.+..-|+||.+||....+ ..+. ...+..|.. +++.+.+.+.+...+++.++++|-..-.
T Consensus 75 ----~~~~daDvVVitAG~~~k~----g~tR---~dll~~Na~----i~~~i~~~i~~~~~~~~iiivvsNPvDv 134 (323)
T TIGR01759 75 ----EAFKDVDAALLVGAFPRKP----GMER---ADLLSKNGK----IFKEQGKALNKVAKKDVKVLVVGNPANT 134 (323)
T ss_pred ----HHhCCCCEEEEeCCCCCCC----CCcH---HHHHHHHHH----HHHHHHHHHHhhCCCCeEEEEeCCcHHH
Confidence 1123689999999975221 2233 334445544 4455555545443224788888765433
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=51.05 Aligned_cols=118 Identities=13% Similarity=0.028 Sum_probs=73.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-------C-CcEEEEEecChHHHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAET-------G-KWHIIMACRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-------G-a~~Vi~~~r~~~~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~ 114 (358)
.+.|+|++|.+|.+++..|+.. | +..+++++++.+.++-...++.... .++.+. . .+.+.
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~--~~ye~----- 173 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-I--DPYEV----- 173 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-c--CCHHH-----
Confidence 6899999999999999999988 5 2479999999887776665554321 122111 1 12221
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+..-|++|..||....+ ..+. ...++.|. .+++...+.+.+...+++.||++|-..-.
T Consensus 174 ------~kdaDiVVitAG~prkp----G~tR---~dLl~~N~----~I~k~i~~~I~~~a~p~~ivIVVsNPvDv 231 (444)
T PLN00112 174 ------FQDAEWALLIGAKPRGP----GMER---ADLLDING----QIFAEQGKALNEVASRNVKVIVVGNPCNT 231 (444)
T ss_pred ------hCcCCEEEECCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHHhcCCCeEEEEcCCcHHH
Confidence 33689999999975321 2232 33444454 45555555555521125788888865533
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.044 Score=54.21 Aligned_cols=72 Identities=19% Similarity=0.226 Sum_probs=50.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.|+ |.+|+++++.|.+.| ..|++++++++..+...+. ..+.++.+|.++...+.++ ...+.|.
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g-~~v~vid~~~~~~~~~~~~-----~~~~~~~gd~~~~~~l~~~------~~~~a~~ 68 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGEN-NDVTVIDTDEERLRRLQDR-----LDVRTVVGNGSSPDVLREA------GAEDADL 68 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHhh-----cCEEEEEeCCCCHHHHHHc------CCCcCCE
Confidence 5888887 999999999999999 5999999998776655432 2356667777766554443 0124555
Q ss_pred EEEcc
Q 018331 127 LVCNA 131 (358)
Q Consensus 127 lv~~a 131 (358)
+|.+.
T Consensus 69 vi~~~ 73 (453)
T PRK09496 69 LIAVT 73 (453)
T ss_pred EEEec
Confidence 55554
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.076 Score=49.26 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+++++|+|+++++|.+++..+...|+ .|+++.+++...+.+ +.+. .+ .+ .+....+....+.. ... .++
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~--~~~~~~~~~~~~~~-~~~-~~~ 208 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAAC-EALG---AD-IA--INYREEDFVEVVKA-ETG-GKG 208 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHcC---Cc-EE--EecCchhHHHHHHH-HcC-CCC
Confidence 578999999999999999999999996 888888887665543 3332 11 11 23333333233222 211 236
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|+++|
T Consensus 209 ~d~~i~~~~ 217 (325)
T TIGR02824 209 VDVILDIVG 217 (325)
T ss_pred eEEEEECCc
Confidence 999999987
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=51.01 Aligned_cols=41 Identities=37% Similarity=0.534 Sum_probs=34.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
++.|.||+|.+|.++++.|.+.| ..|++++|+.+.......
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G-~~V~v~~r~~~~~~~~a~ 42 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKG-FEVIVTGRDPKKGKEVAK 42 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCC-CEEEEEECChHHHHHHHH
Confidence 58999999999999999999999 599999998766544433
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.068 Score=45.85 Aligned_cols=32 Identities=38% Similarity=0.407 Sum_probs=28.0
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
++|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 677774 99999999999999987899998874
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.086 Score=46.25 Aligned_cols=39 Identities=33% Similarity=0.429 Sum_probs=33.3
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
...|++.+++|.|++| +|.++++.|+..|..++.+++.+
T Consensus 14 q~~L~~s~VlviG~gg-lGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 14 QNKLRSAKVLIIGAGA-LGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HHHHhhCcEEEECCCH-HHHHHHHHHHHcCCCEEEEEECC
Confidence 3567888999997765 99999999999998889888765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.019 Score=56.84 Aligned_cols=79 Identities=23% Similarity=0.238 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecC
Q 018331 41 KTLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 41 ~~l~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl 104 (358)
++|+||++|||+| ||-.|+++|+.+..+|| .|.++.-.-. +. ....+.++ ++
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA-~VtlI~Gp~~--------~~-~p~~v~~i--~V 319 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGA-EVTLISGPVD--------LA-DPQGVKVI--HV 319 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCC-cEEEEeCCcC--------CC-CCCCceEE--Ee
Confidence 4799999999987 46789999999999997 6666653211 11 12234444 34
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
.+..++.+.+. +.++ .|++|++|+...
T Consensus 320 ~ta~eM~~av~---~~~~-~Di~I~aAAVaD 346 (475)
T PRK13982 320 ESARQMLAAVE---AALP-ADIAIFAAAVAD 346 (475)
T ss_pred cCHHHHHHHHH---hhCC-CCEEEEeccccc
Confidence 45555555444 4343 699999999864
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.062 Score=50.37 Aligned_cols=79 Identities=13% Similarity=0.152 Sum_probs=52.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|..+++.+...|+ .|+.+++++++.+.+.+ +. .. .++ |..+.+..+. +.+.. .++
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~~l~~-~G---a~-~vi--~~~~~~~~~~-v~~~~--~~g 211 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVAWLKE-LG---FD-AVF--NYKTVSLEEA-LKEAA--PDG 211 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cC---CC-EEE--eCCCccHHHH-HHHHC--CCC
Confidence 578999999999999999999999996 89999988766655533 32 22 222 3333222222 22222 146
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 212 vd~vld~~g~ 221 (329)
T cd08294 212 IDCYFDNVGG 221 (329)
T ss_pred cEEEEECCCH
Confidence 9999988773
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.05 Score=49.92 Aligned_cols=121 Identities=18% Similarity=0.175 Sum_probs=69.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--C-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 48 VIITGASSGLGLATAKALAETG--K-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~G--a-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+.|+||+|.+|..++..|+..| . ..|++++.++++++....+++...... ....++..++..+.+ ...
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~--~~~~i~~~~d~~~~~-------~~a 71 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL--ADIKVSITDDPYEAF-------KDA 71 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc--cCcEEEECCchHHHh-------CCC
Confidence 4689998999999999999888 2 489999998877666655554321111 011111111112222 368
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
|+||..+|....+ ..+. ...+..| .-+.+.+.+.+.+.. +++.++++|-....
T Consensus 72 DiVv~t~~~~~~~----g~~r---~~~~~~n----~~i~~~i~~~i~~~~-p~a~~i~~tNP~d~ 124 (263)
T cd00650 72 DVVIITAGVGRKP----GMGR---LDLLKRN----VPIVKEIGDNIEKYS-PDAWIIVVSNPVDI 124 (263)
T ss_pred CEEEECCCCCCCc----CCCH---HHHHHHH----HHHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 9999999875332 1121 1222333 344444444444433 35788888765543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.072 Score=46.67 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=33.4
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+...|++++++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 15 ~Q~~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 15 AQKRLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHHHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECC
Confidence 335688889999975 5699999999999998789888754
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.037 Score=47.20 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=34.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.++.||+++|.|++.-+|..+++.|.++|+ +|.++.|+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~ 77 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSK 77 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECC
Confidence 479999999999976789999999999997 89888886
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.11 Score=49.13 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=52.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|++++|+|+. |+|...++.....|+ +|++++|++++++.+.+.- .. ++ .|.++.+..+.+-+ .+
T Consensus 167 G~~V~I~G~G-GlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lG----Ad-~~--i~~~~~~~~~~~~~-------~~ 230 (339)
T COG1064 167 GKWVAVVGAG-GLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLG----AD-HV--INSSDSDALEAVKE-------IA 230 (339)
T ss_pred CCEEEEECCc-HHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhC----Cc-EE--EEcCCchhhHHhHh-------hC
Confidence 8999999999 999999988888996 9999999998877665431 12 22 33334444333322 28
Q ss_pred cEEEEccc
Q 018331 125 DVLVCNAA 132 (358)
Q Consensus 125 D~lv~~ag 132 (358)
|++|.+++
T Consensus 231 d~ii~tv~ 238 (339)
T COG1064 231 DAIIDTVG 238 (339)
T ss_pred cEEEECCC
Confidence 99999988
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.23 Score=46.79 Aligned_cols=117 Identities=15% Similarity=0.099 Sum_probs=71.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|+|+ |.+|..++..|+..|. ..+++++.+.+.++-...++.... ....+... .+.+. +.
T Consensus 5 Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~dy~~-----------~~ 70 (312)
T cd05293 5 KVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KDYSV-----------TA 70 (312)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CCHHH-----------hC
Confidence 6899996 9999999999998884 579999998766655555543321 11122211 12221 23
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..|+||.+||....+ ..+.. ..+..| .-+++.+.+.+.+.. +++.++++|.....
T Consensus 71 ~adivvitaG~~~k~----g~~R~---dll~~N----~~i~~~~~~~i~~~~-p~~~vivvsNP~d~ 125 (312)
T cd05293 71 NSKVVIVTAGARQNE----GESRL---DLVQRN----VDIFKGIIPKLVKYS-PNAILLVVSNPVDI 125 (312)
T ss_pred CCCEEEECCCCCCCC----CCCHH---HHHHHH----HHHHHHHHHHHHHhC-CCcEEEEccChHHH
Confidence 689999999975331 22332 234444 445555555555543 35788888876544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.095 Score=43.20 Aligned_cols=32 Identities=34% Similarity=0.445 Sum_probs=27.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3788886 9999999999999997788888754
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.046 Score=51.45 Aligned_cols=118 Identities=19% Similarity=0.093 Sum_probs=67.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecCh--HHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~--~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++.|+|++|.+|..++..|+..|. ..|++++|+. ++++.....+.. .+... .+..+.. ...
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~---~i~~~~d--~~~------- 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDA---EIKISSD--LSD------- 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCc---EEEECCC--HHH-------
Confidence 689999999999999999999984 3599999954 333322222211 11111 1111111 111
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+...|++|.++|....+ ..+. ...++.|+.-...+.+.+.++. +.+.+|++++....
T Consensus 70 -l~~aDiViitag~p~~~----~~~r---~dl~~~n~~i~~~~~~~i~~~~-----~~~~viv~~npvd~ 126 (309)
T cd05294 70 -VAGSDIVIITAGVPRKE----GMSR---LDLAKKNAKIVKKYAKQIAEFA-----PDTKILVVTNPVDV 126 (309)
T ss_pred -hCCCCEEEEecCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHHC-----CCeEEEEeCCchHH
Confidence 23689999999975321 1232 2334445544444444444332 24788888886644
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.16 Score=48.56 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=72.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+.+.|+|+ |.+|.+++..|+..|. ..+++++.+.+.++-...++.... ....+. .+ .+.+. +
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~-~dy~~-----------~ 103 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-AS-TDYAV-----------T 103 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eC-CCHHH-----------h
Confidence 58999996 9999999999998884 579999998766655555543321 122221 11 12111 2
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..-|+||.+||....+ ..+.. ..+..| ..+++.+.+.+.+.. +++.++++|-....
T Consensus 104 ~daDiVVitAG~~~k~----g~tR~---dll~~N----~~I~~~i~~~I~~~~-p~~ivivvtNPvdv 159 (350)
T PLN02602 104 AGSDLCIVTAGARQIP----GESRL---NLLQRN----VALFRKIIPELAKYS-PDTILLIVSNPVDV 159 (350)
T ss_pred CCCCEEEECCCCCCCc----CCCHH---HHHHHH----HHHHHHHHHHHHHHC-CCeEEEEecCchHH
Confidence 3689999999985332 22332 233334 445555555555443 35788888865543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.083 Score=49.95 Aligned_cols=121 Identities=16% Similarity=0.085 Sum_probs=70.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+.+.+.|+|| |.+|..++..++..|...|++++.+.+.++-....+... +....+ .. -++.+ .
T Consensus 3 ~~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~-~~d~~----~----- 70 (319)
T PTZ00117 3 VKRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LG-TNNYE----D----- 70 (319)
T ss_pred CCCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEE-Ee-CCCHH----H-----
Confidence 35668999997 999999999999988337999999875543222222111 111111 11 11221 1
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+..-|+||.++|..... ..+. ...+..|. .+.+.+.+.+.+.. +++.++++|-....
T Consensus 71 --l~~ADiVVitag~~~~~----g~~r---~dll~~n~----~i~~~i~~~i~~~~-p~a~vivvsNP~di 127 (319)
T PTZ00117 71 --IKDSDVVVITAGVQRKE----EMTR---EDLLTING----KIMKSVAESVKKYC-PNAFVICVTNPLDC 127 (319)
T ss_pred --hCCCCEEEECCCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecChHHH
Confidence 12679999999875321 1222 33455555 45555555555443 34678888765533
|
|
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.095 Score=48.66 Aligned_cols=80 Identities=25% Similarity=0.277 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++++++|+|+++++|.+++..+...|+ .|+.++++..+.+.. .... . -.++ |.........+ ..... ...
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~-~~~g---~-~~~~--~~~~~~~~~~~-~~~~~-~~~ 213 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDAL-LALG---A-AHVI--VTDEEDLVAEV-LRITG-GKG 213 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHcC---C-CEEE--ecCCccHHHHH-HHHhC-CCC
Confidence 578999999999999999999999995 888888887665554 3221 1 1222 22222222222 22221 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++++++|.
T Consensus 214 ~d~vi~~~~~ 223 (328)
T cd08268 214 VDVVFDPVGG 223 (328)
T ss_pred ceEEEECCch
Confidence 9999998874
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=45.81 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+++||.+||.|| |.+|...++.|++.|+ .|.++.++.
T Consensus 6 l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga-~V~VIs~~~ 43 (202)
T PRK06718 6 IDLSNKRVVIVGG-GKVAGRRAITLLKYGA-HIVVISPEL 43 (202)
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEcCCC
Confidence 4799999999998 9999999999999996 888887764
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.15 Score=49.32 Aligned_cols=118 Identities=13% Similarity=0.016 Sum_probs=69.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc------EEEEE--ecChHHHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKW------HIIMA--CRDFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~------~Vi~~--~r~~~~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~ 114 (358)
.+.|+|++|.+|.+++..|+..|.. .++++ +++.+.++-...++.... .++.+. . .+.+
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~-~--~~y~------ 116 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG-I--DPYE------ 116 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe-c--CCHH------
Confidence 6999999999999999999988842 23344 777777665555554321 112111 1 1111
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.+..-|++|..||....+ ..+. ...+..|+. +++...+.+.+...+.++||++|-..-.
T Consensus 117 -----~~kdaDIVVitAG~prkp----g~tR---~dll~~N~~----I~k~i~~~I~~~a~~~~iviVVsNPvDv 175 (387)
T TIGR01757 117 -----VFEDADWALLIGAKPRGP----GMER---ADLLDINGQ----IFADQGKALNAVASKNCKVLVVGNPCNT 175 (387)
T ss_pred -----HhCCCCEEEECCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhCCCCeEEEEcCCcHHH
Confidence 123689999999975221 2232 334444544 4555555555532235788888865533
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=50.22 Aligned_cols=41 Identities=29% Similarity=0.488 Sum_probs=35.3
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.+...|++.+++|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 34 ~~q~~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 34 EQQERLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred HHHHHhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4456788999999976 7999999999999998789998876
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=48.06 Aligned_cols=119 Identities=14% Similarity=0.073 Sum_probs=68.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++.|+|++|.+|.++|..|+..|. ..+++++.+ .++-....+........+..+. ..+++ .+.+..-|
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~--~~~~~-------y~~~~daD 70 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYL--GPEEL-------KKALKGAD 70 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEec--CCCch-------HHhcCCCC
Confidence 588999999999999999998883 579999987 3222222222111111111110 00111 12234789
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
++|.+||....+ ..+ -...++.|..-...+.+.+.++ . +++.++++|-..-
T Consensus 71 ivvitaG~~~k~----g~t---R~dll~~N~~i~~~i~~~i~~~----~-p~a~vivvtNPvD 121 (310)
T cd01337 71 VVVIPAGVPRKP----GMT---RDDLFNINAGIVRDLATAVAKA----C-PKALILIISNPVN 121 (310)
T ss_pred EEEEeCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHh----C-CCeEEEEccCchh
Confidence 999999985322 223 2344556665555555555444 2 2478888887763
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.11 Score=45.55 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=34.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
..|+.++++|.|+ ||+|..+++.|+..|..++++++++
T Consensus 17 ~~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 17 QKLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3688889999998 7899999999999997689999887
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.077 Score=47.55 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=34.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCc--EEEEEecC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKW--HIIMACRD 79 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~--~Vi~~~r~ 79 (358)
++++++++|.|+ |+.|++++..|++.|+. +|++++|+
T Consensus 22 ~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 22 KIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 688999999998 99999999999999987 79999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.093 Score=49.31 Aligned_cols=31 Identities=35% Similarity=0.430 Sum_probs=27.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+||.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 788886 9999999999999998889998765
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=49.18 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |+||...++.+...|+.+|+.+++++++.+.+ +.+. .. .+ .|..+ .+.+.+.+.++.. +
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a-~~~G---a~-~~--i~~~~~~~~~~~~v~~~~~--~ 254 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELA-KKLG---AT-DC--VNPNDYDKPIQEVIVEITD--G 254 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHhC---CC-eE--EcccccchhHHHHHHHHhC--C
Confidence 4789999975 99999999988889965799999988776655 3332 11 12 23332 2223333333332 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.++|.
T Consensus 255 g~d~vid~~G~ 265 (368)
T TIGR02818 255 GVDYSFECIGN 265 (368)
T ss_pred CCCEEEECCCC
Confidence 69999999884
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.08 Score=39.64 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=32.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 78 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r 78 (358)
.++.+++++|.|+ |+.|+.++..|.+.|...|.+.+|
T Consensus 19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4588999999999 999999999999995458888877
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.1 Score=49.19 Aligned_cols=118 Identities=15% Similarity=0.118 Sum_probs=67.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 48 VIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+.|+|++|.+|.+++..|+..|. ..+++++++. ++-....+........+....-. ++ ..+.+..-|+
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~~~~~i~~~~~~--~~-------~~~~~~daDi 70 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIPTAASVKGFSGE--EG-------LENALKGADV 70 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCCcCceEEEecCC--Cc-------hHHHcCCCCE
Confidence 78999999999999999998883 5799999875 11111111111111111110000 00 1122447899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
||.+||....+ ..+ -...+..|+. +++...+.+.+.. +++.|+++|-..-
T Consensus 71 vvitaG~~~~~----g~~---R~dll~~N~~----I~~~i~~~i~~~~-p~~iiivvsNPvD 120 (312)
T TIGR01772 71 VVIPAGVPRKP----GMT---RDDLFNVNAG----IVKDLVAAVAESC-PKAMILVITNPVN 120 (312)
T ss_pred EEEeCCCCCCC----Ccc---HHHHHHHhHH----HHHHHHHHHHHhC-CCeEEEEecCchh
Confidence 99999975322 122 2334555665 5555555555443 3578888887764
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.098 Score=46.86 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=56.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|. |.|-+|+.+|+.|.+.| +.|++++++++..+..... ....+++.+|-++.+.++++- ....|+
T Consensus 2 ~iiIi-G~G~vG~~va~~L~~~g-~~Vv~Id~d~~~~~~~~~~----~~~~~~v~gd~t~~~~L~~ag------i~~aD~ 69 (225)
T COG0569 2 KIIII-GAGRVGRSVARELSEEG-HNVVLIDRDEERVEEFLAD----ELDTHVVIGDATDEDVLEEAG------IDDADA 69 (225)
T ss_pred EEEEE-CCcHHHHHHHHHHHhCC-CceEEEEcCHHHHHHHhhh----hcceEEEEecCCCHHHHHhcC------CCcCCE
Confidence 34454 45789999999999999 6999999998777664331 135789999999998776651 126788
Q ss_pred EEEcccc
Q 018331 127 LVCNAAV 133 (358)
Q Consensus 127 lv~~ag~ 133 (358)
+|...|-
T Consensus 70 vva~t~~ 76 (225)
T COG0569 70 VVAATGN 76 (225)
T ss_pred EEEeeCC
Confidence 8887764
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.13 Score=41.97 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCC--CCceEEEEec
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIMHLD 103 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~--~~~i~~~~~D 103 (358)
.++++|.| .|++|.++++.|+..|..++.+++.+. .+.+.+.+.+.+. ..++..+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 35677776 479999999999999988899987531 2344444555433 3456666667
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 104 l~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
+ +.+...++++ ..|+||.+..
T Consensus 81 ~-~~~~~~~~~~-------~~d~vi~~~d 101 (135)
T PF00899_consen 81 I-DEENIEELLK-------DYDIVIDCVD 101 (135)
T ss_dssp C-SHHHHHHHHH-------TSSEEEEESS
T ss_pred c-cccccccccc-------CCCEEEEecC
Confidence 7 3344455443 5788888754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.18 Score=48.44 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~~ 122 (358)
.|.++||.|+ |+||...++.+...|+..|+.+++++++.+.+ +.+. .. .+ .|..+. +++.+.+.++.. +
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~lG---a~-~~--i~~~~~~~~~~~~v~~~~~--~ 255 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKFG---AT-DC--VNPKDHDKPIQQVLVEMTD--G 255 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcC---CC-EE--EcccccchHHHHHHHHHhC--C
Confidence 4889999975 99999999999999965799999988776654 3343 22 22 233332 234444444432 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.+.|.
T Consensus 256 g~d~vid~~g~ 266 (368)
T cd08300 256 GVDYTFECIGN 266 (368)
T ss_pred CCcEEEECCCC
Confidence 69999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.26 Score=46.15 Aligned_cols=115 Identities=21% Similarity=0.168 Sum_probs=69.6
Q ss_pred EEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCC---ceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 49 IITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 49 lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~---~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|.|+ |++|..++..|+..|. ..+++++++.+.++.....+..... ...+... .+.+ . +..-
T Consensus 2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~~~----~-------l~~a 67 (300)
T cd00300 2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GDYA----D-------AADA 67 (300)
T ss_pred EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CCHH----H-------hCCC
Confidence 57776 7899999999999883 4799999988776665555543211 1122111 1111 1 2368
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
|++|.++|....+ ..+. ...+.. ...+++.+.+.+.+.. +++.++++|.....
T Consensus 68 DiVIitag~p~~~----~~~R---~~l~~~----n~~i~~~~~~~i~~~~-p~~~viv~sNP~d~ 120 (300)
T cd00300 68 DIVVITAGAPRKP----GETR---LDLINR----NAPILRSVITNLKKYG-PDAIILVVSNPVDI 120 (300)
T ss_pred CEEEEcCCCCCCC----CCCH---HHHHHH----HHHHHHHHHHHHHHhC-CCeEEEEccChHHH
Confidence 9999999975321 1232 222333 4445555555555544 35889988876544
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.15 Score=40.08 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=52.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEE
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVL 127 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~l 127 (358)
++|.|. +.+|+.+++.|.+.+ ..|++++++++..+...+. .+.++.+|.++.+.++++-- .+.+.+
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~-~~vvvid~d~~~~~~~~~~------~~~~i~gd~~~~~~l~~a~i------~~a~~v 66 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGG-IDVVVIDRDPERVEELREE------GVEVIYGDATDPEVLERAGI------EKADAV 66 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT------TSEEEES-TTSHHHHHHTTG------GCESEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCC-CEEEEEECCcHHHHHHHhc------ccccccccchhhhHHhhcCc------cccCEE
Confidence 466666 589999999999977 6999999998776665443 36799999999998777511 256777
Q ss_pred EEccc
Q 018331 128 VCNAA 132 (358)
Q Consensus 128 v~~ag 132 (358)
|...+
T Consensus 67 v~~~~ 71 (116)
T PF02254_consen 67 VILTD 71 (116)
T ss_dssp EEESS
T ss_pred EEccC
Confidence 77665
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.16 Score=49.12 Aligned_cols=81 Identities=21% Similarity=0.170 Sum_probs=53.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~ 121 (358)
-.|.++||.|+ |+||..+++.+...|+..|+++++++++.+.+. .+. .. .++ |..+. +.+.+.+.++..
T Consensus 197 ~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~G---a~-~~i--~~~~~~~~~~~~v~~~~~-- 266 (381)
T PLN02740 197 QAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EMG---IT-DFI--NPKDSDKPVHERIREMTG-- 266 (381)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-HcC---Cc-EEE--ecccccchHHHHHHHHhC--
Confidence 34889999985 999999999998999756999999877766553 332 22 222 33332 123333333322
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+.+|++|.++|.
T Consensus 267 ~g~dvvid~~G~ 278 (381)
T PLN02740 267 GGVDYSFECAGN 278 (381)
T ss_pred CCCCEEEECCCC
Confidence 269999999984
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.3 Score=48.34 Aligned_cols=77 Identities=13% Similarity=0.232 Sum_probs=50.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+|+++|+|+. ++|.++++.|+++|+ .|.+.+.+.... ....++.....+.++..... .. ..
T Consensus 2 ~~~~~~~~v~G~g-~~G~~~a~~l~~~g~-~v~~~d~~~~~~--~~~~l~~~~~gi~~~~g~~~-~~----~~------- 65 (445)
T PRK04308 2 TFQNKKILVAGLG-GTGISMIAYLRKNGA-EVAAYDAELKPE--RVAQIGKMFDGLVFYTGRLK-DA----LD------- 65 (445)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCCCch--hHHHHhhccCCcEEEeCCCC-HH----HH-------
Confidence 4678999999985 999999999999995 888888764321 11123221123444433222 11 11
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|.||..+|+.
T Consensus 66 ~~~d~vv~spgi~ 78 (445)
T PRK04308 66 NGFDILALSPGIS 78 (445)
T ss_pred hCCCEEEECCCCC
Confidence 2579999999986
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.19 Score=40.52 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=53.5
Q ss_pred eEEEEcCCCchHHHHHHHHHh-CCCcE-EEEEecCh----------------------HHHHHHHHHhcCCCCceEEEEe
Q 018331 47 SVIITGASSGLGLATAKALAE-TGKWH-IIMACRDF----------------------LKAERAAKSAGMAKENYTIMHL 102 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~-~Ga~~-Vi~~~r~~----------------------~~~~~~~~~~~~~~~~i~~~~~ 102 (358)
+++|.|++|-.|+.+++.+.+ .+ .. +..++|+. ..++...+. .. +-.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~-~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-----~D---VvI 72 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPG-FELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-----AD---VVI 72 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTT-EEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH------S---EEE
T ss_pred EEEEECCCCHHHHHHHHHHHhcCC-cEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc-----CC---EEE
Confidence 589999999999999999999 55 45 55566665 122222221 11 558
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEEccccc
Q 018331 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 103 Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~ 134 (358)
|++.++.+...++.+.+. ++.+|+-..|..
T Consensus 73 DfT~p~~~~~~~~~~~~~--g~~~ViGTTG~~ 102 (124)
T PF01113_consen 73 DFTNPDAVYDNLEYALKH--GVPLVIGTTGFS 102 (124)
T ss_dssp EES-HHHHHHHHHHHHHH--T-EEEEE-SSSH
T ss_pred EcCChHHhHHHHHHHHhC--CCCEEEECCCCC
Confidence 999999999999988776 678888888863
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=49.40 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=32.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.|++.+|+|.|+ ||+|..++..|++.|..++++++.+
T Consensus 173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCC
Confidence 588889999986 7899999999999998789988754
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.11 Score=42.44 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=44.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
+++.+++.|.. .|.++|..|++.| ..|++++.++...+.+.+. .+.++..|+.+.+
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G-~~ViaIDi~~~aV~~a~~~------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESG-FDVIVIDINEKAVEKAKKL------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCC-CEEEEEECCHHHHHHHHHh------CCeEEECcCCCCC
Confidence 45789999987 8889999999999 5999999998766655443 3578888887654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=49.79 Aligned_cols=78 Identities=22% Similarity=0.245 Sum_probs=59.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+..+.++|.|+ |.+|+.+++.|.+.| ..|++++++++..+...+.. ..+.++.+|.++.+.++++- ..
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~-~~v~vid~~~~~~~~~~~~~----~~~~~i~gd~~~~~~L~~~~------~~ 296 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEG-YSVKLIERDPERAEELAEEL----PNTLVLHGDGTDQELLEEEG------ID 296 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHC----CCCeEEECCCCCHHHHHhcC------Cc
Confidence 45788999999 999999999999999 59999999987666554432 34678899999987755431 23
Q ss_pred CccEEEEccc
Q 018331 123 PLDVLVCNAA 132 (358)
Q Consensus 123 ~iD~lv~~ag 132 (358)
+.|.+|.+.+
T Consensus 297 ~a~~vi~~~~ 306 (453)
T PRK09496 297 EADAFIALTN 306 (453)
T ss_pred cCCEEEECCC
Confidence 5777775544
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.22 Score=47.09 Aligned_cols=80 Identities=20% Similarity=0.250 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|.+++|+|+ |++|..+++.+...|+..|+++++++++.+.+ +++. .. .+ .|..+.+ .+.+ .++.. ..
T Consensus 162 ~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~g---a~-~~--i~~~~~~-~~~~-~~~~~-~~ 230 (339)
T cd08239 162 SGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KALG---AD-FV--INSGQDD-VQEI-RELTS-GA 230 (339)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhC---CC-EE--EcCCcch-HHHH-HHHhC-CC
Confidence 34889999986 99999999999999974488898887766544 3343 11 22 3333333 3332 22211 23
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.+.|.
T Consensus 231 ~~d~vid~~g~ 241 (339)
T cd08239 231 GADVAIECSGN 241 (339)
T ss_pred CCCEEEECCCC
Confidence 69999998874
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.2 Score=46.70 Aligned_cols=80 Identities=19% Similarity=0.214 Sum_probs=53.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|+|+++++|.+++..+...|+ .|+.++++.+..+.+ +.+. .. .+ .|..+.+..+.+. +.. ...+
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~--~~~~~~~~~~~~~-~~~-~~~~ 211 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALV-RALG---AD-VA--VDYTRPDWPDQVR-EAL-GGGG 211 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHcC---CC-EE--EecCCccHHHHHH-HHc-CCCC
Confidence 477999999999999999999999995 899999887665544 3332 11 12 2333333333322 111 1236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++++.|.
T Consensus 212 ~d~vl~~~g~ 221 (324)
T cd08244 212 VTVVLDGVGG 221 (324)
T ss_pred ceEEEECCCh
Confidence 9999998773
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.25 Score=48.26 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC--CcEEEEEecChHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETG--KWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~G--a~~Vi~~~r~~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.|.+++|.||+|++|...++.+...| +..|+++++++.+.+.+.+.+.... ........|..+.+++.+.+.++..
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t~ 254 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELTG 254 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHhC
Confidence 46799999999999999888776654 4479999999887776554322110 0111122343332233333333322
Q ss_pred cCCCccEEEEcccc
Q 018331 120 SGRPLDVLVCNAAV 133 (358)
Q Consensus 120 ~~~~iD~lv~~ag~ 133 (358)
...+|++|.+.|.
T Consensus 255 -g~g~D~vid~~g~ 267 (410)
T cd08238 255 -GQGFDDVFVFVPV 267 (410)
T ss_pred -CCCCCEEEEcCCC
Confidence 2368999988763
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.24 Score=47.88 Aligned_cols=81 Identities=23% Similarity=0.256 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~ 121 (358)
..|.++||.|+ |+||..+++.+...|+..|+++++++.+.+.+ +++. .. .+ .|..+. +.+.+.+.++..
T Consensus 192 ~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~lG---a~-~~--i~~~~~~~~~~~~v~~~~~-- 261 (378)
T PLN02827 192 SKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTFG---VT-DF--INPNDLSEPIQQVIKRMTG-- 261 (378)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHcC---Cc-EE--EcccccchHHHHHHHHHhC--
Confidence 35889999985 99999999988889975688888887665544 3332 11 12 233321 233333443332
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+.+|++|.++|.
T Consensus 262 ~g~d~vid~~G~ 273 (378)
T PLN02827 262 GGADYSFECVGD 273 (378)
T ss_pred CCCCEEEECCCC
Confidence 369999999884
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.27 Score=44.49 Aligned_cols=41 Identities=32% Similarity=0.493 Sum_probs=34.6
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
+...|++.+++|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 18 ~q~~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 18 GQEALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHHHHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 345688888999875 79999999999999988899988763
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.3 Score=46.53 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~ 86 (358)
.|.+++|.|+ |++|..+++.+...|+ .|+++++++++.+.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 4889999999 9999999999999997 899999988776654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.69 Score=46.26 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=50.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++++++|.|+ |++|.++|..|+++| ..|.++++++. ......+.++.. .+.++..+-..
T Consensus 12 ~~~~~~~v~viG~-G~~G~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~l~~~--gv~~~~~~~~~------------- 74 (480)
T PRK01438 12 SDWQGLRVVVAGL-GVSGFAAADALLELG-ARVTVVDDGDDERHRALAAILEAL--GATVRLGPGPT------------- 74 (480)
T ss_pred cCcCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCchhhhHHHHHHHHHc--CCEEEECCCcc-------------
Confidence 3578999999997 789999999999999 48988886543 223333444333 23333322111
Q ss_pred cCCCccEEEEccccc
Q 018331 120 SGRPLDVLVCNAAVY 134 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~ 134 (358)
.....|.||...|+.
T Consensus 75 ~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 75 LPEDTDLVVTSPGWR 89 (480)
T ss_pred ccCCCCEEEECCCcC
Confidence 012589999999975
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.3 Score=43.88 Aligned_cols=41 Identities=32% Similarity=0.484 Sum_probs=34.7
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
+...|++.+++|.|+ ||+|.++++.|+..|..++.+++.+.
T Consensus 21 ~q~~L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ 61 (231)
T PRK08328 21 GQEKLKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQT 61 (231)
T ss_pred HHHHHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 345688889999975 69999999999999988899988764
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.18 Score=49.45 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=35.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~ 84 (358)
.+.|++++|.|. |.||+.+++.|...|+ +|+++++++....
T Consensus 209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~ 249 (425)
T PRK05476 209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGA-RVIVTEVDPICAL 249 (425)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCchhhH
Confidence 368999999996 7999999999999997 8999999875543
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.23 Score=42.76 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=63.2
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
...+++||+++=-|+..|+ ++...+-.|++.|+.++.+.+.++...+...+..+++.++.+|+++..
T Consensus 40 ~~g~l~g~~V~DlG~GTG~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~---------- 106 (198)
T COG2263 40 LRGDLEGKTVLDLGAGTGI---LAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR---------- 106 (198)
T ss_pred HcCCcCCCEEEEcCCCcCH---HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----------
Confidence 3468999999999988775 333344568889999999998888887777767788999999998653
Q ss_pred hcCCCccEEEEccccc
Q 018331 119 RSGRPLDVLVCNAAVY 134 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~ 134 (358)
+++|.+|+|.-..
T Consensus 107 ---~~~dtvimNPPFG 119 (198)
T COG2263 107 ---GKFDTVIMNPPFG 119 (198)
T ss_pred ---CccceEEECCCCc
Confidence 4788999998553
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.32 Score=46.16 Aligned_cols=42 Identities=21% Similarity=0.202 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~ 86 (358)
.|++++|+| .|++|..+++.+...|+..|+++++++++.+.+
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 578999997 599999999999999975578888887766643
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.32 Score=46.69 Aligned_cols=81 Identities=21% Similarity=0.192 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~ 121 (358)
-.|.++||.|+ |++|...++.+...|+..|+++++++++.+.+ +.+. .. .++ |..+. +++.+.+.++..
T Consensus 186 ~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~G---a~-~~i--~~~~~~~~~~~~v~~~~~-- 255 (369)
T cd08301 186 KKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKFG---VT-EFV--NPKDHDKPVQEVIAEMTG-- 255 (369)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---Cc-eEE--cccccchhHHHHHHHHhC--
Confidence 35889999985 99999999988889964799999987766554 3332 11 222 22221 233333443332
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+.+|+++.+.|.
T Consensus 256 ~~~d~vid~~G~ 267 (369)
T cd08301 256 GGVDYSFECTGN 267 (369)
T ss_pred CCCCEEEECCCC
Confidence 269999998873
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.21 Score=46.29 Aligned_cols=41 Identities=29% Similarity=0.341 Sum_probs=35.1
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
....|++.+++|.|+ ||+|..+++.|+..|..++.+++.+.
T Consensus 21 ~Q~kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 21 EQQRLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHHHHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345788999999976 69999999999999988899988763
|
|
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.34 Score=44.91 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=51.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|.+++|.|+++++|.++++.+...|+ .|+.+.+++++.+.. ..+. .. .++. + .. +..+.+.+. .+
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~~~-~--~~-~~~~~i~~~---~~ 207 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALL-KELG---AD-EVVI-D--DG-AIAEQLRAA---PG 207 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HhcC---Cc-EEEe-c--Cc-cHHHHHHHh---CC
Confidence 3578999999999999999999999996 888888887655444 3332 11 2221 2 11 112222222 24
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|+++.+.|.
T Consensus 208 ~~d~vl~~~~~ 218 (320)
T cd08243 208 GFDKVLELVGT 218 (320)
T ss_pred CceEEEECCCh
Confidence 69999998773
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.25 Score=46.13 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+++++|.++++.+...|+ .|+++.++.++.+...+ + +.. .++ +..+.+ ..+.+.+... ..+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~-~---g~~-~~~--~~~~~~-~~~~i~~~~~-~~~ 208 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRA-L---GIG-PVV--STEQPG-WQDKVREAAG-GAP 208 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHh-c---CCC-EEE--cCCCch-HHHHHHHHhC-CCC
Confidence 578999999999999999999999997 88888887665544433 2 121 222 222222 2222232222 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 209 ~d~v~d~~g~ 218 (324)
T cd08292 209 ISVALDSVGG 218 (324)
T ss_pred CcEEEECCCC
Confidence 9999998774
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.28 Score=45.97 Aligned_cols=80 Identities=23% Similarity=0.258 Sum_probs=51.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.++.+++|.|+++++|.++++.....|+ .|+.+.++.+..+.+ +.+. .. .++ |..+.+ ..+.+.... .+
T Consensus 138 ~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~v~--~~~~~~-~~~~~~~~~--~~ 206 (329)
T cd08250 138 KSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFL-KSLG---CD-RPI--NYKTED-LGEVLKKEY--PK 206 (329)
T ss_pred CCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHH-HHcC---Cc-eEE--eCCCcc-HHHHHHHhc--CC
Confidence 3578999999999999999999999996 888888887665544 3332 11 222 222222 222232222 24
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|+++++.|.
T Consensus 207 ~vd~v~~~~g~ 217 (329)
T cd08250 207 GVDVVYESVGG 217 (329)
T ss_pred CCeEEEECCcH
Confidence 69999988763
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.18 Score=47.84 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=36.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.++++|++||.|+ |-+|..++++|.++|+..|+++.|+.
T Consensus 170 ~~l~~k~vLvIGa-Gem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 170 QKSKKASLLFIGY-SEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CCccCCEEEEEcc-cHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 5799999999999 99999999999999976899999986
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.32 Score=46.47 Aligned_cols=80 Identities=26% Similarity=0.297 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||.|+ |++|..+++.+...|+.+|+.+++++.+.+.+ +.+. .. .++ |..+.+..+. +.+... ...
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~-~~~G---a~-~~i--~~~~~~~~~~-i~~~~~-~~g 245 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWA-REFG---AT-HTV--NSSGTDPVEA-IRALTG-GFG 245 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---Cc-eEE--cCCCcCHHHH-HHHHhC-CCC
Confidence 4889999985 99999999988889975698999987766655 3332 11 222 3333222222 222221 225
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 246 ~d~vid~~g~ 255 (358)
T TIGR03451 246 ADVVIDAVGR 255 (358)
T ss_pred CCEEEECCCC
Confidence 8999998874
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.12 Score=47.58 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
+++++|.|+ ||-+++++..|++.|+.+|.++.|+.++.+...+.+
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~ 166 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELY 166 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHh
Confidence 467888885 999999999999999878999999988877766544
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.25 Score=43.56 Aligned_cols=74 Identities=12% Similarity=0.146 Sum_probs=50.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
-+++||.+||.|| |.+|..-++.|++.|| .|.+++.+.. .+....+ ..++.++.-+....+
T Consensus 5 l~l~gk~vlVvGg-G~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~-----~~~i~~~~~~~~~~d----------- 66 (205)
T TIGR01470 5 ANLEGRAVLVVGG-GDVALRKARLLLKAGA-QLRVIAEELESELTLLAE-----QGGITWLARCFDADI----------- 66 (205)
T ss_pred EEcCCCeEEEECc-CHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHH-----cCCEEEEeCCCCHHH-----------
Confidence 4689999999986 6789999999999997 8888877643 2222221 136777776665211
Q ss_pred cCCCccEEEEcccc
Q 018331 120 SGRPLDVLVCNAAV 133 (358)
Q Consensus 120 ~~~~iD~lv~~ag~ 133 (358)
+...|.||.+.+.
T Consensus 67 -l~~~~lVi~at~d 79 (205)
T TIGR01470 67 -LEGAFLVIAATDD 79 (205)
T ss_pred -hCCcEEEEECCCC
Confidence 1246777766554
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.17 Score=40.95 Aligned_cols=87 Identities=23% Similarity=0.304 Sum_probs=51.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCC--------CCceEEEEecCCCHHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMA--------KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~--------~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
-++-|.|+ |.+|.++++.|.+.| +.|..+ .|+....+.....+... -.+..++-+-+.|. .+..++++
T Consensus 11 l~I~iIGa-GrVG~~La~aL~~ag-~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~ 87 (127)
T PF10727_consen 11 LKIGIIGA-GRVGTALARALARAG-HEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ 87 (127)
T ss_dssp -EEEEECT-SCCCCHHHHHHHHTT-SEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH
T ss_pred cEEEEECC-CHHHHHHHHHHHHCC-CeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHH
Confidence 36888888 999999999999999 576665 56665555555444221 11223333333433 77888888
Q ss_pred HHhc--CCCccEEEEcccccC
Q 018331 117 FRRS--GRPLDVLVCNAAVYL 135 (358)
Q Consensus 117 ~~~~--~~~iD~lv~~ag~~~ 135 (358)
+... ..+=.+||||+|...
T Consensus 88 La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 88 LAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHCC--S-TT-EEEES-SS--
T ss_pred HHHhccCCCCcEEEECCCCCh
Confidence 8765 323358999999873
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.26 Score=46.13 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=50.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|.|+++++|.++++.+...|+ .|+.+.+++++.+.. +.+. .. .+ .|..+. . .+.+... . .+.
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~v--~~~~~~-~-~~~~~~~-~-~~~ 213 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYL-KKLG---AK-EV--IPREEL-Q-EESIKPL-E-KQR 213 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHH-HHcC---CC-EE--EcchhH-H-HHHHHhh-c-cCC
Confidence 367999999999999999999999996 899989887665555 3332 11 12 222222 1 1222222 1 235
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|+++.+.|
T Consensus 214 ~d~vld~~g 222 (326)
T cd08289 214 WAGAVDPVG 222 (326)
T ss_pred cCEEEECCc
Confidence 899888876
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.049 Score=42.36 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=32.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+++||.+||+|| |.+|..=++.|++.|| +|.+++.+.
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA-~v~vis~~~ 40 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGA-KVTVISPEI 40 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTB-EEEEEESSE
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEECCch
Confidence 4789999999999 9999999999999997 999988875
|
|
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.31 Score=45.02 Aligned_cols=80 Identities=24% Similarity=0.340 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|+|+++++|.+++..+...|+ .|+.+.++.+..+... .+. .. .++. ....+.... +..... .+.
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~-~~g---~~-~~~~--~~~~~~~~~-i~~~~~-~~~ 208 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALAR-ALG---AD-HVID--YRDPDLRER-VKALTG-GRG 208 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHH-HcC---Cc-eeee--cCCccHHHH-HHHHcC-CCC
Confidence 578999999999999999999999996 8888888876555442 221 11 2222 222222222 222211 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|.++++.|.
T Consensus 209 ~d~v~~~~g~ 218 (323)
T cd08241 209 VDVVYDPVGG 218 (323)
T ss_pred cEEEEECccH
Confidence 9999998874
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.41 Score=45.67 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.++||+| +|++|.++++.+...|+.+|+++++++++.+.+ +.+. .. .++..+-.+...+.+.+.+... ...
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~-~~~g---~~-~vi~~~~~~~~~~~~~i~~~~~-~~~ 249 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA-REFG---AD-ATIDIDELPDPQRRAIVRDITG-GRG 249 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---CC-eEEcCcccccHHHHHHHHHHhC-CCC
Confidence 688999997 599999999999889954788888877665443 3332 11 2222221112222222222222 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 250 ~d~vid~~g~ 259 (361)
T cd08231 250 ADVVIEASGH 259 (361)
T ss_pred CcEEEECCCC
Confidence 9999998874
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.34 Score=46.57 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |+||..+++.+...|+..|+++++++.+.+.+ +.+. .. .+ .|..+.+..+. +.++. .+.
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~G---a~-~~--i~~~~~~~~~~-i~~~~--~~g 259 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-RELG---AT-AT--VNAGDPNAVEQ-VRELT--GGG 259 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHcC---Cc-eE--eCCCchhHHHH-HHHHh--CCC
Confidence 4789999985 89999999988889975688899988776644 3332 11 12 33333322222 22222 126
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 260 ~d~vid~~G~ 269 (371)
T cd08281 260 VDYAFEMAGS 269 (371)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.41 Score=44.02 Aligned_cols=81 Identities=25% Similarity=0.335 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+|.+++|.|+++++|.++++.+...|+ .|+.+.+++...+.+ +.+. .. .++. ..+...... +..... ..
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~~~--~~~~~~~~~-~~~~~~-~~ 204 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA-RAAG---AD-HVIN--YRDEDFVER-VREITG-GR 204 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHH-HHCC---CC-EEEe--CCchhHHHH-HHHHcC-CC
Confidence 3578999999999999999999999996 888888887665544 3332 21 2222 222222222 222211 23
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|.++++.|.
T Consensus 205 ~~d~vl~~~~~ 215 (320)
T cd05286 205 GVDVVYDGVGK 215 (320)
T ss_pred CeeEEEECCCc
Confidence 69999998764
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.5 Score=39.06 Aligned_cols=76 Identities=25% Similarity=0.156 Sum_probs=50.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+.++|-.|+.+|. ++..++..|+.+|+.++.++..++.+.+.+...+.++.++..|+.+. + ..+.+
T Consensus 37 ~~~vLDlGcG~G~---~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~------~-----~~~~f 102 (223)
T PRK14967 37 GRRVLDLCTGSGA---LAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA------V-----EFRPF 102 (223)
T ss_pred CCeEEEecCCHHH---HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh------c-----cCCCe
Confidence 5678888876544 33445555645899999998777766665544444577777776431 1 12479
Q ss_pred cEEEEccccc
Q 018331 125 DVLVCNAAVY 134 (358)
Q Consensus 125 D~lv~~ag~~ 134 (358)
|+||.|..+.
T Consensus 103 D~Vi~npPy~ 112 (223)
T PRK14967 103 DVVVSNPPYV 112 (223)
T ss_pred eEEEECCCCC
Confidence 9999998765
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.41 Score=44.93 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=47.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++++++||+|++|..+++.....|+ .|+.+.+++.+.+.+.+ +. .. .++ |..+.+..+. +.++.. .+++|
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~-~g---~~-~~i--~~~~~~~~~~-v~~~~~-~~~~d 214 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKK-IG---AE-YVL--NSSDPDFLED-LKELIA-KLNAT 214 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cC---Cc-EEE--ECCCccHHHH-HHHHhC-CCCCc
Confidence 4445559999999999988888897 88888888766555433 32 22 222 2222222222 222222 23699
Q ss_pred EEEEccc
Q 018331 126 VLVCNAA 132 (358)
Q Consensus 126 ~lv~~ag 132 (358)
++|.+.|
T Consensus 215 ~vid~~g 221 (324)
T cd08291 215 IFFDAVG 221 (324)
T ss_pred EEEECCC
Confidence 9999887
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.36 Score=43.47 Aligned_cols=31 Identities=32% Similarity=0.409 Sum_probs=26.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
++|.| .||+|.++++.|+..|..++.+++.+
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56676 78999999999999998789888875
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.16 Score=45.26 Aligned_cols=42 Identities=36% Similarity=0.483 Sum_probs=36.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
++.|+||+|.+|.+++..|++.| +.|++.+|++++.+...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~~~~~~~l~~~ 43 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRDLEKAEEAAAK 43 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcCHHHHHHHHHH
Confidence 48899999999999999999999 6999999998776655443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.71 Score=43.39 Aligned_cols=115 Identities=22% Similarity=0.167 Sum_probs=67.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|.|+ |.+|..++..|+.+|. ..|++++++.+..+.....+... .....+.. .+.+ .+.
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~---~d~~-----------~l~ 66 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYA---GDYA-----------DCK 66 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEee---CCHH-----------HhC
Confidence 4788898 8999999999999993 58999999976655333333221 11111111 1211 123
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
..|++|.++|..... ..+. ...+..|. .+++.+.+.+.+.. ++|.+++++....
T Consensus 67 ~aDiViita~~~~~~----~~~r---~dl~~~n~----~i~~~~~~~l~~~~-~~giiiv~tNP~d 120 (308)
T cd05292 67 GADVVVITAGANQKP----GETR---LDLLKRNV----AIFKEIIPQILKYA-PDAILLVVTNPVD 120 (308)
T ss_pred CCCEEEEccCCCCCC----CCCH---HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCcHH
Confidence 789999999975321 1122 23344444 44444444444433 2478888876543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.24 Score=41.86 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=55.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-------CCceEEEEecCCCHHHHHHHHHH--H
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------KENYTIMHLDLASLDSVRQFVDT--F 117 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-------~~~i~~~~~Dl~~~~~i~~~~~~--~ 117 (358)
++-|.|- |-.|..++++|+++| +.|.+.+|++++.+...+.-... -.+..++-.-+.+.+++++++.. +
T Consensus 3 ~Ig~IGl-G~mG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i 80 (163)
T PF03446_consen 3 KIGFIGL-GNMGSAMARNLAKAG-YEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENI 80 (163)
T ss_dssp EEEEE---SHHHHHHHHHHHHTT-TEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTH
T ss_pred EEEEEch-HHHHHHHHHHHHhcC-CeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHH
Confidence 5667776 899999999999999 79999999988877665442100 11335566667888888888876 5
Q ss_pred HhcCCCccEEEEccc
Q 018331 118 RRSGRPLDVLVCNAA 132 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag 132 (358)
.....+=.++|.+.-
T Consensus 81 ~~~l~~g~iiid~sT 95 (163)
T PF03446_consen 81 LAGLRPGKIIIDMST 95 (163)
T ss_dssp GGGS-TTEEEEE-SS
T ss_pred hhccccceEEEecCC
Confidence 554433344554433
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.15 Score=42.06 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=34.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.+++||.++|.|.+.-+|+.++..|.++|+ +|..+.++
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~ga-tV~~~~~~ 61 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGA-TVYSCDWK 61 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeCCC
Confidence 378999999999999999999999999996 88888764
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.7 Score=41.01 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=70.3
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+|+++|=.|+. |+++.+ .+..|+..|+.++.++..++.+.+.+..++ .++.++..|+.+. ..+...
T Consensus 220 ~g~rVLDlfsgtG~~~l~----aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~------l~~~~~ 289 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVS----ALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL------LRTYRD 289 (396)
T ss_pred CCCeEEEeccCCCHHHHH----HHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH------HHHHHh
Confidence 56777766654 555433 234576799999999988887777776543 3688899997532 233332
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
..+++|+||.+.-.+... ..... .-..+.-.+.+.+++.++. +|.++..|+
T Consensus 290 ~~~~fDlVilDPP~f~~~-------k~~l~----~~~~~y~~l~~~a~~lLk~----gG~lv~~sc 340 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVEN-------KSQLM----GACRGYKDINMLAIQLLNP----GGILLTFSC 340 (396)
T ss_pred cCCCCCEEEECCCCCCCC-------hHHHH----HHHHHHHHHHHHHHHHcCC----CeEEEEEeC
Confidence 334799999998765332 11111 1122344455666666654 356665554
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.5 Score=44.29 Aligned_cols=119 Identities=17% Similarity=0.076 Sum_probs=69.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc-EEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~-~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|+|+ |+||.+++..|+.++.- .+++++.+++..+-...++... ...-..+..| .+.++ +.
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~y~~-----------~~ 68 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GDYED-----------LK 68 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CChhh-----------hc
Confidence 5889999 99999999999988854 8999999854444333333211 0000111122 11111 23
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~ 190 (358)
.-|++|..||....+ .++.. ..+..|..- ++.+.+.+.+... ++.++.+|-..-..
T Consensus 69 ~aDiVvitAG~prKp----GmtR~---DLl~~Na~I----~~~i~~~i~~~~~-d~ivlVvtNPvD~~ 124 (313)
T COG0039 69 GADIVVITAGVPRKP----GMTRL---DLLEKNAKI----VKDIAKAIAKYAP-DAIVLVVTNPVDIL 124 (313)
T ss_pred CCCEEEEeCCCCCCC----CCCHH---HHHHhhHHH----HHHHHHHHHhhCC-CeEEEEecCcHHHH
Confidence 689999999986433 23433 334455544 4444444444432 47788887665443
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.21 Score=45.23 Aligned_cols=125 Identities=19% Similarity=0.206 Sum_probs=76.5
Q ss_pred CCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|=.|+. |.+|..++++... + .|.++.+.+...+.+.+.++. ...++.+++.|+.+...... +
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~--a-~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~--------~ 113 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEK--A-KIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV--------F 113 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCC--C-cEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc--------c
Confidence 5566666655 6677777766544 4 899999998777777777655 36789999999876543222 2
Q ss_pred CCccEEEEcccccCCCCCC-CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
..+|+||+|.-++..+... .+...+.-+.+...++.. +++.+...+++ +|++.+|....
T Consensus 114 ~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~---~i~~a~~~lk~----~G~l~~V~r~e 173 (248)
T COG4123 114 ASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLED---LIRAAAKLLKP----GGRLAFVHRPE 173 (248)
T ss_pred cccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHH---HHHHHHHHccC----CCEEEEEecHH
Confidence 2699999999988554320 011112223333333333 33444444444 37999986543
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.17 Score=40.43 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=26.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEE-EEEecCh
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHI-IMACRDF 80 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~V-i~~~r~~ 80 (358)
++.|.||||-+|.++++.|+++-...+ .+++++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc
Confidence 488999999999999999999765454 4455554
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.54 Score=43.24 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
..|++.+++|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 4678888999865 6999999999999997789998875
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.4 Score=37.70 Aligned_cols=77 Identities=22% Similarity=0.270 Sum_probs=55.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+++++|=.|+..|. ++..+++.|. +|+.++.++..++.+.+.+...+.++.++.+|..+.. .+
T Consensus 18 ~~~~~vLdlG~G~G~---~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~------------~~ 81 (179)
T TIGR00537 18 LKPDDVLEIGAGTGL---VAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV------------RG 81 (179)
T ss_pred cCCCeEEEeCCChhH---HHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc------------CC
Confidence 455678888877663 4556667785 9999999988887777766655557788888875421 13
Q ss_pred CccEEEEcccccC
Q 018331 123 PLDVLVCNAAVYL 135 (358)
Q Consensus 123 ~iD~lv~~ag~~~ 135 (358)
.+|+|+.|.-...
T Consensus 82 ~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 82 KFDVILFNPPYLP 94 (179)
T ss_pred cccEEEECCCCCC
Confidence 6899999987653
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.33 Score=50.55 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=57.2
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCC--CC
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KE 95 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~--~~ 95 (358)
......|++.+|+|.| .||+|..+++.|+..|..++.+++.+. .+.+.+.+.+..- ..
T Consensus 35 ~e~Q~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~ 113 (679)
T PRK14851 35 PGEQERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFL 113 (679)
T ss_pred HHHHHHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCC
Confidence 3444678999999998 689999999999999987888887541 2333333444332 33
Q ss_pred ceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 96 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 96 ~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
++..+...++ .+.+.++++ .+|+||.+..
T Consensus 114 ~I~~~~~~i~-~~n~~~~l~-------~~DvVid~~D 142 (679)
T PRK14851 114 EITPFPAGIN-ADNMDAFLD-------GVDVVLDGLD 142 (679)
T ss_pred eEEEEecCCC-hHHHHHHHh-------CCCEEEECCC
Confidence 4556666665 334444443 5777776554
|
|
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.63 Score=43.48 Aligned_cols=80 Identities=16% Similarity=0.229 Sum_probs=50.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|.|+++++|.+++..+...|+ .++.+.++++..+.+ ..+. .. .+ .|..+.+...+.+.+... ...
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~--~~~~~~~~~~~~~~~~~~-~~~ 210 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFC-KKLA---AI-IL--IRYPDEEGFAPKVKKLTG-EKG 210 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHcC---Cc-EE--EecCChhHHHHHHHHHhC-CCC
Confidence 478999999999999999999999996 777788887665554 2232 22 12 222222212222222221 235
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|+++++.|
T Consensus 211 ~d~~i~~~~ 219 (334)
T PTZ00354 211 VNLVLDCVG 219 (334)
T ss_pred ceEEEECCc
Confidence 899998876
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.44 Score=43.89 Aligned_cols=79 Identities=27% Similarity=0.313 Sum_probs=49.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|.+++|.|+ |+||..+++.+...|+..|+++++++.+.+.+ +++. .. .++ |..+. .+.+.+.. ...
T Consensus 119 ~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a-~~~G---a~-~~i--~~~~~---~~~~~~~~-~~~ 186 (280)
T TIGR03366 119 LKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRELA-LSFG---AT-ALA--EPEVL---AERQGGLQ-NGR 186 (280)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---Cc-Eec--Cchhh---HHHHHHHh-CCC
Confidence 46889999986 89999999998889975588888887665443 3332 11 111 22221 12222221 123
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.+.|.
T Consensus 187 g~d~vid~~G~ 197 (280)
T TIGR03366 187 GVDVALEFSGA 197 (280)
T ss_pred CCCEEEECCCC
Confidence 58999998874
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.12 Score=49.97 Aligned_cols=38 Identities=24% Similarity=0.294 Sum_probs=31.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 81 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~ 81 (358)
..+++.|.||||.+|.++++.|+++....|.++.++..
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~s 74 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRK 74 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhh
Confidence 45589999999999999999999995457777777543
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.18 Score=46.68 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=34.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
-+++||.++|+|.+.-+|+.++..|..+|| +|.++.+.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~ 191 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSR 191 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999999999997 88877664
|
|
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.57 Score=45.39 Aligned_cols=43 Identities=28% Similarity=0.302 Sum_probs=35.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
.+.+++|+|++|++|.+++..+...|+ .++.+.+++++.+.+.
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~s~~~~~~~~ 235 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVSSEEKAEYCR 235 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHH
Confidence 478999999999999999999999996 7777888876665543
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.5 Score=43.95 Aligned_cols=81 Identities=19% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..+.+++|.|+++++|.++++.+...|+ .|+++.+++++.+.+ +.+. .. .+ .|..+.+.... +.+.. ...
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~~--~~~~~~~~~~~-~~~~~-~~~ 206 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEEL-KALG---AD-EV--IDSSPEDLAQR-VKEAT-GGA 206 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHH-HhcC---CC-EE--ecccchhHHHH-HHHHh-cCC
Confidence 3578999999999999999999999996 888888877655444 3332 11 11 22222222222 22221 123
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|+++.+.|.
T Consensus 207 ~~d~vl~~~g~ 217 (323)
T cd05282 207 GARLALDAVGG 217 (323)
T ss_pred CceEEEECCCC
Confidence 69999998873
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.17 Score=43.54 Aligned_cols=42 Identities=31% Similarity=0.307 Sum_probs=35.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~ 84 (358)
..+.|+++.|.|- |.||+++|+.|...|+ +|+.++|+.....
T Consensus 32 ~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 32 RELRGKTVGIIGY-GRIGRAVARRLKAFGM-RVIGYDRSPKPEE 73 (178)
T ss_dssp S-STTSEEEEEST-SHHHHHHHHHHHHTT--EEEEEESSCHHHH
T ss_pred cccCCCEEEEEEE-cCCcCeEeeeeecCCc-eeEEecccCChhh
Confidence 4789999999975 9999999999999995 9999999976544
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.57 Score=44.26 Aligned_cols=76 Identities=22% Similarity=0.345 Sum_probs=48.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|+|+++++|.++++.....|+ .|+.+.++. ..+ ..+.+. .. .+ .|..+.+....+ .. .+.
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~-~~~-~~~~~g---~~-~~--~~~~~~~~~~~l----~~-~~~ 227 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTTCSTD-AIP-LVKSLG---AD-DV--IDYNNEDFEEEL----TE-RGK 227 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCcc-hHH-HHHHhC---Cc-eE--EECCChhHHHHH----Hh-cCC
Confidence 489999999999999999999999997 777777652 222 223322 11 12 333333332222 22 246
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 228 vd~vi~~~g~ 237 (350)
T cd08248 228 FDVILDTVGG 237 (350)
T ss_pred CCEEEECCCh
Confidence 9999988773
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.47 Score=46.13 Aligned_cols=42 Identities=26% Similarity=0.287 Sum_probs=34.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~ 86 (358)
.+.+++|+|+++++|.++++.+...|+ .++.+.++..+.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHH
Confidence 478999999999999999999999996 777777776555444
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.51 Score=45.29 Aligned_cols=81 Identities=17% Similarity=0.144 Sum_probs=51.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~ 121 (358)
..|.+++|.| +|++|..+++.+...|+.+|+.+++++.+.+.+ +++. .. .++ |..+. ..+.+.+.+...
T Consensus 183 ~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~g---a~-~~i--~~~~~~~~~~~~~~~~~~-- 252 (365)
T cd08277 183 EPGSTVAVFG-LGAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEFG---AT-DFI--NPKDSDKPVSEVIREMTG-- 252 (365)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcC---CC-cEe--ccccccchHHHHHHHHhC--
Confidence 3588999997 599999999988889965788999987666554 3332 11 122 22221 112222333322
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+.+|++|.+.|.
T Consensus 253 ~g~d~vid~~g~ 264 (365)
T cd08277 253 GGVDYSFECTGN 264 (365)
T ss_pred CCCCEEEECCCC
Confidence 369999998874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.27 Score=46.94 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec---ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACR---DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r---~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.|++++|+|+ |++|...++.+...|+ .|++++| ++.+.+. .+++. .. . +|..+. ++.+ . ..
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~-~~~~G---a~--~--v~~~~~-~~~~----~-~~ 235 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADI-VEELG---AT--Y--VNSSKT-PVAE----V-KL 235 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHH-HHHcC---CE--E--ecCCcc-chhh----h-hh
Confidence 6889999986 9999999998888997 8999988 3444443 33332 22 2 233322 1211 1 11
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
.+.+|++|.++|.
T Consensus 236 ~~~~d~vid~~g~ 248 (355)
T cd08230 236 VGEFDLIIEATGV 248 (355)
T ss_pred cCCCCEEEECcCC
Confidence 2479999999873
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.4 Score=47.29 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=64.3
Q ss_pred eEEEEcCCCchHHHHHHHHHh---CCC---cEEEEEec--ChHHHHHHHHHhcCCC----CceEEEEecCCCHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAE---TGK---WHIIMACR--DFLKAERAAKSAGMAK----ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~---~Ga---~~Vi~~~r--~~~~~~~~~~~~~~~~----~~i~~~~~Dl~~~~~i~~~~ 114 (358)
+|+||||+|-||++++-+++. .|. -.+++++. +.+.++-..-++.... ..+.+. .| +. ..
T Consensus 125 ~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~--~~----ea- 196 (452)
T cd05295 125 QVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD--LD----VA- 196 (452)
T ss_pred EEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC--CH----HH-
Confidence 599999999999999999996 231 24777777 4556655555554321 122222 11 11 12
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+...|++|..+|....+ ..+. ...++.|..-.-.+. +.+.+...+..+|+.+.|
T Consensus 197 ------~~daDvvIitag~prk~----G~~R---~DLL~~N~~Ifk~~g----~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 197 ------FKDAHVIVLLDDFLIKE----GEDL---EGCIRSRVAICQLYG----PLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred ------hCCCCEEEECCCCCCCc----CCCH---HHHHHHHHHHHHHHH----HHHHHhCCCCCeEEEEeC
Confidence 23789999999975322 2233 334555555444444 444443322235555543
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.37 E-value=1 Score=42.12 Aligned_cols=112 Identities=20% Similarity=0.135 Sum_probs=67.5
Q ss_pred EcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 51 TGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 51 TGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.| .|.+|..++..|+..+- ..+++++.+.+.++-...++... ..++.+.. .+.+ .+..-|
T Consensus 2 IG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~~~-----------~~~daD 66 (299)
T TIGR01771 2 IG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GDYS-----------DCKDAD 66 (299)
T ss_pred CC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CCHH-----------HHCCCC
Confidence 45 49999999999998883 47999999876666555555432 12222221 2221 123689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+||..||....+ .++. ...+..|.. +++.+.+.+.+.. +++.++++|-....
T Consensus 67 ivVitag~~rk~----g~~R---~dll~~N~~----i~~~~~~~i~~~~-p~~~vivvsNP~d~ 118 (299)
T TIGR01771 67 LVVITAGAPQKP----GETR---LELVGRNVR----IMKSIVPEVVKSG-FDGIFLVATNPVDI 118 (299)
T ss_pred EEEECCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhC-CCeEEEEeCCHHHH
Confidence 999999975322 2233 233444544 4444444444432 35889998876543
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.24 Score=42.72 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=34.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
++.|.|+ |-+|..+|..++..| +.|++++++++.++...+.+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G-~~V~l~d~~~~~l~~~~~~i 42 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAG-YEVTLYDRSPEALERARKRI 42 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-SEEEEE-SSHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCC-CcEEEEECChHHHHhhhhHH
Confidence 3678888 999999999999999 69999999988777665554
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.66 Score=44.46 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=51.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-C-
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-G- 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~- 121 (358)
.+.+++|+| .|.||...+..+...|+..|+++++++.+++.+.+.... ..+ .+.... .....+.+. .
T Consensus 168 ~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-----~~~-~~~~~~----~~~~~~~~~t~g 236 (350)
T COG1063 168 PGGTVVVVG-AGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-----DVV-VNPSED----DAGAEILELTGG 236 (350)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-----eEe-ecCccc----cHHHHHHHHhCC
Confidence 344777776 588999998888889988999999999888877654321 111 111111 222222222 2
Q ss_pred CCccEEEEccc
Q 018331 122 RPLDVLVCNAA 132 (358)
Q Consensus 122 ~~iD~lv~~ag 132 (358)
..+|++|=++|
T Consensus 237 ~g~D~vie~~G 247 (350)
T COG1063 237 RGADVVIEAVG 247 (350)
T ss_pred CCCCEEEECCC
Confidence 26999999999
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.46 Score=51.01 Aligned_cols=85 Identities=22% Similarity=0.247 Sum_probs=55.9
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCC--ceE
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKE--NYT 98 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~--~i~ 98 (358)
...|++.+|+|.| .||+|..+++.|+..|..++.+++.+. .+.+.+.+.+..-+. ++.
T Consensus 327 Q~kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~ 405 (989)
T PRK14852 327 QRRLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIR 405 (989)
T ss_pred HHHHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEE
Confidence 3568899999998 679999999999999987888877542 334444444443333 444
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCccEEEEcccc
Q 018331 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV 133 (358)
Q Consensus 99 ~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~ 133 (358)
.+...++ .+.+.++++ .+|+||.+...
T Consensus 406 ~~~~~I~-~en~~~fl~-------~~DiVVDa~D~ 432 (989)
T PRK14852 406 SFPEGVA-AETIDAFLK-------DVDLLVDGIDF 432 (989)
T ss_pred EEecCCC-HHHHHHHhh-------CCCEEEECCCC
Confidence 4544443 344444444 57887766543
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.34 Score=44.71 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=71.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|+|++|.||+|.+|.-+-+.-.-.|| .|+..+-+.++...+..++.- . ...|--.+..+..++.++.. ..
T Consensus 153 ~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~---d---~afNYK~e~~~~~aL~r~~P--~G 223 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGF---D---DAFNYKEESDLSAALKRCFP--EG 223 (343)
T ss_pred CCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCC---c---cceeccCccCHHHHHHHhCC--Cc
Confidence 579999999999999987777777897 888888887777666555421 1 12334444455555554432 27
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
||+.+-|.|.- +..+.+..|+.+ |||+..+-++.+
T Consensus 224 IDiYfeNVGG~---------------------------~lDavl~nM~~~----gri~~CG~ISqY 258 (343)
T KOG1196|consen 224 IDIYFENVGGK---------------------------MLDAVLLNMNLH----GRIAVCGMISQY 258 (343)
T ss_pred ceEEEeccCcH---------------------------HHHHHHHhhhhc----cceEeeeeehhc
Confidence 99999999863 123344455654 699998766655
|
|
| >KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.3 Score=44.89 Aligned_cols=85 Identities=21% Similarity=0.198 Sum_probs=64.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|-+++--||++++|+++.+.....| ++-+-+.|+....+++.+.+++.+....+-+-.+.+.+ ..+..-.+++
T Consensus 160 ~GD~vIQNganS~VG~~ViQlaka~G-iktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~-----~~k~~~~~~~ 233 (354)
T KOG0025|consen 160 KGDSVIQNGANSGVGQAVIQLAKALG-IKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRK-----MKKFKGDNPR 233 (354)
T ss_pred CCCeeeecCcccHHHHHHHHHHHHhC-cceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchh-----hhhhhccCCC
Confidence 47789999999999999999999999 57778888888888888888876666555444444443 2233335678
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+..-+||.|.-
T Consensus 234 prLalNcVGGk 244 (354)
T KOG0025|consen 234 PRLALNCVGGK 244 (354)
T ss_pred ceEEEeccCch
Confidence 89999999863
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.25 E-value=0.44 Score=45.68 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=47.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|++++|.|+ |+||..+++.+...|+ .|++++.+.++.....+++. .. .++ |..+.+.+.+ ..+.
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~G---a~-~vi--~~~~~~~~~~-------~~~~ 247 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRLG---AD-SFL--VSTDPEKMKA-------AIGT 247 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhCC---Cc-EEE--cCCCHHHHHh-------hcCC
Confidence 5889999765 9999999999989997 77777776544444444432 21 122 3333222222 1235
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|.+.|
T Consensus 248 ~D~vid~~g 256 (360)
T PLN02586 248 MDYIIDTVS 256 (360)
T ss_pred CCEEEECCC
Confidence 899999887
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.62 Score=43.94 Aligned_cols=80 Identities=25% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.++||.|+++++|.+++..+...|+ +|+.+.+++++.+.. +.+. .. .+ .+..+.+..+.+ .+.. ..+.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~-~~~g---~~-~v--~~~~~~~~~~~~-~~~~-~~~~ 234 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELA-KELG---AD-AF--VDFKKSDDVEAV-KELT-GGGG 234 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHcC---Cc-EE--EcCCCccHHHHH-HHHh-cCCC
Confidence 478999999999999999999999996 899999987665544 3332 11 11 223333222222 2221 1246
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++++.+.
T Consensus 235 vd~vl~~~~~ 244 (341)
T cd08297 235 AHAVVVTAVS 244 (341)
T ss_pred CCEEEEcCCc
Confidence 9999986653
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.56 Score=45.34 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=48.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |++|..+++.....|+ .|+++++++++.....+.+. .. .+ .|..+.+.+.+ ..+.
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lG---a~-~~--i~~~~~~~v~~-------~~~~ 242 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLG---AD-SF--LVTTDSQKMKE-------AVGT 242 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCC---Cc-EE--EcCcCHHHHHH-------hhCC
Confidence 5889999886 9999999999999997 78888877544333334432 21 12 23333222221 1236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 243 ~D~vid~~G~ 252 (375)
T PLN02178 243 MDFIIDTVSA 252 (375)
T ss_pred CcEEEECCCc
Confidence 8999999874
|
|
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.38 Score=45.32 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.++++||.|+++++|.++++.+...|+ .|+++.++.
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~ 181 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDR 181 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCC
Confidence 578999999999999999999999996 777777764
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.59 Score=44.05 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
...++++|.| +|+.|+..++.++. ++..+|.+.+|+.++.+...+.++..+..+.. + ++..+++.
T Consensus 123 ~~~~~v~iiG-~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~--~-----~~~~~av~------ 188 (314)
T PRK06141 123 KDASRLLVVG-TGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEV--V-----TDLEAAVR------ 188 (314)
T ss_pred CCCceEEEEC-CcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEE--e-----CCHHHHHh------
Confidence 3568899999 59999999987765 56578999999998888887776543222222 1 22233332
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
.-|+||++...
T Consensus 189 -~aDIVi~aT~s 199 (314)
T PRK06141 189 -QADIISCATLS 199 (314)
T ss_pred -cCCEEEEeeCC
Confidence 57999888774
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=93.16 E-value=2.9 Score=38.31 Aligned_cols=126 Identities=11% Similarity=0.009 Sum_probs=72.5
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|.++|=.|+. |+....++..+...| .|+.++.+...++.+.+.++..+ .++.++..|..+.. ...
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g--~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~----------~~~ 138 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEG--AIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG----------AAV 138 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCC--EEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh----------hhc
Confidence 35566666655 666767766654445 79999999988888877776554 35777777754321 112
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHh-HH---hhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEG-FE---LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~-~~---~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+.+|.|+.++-..+.+ .+ ...++. |. +.+..-..-...+++.+++.++. +|++|+.++..
T Consensus 139 ~~fD~Vl~D~Pcsg~G-~~-~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp----gG~lvYstcs~ 202 (264)
T TIGR00446 139 PKFDAILLDAPCSGEG-VI-RKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP----GGVLVYSTCSL 202 (264)
T ss_pred cCCCEEEEcCCCCCCc-cc-ccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC----CCEEEEEeCCC
Confidence 4699999987655332 11 111211 11 11111111223366666666654 47998876543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.46 Score=47.07 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=35.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 83 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~ 83 (358)
..+.||+++|.|.. .||+.+|+.|...|+ +|+++.+++...
T Consensus 250 ~~LaGKtVgVIG~G-~IGr~vA~rL~a~Ga-~ViV~e~dp~~a 290 (476)
T PTZ00075 250 VMIAGKTVVVCGYG-DVGKGCAQALRGFGA-RVVVTEIDPICA 290 (476)
T ss_pred CCcCCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEeCCchhH
Confidence 36899999999976 699999999999997 899998876543
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.6 Score=44.37 Aligned_cols=80 Identities=28% Similarity=0.353 Sum_probs=51.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|++++|+|+ +++|..+++.+...|+..|+++++++++.+.+ +.+. .. .+ .|..+.+..+.+ .+.. ..+.
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~g---a~-~~--i~~~~~~~~~~l-~~~~-~~~~ 241 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EELG---AT-IV--LDPTEVDVVAEV-RKLT-GGGG 241 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhC---CC-EE--ECCCccCHHHHH-HHHh-CCCC
Confidence 5789999985 89999999999999954788888887766544 3332 22 11 233333222222 2221 1235
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 242 ~d~vid~~g~ 251 (351)
T cd08233 242 VDVSFDCAGV 251 (351)
T ss_pred CCEEEECCCC
Confidence 9999999874
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.3 Score=41.36 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=48.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC-CHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFVD 115 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~-~~~~i~~~~~ 115 (358)
.|+++.|+|+.| ||.--++.--+.| .+|++++++.++-++..+.+.+ ... +|.+ +.+.++++.+
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG-~rV~vis~~~~kkeea~~~LGA---d~f---v~~~~d~d~~~~~~~ 245 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMG-MRVTVISTSSKKKEEAIKSLGA---DVF---VDSTEDPDIMKAIMK 245 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhC-cEEEEEeCCchhHHHHHHhcCc---cee---EEecCCHHHHHHHHH
Confidence 699999999988 9977777666789 5999999998777777776642 222 4566 6776666655
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.68 Score=36.96 Aligned_cols=66 Identities=27% Similarity=0.392 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC--CCccEEEEcccc
Q 018331 56 GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG--RPLDVLVCNAAV 133 (358)
Q Consensus 56 gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~--~~iD~lv~~ag~ 133 (358)
|||...++.+...| .+|+++++++.+.+.+.+ +. .. .+ .|-.+.+ +.+++.+.. .++|++|.|+|.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~-~G---a~-~~--~~~~~~~----~~~~i~~~~~~~~~d~vid~~g~ 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE-LG---AD-HV--IDYSDDD----FVEQIRELTGGRGVDVVIDCVGS 68 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH-TT---ES-EE--EETTTSS----HHHHHHHHTTTSSEEEEEESSSS
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh-hc---cc-cc--ccccccc----cccccccccccccceEEEEecCc
Confidence 68999999999999 599999999877665543 32 11 22 3444333 333333332 369999999993
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.8 Score=44.12 Aligned_cols=80 Identities=15% Similarity=0.183 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHH-HHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD-SVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~-~i~~~~~~~~~~~~ 122 (358)
.|.+++|.| .+++|.+++..+...|+..|+++++++.+.+.+ +.+.. . .++ +..+.+ ...+.+.+... +
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lGa---~-~~i--~~~~~~~~~~~~v~~~~~--~ 259 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELGA---T-ECI--NPQDYKKPIQEVLTEMTD--G 259 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcCC---c-eEe--cccccchhHHHHHHHHhC--C
Confidence 478999996 699999999999999964788999887766555 33431 1 222 222111 12233333322 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|+++.+.|.
T Consensus 260 ~~d~vld~~g~ 270 (373)
T cd08299 260 GVDFSFEVIGR 270 (373)
T ss_pred CCeEEEECCCC
Confidence 69999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.6 Score=45.47 Aligned_cols=118 Identities=16% Similarity=0.116 Sum_probs=66.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|.+++| +|+|+||..+++.+...|+..|+++++++++.+.+. ++. .. ..|.....+..+.+.++.. ..
T Consensus 184 ~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~-~~G---a~----~v~~~~~~~~~~~v~~~~~-~~ 253 (393)
T TIGR02819 184 GPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQAR-SFG---CE----TVDLSKDATLPEQIEQILG-EP 253 (393)
T ss_pred CCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHH-HcC---Ce----EEecCCcccHHHHHHHHcC-CC
Confidence 45789999 566999999999888899755666677765555443 332 22 1333322222233333222 23
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.+|++|.++|....+.. .+... ...-..++.++..++. +|+|++++..
T Consensus 254 g~Dvvid~~G~~~~~~~-----~~~~~-------~~~~~~~~~~~~~~~~----~G~i~~~G~~ 301 (393)
T TIGR02819 254 EVDCAVDCVGFEARGHG-----HDGKK-------EAPATVLNSLMEVTRV----GGAIGIPGLY 301 (393)
T ss_pred CCcEEEECCCCcccccc-----ccccc-------cchHHHHHHHHHHhhC----CCEEEEeeec
Confidence 59999999996422110 01100 0222233444555554 3799998764
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.53 Score=43.80 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=26.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+||.| .||+|.++++.|+..|..++.+++.+
T Consensus 2 VlVVG-aGGlG~eilknLal~Gvg~I~IvD~D 32 (291)
T cd01488 2 ILVIG-AGGLGCELLKNLALSGFRNIHVIDMD 32 (291)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 67776 78999999999999998888887754
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.66 Score=45.18 Aligned_cols=40 Identities=35% Similarity=0.412 Sum_probs=34.0
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
+...|+..+|+|.|+ ||+|..+++.|+..|..++.+++.+
T Consensus 32 ~q~~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 32 GQKRLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HHHHHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 345788899999976 6999999999999998889988764
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.67 Score=35.43 Aligned_cols=72 Identities=18% Similarity=0.154 Sum_probs=49.7
Q ss_pred cCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccEEEEc
Q 018331 52 GASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 130 (358)
Q Consensus 52 Gas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ 130 (358)
-|+|...+.++..+ ..|. ..++.++.++..++...+.....+.++.+++.|+.+.. ...+++|+|+++
T Consensus 6 cG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~----------~~~~~~D~v~~~ 74 (101)
T PF13649_consen 6 CGTGRVTRALARRF-DAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP----------FSDGKFDLVVCS 74 (101)
T ss_dssp -TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH----------HHSSSEEEEEE-
T ss_pred cCCcHHHHHHHHHh-hhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc----------ccCCCeeEEEEc
Confidence 35666777777777 5562 48999999998888888777655568999999998853 123489999996
Q ss_pred cccc
Q 018331 131 AAVY 134 (358)
Q Consensus 131 ag~~ 134 (358)
...+
T Consensus 75 ~~~~ 78 (101)
T PF13649_consen 75 GLSL 78 (101)
T ss_dssp TTGG
T ss_pred CCcc
Confidence 6533
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.32 Score=46.54 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=34.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
..+.||++.|.|- |.||+++|+.|...|+ +|+.++|+.
T Consensus 155 ~~l~gktvGIiG~-G~IG~~vA~~l~afG~-~V~~~dr~~ 192 (347)
T PLN02928 155 DTLFGKTVFILGY-GAIGIELAKRLRPFGV-KLLATRRSW 192 (347)
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHhhCCC-EEEEECCCC
Confidence 3689999999987 9999999999999995 999999874
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=2.1 Score=40.44 Aligned_cols=125 Identities=11% Similarity=0.082 Sum_probs=69.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc----CCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG----MAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~----~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.+.+.|.| +|.+|..++..++..|...|++++.+++.++.....+. ..+....+... ++.+ .
T Consensus 5 ~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d~~-------~--- 71 (321)
T PTZ00082 5 KRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NNYE-------D--- 71 (321)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CCHH-------H---
Confidence 346799999 58899999999999994379999998764421111111 11111222210 2221 1
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+..-|+||+++|....+. ..+.+... ...+..|+ .+.+.+.+.+.+.. +++.++++|-....
T Consensus 72 -l~~aDiVI~tag~~~~~~-~~~~~~~r-~~~l~~n~----~i~~~i~~~i~~~~-p~a~~iv~sNP~di 133 (321)
T PTZ00082 72 -IAGSDVVIVTAGLTKRPG-KSDKEWNR-DDLLPLNA----KIMDEVAEGIKKYC-PNAFVIVITNPLDV 133 (321)
T ss_pred -hCCCCEEEECCCCCCCCC-CCcCCCCH-HHHHHHHH----HHHHHHHHHHHHHC-CCeEEEEecCcHHH
Confidence 236899999999753321 11111111 33344454 45566666665544 24678888765543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 358 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 2e-16 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 2e-07 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 2e-06 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 2e-06 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 2e-06 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 3e-06 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-06 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 6e-06 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 2e-05 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-05 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 5e-05 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 1e-04 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 2e-04 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 2e-04 | ||
| 3awd_A | 260 | Crystal Structure Of Gox2181 Length = 260 | 4e-04 | ||
| 2ztm_A | 260 | T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase L | 6e-04 | ||
| 1wmb_A | 260 | Crystal Structure Of Nad Dependent D-3-Hydroxybutyl | 6e-04 | ||
| 2ztu_A | 260 | T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase C | 6e-04 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 7e-04 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 8e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|3AWD|A Chain A, Crystal Structure Of Gox2181 Length = 260 | Back alignment and structure |
|
| >pdb|2ZTM|A Chain A, T190s Mutant Of D-3-Hydroxybutyrate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|1WMB|A Chain A, Crystal Structure Of Nad Dependent D-3-Hydroxybutylate Dehydrogenase Length = 260 | Back alignment and structure |
|
| >pdb|2ZTU|A Chain A, T190a Mutant Of D-3-Hydroxybutyrate Dehydrogenase Complexed With Nad+ Length = 260 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 196 bits (501), Expect = 5e-61
Identities = 94/347 (27%), Positives = 130/347 (37%), Gaps = 74/347 (21%)
Query: 24 TMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA 83
+M + A D+ S + +V+ITGA+SGLG TA+ LA G +IMA RD K
Sbjct: 2 SMTGWTAA-DLPSFAQR------TVVITGANSGLGAVTARELARRG-ATVIMAVRDTRKG 53
Query: 84 ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF 143
E AA++ + LDL L SVR+F D DVL+ NA +
Sbjct: 54 EAAARTMA---GQVEVRELDLQDLSSVRRFADGVSG----ADVLINNAGIMAV---PYAL 103
Query: 144 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203
T +GFE +GTNHLGHF L+ LLL L R++ V S+
Sbjct: 104 TVDGFESQIGTNHLGHFALTNLLLPRLT------DRVVTVSSMA-------------HWP 144
Query: 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASL 262
G + L LN S + AY SK+ N+L E RR + + +
Sbjct: 145 GRIN-----LEDLNWRS----RRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAA 195
Query: 263 YPGCIATTGLFREHIP------LFRLLFPPFQKYITKG-----YV-SEDEAGKRLAQVVS 310
+PG + T L L G Y S+D G
Sbjct: 196 HPG-YSHTNLQG-ASGRKLGDALMSAATRVVATDADFGARQTLYAASQDLPGDSFVGP-- 251
Query: 311 DPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 357
Y + S+ A D A +W +SE+L
Sbjct: 252 ------RFGYLGRTQ-----PVGRSRRAKDAGMAAALWALSEQLTKT 287
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-49
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 14/231 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 7 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
S+R D R+ LDVLV NA + +PT E+++ TN G + LL
Sbjct: 67 QSIRALRDFLRKEYGGLDVLVNNAGIAFKV-ADPTPFHIQAEVTMKTNFFGTRDVCTELL 125
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMID---- 223
+K P R++ V SI + + + L GL + + D
Sbjct: 126 PLIK----PQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 181
Query: 224 --GGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIAT 269
+ + AY +K+ + + R+ E+ I + PG + T
Sbjct: 182 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRT 232
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 2e-34
Identities = 60/338 (17%), Positives = 105/338 (31%), Gaps = 74/338 (21%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
M P ++ ++ ++TG + G+G K L+ G +++ CRD K
Sbjct: 1 MPETCP----NTVTKRRC-----AVVTGGNKGIGFEICKQLSSNG-IMVVLTCRDVTKGH 50
Query: 85 RAAKS-AGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 142
A + EN LD+ + ++ D + LD+LV NA V +
Sbjct: 51 EAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADR 110
Query: 143 F-----------------------------TAEGFELSVGTNHLGHFLLSRLLLDDLKQS 173
F T E E + N+ G ++ +L+ L+ S
Sbjct: 111 FKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLS 170
Query: 174 DYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG---------LNGLNSSSMIDG 224
D P R++ V S TG+ N LGD L + +
Sbjct: 171 DSP--RIVNVSSSTGSL-KYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETN 227
Query: 225 GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284
G AY SK C + + + PG + T +
Sbjct: 228 GWPSFGAAYTTSKACLNAYTRVLANKI---PKFQVNCVCPGLVK-TEMNYGIGNY----- 278
Query: 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322
+ +E + + ++ P SG ++
Sbjct: 279 ------------TAEEGAEHVVRIALFPDDGPSGFFYD 304
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-29
Identities = 54/297 (18%), Positives = 88/297 (29%), Gaps = 76/297 (25%)
Query: 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
SV++TGA+ G+GL + L + HII RD KA ++ L +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKD---SRVHVLPLTVT 61
Query: 106 SLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
S+ FV L +L+ NA V L + N LL+
Sbjct: 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLT 121
Query: 164 RLLLDDLKQSDYPS---------KRLIIV----GSITGNTNTLAGNVPPKANLGDLRGFA 210
+ LL LK + +I + GSIT NT
Sbjct: 122 QKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT-------------------- 161
Query: 211 GGLNGLNSSSMIDGGDFDGAKAYKDSKV-CNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269
G AY+ SK NM ++ + + PG + T
Sbjct: 162 ------------SGSAQFPVLAYRMSKAAINMFGRT-LAVDL-KDDNVLVVNFCPGWVQT 207
Query: 270 --TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324
G ++ +++ L + + +G ++ N
Sbjct: 208 NLGG--------------------KNAALTVEQSTAELISSFNKLDNSHNGRFFMRN 244
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-26
Identities = 55/287 (19%), Positives = 105/287 (36%), Gaps = 57/287 (19%)
Query: 47 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
S++ITG + GLGL KAL + H+ CR+ +A+ + N I+ +DL
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAK-ELEDLAKNHSNIHILEIDL 81
Query: 105 ASLDSVRQFVDTFRRS--GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 82 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 141
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM- 221
++ L LK++ ++ + + N+ SS +
Sbjct: 142 AKACLPLLKKAAKANE-----------SQPMGVGRAAIINM--------------SSILG 176
Query: 222 -IDGGDFDGAKAYKDSKVC-NMLTMQEFHRRFHEETGIAFASLYPGCIAT--TGLFREHI 277
I G G AY+ SK N T I SL+PG + T G
Sbjct: 177 SIQGNTDGGMYAYRTSKSALNAATKS-LSVDL-YPQRIMCVSLHPGWVKTDMGG------ 228
Query: 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324
+ + + ++ Q +S ++G + +++
Sbjct: 229 --------------SSAPLDVPTSTGQIVQTISKLGEKQNGGFVNYD 261
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 3e-18
Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 8/141 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+TGA SGLG A L E G + M R + + ++ G + DLA
Sbjct: 6 IIVTGAGSGLGRALTIGLVERG-HQVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHH 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ V G ++++ A +TAE + +N + L+++ +
Sbjct: 62 EDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVG-VYTAEQIRRVMESNLVSTILVAQQTV 120
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+ + L V S
Sbjct: 121 RLIGER---GGVLANVLSSAA 138
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 81.8 bits (203), Expect = 3e-18
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 6/150 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA++G G + + G +I R + ER + +N I LD+ +
Sbjct: 3 VLVTGATAGFGECITRRFIQQG-HKVIATGR---RQERLQELKDELGDNLYIAQLDVRNR 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
++ + + + +D+LV NA + L + E +E + TN+ G ++R +L
Sbjct: 59 AAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVL 118
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ + + +I +GS G+ GNV
Sbjct: 119 PGMVERN--HGHIINIGSTAGSWPYAGGNV 146
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 7e-18
Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TGA SG+G A A ALA G + + +A R + A G ++ + D+
Sbjct: 31 AIVTGAGSGVGRAVAVALAGAG-YGVALAGRRLDALQETAAEIG---DDALCVPTDVTDP 86
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
DSVR T + GR +DVL NA P T ++ V TN G FL ++
Sbjct: 87 DSVRALFTATVEKFGR-VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEA 145
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
+K + R+I GSI+
Sbjct: 146 FRVMKAQEPRGGRIINNGSISA 167
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 8e-18
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 48 VIITGASSGLGLATAKALAETGK--WHIIMACR--DFLKAERAAKSAGMAKENYTIMHLD 103
V+ITGAS+G+G ATA E +I+A R + L+ + + LD
Sbjct: 36 VLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLD 95
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+ + ++ F++ + + +D+LV NA L + + E + TN ++
Sbjct: 96 ITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINIT 155
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ +L + + S ++ +GSI G G++
Sbjct: 156 QAVLPIFQAKN--SGDIVNLGSIAGRDAYPTGSI 187
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 80.5 bits (199), Expect = 1e-17
Identities = 52/292 (17%), Positives = 95/292 (32%), Gaps = 57/292 (19%)
Query: 48 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHL--D 103
++TGAS G G A A LA ++++ R + + G + + ++ D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 104 LASLDSVRQFVDTFRRSGRP----LDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 157
L + V++ + R RP +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 158 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLN 217
L+ L+ + S SK ++ + S+ L+ + G
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNISSLCA-----------------LQPYKGWG---- 167
Query: 218 SSSMIDGGDFDGAKAYKDSK--VCNMLTMQEFHRRFHEETGIAFASLYPGCIAT--TGLF 273
Y K +ML Q EE + S PG + L
Sbjct: 168 --------------LYCAGKAAR-DMLY-QVLAA---EEPSVRVLSYAPGPLDNDMQQLA 208
Query: 274 REHIPLFRLLFPPFQKYITKGYVSE-DEAGKRLAQVVSDPSLTKSGVYWSWN 324
RE L QK + G + + + ++L ++ + +SG + +
Sbjct: 209 RETSKDPELR-SKLQKLKSDGALVDCGTSAQKLLGLLQKDTF-QSGAHVDFY 258
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 3e-17
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 13/168 (7%)
Query: 35 SSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKS 89
S + + ++ ITGA+SG G A A+ AE G W +++ R L E +AK+
Sbjct: 11 SGLVPRGSHMSSTLFITGATSGFGEACARRFAEAG-WSLVLTGRREERLQALAGELSAKT 69
Query: 90 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 149
+ LD+ ++ VD L L+ NA + L T + + ++
Sbjct: 70 RVLPLT------LDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWD 123
Query: 150 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
V TN G +RLLL L + ++ +GS+ G +V
Sbjct: 124 TMVDTNIKGLLYSTRLLLPRLIAHGAGA-SIVNLGSVAGKWPYPGSHV 170
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-17
Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR-----DFLKAERAAKSAGMAKENYTIMHL 102
+ITGAS G+G A A+ALA G + + + R + + E + HL
Sbjct: 5 AVITGASRGIGEAIARALARDG-YALALGARSVDRLEKIAHELMQEQGVEV----FYHHL 59
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
D++ +SV +F +DV+V NA + + + E F + N LG +
Sbjct: 60 DVSKAESVEEFSKKVLERFGDVDVVVANAGL-GYFKRLEELSEEEFHEMIEVNLLGVWRT 118
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202
+ LD LK+ + L +V T+ ++ + P
Sbjct: 119 LKAFLDSLKR----TGGLALV-----TTSDVSARLIPYGG 149
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 7e-17
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 36/191 (18%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 108 DSVRQFV-DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ +Q + D + + +D LV A + T V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV--------LGNVVSVNYFGATELMDAF 97
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 226
L LK+ P+ V +++A G + + G+
Sbjct: 98 LPALKKGHQPA----AV-----VISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 227 FDGAKAYKDSK 237
G AY SK
Sbjct: 149 QGGNLAYAGSK 159
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-17
Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
KG+V+ITGAS G+G ATA+ L G + + + RD + + A A +
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQALAAELEGA----LPLP 56
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
D+ + V + L LV NA V T E + L + TN G FL
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGV-GVMKPVHELTLEEWRLVLDTNLTGAFL 115
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
R + L + ++ VGS+ G G
Sbjct: 116 GIRHAVPALLRRG--GGTIVNVGSLAGKNPFKGGAA 149
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 8e-17
Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 4/166 (2%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
+ T + QGK + ++TG +G+G A+AL+ G + +++ R +
Sbjct: 13 LGTENLYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEG-YSVVITGRRPDVLD 71
Query: 85 RAAKSAGMAK-ENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT 142
AA G + D+ D V R LD+LV NA +P
Sbjct: 72 AAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFAR-LDLLVNNAGSNVPPVPLEE 130
Query: 143 FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
T E + V N G FL ++ +K R+I GSI+
Sbjct: 131 VTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISA 176
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 37/173 (21%), Positives = 66/173 (38%), Gaps = 15/173 (8%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
MA+ + + KK V+ITGASSG+G A A+ +E G +++ R
Sbjct: 1 MASMTGGQQMGRGSMKKL-----VVITGASSGIGEAIARRFSEEG-HPLLLLAR------ 48
Query: 85 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 144
R + + N +D+ + + + P D +V NA + + + T
Sbjct: 49 RVERLKALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIVNNAGM-MLLGQIDTQE 107
Query: 145 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
A ++ N LG + +L +K + +I + SI G
Sbjct: 108 ANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKKTFPDHAA 158
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-16
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 4/152 (2%)
Query: 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 96
P+ +K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAK 81
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH 156
+D ++ + + + + +LV NA V + T+ E + N
Sbjct: 82 VHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGV-VYTSDLFATQDPQIEKTFEVNV 140
Query: 157 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
L HF ++ L + +++ ++ V S G
Sbjct: 141 LAHFWTTKAFLPAMTKNN--HGHIVTVASAAG 170
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-16
Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 5/147 (3%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
T R +V + GA +G AK A G + + R+ K A
Sbjct: 4 TPRNATVAVIGAGDYIGAEIAKKFAAEG-FTVFAGRRNGEKLAPLVAEIEAAGGRIVARS 62
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
LD + D V F++ PL+V + N + T T F F+
Sbjct: 63 LDARNEDEVTAFLNAADAHA-PLEVTIFNVGANVNFPILET-TDRVFRKVWEMACWAGFV 120
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITG 188
R + ++ G+
Sbjct: 121 SGRESARLMLAHGQG--KIFFTGATAS 145
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-16
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G+ K L+ + E A A E + D+
Sbjct: 8 AVVTGATGGMGIEIVKDLSRDH-IVYALGRN----PEHLAALA--EIEGVEPIESDIVKE 60
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
VD + +D LV AAV T E + + + N + LSR LL
Sbjct: 61 VLEEGGVDKLKNLDH-VDTLVHAAAVARDTTIE-AGSVAEWHAHLDLNVIVPAELSRQLL 118
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
L+ + S +I + S G
Sbjct: 119 PALRAA---SGCVIYINSGAG 136
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 3e-16
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 22/159 (13%)
Query: 35 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89
+ +GS +++ G S LG K W+ I DF + A S
Sbjct: 7 HHHHSSGLVPRGSHMSKNILVLGGSGALGAEVVKFFKSKS-WNTISI--DFRENPNADHS 63
Query: 90 AGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE 149
+ + + ++ ++ +D VC A + + +
Sbjct: 64 ----------FTIKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVK 113
Query: 150 LSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+ N F + + L Q ++ G+
Sbjct: 114 GMIDMNLYSAFASAHIGAKLLNQGG----LFVLTGASAA 148
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-16
Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VI+ G LG A + + G + ++ D ++A + + + +
Sbjct: 6 VIVYGGKGALGSAILEFFKKNG-YTVLNI--DLSANDQADSNILVD------GNKNWTEQ 56
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ G +D + C A + + + +L + + + ++L
Sbjct: 57 EQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLAT 116
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
LK L + G+
Sbjct: 117 THLKPGG----LLQLTGAAAA 133
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 4e-16
Identities = 23/141 (16%), Positives = 45/141 (31%), Gaps = 13/141 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++ G LG +A W + D ++ E A+ S + +
Sbjct: 10 VLVYGGRGALGSRCVQAFRARN-WWVASI--DVVENEEASASVIVK-----MTDSFTEQA 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D V V + +D ++C A + + + +L + + S L
Sbjct: 62 DQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLAT 120
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
LK+ L + G+
Sbjct: 121 KHLKEGG----LLTLAGAKAA 137
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 28/145 (19%), Positives = 57/145 (39%), Gaps = 9/145 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 106
+++TG S G+G + L K ++ R ++ + G + + + D+
Sbjct: 5 ILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---DRFFYVVGDITE 61
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
++Q V+ + G+ +D LV NA V P ++ N L +
Sbjct: 62 DSVLKQLVNAAVKGHGK-IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGI 120
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNT 190
L +LK++ + ++ V S N
Sbjct: 121 ALPELKKT---NGNVVFVSSDACNM 142
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 5e-16
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGA G+G T KAL +G ++ R AK + + +DL D
Sbjct: 11 LVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIE----PVCVDLGDWD 65
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ + + +D+LV NAA+ + T E F+ S N F +S+
Sbjct: 66 ATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQ 116
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 6e-16
Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLAS 106
VI+TGAS G+G A LA+ G H+++ R ++ + + + +
Sbjct: 31 VIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 89
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ QFV + G LD+L+ N S+ N L + +L+
Sbjct: 90 MTFAEQFVAQAGKLMGG-LDMLILNHITNTSLNLFHDDI--HHVRKSMEVNFLSYVVLTV 146
Query: 165 LLLDDLKQSDYPSKRLIIVGSITG 188
L LKQS + +++V S+ G
Sbjct: 147 AALPMLKQS---NGSIVVVSSLAG 167
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-16
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 4/150 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++ITGAS G+G A+ L G I++ R + E A A LD+
Sbjct: 7 ILITGASGGIGEGIARELGVAG-AKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDR 65
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
SV F + +DVLV NA V +P + + +E + N G +L
Sbjct: 66 HSVAAFAQAAVDTWGRIDVLVNNAGV-MPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVL 124
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
++ S ++I +GSI + V
Sbjct: 125 PIMEAQR--SGQIINIGSIGALSVVPTAAV 152
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 7e-16
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA G+G T +AL TG ++ R + + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECPGIE----PVCVDLGDW 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++ + + + +D+LV NAAV L T E F+ S N +S+
Sbjct: 65 EATERALGSVGP----VDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQ 116
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 8e-16
Identities = 40/145 (27%), Positives = 65/145 (44%), Gaps = 8/145 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 104
+++TGA+ G+G A A+A A G +++ R + KSAG + ++L+
Sbjct: 17 ILVTGAARGIGAAAARAYAAHG-ASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLEN 75
Query: 105 ASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
A+ R+ GR LD L+ NA++ P E F + N F+L+
Sbjct: 76 ATAQQYRELAARVEHEFGR-LDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLT 134
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITG 188
R LL LK+S+ S + S G
Sbjct: 135 RALLPLLKRSEDAS--IAFTSSSVG 157
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-15
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 45 KGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAER---AAKSAGMAKENYTI 99
+ V+ITG SSG+GL A LA + + RD R AA++ +
Sbjct: 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLET 61
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEG---FELSVGTNH 156
+ LD+ SV + GR +DVLVCNA + L E + N
Sbjct: 62 LQLDVRDSKSVAAARERV-TEGR-VDVLVCNAGLGLLGPLEALGEDAVASVLD----VNV 115
Query: 157 LGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+G + + L D+K+ S R+++ GS+ G
Sbjct: 116 VGTVRMLQAFLPDMKRRG--SGRVLVTGSVGG 145
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-15
Identities = 29/159 (18%), Positives = 62/159 (38%), Gaps = 10/159 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 105
++TGAS G+G A A+AL + G ++ R ++ A + DL+
Sbjct: 35 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 93
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + + R +D+ + NA + + + G++ N L + +R
Sbjct: 94 NEEDILSMFSAIRSQHSGVDICINNAGL-ARPDTLLSGSTSGWKDMFNVNVLALSICTRE 152
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204
+K+ + +I + S++G+ V P +
Sbjct: 153 AYQSMKERNVDDGHIININSMSGHR------VLPLSVTH 185
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 33/142 (23%), Positives = 54/142 (38%), Gaps = 6/142 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+I+G LG A+ AE G +++A R + E AK + D+
Sbjct: 14 VVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDD 72
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
V VD T + GR +DV++ NA T E ++ G L +
Sbjct: 73 AQVAHLVDETMKAYGR-VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGF 131
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
L++S ++ V S+
Sbjct: 132 TPALEES---KGAVVNVNSMVV 150
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 36/148 (24%), Positives = 58/148 (39%), Gaps = 15/148 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
++TG S G+G A+ L E G + + RD A + G + DL
Sbjct: 32 ALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDC----QAIPADL 86
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLL 162
+S R+ LD+LV NA + ++ G+E + N F
Sbjct: 87 SSEAGARRLAQALGELSARLDILVNNAGT---SWGAALESYPVSGWEKVMQLNVTSVFSC 143
Query: 163 SRLLLDDLKQSDYPSK--RLIIVGSITG 188
+ LL L++S R+I +GS+ G
Sbjct: 144 IQQLLPLLRRSASAENPARVINIGSVAG 171
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 12/163 (7%)
Query: 27 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86
S + QG TL ++ITGAS +GL A L E G +I++ R +
Sbjct: 9 HHSSGRENLYFQGHMTLSSAPILITGASQRVGLHCALRLLEHG-HRVIISYRTEHASVTE 67
Query: 87 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
+ AG ++ D + + F+D + L +V NA+ +L P A+
Sbjct: 68 LRQAGAV-----ALYGDFSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAET--PGEEAD 120
Query: 147 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLII-VGSITG 188
F + L +L++ L S+ I+ +
Sbjct: 121 NFTRMFSVHMLAPYLINLHCEPLLTASEVAD---IVHISDDVT 160
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 4e-15
Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 6/121 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 104
++TG SG+G A L G +++ R+ K A ++ G D+
Sbjct: 14 YLVTGGGSGIGKGVAAGLVAAG-ASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDI 72
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+ D + VD GR L +V A +E + +V N G +
Sbjct: 73 TNEDETARAVDAVTAWHGR-LHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVL 131
Query: 164 R 164
+
Sbjct: 132 K 132
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 5e-15
Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 9 AIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 67
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHF 160
+ + + T + G+ LD+LV NA +P ++ T + E ++ ++ N
Sbjct: 68 TTDAGQDEILSTTLGKFGK-LDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVI 126
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITG 188
L++ + L + ++ + SI
Sbjct: 127 ALTKKAVPHLSST---KGEIVNISSIAS 151
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 6e-15
Identities = 32/141 (22%), Positives = 53/141 (37%), Gaps = 9/141 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGA+SG+GLA AK G + + R + A G + D A+L
Sbjct: 32 AVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG---GGAVGIQADSANL 87
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ + + + +DVL NA T E ++ + N G + L
Sbjct: 88 AELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLG-EVTEEQYDDTFDRNVKGVLFTVQKAL 146
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
L + +++ GS G
Sbjct: 147 PLLARGS----SVVLTGSTAG 163
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 6e-15
Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 9/141 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+ G + G+GLAT + L E G +++ R+ R + G + D+A L
Sbjct: 11 AIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG---PRVHALRSDIADL 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ + ++ +D+L NA V + + ++ N G F + L
Sbjct: 67 NEIAVLGAAAGQTLGAIDLLHINAGVSELEPFD-QVSEASYDRQFAVNTKGAFFTVQRLT 125
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+++ ++ S+
Sbjct: 126 PLIREGG----SIVFTSSVAD 142
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 7e-15
Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 35/151 (23%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++ GAS LG A + L + +I A R + + +D+ ++
Sbjct: 6 ILLIGASGTLGSAVKERLEKKA--EVITAGR------HSGD-----------VTVDITNI 46
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
DS+++ + + +D +V + T E +++ + G L L +
Sbjct: 47 DSIKKMYEQVGK----VDAIVSATGSATFSPLT-ELTPEKNAVTISSKLGGQINLVLLGI 101
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
D L GS T T + P
Sbjct: 102 DSLNDK----------GSFT-LTTGIMMEDP 121
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 72.5 bits (179), Expect = 7e-15
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 5/116 (4%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
+TGA SG+GL +A A +G +I+ R+ +RAA+ G A + D+ +
Sbjct: 15 AVTGAGSGIGLEICRAFAASG-ARLILIDREAAALDRAAQELGAAV--AARIVADVTDAE 71
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++ + +LV +A + + + N G F SR
Sbjct: 72 AMTAAAAEAEAVAP-VSILVNSAGIARLHDAL-ETDDATWRQVMAVNVDGMFWASR 125
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGASSG+G ATA+ALA G + +A R K A ++ LD+A
Sbjct: 10 ALITGASSGIGEATARALAAEG-AAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADR 68
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V V + + LD+LV NA + + + + TN LG ++R L
Sbjct: 69 QGVDAAVASTVEALGGLDILVNNAGI-MLLGPVEDADTTDWTRMIDTNLLGLMYMTRAAL 127
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
L +S ++ + SI G N V
Sbjct: 128 PHLLRS---KGTVVQMSSIAGRVNVRNAAV 154
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 1e-14
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 7/143 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 105
++T SSGLG A+A LA G +++ R+ K E AA + + D+
Sbjct: 10 AVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIR 68
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + + R G D+LV + P E ++ S + R
Sbjct: 69 EPGDIDRLFEKARDLGGA-DILVYSTGGPRPGRFM-ELGVEDWDESYRLLARSAVWVGRR 126
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
+ + + + R++ +GS+T
Sbjct: 127 AAEQMVEKGWG--RMVYIGSVTL 147
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 71.8 bits (177), Expect = 2e-14
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
+ITG+SSG+GLA A+ A+ G HI++ R + AA+S + +D+A+
Sbjct: 10 AVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT 68
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ V V++ R S D+LV NA E ++ + L+R L
Sbjct: 69 PEGVDAVVESVRSSFGGADILVNNAGTGSNETIM-EAADEKWQFYWELLVMAAVRLARGL 127
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
+ ++ +I SI
Sbjct: 128 VPGMRARGGG--AIIHNASICA 147
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-14
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGA SG G AK A+ G +++ RD AER A G + + D++
Sbjct: 12 ALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIG---DAALAVAADISKE 67
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
V V+ + G+ +D+LV NA + E F+ VG N G +L++ L
Sbjct: 68 ADVDAAVEAALSKFGK-VDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKL 126
Query: 167 LDDLKQSDYPSKRLIIV--GSITG 188
+ K++ + +I+ S
Sbjct: 127 IPHFKENGAKGQECVILNVASTGA 150
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-14
Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 106
+ITGA+ G+G A+A A G ++++ RD + + A ++ G + + +DLA
Sbjct: 23 ALITGATKGIGADIARAFAAAG-ARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE 81
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
D+ + + LDVLV NA + P + F+ ++ N LL+
Sbjct: 82 PDAPAELARRAAEAFGGLDVLVNNAGISHPQPVV-DTDPQLFDATIAVNLRAPALLAS 138
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-14
Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 11/154 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG + +GLA ALAE G +I+A D A +A + M + + + +D+ +
Sbjct: 16 AIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNT 74
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+SV+ V + GR +D+LV A + + K T + V N G F + +
Sbjct: 75 ESVQNAVRSVHEQEGR-VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAV 133
Query: 167 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199
L+Q ++ +GS++G L N P
Sbjct: 134 GRIMLEQK---QGVIVAIGSMSG----LIVNRPQ 160
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 6e-14
Identities = 36/145 (24%), Positives = 61/145 (42%), Gaps = 13/145 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 25 LVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRT 83
Query: 109 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 164
+ + T G+ L++LV NA V + FT + + + +GTN + LS+
Sbjct: 84 ERDKLMQTVAHVFDGK-LNILVNNAGV---VIHKEAKDFTEKDYNIIMGTNFEAAYHLSQ 139
Query: 165 LLLDDLKQSDYPSKRLII-VGSITG 188
+ LK S + +I + SI G
Sbjct: 140 IAYPLLKASQNGN---VIFLSSIAG 161
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 7e-14
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 5/141 (3%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG++ GLG A A+ LA G +I+ + + + + D+
Sbjct: 13 LVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDEL 71
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
++ G +D+L+ NA + E ++ + TN FL+SR
Sbjct: 72 AIEAAFSKLDAEGIHVDILINNAGIQYRKPMV-ELELENWQKVIDTNLTSAFLVSRSAAK 130
Query: 169 DLKQSDYPSKRLII-VGSITG 188
+ + K II +GS+T
Sbjct: 131 RMIARNSGGK--IINIGSLTS 149
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 8e-14
Identities = 28/147 (19%), Positives = 51/147 (34%), Gaps = 10/147 (6%)
Query: 25 MATASPAVDVSSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRD 79
M T + SP K L S ITG +GLG L+ G ++A R
Sbjct: 1 MNTEALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLG-AQCVIASRK 59
Query: 80 FLKAERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPT 137
+ A+ + + D+ D V+ V + +G ++++ NAA +
Sbjct: 60 MDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH-PNIVINNAAGNFIS 118
Query: 138 AKEPTFTAEGFELSVGTNHLGHFLLSR 164
E + ++ G ++
Sbjct: 119 PTE-RLSPNAWKTITDIVLNGTAFVTL 144
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 8e-14
Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 10/145 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMHLDL 104
IITGAS G+G A LA G + +++ R E+ + + ++ LD+
Sbjct: 10 AIITGASQGIGAVIAAGLATDG-YRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDI 68
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ + +D+LV AA+++ + + F + N + + + +
Sbjct: 69 TDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPV--DNFRKIMEINVIAQYGILK 126
Query: 165 LLLDD-LKQSDYPSKRLIIVGSITG 188
+ + Q + + V S
Sbjct: 127 TVTEIMKVQK---NGYIFNVASRAA 148
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 9e-14
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 9/156 (5%)
Query: 38 QGKKTLRKGSVI-ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMA 93
Q K+ L +I +TGAS G+G A A G +I+ R+ K + A
Sbjct: 4 QPKQDLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGR 62
Query: 94 KENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 152
+ + I+ L + ++ +Q R LD ++ NA + + ++ +
Sbjct: 63 QPQWFILDLLTCTSENCQQLAQRIAVNYPR-LDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
Query: 153 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
N F+L++ LL L +SD S L+ S G
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDAGS--LVFTSSSVG 155
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 13/155 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHL 102
++ITGASSG G TA+ALA G + + RD E A A + + L
Sbjct: 8 ILITGASSGFGRLTAEALAGAG-HRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLEL 66
Query: 103 DLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
D+ S SV + +D GR +DVL+ NA + E FT E F N L
Sbjct: 67 DVQSQVSVDRAIDQIIGEDGR-IDVLIHNAGHMVFGPAE-AFTPEQFAELYDINVLSTQR 124
Query: 162 LSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAG 195
++R L + +Q LI + S + T
Sbjct: 125 VNRAALPHMRRQK---HGLLIWISSSSSAGGTPPY 156
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-13
Identities = 37/174 (21%), Positives = 64/174 (36%), Gaps = 11/174 (6%)
Query: 16 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 75
G + AQT S +S G+ ++TG +SG+GLATA A G +++
Sbjct: 8 HMGTLEAQTQGPGSMDGFLSGFDGRA------AVVTGGASGIGLATATEFARRG-ARLVL 60
Query: 76 ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVY 134
+ D E+A + + D+ LD + + D FR G +DV+ NA +
Sbjct: 61 SDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG-VDVVFSNAGI- 118
Query: 135 LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+ + + + + G L L + + S G
Sbjct: 119 VVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGG-HIAFTASFAG 171
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-13
Identities = 28/151 (18%), Positives = 45/151 (29%), Gaps = 13/151 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++ITGASSGLG AK G + R + + N DLAS
Sbjct: 4 IVITGASSGLGAELAKLYDAEG-KATYLTGRS---ESKLSTVTNCLSNNVGYRARDLASH 59
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V Q + +V ++A E + + N + R L+
Sbjct: 60 QEVEQLFEQLDSI---PSTVV-HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELV 115
Query: 168 DDLKQSDYPSKRLII-VGSITGNTNTLAGNV 197
K ++ + S +
Sbjct: 116 KRYKD----QPVNVVMIMSTAAQQPKAQEST 142
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 2e-13
Identities = 33/145 (22%), Positives = 50/145 (34%), Gaps = 10/145 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS--AGMAKENYTIMHLDLA 105
++TG SSG+GLAT + L E G + RD + A + D+
Sbjct: 11 AVVTGGSSGIGLATVELLLEAG-AAVAFCARDGERLRAAESALRQRFPGARLFASVCDVL 69
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
VR F + R G +LV NA + T E + + R
Sbjct: 70 DALQVRAFAEACERTLGC-ASILVNNAGQGRVSTFA-ETTDEAWSEELQLKFFSVIHPVR 127
Query: 165 LLLDDLKQSDYPSKRLII-VGSITG 188
L L+ + I+ V S+
Sbjct: 128 AFLPQLESRADAA---IVCVNSLLA 149
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 4e-13
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG G+G +A +G +++ +D + A + D+
Sbjct: 12 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELPGA----VFILCDVTQE 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
D V+ V T RR GR LD +V NA + P + +A+GF + N LG + L++L
Sbjct: 67 DDVKTLVSETIRRFGR-LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLA 125
Query: 167 LDDLKQS 173
L L++S
Sbjct: 126 LPYLRKS 132
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 4e-13
Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 17/141 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG S G+G A + L + H ++ + EN + DL
Sbjct: 7 YLVTGGSKGIGKAVVELLLQNK-NHTVINID---------IQQSFSAENLKFIKADLTKQ 56
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ +D ++ D + NA + + + E + + N + L
Sbjct: 57 QDITNVLDII-KNVS-FDGIFLNAGILIKGSIFDI-DIESIKKVLDLNVWSSIYFIKGLE 113
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
++LK ++ GS
Sbjct: 114 NNLKV----GASIVFNGSDQC 130
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 5e-13
Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITGA G+GL T++ LA G +++A AA S G +DL +
Sbjct: 14 AIITGACGGIGLETSRVLARAG-ARVVLADLPETDLAGAAASVG---RGAVHHVVDLTNE 69
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SVR +D T GR LD++ NAA P T + ++ + N G L+ +
Sbjct: 70 VSVRALIDFTIDTFGR-LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCK 127
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 6e-13
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 13/156 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGAS+G+G A A AE G + +A R + A + D+
Sbjct: 35 ALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQP 93
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 164
D VR +D G +D+ VCNA + + + E F+ TN G FL ++
Sbjct: 94 DQVRGMLDQMTGELGG-IDIAVCNAGI---VSVQAMLDMPLEEFQRIQDTNVTGVFLTAQ 149
Query: 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200
+ +I S++G N+P +
Sbjct: 150 AAARAMVDQGLGG-TIITTASMSG----HIINIPQQ 180
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 6e-13
Identities = 31/145 (21%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG S G+G + LA G + R+ + DL+S
Sbjct: 13 LVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRS 71
Query: 109 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 164
++ ++T G+ L++LV NA + + +T E + L + N + LS
Sbjct: 72 ERQELMNTVANHFHGK-LNILVNNAGI---VIYKEAKDYTVEDYSLIMSINFEAAYHLSV 127
Query: 165 LLLDDLKQSDYPSKRLII-VGSITG 188
L LK S+ + ++ + S++G
Sbjct: 128 LAHPFLKASERGN---VVFISSVSG 149
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 6e-13
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 12/159 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 101
V ITGAS G+G A A A+ G +I A + A+E
Sbjct: 48 VFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCI 107
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
+D+ + V+ ++ G +D+LV NA+ T T + +L + N G +
Sbjct: 108 VDVRDEQQISAAVEKAIKKFGG-IDILVNNASAISLTNTLDT-PTKRLDLMMNVNTRGTY 165
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 198
L S+ + LK+S ++ + N +
Sbjct: 166 LASKACIPYLKKSKVA--HILNISPPLNLNPVWFKQHCA 202
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 7e-13
Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+TG+S G+G A A+A A+ G + + E+A + +++
Sbjct: 37 ASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDP 95
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAV-YLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
SV + + + G +DV V NA V + + + + + + G + S
Sbjct: 96 KSVEETISQQEKDFGT-IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHN 154
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
+ K++ S LII SI+G N+P
Sbjct: 155 IGKIFKKNGKGS--LIITSSISG----KIVNIP 181
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 66.7 bits (164), Expect = 7e-13
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 5/142 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++T ++ G+GLA A+ LA+ G H++++ R +R + + T +
Sbjct: 17 ALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKA 75
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ + V G +D+LV NAAV T E ++ + N L+++ +
Sbjct: 76 EDRERLVAMAVNLHGG-VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAV 134
Query: 167 LDDLKQSDYPSKRLIIVGSITG 188
+ ++++ S ++IV S+
Sbjct: 135 VPEMEKRGGGS--VLIVSSVGA 154
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 8e-13
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 9 VIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 67
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT---FTAEGFELSVGTNHLGHF 160
+ D Q ++ T ++ G+ +DVLV NA +P A T + + ++ N
Sbjct: 68 TTEDGQDQIINSTLKQFGK-IDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVI 126
Query: 161 LLSRLLLDDLKQS 173
+++ + L S
Sbjct: 127 EMTKKVKPHLVAS 139
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH-LDLAS 106
ITG SG+G A+ G H ++A R + AA+ A + +D+ +
Sbjct: 30 AFITGGGSGIGFRIAEIFMRHG-CHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA 88
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+V VD + GR +D+L+ AA + F+ + + G F +SR
Sbjct: 89 PPAVMAAVDQALKEFGR-IDILINCAAGNFLCPAG-ALSFNAFKTVMDIDTSGTFNVSR 145
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 38/159 (23%), Positives = 56/159 (35%), Gaps = 12/159 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 101
+ ITGAS G+GLA A A G I A + A +
Sbjct: 9 LFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALK 68
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
D+ D VR V T G +D+LV NA+ T + F+L N G F
Sbjct: 69 CDIREEDQVRAAVAATVDTFGG-IDILVNNASAIWLRGTLDT-PMKRFDLMQQVNARGSF 126
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVP 198
+ ++ L L Q+ P ++ + N +
Sbjct: 127 VCAQACLPHLLQAPNP--HILTLAPPPSLNPAWWGAHTG 163
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 11/158 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE------NYTIMH 101
+ I+G S G+GLA AK +A G ++A + AKE +
Sbjct: 12 MFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIV 71
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
D+ D+V V T + G +D+ V NA+ + E + F+L G G +
Sbjct: 72 GDIRDGDAVAAAVAKTVEQFGG-IDICVNNASAINLGSIE-EVPLKRFDLMNGIQVRGTY 129
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
+S+ + +K D P ++ + P
Sbjct: 130 AVSQSCIPHMKGRDNP--HILTLSPPIRLEPKWLRPTP 165
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 45/191 (23%), Positives = 60/191 (31%), Gaps = 38/191 (19%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ ITG++SG+G A + LA G +I R DL++
Sbjct: 4 IAITGSASGIGAALKELLARAG-HTVIGIDRG---QADIEA--------------DLSTP 45
Query: 108 DSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
V R G LD LVC A V TA L V N+ G L L
Sbjct: 46 GGRETAVAAVLDRCGGVLDGLVCCAGV--------GVTAANSGLVVAVNYFGVSALLDGL 97
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 226
+ L + P+ V ++A P A L + G G
Sbjct: 98 AEALSRGQQPA----AV-----IVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQG- 147
Query: 227 FDGAKAYKDSK 237
AY SK
Sbjct: 148 -QTHLAYAGSK 157
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-12
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 9/126 (7%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
+G+ I++G + GLG AT + L G +++A K + A G + +
Sbjct: 29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELG---NRAEFVSTN 84
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGH 159
+ S DSV ++ + GR +V + + GF ++ G
Sbjct: 85 VTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGT 144
Query: 160 FLLSRL 165
+ ++RL
Sbjct: 145 YNVARL 150
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 1e-12
Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 10 CLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 68
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++V VD R G+ +D L NA A + ++ F + N G F + +
Sbjct: 69 EAVIGTVDSVVRDFGK-IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLK 125
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
+ +V ++TG +SGLGLAT K L + G +++ D ++ E G + D
Sbjct: 8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVL---D-IRGEDVVADLG---DRARFAAAD 60
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 160
+ +V +D G L ++V A +++ F+ F V N +G F
Sbjct: 61 VTDEAAVASALDLAETMG-TLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSF 119
Query: 161 LLSRL 165
+ RL
Sbjct: 120 NVLRL 124
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 37/157 (23%), Positives = 64/157 (40%), Gaps = 11/157 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 105
+ITG++SG+GLA A+ LA+ G +I++ R + T++H D+
Sbjct: 28 AVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMT 86
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + D+LV NA V K F E ++ + N F R
Sbjct: 87 KPSEIADMMAMVADRFGGADILVNNAGVQ-FVEKIEDFPVEQWDRIIAVNLSSSFHTIRG 145
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202
+ +K+ + R+I + S G L + P K+
Sbjct: 146 AIPPMKKKGW--GRIINIASAHG----LVAS-PFKSA 175
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 29 VIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 87
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 162
++ T + G+ +D+LV NA L T E ++ + N +
Sbjct: 88 TEASGQDDIINTTLAKFGK-IDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 146
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITG 188
++ + L ++ ++ V SI
Sbjct: 147 TQKTKEHLIKT---KGEIVNVSSIVA 169
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 27/146 (18%), Positives = 50/146 (34%), Gaps = 13/146 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG +SGLG A G + + + + + G N + D+ SL
Sbjct: 8 ALITGGASGLGRALVDRFVAEG-ARVAVLDKSAERLRELEVAHG---GNAVGVVGDVRSL 63
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLL 162
++ + G+ +D L+ NA ++ + F+ N G+
Sbjct: 64 QDQKRAAERCLAAFGK-IDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHA 122
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITG 188
+ L L S ++ S G
Sbjct: 123 VKACLPALVSS---RGSVVFTISNAG 145
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 2e-12
Identities = 38/141 (26%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
M T L I+TGA +G+GLA A+ LA+ G H++ A D A+
Sbjct: 9 MGTLEAQTQGPGSMNHPDLAGKVAIVTGAGAGIGLAVARRLADEG-CHVLCADIDGDAAD 67
Query: 85 RAAKSAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 143
AA G +D++ + VD G +D LV NA V +
Sbjct: 68 AAATKIG---CGAAACRVDVSDEQQIIAMVDACVAAFGG-VDKLVANAGVVHLASLI-DT 122
Query: 144 TAEGFELSVGTNHLGHFLLSR 164
T E F+ + N G +L ++
Sbjct: 123 TVEDFDRVIAINLRGAWLCTK 143
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 65.7 bits (161), Expect = 2e-12
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGA SG+G A A A G H++ R + A + + DLA L+
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGA-HVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLE 92
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ + R +DVLV NA + E + + + N ++LSR
Sbjct: 93 GAANVAEELAATRR-VDVLVNNAGIIARAPAE-EVSLGRWREVLTVNLDAAWVLSR 146
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-12
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 10/127 (7%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
KG V +ITG +SGLGLATA+ L G ++ E AK G N D
Sbjct: 11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPAD 66
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAV-----YLPTAKEPTFTAEGFELSVGTNHLG 158
+ S V+ + + +DV V A + K T T E F+ + N +G
Sbjct: 67 VTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMG 126
Query: 159 HFLLSRL 165
F + RL
Sbjct: 127 TFNVIRL 133
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 3e-12
Identities = 33/148 (22%), Positives = 53/148 (35%), Gaps = 14/148 (9%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG + G+G A + A G I R+ + T D +
Sbjct: 18 LVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRP 76
Query: 109 SVRQFVDTFRRS-GRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSRL 165
+ + T G LD+L+ N +PT +TAE F + TN + LS+L
Sbjct: 77 EREKLMQTVSSMFGGKLDILINNLGA---IRSKPTLDYTAEDFSFHISTNLESAYHLSQL 133
Query: 166 LLDDLKQSDYPSKRLII----VGSITGN 189
LK S + II + +
Sbjct: 134 AHPLLKASGCGN---IIFMSSIAGVVSA 158
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-12
Identities = 28/145 (19%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITGA+ GLG A A+AL G ++++ R A+ G + DLA
Sbjct: 3 VLITGATGGLGGAFARALK--G-HDLLLSGRRAGALAELAREVGA-----RALPADLADE 54
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ ++ LD+LV + + E + + L + +L
Sbjct: 55 LEAKALLEEAGP----LDLLVHAVGKAGRASVR-EAGRDLVEEMLAAH----LLTAAFVL 105
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNT 192
+ R + G+
Sbjct: 106 KHARFQKGA--RAVFFGAYPRYVQV 128
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 4e-12
Identities = 30/151 (19%), Positives = 52/151 (34%), Gaps = 13/151 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ D + G+ +D+LV NA P + F + N F LS+L+
Sbjct: 73 QELSALADFAISKLGK-VDILVNNAGGGGPKPFD--MPMADFRRAYELNVFSFFHLSQLV 129
Query: 167 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 196
+ K ++ + S+ N
Sbjct: 130 APEMEKNG---GGVILTITSMAA----ENKN 153
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 8/125 (6%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
K V I+TGASSGLG A + LA+ G ++ E A G + D
Sbjct: 6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELG---AAVRFRNAD 61
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHF 160
+ + + ++ + LV A + + F +V N +G F
Sbjct: 62 VTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTF 121
Query: 161 LLSRL 165
+ RL
Sbjct: 122 NMIRL 126
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 5e-12
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 50 ITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS 109
+TGASSG G A A+A G +I R E + + LD+ +
Sbjct: 10 VTGASSGFGRAIAEAAVAAG-DTVIGTARR---TEALDDLVAAYPDRAEAISLDVTDGER 65
Query: 110 VRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
+ R GR +DVLV NA A E T + G L+R LL
Sbjct: 66 IDVVAADVLARYGR-VDVLVNNAGRTQVGAFE-ETTERELRDLFELHVFGPARLTRALLP 123
Query: 169 DL-KQSDYPSKRLIIVGSITG 188
+ ++ S ++ + S G
Sbjct: 124 QMRERG---SGSVVNISSFGG 141
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 36/166 (21%), Positives = 68/166 (40%), Gaps = 14/166 (8%)
Query: 35 SSPQGKKTLRKGS-----VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK- 88
S +G+ L G I+TG ++G+G A K L E G ++++A R + + AA
Sbjct: 3 SWAKGRSYLAPGLLQGQVAIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADE 61
Query: 89 ----SAGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF 143
+ + ++ + + V V T G+ ++ LV N + E
Sbjct: 62 LQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGK-INFLVNNGGGQFLSPAE-HI 119
Query: 144 TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189
+++G+ + TN G F + + + + S IIV + G
Sbjct: 120 SSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKAGF 165
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 7e-12
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Query: 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
TL+ + ++TG++SG+GL A+ LA G +I++ F A
Sbjct: 1 TLKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLN--GFGDPAPALAEIARHGVKAVHHP 57
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
DL+ + + R +D+LV NA + A F E ++ + N F
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQ-HVAPVEQFPLESWDKIIALNLSAVFH 116
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202
+RL L ++ ++ R+I + S+ G L G+ KA
Sbjct: 117 GTRLALPGMRARNW--GRIINIASVHG----LVGS-TGKAA 150
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 7e-12
Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG SG+G ATA+ A+ G ++++A + A R A G + +D++S
Sbjct: 30 CIVTGGGSGIGRATAELFAKNG-AYVVVADVNEDAAVRVANEIG---SKAFGVRVDVSSA 85
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V+ T + GR +DVLV NA T E ++ + N G FL S+
Sbjct: 86 KDAESMVEKTTAKWGR-VDVLVNNAGFGTTGNVV-TIPEETWDRIMSVNVKGIFLCSK 141
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 9e-12
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 106
I+TGASSG GLA A G + E A++ A + + D+A
Sbjct: 5 AIVTGASSGNGLAIATRFLARG-DRVAALDLSAETLEETARTHWHAYADKVLRVRADVAD 63
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS 163
V + T + G +DVLV NA + + T E F+ + N G FL
Sbjct: 64 EGDVNAAIAATMEQFGA-IDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGC 122
Query: 164 R 164
R
Sbjct: 123 R 123
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 9e-12
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VIITG SSG+G A A+ G +++ R K E A + +D+ +
Sbjct: 9 VIITGGSSGMGKGMATRFAKEG-ARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNT 67
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
D +++ ++ + GR +D+L+ NAA E + G+ + G F S+
Sbjct: 68 DDIQKMIEQIDEKFGR-IDILINNAAGNFICPAE-DLSVNGWNSVINIVLNGTFYCSQ 123
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 9e-12
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 11/157 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHL--DLA 105
++TG++SG+GL A ALA G I++ ++ A+ +++ DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLS 65
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
++VR VD R +D+LV NA + E F E ++ + N F +
Sbjct: 66 KGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIE-DFPTEKWDAILALNLSAVFHGTAA 124
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202
L +K+ + R+I + S G L + K+
Sbjct: 125 ALPHMKKQGF--GRIINIASAHG----LVAS-ANKSA 154
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 9e-12
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 10/143 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLA 105
++TG+++G+G A A +L G ++++ R K A + DL
Sbjct: 13 ALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLG 71
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + ++ + + +D+L+ N ++ P E + N + L+R
Sbjct: 72 TEQGCQDVIEKY---PK-VDILINNLGIFEPVEYF-DIPDEDWFKLFEVNIMSGVRLTRS 126
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
L + + R+I + S
Sbjct: 127 YLKKMIERKEG--RVIFIASEAA 147
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 13/144 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL-AS 106
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 107 LDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ ++ + F + +D+L+ A + E ++ N G +
Sbjct: 68 VAESKKLLKKIFDQLKT-VDILINGAGI---------LDDHQIERTIAINFTGLVNTTTA 117
Query: 166 LLDDLKQSDYPSKRLII-VGSITG 188
+LD + +I + S+TG
Sbjct: 118 ILDFWDKRKGGPGGIIANICSVTG 141
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
D + D T + G + LV NA + + + E T + + N G F +RL
Sbjct: 67 DGWTKLFDATEKAFGP-VSTLVNNAGIAVNKSVE-ETTTAEWRKLLAVNLDGVFFGTRLG 124
Query: 167 LDDLKQSDYPSKRLII-VGSITG 188
+ +K + II + SI G
Sbjct: 125 IQRMKNKGLGAS--IINMSSIEG 145
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG+ G+G A A+ALA G +++A + AE AK + +D++
Sbjct: 12 GIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDP 70
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTF--TAEGFELSVGTNHLGHFLLSR 164
+S + D T G +D LV NAA++ + E ++ + N G +R
Sbjct: 71 ESAKAMADRTLAEFGG-IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTR 129
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 1e-11
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 5/116 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 19 AIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 76
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFL 161
+ VR VD T + G+ LD++ N V T E F+ + N G FL
Sbjct: 77 EDVRNLVDTTIAKHGK-LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 1e-11
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASL 107
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 25 LVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNY 83
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 164
+ V++ ++ + LD +V A + + P F + F + N G + + R
Sbjct: 84 EEVKKLLEAVKEKFGKLDTVVNAAGI---NRRHPAEEFPLDEFRQVIEVNLFGTYYVCR 139
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 62.9 bits (154), Expect = 2e-11
Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 105
V+ITG SGLG ATA LA G + + E + + + ++ D++
Sbjct: 16 VLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 74
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V +V T R GR +D NA + +FTA F+ V N G FL
Sbjct: 75 DEAQVEAYVTATTERFGR-IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLE 133
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 2e-11
Identities = 41/194 (21%), Positives = 64/194 (32%), Gaps = 21/194 (10%)
Query: 9 LQREFSQRNGVVRAQTMATASPAVDVSSPQGK----KTLRKGSVIITGASSGLGLATAKA 64
+ G + AQT S V S+ + L SV++TG + G+G A
Sbjct: 1 MAHHHHHHMGTLEAQTQGPGSMLVVESAEPAERKVMFDLSARSVLVTGGTKGIGRGIATV 60
Query: 65 LAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124
A G + A + A+ + N + LD++ S T + L
Sbjct: 61 FARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFGAL 120
Query: 125 DVLVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKR 179
DV+ NA ++ L T E + N G + L R
Sbjct: 121 DVVCANAGIFPEARLDTMTP-----EQLSEVLDVNVKGTVYTVQACLAPLTASG---RGR 172
Query: 180 LI----IVGSITGN 189
+I I G +TG
Sbjct: 173 VILTSSITGPVTGY 186
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 2e-11
Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 10/118 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 9 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGGAF------FQVDLEDE 61
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+FV+ GR +DVLV NAA+ P + + + N LS
Sbjct: 62 RERVRFVEEAAYALGR-VDVLVNNAAIAAPGSALTV-RLPEWRRVLEVNLTAPMHLSA 117
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 2e-11
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 19/152 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+T A+ G+G A A A A G +I + K + K G+ LD+
Sbjct: 9 IILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQ-----TRVLDVTKK 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ QF + R LDVL A + ++ S+ N +L+ + L
Sbjct: 63 KQIDQFANEVER----LDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 168 DDLKQSDYPSKRLII-----VGSITGNTNTLA 194
+ + II S+ G N
Sbjct: 118 PKMLAQKSGN---IINMSSVASSVKGVVNRCV 146
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 3e-11
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ RR G L+VLV NA + LP E T E F + N F+
Sbjct: 65 ADWTLVMAAVQRRLGT-LNVLVNNAGILLPGDME-TGRLEDFSRLLKINTESVFI 117
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 3e-11
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ ++ V G +D LV NA + E T + E F V N G F+
Sbjct: 64 EDWQRVVAYAREEFGS-VDGLVNNAGISTGMFLE-TESVERFRKVVEINLTGVFI 116
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 28/118 (23%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TGASSG+G A A A G +++ R+ + D+
Sbjct: 11 AIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDE 69
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V+ RR G LD NA + + + EG+ ++ TN FL ++
Sbjct: 70 ALHEALVELAVRRFGG-LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAK 126
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 4e-11
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 14/118 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG SSG+GLA AL G ++ D + +D+ +
Sbjct: 17 AIVTGGSSGIGLAVVDALVRYG-AKVVSVSLDEKSDVNVSDH----------FKIDVTNE 65
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ V++ V+ T ++ GR +D+LV NA + + E + + N G +L+++
Sbjct: 66 EEVKEAVEKTTKKYGR-IDILVNNAGIEQYSPLH-LTPTEIWRRIIDVNVNGSYLMAK 121
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 6e-11
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG++ G+G A A+A G + +A D +A +AA G + +D+
Sbjct: 11 ALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG---PAAYAVQMDVTRQ 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
DS+ + T +G LD+LV NAA++ A T E +E N G +
Sbjct: 67 DSIDAAIAATVEHAGG-LDILVNNAALF-DLAPIVEITRESYEKLFAINVAGTLFTLQ 122
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 6e-11
Identities = 38/159 (23%), Positives = 63/159 (39%), Gaps = 9/159 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG+S G+GLATA+ A G + + + S + DLA+
Sbjct: 10 VLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATS 69
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
++ +Q VD + G +DVL+ NA + P ++ + N + ++
Sbjct: 70 EACQQLVDEFVAKFGG-IDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFA 128
Query: 167 LDDLKQSDYPSKRL--II-VGSITGNTNTLAGNVPPKAN 202
L L + S + +I GSI G G P
Sbjct: 129 LPHLAAAAKASGQTSAVISTGSIAG----HTGGGPGAGL 163
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYT 98
K + +TG ++G+G+ + L G + +A ++A A +
Sbjct: 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVM 62
Query: 99 IMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 133
+ LD+AS + + D R G + +L NA V
Sbjct: 63 GVQLDVASREGFKMAADEVEARFGP-VSILCNNAGV 97
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 1e-10
Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VI+TGA SG+G A AK A ++ + + + + + D++
Sbjct: 10 VIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKK 68
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V +FV TF R +DVL NA + + E +E + N F SR
Sbjct: 69 KDVEEFVRRTFETYSR-IDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSR 125
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 29/118 (24%), Positives = 41/118 (34%), Gaps = 15/118 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G A AL G + +A R A + DL
Sbjct: 31 ALVTGAAGGIGGAVVTALRAAG-ARVAVADRA---VAGIAADLHLP--------GDLREA 78
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
GR LD++V NA V T + LS+G N F + R
Sbjct: 79 AYADGLPGAVAAGLGR-LDIVVNNAGVISRGRIT-ETTDADWSLSLGVNVEAPFRICR 134
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 1e-10
Identities = 19/119 (15%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++T A G A +AL + G + ++ F A + +
Sbjct: 5 LVTHARHFAGPAAVEALTQDG-YTVVCHDASFADAAERQRFESEN------PGTIALAEQ 57
Query: 109 SVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLSR 164
+ VD T + +D +V N + P + P + + LL +
Sbjct: 58 KPERLVDATLQHGEA-IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQ 115
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 1e-10
Identities = 31/171 (18%), Positives = 55/171 (32%), Gaps = 5/171 (2%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
MA ++ K L + TGA G+G A L G ++ AE
Sbjct: 1 MAPSADITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAE 60
Query: 85 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT 144
+ D++ V D LD ++ N+ + + + T
Sbjct: 61 EVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEV-T 119
Query: 145 AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195
E F+ N G F +++ L ++ R+I+ SI +
Sbjct: 120 QELFDKVFNLNTRGQFFVAQQGLKHCRRGG----RIILTSSIAAVMTGIPN 166
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
Query: 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN 96
P+G R + +TG SSG+GLA A+ LA G + RD A A +
Sbjct: 16 PRGSHMSRPQTAFVTGVSSGIGLAVARTLAARG-IAVYGCARDAKNVSAAVDGLRAAGHD 74
Query: 97 YTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
D+ S D V V P+ +LV +A
Sbjct: 75 VDGSSCDVTSTDEVHAAVAAAVERFGPIGILVNSA 109
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 2e-10
Identities = 27/87 (31%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A+ L G +++ RD K + A DL+
Sbjct: 32 AVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHS 90
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAV 133
D++ F GR DVLV NA V
Sbjct: 91 DAIAAFATGVLAAHGR-CDVLVNNAGV 116
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 2e-10
Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++G + G+G + +A+ G ++ + + A + +HLD+
Sbjct: 10 ALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQP 65
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ VD G L VLV NA + E + ++ + N G FL
Sbjct: 66 AQWKAAVDTAVTAFGG-LHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFL 118
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 48 VIITGASSGLGLATAKALAETG------KWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
++ITGA G+G A A A + ++++ R E+ + +
Sbjct: 5 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 64
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAV 133
D++ + VR+ R G +D LV NA V
Sbjct: 65 ADISDMADVRRLTTHIVERYGH-IDCLVNNAGV 96
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 3e-10
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGA SG+G ATA ALA G + R + E A A + D++
Sbjct: 31 ALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDE 89
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+R V + G LD++V NA + A ++ ++ N G FL
Sbjct: 90 LQMRNAVRDLVLKFGH-LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLH 146
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 3e-10
Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 13/151 (8%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TGA++G+G A A A+ G +++ AE A + A + ++
Sbjct: 15 AIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDE 73
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ + G+ + VLV NA P + FE + N F LS+L
Sbjct: 74 QHREAVIKAALDQFGK-ITVLVNNAGGGGPKPFD--MPMSDFEWAFKLNLFSLFRLSQLA 130
Query: 167 LDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 196
K ++ + S+ G N
Sbjct: 131 APHMQKAG---GGAILNISSMAG----ENTN 154
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 4e-10
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 7/146 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG + G+G A A G + A + + D++
Sbjct: 13 VVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDR 72
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+DV+ NA V+ P A T T E N G F + L
Sbjct: 73 AQCDALAGRAVEEFGGIDVVCANAGVF-PDAPLATMTPEQLNGIFAVNVNGTFYAVQACL 131
Query: 168 DDLKQSDYPSKRLI----IVGSITGN 189
D L S R++ I G ITG
Sbjct: 132 DALIASGSG--RVVLTSSITGPITGY 155
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 6e-10
Identities = 33/153 (21%), Positives = 59/153 (38%), Gaps = 19/153 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM--HLDLA 105
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 10 ALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 68
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+R GR LD+LV NA V + +E ++ N + +
Sbjct: 69 DQQQLRDTFRKVVDHFGR-LDILVNNAGV---------NNEKNWEKTLQINLVSVISGTY 118
Query: 165 LLLDDLKQSDYPSKRLII-VGSITGNTNTLAGN 196
L LD + + + +II + S+ G L
Sbjct: 119 LGLDYMSKQNGGEGGIIINMSSLAG----LMPV 147
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 6e-10
Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG S G+G A A+AL + G + +A D A + + +D+
Sbjct: 15 AIVTGGSKGIGAAIARALDKAG-ATVAIADLD---VMAAQAVVAGLENGGFAVEVDVTKR 70
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
SV + G D+L NA V T E ++ + N G FL ++
Sbjct: 71 ASVDAAMQKAIDALGG-FDLLCANAGVS-TMRPAVDITDEEWDFNFDVNARGVFLANQ 126
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 7e-10
Identities = 34/157 (21%), Positives = 59/157 (37%), Gaps = 21/157 (13%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKE 95
+ +K ++TG SG+G A A A A G + + +L AE A + + +E
Sbjct: 48 KDRK------ALVTGGDSGIGRAAAIAYAREG-ADVAIN---YLPAEEEDAQQVKALIEE 97
Query: 96 ---NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELS 151
++ DL+ R V G LD+L A + T+E F+ +
Sbjct: 98 CGRKAVLLPGDLSDESFARSLVHKAREALGG-LDILALVAGKQTAIPEIKDLTSEQFQQT 156
Query: 152 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
N F +++ + L + +I SI
Sbjct: 157 FAVNVFALFWITQEAIPLLPKGA----SIITTSSIQA 189
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 17/122 (13%)
Query: 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS 106
S ++TG +SGLG A A AL G + +++ D L+ E + D+
Sbjct: 4 SALVTGGASGLGRAAALALKARG-YRVVVL--D-LRREGEDLIY---------VEGDVTR 50
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLS 163
+ VR+ V + PL +V A V L KE E F + N LG F +
Sbjct: 51 EEDVRRAVARAQEEA-PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVL 109
Query: 164 RL 165
RL
Sbjct: 110 RL 111
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 15/118 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VI+TGAS G+G A A+ + G +I + + D+ +
Sbjct: 11 VIVTGASMGIGRAIAERFVDEG-SKVIDLSIH----DPGEAKY-------DHIECDVTNP 58
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
D V+ +D F+ G + VLV NA + E + + + + N G++ S+
Sbjct: 59 DQVKASIDHIFKEYGS-ISVLVNNAGIESYGKIE-SMSMGEWRRIIDVNLFGYYYASK 114
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 56.7 bits (138), Expect = 1e-09
Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 15/118 (12%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TG S G+G A A+AL G + + +A R+ +A ++ + + DL D
Sbjct: 6 LVTGGSRGIGRAIAEALVARG-YRVAIASRNPEEAAQSLGAVPLP--------TDL-EKD 55
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT--FTAEGFELSVGTNHLGHFLLSR 164
+ V + L VLV AAV ++P + E + + + FLL++
Sbjct: 56 DPKGLVKRALEALGGLHVLVHAAAV---NVRKPALELSYEEWRRVLYLHLDVAFLLAQ 110
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-09
Identities = 25/149 (16%), Positives = 45/149 (30%), Gaps = 15/149 (10%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+T G+ +A L+E G + F + + A L S
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETY------PQLKPMSEQ 57
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
+ ++ + +DVLV N + E + +V + F L +
Sbjct: 58 EPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVAS 117
Query: 169 D-LKQSDYPSKRLIIVGSITGNTNTLAGN 196
K+ S +I + S T
Sbjct: 118 QMKKRK---SGHIIFITSATP----FGPW 139
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 25 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 83
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ V P+DVLV NA
Sbjct: 84 PEIEALVAAVVERYGPVDVLVNNA 107
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-09
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 14/158 (8%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++TGAS G+G A L + G + + R A+ A + D +
Sbjct: 9 VVTGASRGIGRGIALQLCKAG-ATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQES 67
Query: 109 SVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTF------TAEGFELSVGTNHLGHF 160
VR + R GR LDVLV NA + T A ++ GH+
Sbjct: 68 EVRSLFEQVDREQQGR-LDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHY 126
Query: 161 LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198
S + + ++++ S NVP
Sbjct: 127 FCSVYGARLMVPA--GQGLIVVISSPGSLQY--MFNVP 160
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-09
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 35 SSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA 93
+ QG +++ V +TG GLG A ++ L + G + A
Sbjct: 14 AQTQGPGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA 73
Query: 94 KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
++ +D+A +S + + +DVL+ NA
Sbjct: 74 GRDFKAYAVDVADFESCERCAEKVLADFGKVDVLINNA 111
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 39/185 (21%), Positives = 68/185 (36%), Gaps = 19/185 (10%)
Query: 19 VVRAQTMATASPAVDVSSPQGKKTLR-KGSV-IITGASSGLGLATAKALAETGKWHIIMA 76
+ S + P G ++ +G V ++TGA G+G A L G I+
Sbjct: 1 MPAVTQPRGESKYDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNY 60
Query: 77 CRDFLKAE---RAAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCN 130
AE A K G + ++ ++ + + + + LD++ N
Sbjct: 61 ANSTESAEEVVAAIKKNGSDAAC------VKANVGVVEDIVRMFEEAVKIFGKLDIVCSN 114
Query: 131 AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190
+ V + T E F+ N G F ++R L+ RLI++GSITG
Sbjct: 115 SGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAREAYKHLEIGG----RLILMGSITGQA 169
Query: 191 NTLAG 195
+
Sbjct: 170 KAVPK 174
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 36/155 (23%), Positives = 56/155 (36%), Gaps = 12/155 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG G+GL A+ALA +G I D + DLA L
Sbjct: 32 AIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADL 91
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP----TFTAEGFELSVGTNHLGHFLLS 163
S + VD +D LV NA + + E F+ VG N G +
Sbjct: 92 SSHQATVDAVVAEFGRIDCLVNNAGI---ASIVRDDFLDLKPENFDTIVGVNLRGTVFFT 148
Query: 164 RLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ +L L S+ +I + S++ + +
Sbjct: 149 QAVLKAMLASDARASRSIINITSVSA----VMTSP 179
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 4e-09
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 14/144 (9%)
Query: 29 SPAVDVSSP--QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-- 84
S VD+ + + V++TG S G+G A + A G + + A+
Sbjct: 8 SSGVDLGTENLYFQSMSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAV 67
Query: 85 -RAAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 140
A +G +A + D+ + + R LD LV NA + +
Sbjct: 68 VAAITESGGEAVA------IPGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRV 121
Query: 141 PTFTAEGFELSVGTNHLGHFLLSR 164
+ E E + N G L +
Sbjct: 122 DEMSVERIERMLRVNVTGSILCAA 145
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 4e-09
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITGASSG+G A A+ L + G II E+ K+NYTI +LA+
Sbjct: 17 SLITGASSGIGSAIARLLHKLGSKVIISGSN----EEKLKSLGNALKDNYTIEVCNLANK 72
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ + LD+LVCNA
Sbjct: 73 EECSNLISKT---SN-LDILVCNA 92
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 39/197 (19%), Positives = 73/197 (37%), Gaps = 21/197 (10%)
Query: 5 IEFTLQREFSQRNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKA 64
+E T++ S ++ V Q + + K L ++TGA+ G+G A+
Sbjct: 174 LESTMRFILSAKSAYVDGQVFRVGAADSTPPADW-DKPLDGKVAVVTGAARGIGATIAEV 232
Query: 65 LAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR-RSGRP 123
A G + + K T + LD+ + D+V + G
Sbjct: 233 FARDGATVVAIDVD----GAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGK 288
Query: 124 LDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFLLSRLLLD-DLKQSDYPSKR 179
+D+LV NA + T ++ + ++ + N L L+ L+ R
Sbjct: 289 VDILVNNAGI---T-RDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIG---EGGR 341
Query: 180 LIIVGSITGNTNTLAGN 196
+I + S+ G +AGN
Sbjct: 342 VIGLSSMAG----IAGN 354
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 5e-09
Identities = 18/106 (16%), Positives = 38/106 (35%), Gaps = 9/106 (8%)
Query: 27 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86
TA+ V + +++ ++ + +G+ +A LA G +++ R KA+ A
Sbjct: 101 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAA 159
Query: 87 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
A S + + + A S + V + A
Sbjct: 160 ADSVN-KRFKVNVTAAETADDASRAEAVKG-------AHFVFTAGA 197
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 6e-09
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA---KSAGMAKENYTIMH--- 101
++TGA SG+G A + LA G + D A+ G + H
Sbjct: 10 ALVTGAGSGIGRAVSVRLAGEG-ATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAF 68
Query: 102 -LDLASLDSVRQFVDTFR-RSGRPLDVLVCNA 131
D++ + R ++ + RP V+V A
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCA 100
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 6e-09
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA G+G A A L + G + +A + A+ A A + + +D++
Sbjct: 5 ALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDR 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
D V V+ R++ DV+V NA V P+ + T E + N G +
Sbjct: 64 DQVFAAVEQARKTLGGFDVIVNNAGVA-PSTPIESITPEIVDKVYNINVKGVIWGIQ 119
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 8e-09
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A ALA G ++ AE+ S + L+++ +
Sbjct: 8 ALVTGASRGIGFEVAHALASKG-ATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDI 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+S++ F + +D+LV NA
Sbjct: 67 ESIQNFFAEIKAENLAIDILVNNA 90
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 9e-09
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 4/84 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++TGA+SG+G A A G ++ R+ A + + D++
Sbjct: 9 ILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDP 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+V L + A
Sbjct: 65 KAVEAVFAEALEEFGRLHGVAHFA 88
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V +TGA G+G ATA A E G + + F + + + +D+A
Sbjct: 10 VWVTGAGKGIGYATALAFVEAG-AKVTGFDQAFTQEQYPFAT----------EVMDVADA 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAV 133
V Q LD LV A +
Sbjct: 59 AQVAQVCQRLLAETERLDALVNAAGI 84
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 26/159 (16%), Positives = 53/159 (33%), Gaps = 16/159 (10%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDL 104
+++ GA +G A A A+ G ++++ AE AA + ++ + + DL
Sbjct: 11 IVVAGAGRDIGRACAIRFAQEG-ANVVLTYNG--AAEGAATAVAEIEKLGRSALAIKADL 67
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
+ V + + G + LV A + + + N FL +
Sbjct: 68 TNAAEVEAAISAAADKFGE-IHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTA 126
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202
+ L + + ++ S G G P
Sbjct: 127 KTALPKMAKGG----AIVTFSSQAG----RDGGGPGALA 157
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 36/173 (20%), Positives = 63/173 (36%), Gaps = 18/173 (10%)
Query: 30 PAVDVSSPQGKKTLRKGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---R 85
P V+ +S G V ++TG+ G+G A A L G ++ AE
Sbjct: 2 PHVENASETYIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVS 61
Query: 86 AAKSAG---MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT 142
K+ G +A + D+ + + + D LD+ V N+ V +
Sbjct: 62 EIKALGSDAIA------IKADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLK-D 114
Query: 143 FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195
T E F+ N G F ++R L + R+++ S T ++
Sbjct: 115 VTEEEFDRVFSLNTRGQFFVAREAYRHLTE----GGRIVLTSSNTSKDFSVPK 163
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 35/161 (21%), Positives = 62/161 (38%), Gaps = 19/161 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+TG + G+GLA +A+A G ++ E K D+++
Sbjct: 17 IIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNT 76
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLGHFLLS- 163
D V + + G + L+ NA V + +P T E F N G F
Sbjct: 77 DIVTKTIQQIDADLGP-ISGLIANAGV---SVVKPATELTHEDFAFVYDVNVFGVFNTCR 132
Query: 164 ---RLLLDDLKQSDYPSKRLIIVGSITG---NTNTLAGNVP 198
+L L KQ +++ S++ N ++L G++
Sbjct: 133 AVAKLWLQ--KQQ---KGSIVVTSSMSSQIINQSSLNGSLT 168
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITGAS G+G +A + + ++ + A + + D++
Sbjct: 31 VVITGASQGIGAGLVRAYRDRN-YRVVAT---------SRSIKPSADPDIHTVAGDISKP 80
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNA 131
++ + V R GR +D LV NA
Sbjct: 81 ETADRIVREGIERFGR-IDSLVNNA 104
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 38/153 (24%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 102
++TGAS G+G A AK LA G I +AE +S G + +
Sbjct: 11 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFS------IGA 64
Query: 103 DLASLDSVRQFVDTFRR-------SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTN 155
+L SL V + S + D+L+ NA + E T T + F+ V N
Sbjct: 65 NLESLHGVEALYSSLDNELQNRTGSTK-FDILINNAGIGPGAFIEET-TEQFFDRMVSVN 122
Query: 156 HLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
F + + L L+ + R+I + S
Sbjct: 123 AKAPFFIIQQALSRLRDNS----RIINISSAAT 151
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 2e-08
Identities = 37/140 (26%), Positives = 53/140 (37%), Gaps = 5/140 (3%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
I+TGAS G+G A A LA G +I AE A A D++
Sbjct: 31 IVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPA 90
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
+VR+ T + +DVLV NA + T T F+ + N G F R
Sbjct: 91 AVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAET-GDAVFDRVIAVNLKGTFNTLREAAQ 149
Query: 169 DLKQSDYPSKRLIIVGSITG 188
L+ R+I + +
Sbjct: 150 RLRVGG----RIINMSTSQV 165
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 26/178 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 95
V++TG + G G + A LAE G II+ C D E ++ +E
Sbjct: 13 VLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGR 71
Query: 96 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 154
+D+ +V + + G+ LDV+V NA + + F +
Sbjct: 72 KAYTAEVDVRDRAAVSRELANAVAEFGK-LDVVVANAGICPLG---AHLPVQAFADAFDV 127
Query: 155 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGG 212
+ +G L L +I GS+ G L P G G
Sbjct: 128 DFVGVINTVHAALPYLTSGA----SIITTGSVAG----LIAAAQPPGAGGPQGPGGAG 177
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A+ LAE G +I A+ + G +N M L++ +
Sbjct: 12 ALVTGASRGIGKAIAELLAERG-AKVIGTATSESGAQAISDYLG---DNGKGMALNVTNP 67
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+S+ + +D+LV NA
Sbjct: 68 ESIEAVLKAITDEFGGVDILVNNA 91
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 2e-08
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG+S+GLG + A A ++ +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVE 69
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
V V + G+ LDV++ NA + P + + + + TN G FL SR
Sbjct: 70 SDVINLVQSAIKEFGK-LDVMINNAGLENPVSSH-EMSLSDWNKVIDTNLTGAFLGSR 125
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 3e-08
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G A A+ G + + K + A G ++ + +L+
Sbjct: 30 ALVTGATGGIGEAIARCFHAQG-AIVGLHGTREDKLKEIAADLG---KDVFVFSANLSDR 85
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
S++Q + R +D+LV NA
Sbjct: 86 KSIKQLAEVAEREMEGIDILVNNA 109
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+TG+S GLG A A L G ++ + A+ A N + D+ +
Sbjct: 8 AIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNP 67
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ V V T + +D+LV NA
Sbjct: 68 EDVENMVKTAMDAFGRIDILVNNA 91
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 3e-08
Identities = 28/130 (21%), Positives = 50/130 (38%), Gaps = 15/130 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKE---------- 95
ITGA+ G G + A LA G II C+ + + E
Sbjct: 31 AFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR 89
Query: 96 NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 154
+D+ D+++ VD + GR LD+++ NAA+ + + + +
Sbjct: 90 RIIASQVDVRDFDAMQAAVDDGVTQLGR-LDIVLANAALASEGTRLNRMDPKTWRDMIDV 148
Query: 155 NHLGHFLLSR 164
N G ++ +R
Sbjct: 149 NLNGAWITAR 158
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 16/84 (19%), Positives = 31/84 (36%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+IT + GLG + L G + D E ++ +E + D+
Sbjct: 10 ALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKK 69
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ + + V+ +D L+ NA
Sbjct: 70 EDLHKIVEEAMSHFGKIDFLINNA 93
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 3e-08
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 17/153 (11%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAG---MAKENYTIMHL 102
+TG S G+G A AK LA G + +A+ + AG +A +
Sbjct: 35 FVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVA------IRA 88
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
D +++ Q + + LD+LV +A ++ E T F+ + N F+
Sbjct: 89 DNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLE-ETTVADFDEVMAVNFRAPFVA 147
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195
R L R+I +GS G
Sbjct: 148 IRSASRHLGD----GGRIITIGSNLAELVPWPG 176
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 4e-08
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKEN---YTIMHLDL 104
++I G LG TAK A ++++ ++ A K ++ + DL
Sbjct: 14 IVIAGGIKNLGALTAKTFALES-VNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDL 72
Query: 105 ASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLS 163
++ + V + D + G+ +D+ + L T + F+ N+ +
Sbjct: 73 SNEEEVAKLFDFAEKEFGK-VDIAINTVGKVLKKPIVET-SEAEFDAMDTINNKVAYFFI 130
Query: 164 R 164
+
Sbjct: 131 K 131
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 4e-08
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+ G+G A A LA G +I++ + A+ AA S G + + D++
Sbjct: 9 ALVTGAAQGIGKAIAARLAADG-ATVIVSDINAEGAKAAAASIG---KKARAIAADISDP 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
SV+ + +D+LV NA
Sbjct: 65 GSVKALFAEIQALTGGIDILVNNA 88
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 16/84 (19%), Positives = 33/84 (39%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+TG G+G + + L + G + + + + + ++ ++
Sbjct: 16 AYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDW 75
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
DS +Q D + +DVLV NA
Sbjct: 76 DSTKQAFDKVKAEVGEIDVLVNNA 99
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 21/84 (25%), Positives = 37/84 (44%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG++ G+G A A+ LA G II A + A + ++L S
Sbjct: 10 SLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSE 69
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+S+ + + +D+LV NA
Sbjct: 70 ESINKAFEEIYNLVDGIDILVNNA 93
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIM 100
KTL K I+TGAS G+G A A LA G +I AE + A
Sbjct: 24 KTLDKQVAIVTGASRGIGRAIALELARRG-AMVIGTATTEAGAEGIGAAFKQAGLEGRGA 82
Query: 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131
L++ +V V++ + L+VLV NA
Sbjct: 83 VLNVNDATAVDALVESTLKEFGALNVLVNNA 113
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 5e-08
Identities = 33/162 (20%), Positives = 64/162 (39%), Gaps = 24/162 (14%)
Query: 48 VIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY----TIMH 101
V++TGAS G+G+ A+ AE G + + +A+ A ++ ++ Y
Sbjct: 23 VVVTGASGPKGMGIEAARGCAEMGA-AVAITYAS--RAQGAEENVKELEKTYGIKAKAYK 79
Query: 102 LDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHLG 158
+ S +S + V G+ +D + NA TA + E + V + G
Sbjct: 80 CQVDSYESCEKLVKDVVADFGQ-IDAFIANAGA---TADSGILDGSVEAWNHVVQVDLNG 135
Query: 159 HFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199
F ++ + ++ + L+I S++G N P
Sbjct: 136 TFHCAKAVGHHFKERG---TGSLVITASMSG----HIANFPQ 170
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 52.1 bits (126), Expect = 6e-08
Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG ++G+G A A+ A G I +A D + A A + + D++
Sbjct: 10 AVITGGANGIGRAIAERFAVEGA-DIAIA--DLVPAPEAEAAIRNLGRRVLTVKCDVSQP 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVY 134
V F GR D+LV NA +Y
Sbjct: 67 GDVEAFGKQVISTFGR-CDILVNNAGIY 93
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 19/140 (13%)
Query: 49 IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD 108
++ AS G+G A A L++ G + + R+ +R+ + DL
Sbjct: 23 LVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRSGHRYVVC---------DLR--K 70
Query: 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168
+ + D+LV NA + T E F+ ++ + L + R L
Sbjct: 71 DLDLLFEKV---KEV-DILVLNAGGPKAGFFD-ELTNEDFKEAIDSLFLNMIKIVRNYLP 125
Query: 169 DLKQSDYPSKRLIIVGSITG 188
+K+ + R++ + S +
Sbjct: 126 AMKEKGWG--RIVAITSFSV 143
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 6e-08
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 20/156 (12%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 97
+GK V+ITG SG+G A + A A+ G +I +A +L E A E
Sbjct: 46 KGKN------VLITGGDSGIGRAVSIAFAKEGA-NIAIA---YLDEEGDANETKQYVEKE 95
Query: 98 ----TIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 152
++ DL+ + V T R+ G L++LV N A P TAE E +
Sbjct: 96 GVKCVLLPGDLSDEQHCKDIVQETVRQLGS-LNILVNNVAQQYPQQGLEYITAEQLEKTF 154
Query: 153 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
N +F +++ L LKQ D +I SI
Sbjct: 155 RINIFSYFHVTKAALSHLKQGD----VIINTASIVA 186
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 8e-08
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 47 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 105
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ + + ++ + +D+LV NA
Sbjct: 106 EEISEVINKILTEHKNVDILVNNA 129
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/170 (22%), Positives = 65/170 (38%), Gaps = 29/170 (17%)
Query: 32 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 91
++ K SV++TG + G+GLA A+ LA G + + G
Sbjct: 2 TATATEGAKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRG----SGAPKGLFG 57
Query: 92 MAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKEPTFTAEG 147
+ +D+ D+V + P++VLV NA + +L E E
Sbjct: 58 VE--------VDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTE-----EK 104
Query: 148 FELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 196
FE + N G F +++ + R+I +GS++G L G
Sbjct: 105 FEKVINANLTGAFRVAQRASRSMQRNK---FGRMIFIGSVSG----LWGI 147
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 1e-07
Identities = 22/84 (26%), Positives = 31/84 (36%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A LA G + A+ + A + D++
Sbjct: 31 ALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQE 90
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
V LDVLV NA
Sbjct: 91 SEVEALFAAVIERWGRLDVLVNNA 114
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 1e-07
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A LA+ G ++ + KA + + D+A+
Sbjct: 7 ALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANA 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
+ V V +D+LV NA
Sbjct: 67 EDVTNMVKQTVDVFGQVDILVNNA 90
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 41/177 (23%), Positives = 67/177 (37%), Gaps = 29/177 (16%)
Query: 25 MATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84
M ++ SS ++ SV++TG + G+GLA A+A A+ G I E
Sbjct: 1 MGSSHHHHHHSSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSG----E 56
Query: 85 RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAV----YLPTAKE 140
+ D+ + V Q + P++VL+ NA V L E
Sbjct: 57 PPEGFLAVK--------CDITDTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSE 108
Query: 141 PTFTAEGFELSVGTNHLGHFLLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGN 196
E F V TN G F + + L+ R++++ S+ G L G+
Sbjct: 109 -----EDFTSVVETNLTGTFRVVKRANRAMLRAK---KGRVVLISSVVG----LLGS 153
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTIMHLDLA 105
++TG + G+G ++ LA G + I +A + +A K A + + LD+
Sbjct: 5 AMVTGGAQGIGRGISEKLAADG-FDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVT 63
Query: 106 SLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ +D + G DVLV NA + T E + N F +
Sbjct: 64 DKANFDSAIDEAAEKLGG-FDVLVNNAGIA-QIKPLLEVTEEDLKQIYSVNVFSVFFGIQ 121
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------ 99
ITGA+ G G A A LA G II C + T+
Sbjct: 16 AFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAA--TVKLVEDI 72
Query: 100 ------MHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA 145
D+ +S+ + GR LD++V NA + +A + +
Sbjct: 73 GSRIVARQADVRDRESLSAALQAGLDELGR-LDIVVANAGIAPMSAGDDGWHD 124
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 30/167 (17%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMAKENYTIMH 101
++TGA+ +G A A L +TG + +++ L E + + A +
Sbjct: 26 AVVTGAAKRIGRAIAVKLHQTG-YRVVIHYHNSAEAAVSLADELNKERSNTAV----VCQ 80
Query: 102 LDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT---------AKEPTFTAEG 147
DL + + + + FR GR DVLV NA+ + PT
Sbjct: 81 ADLTNSNVLPASCEEIINSCFRAFGR-CDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQ 139
Query: 148 FELSVGTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITGNT 190
+GTN + FLL+ K ++ ++ + +
Sbjct: 140 VAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAMVDQ 186
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 24/84 (28%), Positives = 36/84 (42%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G + A LAE G + KAE + + + ++A
Sbjct: 7 ALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADA 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
D V+ + LDVLV NA
Sbjct: 67 DEVKAMIKEVVSQFGSLDVLVNNA 90
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 20/172 (11%)
Query: 36 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 95
+ + + +ITG + +G + A L + G ++ A+R A+
Sbjct: 2 NETSHEASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA 61
Query: 96 NYTI-MHLDLASLDSVRQFVD-----TFRRSGRPLDVLVCNAAVYLPT----------AK 139
+ DL+ S+ + +FR GR DVLV NA+ Y PT A
Sbjct: 62 GSAVLCKGDLSLSSSLLDCCEDIIDCSFRAFGR-CDVLVNNASAYYPTPLLPGDDTNGAA 120
Query: 140 EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRL--II-VGSITG 188
+ G+N + L R + R ++ +
Sbjct: 121 DAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 172
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 25/118 (21%), Positives = 45/118 (38%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG+S G+G A A LAE G +I R A A+ ++ ++
Sbjct: 7 ALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQP 66
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+++ GR LDV V NAA + ++ ++ N ++
Sbjct: 67 AKIKEMFQQIDETFGR-LDVFVNNAASGVLRPVM-ELEETHWDWTMNINAKALLFCAQ 122
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
+ITGAS G+G A A LAE G I ++ KAE A+ ++ +L
Sbjct: 4 ALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE 63
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNA 131
++ V LD LV NA
Sbjct: 64 AEAATALVHQAAEVLGGLDTLVNNA 88
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 39/163 (23%), Positives = 64/163 (39%), Gaps = 22/163 (13%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 95
ITGA+ G G + A LA G II C E ++A + ++
Sbjct: 18 AFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76
Query: 96 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 153
LD+ ++R+ V + GR LDV+V NA V L + T E ++ +G
Sbjct: 77 RKALTRVLDVRDDAALRELVADGMEQFGR-LDVVVANAGV-LSWGRVWELTDEQWDTVIG 134
Query: 154 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196
N G + R + + ++ +++V S G L
Sbjct: 135 VNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSSAG----LKAT 172
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 19/125 (15%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK-----------AERAAKSAGMAK 94
+TGA+ G G + A LA+ G II C+ E A++A + K
Sbjct: 14 AFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK 72
Query: 95 EN---YTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFEL 150
+ +D+ D+++ VD + GR LD++V NA + + E +
Sbjct: 73 GHNRRIVTAEVDVRDYDALKAAVDSGVEQLGR-LDIIVANAGIGNGGDTLDKTSEEDWTE 131
Query: 151 SVGTN 155
+ N
Sbjct: 132 MIDIN 136
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 26/177 (14%), Positives = 51/177 (28%), Gaps = 37/177 (20%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 93
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 12 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 70
Query: 94 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFT 144
+ + + V DVLV NA+ + PT E
Sbjct: 71 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 130
Query: 145 AEGFELSV---------GTNHLGHFLLSRLLLDDLKQSDYPSK----RLIIVGSITG 188
+ G+N + + L + + + + +I +
Sbjct: 131 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMT 187
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 3e-07
Identities = 23/84 (27%), Positives = 37/84 (44%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGAS G+G A A +L + G ++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKE 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
V + T + +DV+V NA
Sbjct: 64 ADVEAMMKTAIDAWGTIDVVVNNA 87
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 27/204 (13%), Positives = 56/204 (27%), Gaps = 43/204 (21%)
Query: 21 RAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-- 78
+ +++P ++TGA+ LG + A+ L G + + +
Sbjct: 28 HHHSSGLVPRGSHMTAPTVP------VALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRS 80
Query: 79 ----DFLKAERAAKSAGMA-------------KENYTIMHLDLASLDSVRQFVDTFRRSG 121
+ L A A+ A + + + V
Sbjct: 81 AAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHW 140
Query: 122 RPLDVLVCNAAVYLPTA----KEPTFTAEGFELSV---------GTNHLGHFLLSRLLLD 168
DVLV NA+ + PT E + G+N + + L +
Sbjct: 141 GRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200
Query: 169 DLKQSDYPSK----RLIIVGSITG 188
+ + + +I +
Sbjct: 201 RVAGTPAKHRGTNYSIINMVDAMT 224
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* Length = 405 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 6e-07
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 12/113 (10%)
Query: 32 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 91
+D + +G V++ GAS+G GLA A + + E ++G
Sbjct: 34 IDYVTTEGPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSG 93
Query: 92 MAKENYTI------------MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
++ D S + + +D ++ +D ++ + A
Sbjct: 94 WYNSAAFHKFAAQKGLYAKSINGDAFSDEIKQLTIDAIKQDLGQVDQVIYSLA 146
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 6e-07
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITGA+ G+G AT + A+ G + + E A + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHP------VVMDVADP 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
SV + LD +V A
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYA 85
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 33/155 (21%), Positives = 53/155 (34%), Gaps = 18/155 (11%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMA--CRDFLK--------AERAAKSAGMAKE-- 95
ITGA+ G G A A +A G II + +++ + +
Sbjct: 14 AFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN 72
Query: 96 -NYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVG 153
+D D +R+ VD GR LD++V NA V T E F +
Sbjct: 73 RRIVAAVVDTRDFDRLRKVVDDGVAALGR-LDIIVANAGV-AAPQAWDDITPEDFRDVMD 130
Query: 154 TNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
N G + + + +I++ S G
Sbjct: 131 INVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 24 TMATASPAVDVSSPQGKKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLK 82
+M + + G L+ V++T A+ +G+G TA+ G ++++ +
Sbjct: 4 SMNLSEAPKE---IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEG-ADVVISDYHERR 59
Query: 83 AERAAKS-AGMAKENYTIMHLDLASLDSVRQFVD-TFRRSGRPLDVLVCNA 131
A + + D+ S ++V + T ++GR LDVLV NA
Sbjct: 60 LGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAGR-LDVLVNNA 109
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 47/204 (23%), Positives = 73/204 (35%), Gaps = 36/204 (17%)
Query: 18 GVVRAQTMATASPAVDVSSPQGKKTLRKGS---------VIITGASSGLGLATAKALAET 68
G + AQT S V +G+ ITGA+ G G A LA+
Sbjct: 10 GTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQGKVAFITGAARGQGRTHAVRLAQD 69
Query: 69 GKWHIIMA--CRDFLKAERAAKSAGMAKENYTI------------MHLDLASLDSVRQFV 114
G I+ CR + A S KE T+ D+ L S++ V
Sbjct: 70 GA-DIVAIDLCRQQPNLDYAQGSPEELKE--TVRLVEEQGRRIIARQADVRDLASLQAVV 126
Query: 115 D-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL-KQ 172
D G +D+LV N + + + T + + + TN +G + R +L + ++
Sbjct: 127 DEALAEFGH-IDILVSNVGI-SNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIER 184
Query: 173 SDYPSKRLIIVGSITGNTNTLAGN 196
+I V S G L G
Sbjct: 185 GQ--GGSVIFVSSTVG----LRGA 202
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} Length = 422 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 2e-05
Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 13/143 (9%)
Query: 32 VDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 91
+ + +G + V++ GASSG GLA+ A + + A +AG
Sbjct: 48 IAATRARGVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAG 107
Query: 92 MAKENYTI------------MHLDLASLDSVRQFVDTFR-RSGRPLDVLVCNAAVYLPTA 138
++ D S + Q ++ + G +D++V + A +
Sbjct: 108 WYNSAAFDKHAKAAGLYSKSINGDAFSDAARAQVIELIKTEMGGQVDLVVYSLASPVRKL 167
Query: 139 KEPTFTAEGFELSVGTNHLGHFL 161
+G + +
Sbjct: 168 PGSGEVKRSALKPIGQTYTATAI 190
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 41/171 (23%), Positives = 59/171 (34%), Gaps = 34/171 (19%)
Query: 48 VIITGASSGLGLATAKALAETG---------KWHIIMACRDFLKAERAA---KSAG-MAK 94
VI+TGA G+G A A A A G A+ +AG A
Sbjct: 30 VIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAV 89
Query: 95 ENYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFEL 150
+ + ++A D + T G LDVLV NA + ++ + E F+
Sbjct: 90 ADGS----NVADWDQAAGLIQTAVETFGG-LDVLVNNAGI----VRDRMIANTSEEEFDA 140
Query: 151 SVGTNHLGHFLLSR----LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ + GHF R K R+I S G L G+V
Sbjct: 141 VIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG----LQGSV 187
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 1e-04
Identities = 36/165 (21%), Positives = 64/165 (38%), Gaps = 28/165 (16%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIM--ACRDFLKAERAAKSAGMAKENYTI------ 99
+ITG + G+G + A ALAE G I + C + +A E T+
Sbjct: 13 ALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAE--TVALVEKT 69
Query: 100 ------MHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV 152
+D+ ++ FV G +D+ + NA + A P + ++ +
Sbjct: 70 GRRCISAKVDVKDRAALESFVAEAEDTLGG-IDIAITNAGI-STIALLPEVESAQWDEVI 127
Query: 153 GTNHLGHFLLSRLLLDDL-KQSDYPSKRLIIVGSITGNTNTLAGN 196
GTN G F + + K++ R++ V S+ G + N
Sbjct: 128 GTNLTGTFNTIAAVAPGMIKRN---YGRIVTVSSMLG----HSAN 165
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 34/166 (20%)
Query: 48 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 95
VIITGA GLG + A+ G + + A+ G +A
Sbjct: 11 VIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVA 70
Query: 96 NYTIMHLDLASLDS-VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELS 151
+Y ++ D V V F G + V++ NA + ++ + T + ++L
Sbjct: 71 DYN----NVLDGDKIVETAVKNF---GT-VHVIINNAGI----LRDASMKKMTEKDYKLV 118
Query: 152 VGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ + G F +++ ++ Y R++ S G L GN
Sbjct: 119 IDVHLNGAFAVTKAAWPYFQKQKYG--RIVNTSSPAG----LYGNF 158
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 16 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 75
R V A+ +A A+PAV GK+ GSV++TG + G+G A+ LAE G H+++
Sbjct: 213 RGSGVLARRLAHAAPAV---PGSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVL 269
Query: 76 ACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
R A AA+ ++ TI D A +++ + PL + +A
Sbjct: 270 TSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED-APLTAVFHSAG 328
Query: 133 VYLPTAKEPTFTAEGFE 149
V A T +
Sbjct: 329 VAHDDAPVADLTLGQLD 345
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 12/133 (9%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHL 102
S +ITG G GL A+ L G +++ R ++ A+ + +
Sbjct: 1885 KSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTS 1944
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSV-----GTNHL 157
+ +SLD R + + G P+ + N A+ L A T E F+ GT +L
Sbjct: 1945 NASSLDGARSLITEATQLG-PVGGVF-NLAMVLRDAVLENQTPEFFQDVSKPKYSGTANL 2002
Query: 158 GHFLLSRLLLDDL 170
++R +L
Sbjct: 2003 -D-RVTREACPEL 2013
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 28/163 (17%)
Query: 48 VIITGASSGLGLATAKALAETG--------KWHIIMACRDFLKAERAA---KSAG-MAKE 95
V++TGA GLG A A A AE G + A++ + G A
Sbjct: 12 VLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVA 71
Query: 96 NYTIMHLDLASLDSVRQFVDT-FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGT 154
NY S+++ + V T GR +DV+V NA + L + E +++
Sbjct: 72 NY-------DSVEAGEKLVKTALDTFGR-IDVVVNNAGI-LRDRSFSRISDEDWDIIQRV 122
Query: 155 NHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197
+ G F ++R D +K+ +Y R+I+ S +G + GN
Sbjct: 123 HLRGSFQVTRAAWDHMKKQNYG--RIIMTASASG----IYGNF 159
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Length = 486 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 9e-04
Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 9/121 (7%)
Query: 16 RNGVVRAQTMATASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIM 75
R V + A+ + G+V++TG + G+G A+ LA G H+++
Sbjct: 202 RADGVYGRRWVRAAAPATDDEWKPT-----GTVLVTGGTGGVGGQIARWLARRGAPHLLL 256
Query: 76 ACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132
R A+ A + + T+ D+ +SVR+ + PL + AA
Sbjct: 257 VSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD-DVPLSAVFHAAA 315
Query: 133 V 133
Sbjct: 316 T 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.97 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.97 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.96 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.96 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.96 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.96 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.95 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.94 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.94 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.92 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.92 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.92 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.92 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.91 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.89 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.89 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.88 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.88 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.88 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.88 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.88 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.88 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.88 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.88 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.87 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.87 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.87 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.87 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.87 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.86 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.86 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.86 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.86 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.86 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.85 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.85 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.85 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.85 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.85 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.85 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.85 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.85 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.85 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.85 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.85 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.85 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.85 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.84 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.84 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.84 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.84 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.84 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.84 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.84 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.83 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.83 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.83 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.83 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.83 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.83 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.83 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.82 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.82 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.81 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.81 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.81 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.81 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.81 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.81 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.81 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.8 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.8 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.79 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.78 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.78 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.77 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.77 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.76 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.76 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.75 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.74 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.74 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.74 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.72 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.72 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.71 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.71 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.69 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.66 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.65 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.64 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.63 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.63 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.62 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.62 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.56 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.54 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.53 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.52 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.48 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.46 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.31 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.02 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.89 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.78 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.6 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.51 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.44 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.44 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.41 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.4 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.39 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.37 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.35 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.32 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.3 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.27 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.15 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.14 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.13 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.12 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.1 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.09 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.09 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.08 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.07 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.06 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.05 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.05 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.03 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.96 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.85 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 97.84 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.83 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.79 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.78 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.75 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.74 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.7 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.69 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.68 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.68 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.66 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.62 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.6 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 97.59 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.59 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.59 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.58 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.54 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.53 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.53 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.53 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.45 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.42 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.41 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.4 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.4 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.39 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.39 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.36 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.34 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.26 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.26 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.24 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.23 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.22 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.2 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.18 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.16 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.1 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 97.05 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.03 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.02 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.99 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 96.94 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.94 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 96.85 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.84 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 96.82 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 96.78 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.7 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.65 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.63 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 96.62 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 96.58 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.57 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 96.57 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.54 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.53 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 96.53 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.52 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 96.52 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.5 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.48 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.44 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 96.43 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.42 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.42 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.38 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.37 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 96.37 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 96.37 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 96.36 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.35 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.35 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.33 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.32 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.29 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.18 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.16 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 96.16 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.13 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.12 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.08 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.06 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.03 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.0 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.97 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 95.94 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.89 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 95.88 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 95.81 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.81 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.79 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.77 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.77 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.77 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 95.75 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 95.74 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 95.71 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 95.64 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 95.61 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 95.53 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.41 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.38 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.38 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 95.35 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 95.34 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 95.34 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.17 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.12 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.12 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 95.03 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.01 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.92 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.92 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.92 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 94.8 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 94.77 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.73 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 94.68 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 94.67 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 94.63 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 94.63 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 94.62 | |
| 4a27_A | 349 | Synaptic vesicle membrane protein VAT-1 homolog-L; | 94.6 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 94.59 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 94.54 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 94.53 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 94.53 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.51 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 94.46 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.45 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 94.37 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.27 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 94.21 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 94.16 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 94.08 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 94.0 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.99 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 93.98 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 93.97 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 93.95 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 93.91 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 93.72 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 93.66 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 93.65 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 93.59 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 93.53 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 93.53 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 93.52 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 93.5 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 93.5 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 93.44 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 93.43 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-50 Score=364.35 Aligned_cols=249 Identities=17% Similarity=0.147 Sum_probs=220.6
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.++++..+.++.++++|+++.++++++++++.+
T Consensus 2 y~sL~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 80 (254)
T 4fn4_A 2 YQSLKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFE 80 (254)
T ss_dssp CGGGTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999996 999999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||+||||||+.....++.+.+.++|++++++|+.|+|.++|+++|+|++++ .|+|||+||..+..
T Consensus 81 ~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~~g~~--------- 149 (254)
T 4fn4_A 81 TYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQG--KGVIVNTASIAGIR--------- 149 (254)
T ss_dssp HHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhcC---------
Confidence 9999999999999876555778999999999999999999999999999999876 49999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|++||+|+.+|+|+||.|+ ++.||+||+|+||+|+|++......+.
T Consensus 150 --------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~ 202 (254)
T 4fn4_A 150 --------------------------GGFAGAPYTVAKHGLIGLTRSIAAHY-GDQGIRAVAVLPGTVKTNIGLGSSKPS 202 (254)
T ss_dssp --------------------------SSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSCTTSCSSCC
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCCCCcccccccCCc
Confidence 55678899999999999999999999 888999999999999999765543322
Q ss_pred hhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......... ..+.+++.+|+|+|.+++||+++.+.++||+.+..||+.
T Consensus 203 ~~~~~~~~~~~~~~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG~ 251 (254)
T 4fn4_A 203 ELGMRTLTKLMSLSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGGL 251 (254)
T ss_dssp HHHHHHHHHHHTTCCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCCc
Confidence 222222222 234578899999999999999999999999999999974
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=354.37 Aligned_cols=247 Identities=16% Similarity=0.133 Sum_probs=219.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|+||++|||||++|||+++|+.|+++|+ +|++++|+++.+++..+++...+.++..+++|+++.++++++++++.++
T Consensus 5 f~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (255)
T 4g81_D 5 FDLTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAE 83 (255)
T ss_dssp TCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999996 9999999999999999998888889999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+||+||||||+... .++.+.+.++|++++++|+.|+|.++|+++|+|.++.. +|+||++||..+..
T Consensus 84 ~G~iDiLVNNAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~-~G~IVnisS~~~~~---------- 151 (255)
T 4g81_D 84 GIHVDILINNAGIQYR-KPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNS-GGKIINIGSLTSQA---------- 151 (255)
T ss_dssp TCCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred CCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccC-CCEEEEEeehhhcC----------
Confidence 9999999999998755 57889999999999999999999999999999976432 48999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|+|++|.|+ ++.||+||+|+||+|+|++....... .
T Consensus 152 -------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~-~ 204 (255)
T 4g81_D 152 -------------------------ARPTVAPYTAAKGGIKMLTCSMAAEW-AQFNIQTNAIGPGYILTDMNTALIED-K 204 (255)
T ss_dssp -------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGHHHHTC-H
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCCchhhcccCC-H
Confidence 56788899999999999999999999 88899999999999999965432111 1
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|..++||+++.+.++||+.+..||+.
T Consensus 205 ~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~ 251 (255)
T 4g81_D 205 QFDSWVKSSTPSQRWGRPEELIGTAIFLSSKASDYINGQIIYVDGGW 251 (255)
T ss_dssp HHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCe
Confidence 11122345667788999999999999999999999999999999974
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=345.12 Aligned_cols=241 Identities=22% Similarity=0.217 Sum_probs=209.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|++.|+ +|++++|+.+.++...+++ +.++..+++|+++.++++++++++.+++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~---g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 101 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEI---GGGAVGIQADSANLAELDRLYEKVKAEA 101 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCCeEEEEecCCCHHHHHHHHHHHHHHc
Confidence 48999999999999999999999999996 9999999998888887777 3678899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
|+||+||||||+... .++.+.+.++|++.+++|+.|++.++++++|+|++. |+||++||..+..
T Consensus 102 G~iDiLVNNAG~~~~-~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~----G~IInisS~~~~~----------- 165 (273)
T 4fgs_A 102 GRIDVLFVNAGGGSM-LPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG----SSVVLTGSTAGST----------- 165 (273)
T ss_dssp SCEEEEEECCCCCCC-CCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE----EEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC----CeEEEEeehhhcc-----------
Confidence 999999999998654 578899999999999999999999999999999763 7999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh---
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--- 278 (358)
+.++...|++||+|+.+|+|+||.|+ ++.||+||+|+||+|+|+++......
T Consensus 166 ------------------------~~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~ 220 (273)
T 4fgs_A 166 ------------------------GTPAFSVYAASKAALRSFARNWILDL-KDRGIRINTLSPGPTETTGLVELAGKDPV 220 (273)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEECSBCC---------CHH
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHhhccCch
Confidence 56788899999999999999999999 88999999999999999976542211
Q ss_pred -hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............|.+|+.+|+|+|.+++||+++.+.++||+.+..||+.
T Consensus 221 ~~~~~~~~~~~~~PlgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG~ 270 (273)
T 4fgs_A 221 QQQGLLNALAAQVPMGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGGS 270 (273)
T ss_dssp HHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEeECcCh
Confidence 1112223445667888999999999999999999999999999999974
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=338.70 Aligned_cols=240 Identities=16% Similarity=0.174 Sum_probs=205.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.. ++..+.+...+.++..+++|+++.++++++++
T Consensus 5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~----- 76 (247)
T 4hp8_A 5 FSLEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFT----- 76 (247)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSST-----
T ss_pred cCCCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHH-----
Confidence 589999999999999999999999999997 9999999853 34455566667889999999999998877653
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||+... .++.+.+.++|++.+++|+.|+|.++|+++|+|++++. .|+|||+||..+..
T Consensus 77 ~g~iDiLVNNAGi~~~-~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~-~G~IVnisS~~~~~---------- 144 (247)
T 4hp8_A 77 DAGFDILVNNAGIIRR-ADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGR-SGKVVNIASLLSFQ---------- 144 (247)
T ss_dssp TTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred hCCCCEEEECCCCCCC-CCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-CcEEEEEechhhCC----------
Confidence 5799999999998755 46778999999999999999999999999999987642 48999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|+|++|.|+ ++.||+||+|+||+|+|++...-. ...
T Consensus 145 -------------------------g~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~~~~~~~-~~~ 197 (247)
T 4hp8_A 145 -------------------------GGIRVPSYTAAKHGVAGLTKLLANEW-AAKGINVNAIAPGYIETNNTEALR-ADA 197 (247)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHH-TSH
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCcchhhcc-cCH
Confidence 55778899999999999999999999 888999999999999999663321 111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+|+-+|+|+|.+++||+++.+.++||+.+.+||+.
T Consensus 198 ~~~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG~ 244 (247)
T 4hp8_A 198 ARNKAILERIPAGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGGW 244 (247)
T ss_dssp HHHHHHHTTCTTSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECccc
Confidence 12223345667788999999999999999999999999999999963
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-46 Score=338.39 Aligned_cols=244 Identities=19% Similarity=0.165 Sum_probs=205.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.+..+. .+++...+.++.++++|+++.++++++++++.++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~-~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 80 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAF-LDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT 80 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHH-HHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHH-HHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999997 99999998765443 3444445678999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
||+||+||||||+... .. .+.+.++|++.+++|+.+++.++++++|+|++++ |+||++||..+..
T Consensus 81 ~G~iDiLVNnAGi~~~-~~-~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~IVnisS~~~~~---------- 145 (258)
T 4gkb_A 81 FGRLDGLVNNAGVNDG-IG-LDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR---GAIVNISSKTAVT---------- 145 (258)
T ss_dssp HSCCCEEEECCCCCCC-CC-TTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTHHHH----------
T ss_pred hCCCCEEEECCCCCCC-CC-ccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC---CeEEEEeehhhcc----------
Confidence 9999999999998643 23 4789999999999999999999999999998653 8999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|++||+|+.+|+|++|.|+ ++.||+||+|+||+|+|++........
T Consensus 146 -------------------------~~~~~~~Y~asKaav~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~ 199 (258)
T 4gkb_A 146 -------------------------GQGNTSGYCASKGAQLALTREWAVAL-REHGVRVNAVIPAEVMTPLYRNWIATFE 199 (258)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCSCC--------
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCChhHhhhhhccc
Confidence 56788899999999999999999999 888999999999999999764422111
Q ss_pred --hhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 --FRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 --~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|. +++.+|+|+|.+++||+++.+.++||+.+..||+.
T Consensus 200 ~~~~~~~~~~~~~plg~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG~ 250 (258)
T 4gkb_A 200 DPEAKLAEIAAKVPLGRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGGY 250 (258)
T ss_dssp ---CHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred ChHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCCc
Confidence 1111222334444 47889999999999999999999999999999974
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=329.28 Aligned_cols=230 Identities=19% Similarity=0.170 Sum_probs=196.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++||++|||||++|||+++++.|+++|+ +|++++|+.+.++. ....++..+++|+++.++++++++ +++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~------~~~~~~~~~~~Dv~~~~~v~~~~~----~~g 77 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHA------PRHPRIRREELDITDSQRLQRLFE----ALP 77 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTS------CCCTTEEEEECCTTCHHHHHHHHH----HCS
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhh------hhcCCeEEEEecCCCHHHHHHHHH----hcC
Confidence 4899999999999999999999999996 99999998755432 235688999999999999887765 478
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
+||+||||||+.. +..+.+.++|++.+++|+.|++.++|+++|+|++++ |+|||+||..+..
T Consensus 78 ~iDiLVNNAGi~~---~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~---G~IVnisS~~~~~------------ 139 (242)
T 4b79_A 78 RLDVLVNNAGISR---DREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG---GSILNIASMYSTF------------ 139 (242)
T ss_dssp CCSEEEECCCCCC---GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC---EEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCCC---CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC---CeEEEEeeccccC------------
Confidence 9999999999863 455789999999999999999999999999998753 8999999999874
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||+|+.+|+|+||.|+ ++.||+||+|+||+|+||+...... ....
T Consensus 140 -----------------------~~~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~m~~~~~~-~~~~ 194 (242)
T 4b79_A 140 -----------------------GSADRPAYSASKGAIVQLTRSLACEY-AAERIRVNAIAPGWIDTPLGAGLKA-DVEA 194 (242)
T ss_dssp -----------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCC-----CC-CHHH
T ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCCChhhhcccC-CHHH
Confidence 56778899999999999999999999 8889999999999999996543221 1122
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
........|.+|+.+|+|+|.+++||+++.+.++||+.+.+||+
T Consensus 195 ~~~~~~~~PlgR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG 238 (242)
T 4b79_A 195 TRRIMQRTPLARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGG 238 (242)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcc
Confidence 23345567788899999999999999999999999999999996
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-44 Score=323.70 Aligned_cols=228 Identities=18% Similarity=0.177 Sum_probs=200.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||+++|+.|+++|+ +|++++|+++.+++..++ ..++.++++|+++.++++++++++.+++++|
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i 76 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKE----RPNLFYFHGDVADPLTLKKFVEYAMEKLQRI 76 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTT----CTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHh----cCCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 48999999999999999999999996 999999998776655433 4678999999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||+... .++.+.+.++|++++++|+.+++.++|+++|+|++++ |+||++||..+..
T Consensus 77 DiLVNNAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~---G~IInisS~~~~~-------------- 138 (247)
T 3ged_A 77 DVLVNNACRGSK-GILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK---GRIINIASTRAFQ-------------- 138 (247)
T ss_dssp CEEEECCCCCCC-CGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGTS--------------
T ss_pred CEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CcEEEEeeccccc--------------
Confidence 999999998754 4778999999999999999999999999999998864 8999999999874
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|++||+|+.+|+|+||.|+ ++ ||+||+|+||+|+|++..... .
T Consensus 139 ---------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~-~IrVN~I~PG~i~t~~~~~~~-------~ 188 (247)
T 3ged_A 139 ---------------------SEPDSEAYASAKGGIVALTHALAMSL-GP-DVLVNCIAPGWINVTEQQEFT-------Q 188 (247)
T ss_dssp ---------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TT-TSEEEEEEECSBCCCC---CC-------H
T ss_pred ---------------------CCCCCHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEecCcCCCCCcHHHH-------H
Confidence 56788899999999999999999999 66 999999999999998653321 1
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......|.+++.+|+|+|.+++||+++ .++||+.+.+||+.
T Consensus 189 ~~~~~~Pl~R~g~pediA~~v~fL~s~--~~iTG~~i~VDGG~ 229 (247)
T 3ged_A 189 EDCAAIPAGKVGTPKDISNMVLFLCQQ--DFITGETIIVDGGM 229 (247)
T ss_dssp HHHHTSTTSSCBCHHHHHHHHHHHHHC--SSCCSCEEEESTTG
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHHhC--CCCCCCeEEECcCH
Confidence 233456778899999999999999985 47999999999975
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-44 Score=326.45 Aligned_cols=245 Identities=14% Similarity=0.118 Sum_probs=213.0
Q ss_pred ccCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++|+||++|||||+| |||+++|+.|+++|+ +|++++|+++.++++.+.+++. +.++.++++|+++.++++++++++
T Consensus 2 ~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 80 (256)
T 4fs3_A 2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQI 80 (256)
T ss_dssp CCCTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHH
Confidence 589999999999875 999999999999996 9999999998888888877664 457899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 118 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
.++++++|+||||||+... ...+.+.+.++|...+++|+.+++.+++.+++++++ +|+||++||..+..
T Consensus 81 ~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~----~G~IVnisS~~~~~---- 152 (256)
T 4fs3_A 81 GKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE----GGSIVATTYLGGEF---- 152 (256)
T ss_dssp HHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT----CEEEEEEECGGGTS----
T ss_pred HHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CCEEEEEecccccc----
Confidence 9999999999999997642 234557788999999999999999999999887765 38999999999874
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.||+|+.+|+|+||.|+ ++.||+||+|+||+++|++...
T Consensus 153 -------------------------------~~~~~~~Y~asKaal~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~ 200 (256)
T 4fs3_A 153 -------------------------------AVQNYNVMGVAKASLEANVKYLALDL-GPDNIRVNAISAGPIRTLSAKG 200 (256)
T ss_dssp -------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTT
T ss_pred -------------------------------CcccchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCCCCChhhhh
Confidence 56788999999999999999999999 8889999999999999986543
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ..............|.+++.+|+|+|.+++||+++.+.++||+.+..||+-
T Consensus 201 ~-~~~~~~~~~~~~~~Pl~R~g~peevA~~v~fL~Sd~a~~iTG~~i~VDGG~ 252 (256)
T 4fs3_A 201 V-GGFNTILKEIKERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGF 252 (256)
T ss_dssp C-TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred c-cCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCEEEECcCH
Confidence 2 222223334455677888999999999999999999999999999999974
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=328.08 Aligned_cols=238 Identities=17% Similarity=0.210 Sum_probs=201.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+..+ ...+..++++|+++.++++++++++.++
T Consensus 7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (261)
T 4h15_A 7 LNLRGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPE----------GLPEELFVEADLTTKEGCAIVAEATRQR 75 (261)
T ss_dssp CCCTTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCT----------TSCTTTEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchh----------CCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 479999999999999999999999999996 99999997532 1123457899999999999999999999
Q ss_pred CCCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+|+||+||||||+... ..++.+.+.++|++.+++|+.+++.++|+++|+|++++ .|+||++||..+..
T Consensus 76 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Iv~isS~~~~~--------- 144 (261)
T 4h15_A 76 LGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARG--SGVVVHVTSIQRVL--------- 144 (261)
T ss_dssp TSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcC--CceEEEEEehhhcc---------
Confidence 9999999999998643 34677899999999999999999999999999999876 48999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.+ +...|+.||+|+.+|+++||.|+ ++.||+||+|+||+|+|++.......
T Consensus 145 --------------------------~~~~~~~~Y~asKaal~~lt~~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~ 197 (261)
T 4h15_A 145 --------------------------PLPESTTAYAAAKAALSTYSKAMSKEV-SPKGVRVVRVSPGWIETEASVRLAER 197 (261)
T ss_dssp --------------------------CCTTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHH
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeCCCcCCcchhhhhHH
Confidence 333 56789999999999999999999 88899999999999999865432111
Q ss_pred h-----------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 L-----------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~-----------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ...........|.+|+.+|+|+|..++||+++.+.++||+.+.+||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 198 LAKQAGTDLEGGKKIIMDGLGGIPLGRPAKPEEVANLIAFLASDRAASITGAEYTIDGGT 257 (261)
T ss_dssp HHHHTTCCHHHHHHHHHHHTTCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HHHhhccchhhHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcC
Confidence 1 111112233457788999999999999999999999999999999975
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=315.17 Aligned_cols=245 Identities=18% Similarity=0.170 Sum_probs=213.5
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 85 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALD 85 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999999999999995 999999999888888888877778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||..... .+ +.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 86 ~~g~id~lv~nAg~~~~~-~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 152 (256)
T 3gaf_A 86 QFGKITVLVNNAGGGGPK-PF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAG--GGAILNISSMAGEN--------- 152 (256)
T ss_dssp HHSCCCEEEECCCCCCCC-CT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCCC-CC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHHHcC---------
Confidence 999999999999987553 44 789999999999999999999999999998875 48999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+++++|++.++.|+ .+.||+||+|+||+++|++......+.
T Consensus 153 --------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 205 (256)
T 3gaf_A 153 --------------------------TNVRMASYGSSKAAVNHLTRNIAFDV-GPMGIRVNAIAPGAIKTDALATVLTPE 205 (256)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHCCHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEEccccCchhhhccCHH
Confidence 55678899999999999999999999 778999999999999998653321111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 206 --~~~~~~~~~p~~r~~~~~dva~~~~~L~s~~~~~itG~~i~vdgG~ 251 (256)
T 3gaf_A 206 --IERAMLKHTPLGRLGEAQDIANAALFLCSPAAAWISGQVLTVSGGG 251 (256)
T ss_dssp --HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred --HHHHHHhcCCCCCCCCHHHHHHHHHHHcCCcccCccCCEEEECCCc
Confidence 1112223345567889999999999999998888999999999975
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-42 Score=313.83 Aligned_cols=248 Identities=20% Similarity=0.239 Sum_probs=214.8
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+++++||++|||||++|||++++++|+++|+ +|++++|+.++++...+++...+ .++.++++|+++.++++++++++
T Consensus 4 ~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (262)
T 3pk0_A 4 SMFDLQGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRA 82 (262)
T ss_dssp CTTCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHH
Confidence 45679999999999999999999999999995 99999999988888888886655 68999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 83 ~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------- 152 (262)
T 3pk0_A 83 VEEFGGIDVVCANAGVFPD-APLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG--SGRVVLTSSITGPI------- 152 (262)
T ss_dssp HHHHSCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS--SCEEEEECCSBTTT-------
T ss_pred HHHhCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEechhhcc-------
Confidence 9999999999999998754 4677889999999999999999999999999998765 38999999988752
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
.+.++...|+.||++++.|+++++.|+ ++.||+||+|+||+++|++......
T Consensus 153 ---------------------------~~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~ 204 (262)
T 3pk0_A 153 ---------------------------TGYPGWSHYGATKAAQLGFMRTAAIEL-APHKITVNAIMPGNIMTEGLLENGE 204 (262)
T ss_dssp ---------------------------BCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHTTCH
T ss_pred ---------------------------CCCCCChhhHHHHHHHHHHHHHHHHHH-HhhCcEEEEEEeCcCcCccccccCH
Confidence 145678899999999999999999999 7789999999999999986543221
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
. .........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+..
T Consensus 205 ~---~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~~ 252 (262)
T 3pk0_A 205 E---YIASMARSIPAGALGTPEDIGHLAAFLATKEAGYITGQAIAVDGGQV 252 (262)
T ss_dssp H---HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred H---HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 1 11122234456678899999999999999988889999999999753
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=314.00 Aligned_cols=249 Identities=17% Similarity=0.184 Sum_probs=211.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKF 81 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 68999999999999999999999999995 99999999999999888888778899999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|.++.. .|+||++||..+..
T Consensus 82 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~----------- 148 (257)
T 3imf_A 82 GRIDILINNAAGNFI-CPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGI-KGNIINMVATYAWD----------- 148 (257)
T ss_dssp SCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCC-CcEEEEECchhhcc-----------
Confidence 999999999998654 45668899999999999999999999999999954431 48999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|+++|++.++.|+..+.||+||+|+||+|+|++..........
T Consensus 149 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~ 204 (257)
T 3imf_A 149 ------------------------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEE 204 (257)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC-------C
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcccCHH
Confidence 45678899999999999999999999326699999999999999865432211111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+..
T Consensus 205 ~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 251 (257)
T 3imf_A 205 MAKRTIQSVPLGRLGTPEEIAGLAYYLCSDEAAYINGTCMTMDGGQH 251 (257)
T ss_dssp CSHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCCcc
Confidence 11122234456778899999999999999988889999999999753
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=314.96 Aligned_cols=251 Identities=22% Similarity=0.190 Sum_probs=212.0
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVL 101 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999995 999999999999988888887788999999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||+.....++.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+...
T Consensus 102 ~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~~-------- 171 (283)
T 3v8b_A 102 KFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG--GGAIVVVSSINGTRT-------- 171 (283)
T ss_dssp HHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTTB--------
T ss_pred HhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CceEEEEcChhhccC--------
Confidence 9999999999999875545677889999999999999999999999999998765 489999999887630
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
.+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++........
T Consensus 172 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 225 (283)
T 3v8b_A 172 -------------------------FTTPGATAYTATKAAQVAIVQQLALEL-GKHHIRVNAVCPGAIETNISDNTKLRH 225 (283)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECSBSSCTTCCTTBCC
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCcCCccccccccc
Confidence 134678899999999999999999999 888999999999999998664321110
Q ss_pred hh-h---hcchhHHhhh--cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FR-L---LFPPFQKYIT--KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~-~---~~~~~~~~~~--~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. . ........+. +++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 226 ~~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 279 (283)
T 3v8b_A 226 EEETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGSPVWIDGGQ 279 (283)
T ss_dssp HHHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred chhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCCEEEECcCc
Confidence 00 0 1111122233 67789999999999999998889999999999964
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-42 Score=316.49 Aligned_cols=250 Identities=20% Similarity=0.186 Sum_probs=215.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 83 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRF 83 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999995 99999999999998888888778899999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 84 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 150 (280)
T 3tox_A 84 GGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALG--GGSLTFTSSFVGHT----------- 150 (280)
T ss_dssp SCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCSBTTT-----------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEcChhhCc-----------
Confidence 99999999999875545677889999999999999999999999999999875 48999999988762
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
.+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++..........
T Consensus 151 -----------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~ 206 (280)
T 3tox_A 151 -----------------------AGFAGVAPYAASKAGLIGLVQALAVEL-GARGIRVNALLPGGTDTPANFANLPGAAP 206 (280)
T ss_dssp -----------------------BCCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBSSTTSGGGSTTCCT
T ss_pred -----------------------CCCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCCCCchhhhhccccCH
Confidence 145678899999999999999999999 78899999999999999975442211011
Q ss_pred hhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 282 LLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 282 ~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
... ......+.+++.+|+|+|++++||+++.+.++||+.+.+||+...
T Consensus 207 ~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~~~ 255 (280)
T 3tox_A 207 ETRGFVEGLHALKRIARPEEIAEAALYLASDGASFVTGAALLADGGASV 255 (280)
T ss_dssp HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred HHHHHHhccCccCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCCccc
Confidence 111 111233456788999999999999999888899999999998643
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=316.74 Aligned_cols=247 Identities=16% Similarity=0.156 Sum_probs=215.1
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+|+||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 21 ~~~l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 99 (271)
T 4ibo_A 21 IFDLGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDE 99 (271)
T ss_dssp GGCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 4679999999999999999999999999995 999999999888888888877778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 100 ~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iV~isS~~~~~--------- 167 (271)
T 4ibo_A 100 QGIDVDILVNNAGIQFR-KPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG--YGKIVNIGSLTSEL--------- 167 (271)
T ss_dssp HTCCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HCCCCCEEEECCCCCCC-CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhCC---------
Confidence 99999999999998754 4566889999999999999999999999999998765 38999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++..... ..
T Consensus 168 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~-~~ 219 (271)
T 4ibo_A 168 --------------------------ARATVAPYTVAKGGIKMLTRAMAAEW-AQYGIQANAIGPGYMLTDMNQALI-DN 219 (271)
T ss_dssp --------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHH-HC
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeccEeCcchhhcc-cC
Confidence 45678899999999999999999999 778999999999999998653311 10
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 220 ~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 267 (271)
T 4ibo_A 220 PEFDAWVKARTPAKRWGKPQELVGTAVFLSASASDYVNGQIIYVDGGM 267 (271)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEECCCe
Confidence 111122333456678899999999999999998888999999999974
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=317.35 Aligned_cols=248 Identities=18% Similarity=0.180 Sum_probs=210.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------------hHHHHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
.+++||++|||||++|||++++++|+++|+ +|++++|+ .+.++...+++...+.++.++++|+++.+
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 368999999999999999999999999995 99998887 66777777777767788999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+++++++++.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|.|.+++. .|+||++||..+
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~Iv~isS~~~ 181 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKR-GGSIVFTSSIGG 181 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CcEEEEECChhh
Confidence 9999999999999999999999998866555778899999999999999999999999999877542 489999999988
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. +.++...|+.||+|+++|+++++.|+ ++.||+||+|+||+|+
T Consensus 182 ~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~ 225 (299)
T 3t7c_A 182 LR-----------------------------------GAENIGNYIASKHGLHGLMRTMALEL-GPRNIRVNIVCPSSVA 225 (299)
T ss_dssp TS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBS
T ss_pred cc-----------------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcc
Confidence 74 55678899999999999999999999 7789999999999999
Q ss_pred CCcccccchh--hhh--------hh---cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 269 TTGLFREHIP--LFR--------LL---FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 269 t~~~~~~~~~--~~~--------~~---~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|++....... +.. .. .......+ .++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 226 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 296 (299)
T 3t7c_A 226 TPMLLNEPTYRMFRPDLENPTVEDFQVASRQMHVLP-IPYVEPADISNAILFLVSDDARYITGVSLPVDGGA 296 (299)
T ss_dssp STTTSSHHHHHHHCTTSSSCCHHHHHHHHHHHSSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CccccccchhhhhhhhhccchhhHHHHHhhhhcccC-cCCCCHHHHHHHHHHHhCcccccCcCCEEeeCCCc
Confidence 9976432110 000 00 00111112 56789999999999999998888999999999974
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-42 Score=312.81 Aligned_cols=247 Identities=17% Similarity=0.145 Sum_probs=211.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-C-CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-A-KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~-~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++.. . +.++.++++|+++.++++++++++.
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACE 82 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999995 999999999888888777754 3 3358999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 83 ~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 151 (265)
T 3lf2_A 83 RTLGCASILVNNAGQGRV-STFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRA--DAAIVCVNSLLASQ-------- 151 (265)
T ss_dssp HHHCSCSEEEECCCCCCC-BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTST--TEEEEEEEEGGGTS--------
T ss_pred HHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CeEEEEECCcccCC--------
Confidence 999999999999998654 4677889999999999999999999999999998875 48999999998874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|+++|+++++.|+ ++.||+||+|+||+|+|++.......
T Consensus 152 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 203 (265)
T 3lf2_A 152 ---------------------------PEPHMVATSAARAGVKNLVRSMAFEF-APKGVRVNGILIGLVESGQWRRRFEA 203 (265)
T ss_dssp ---------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTC
T ss_pred ---------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCcCchhhhhhhh
Confidence 55778899999999999999999999 77899999999999999865332110
Q ss_pred ------hhhhhcchhHH---hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 ------LFRLLFPPFQK---YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ------~~~~~~~~~~~---~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........... .+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 261 (265)
T 3lf2_A 204 REERELDWAQWTAQLARNKQIPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGGL 261 (265)
T ss_dssp ------CHHHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSSC
T ss_pred hhhhccCHHHHHHHHhhccCCCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCCC
Confidence 00111111222 56678899999999999999998889999999999975
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-42 Score=312.93 Aligned_cols=246 Identities=21% Similarity=0.182 Sum_probs=213.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAY 86 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999995 99999999988888888887777889999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.|.+++ |+||++||..+..
T Consensus 87 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 152 (264)
T 3ucx_A 87 GRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK---GAVVNVNSMVVRH----------- 152 (264)
T ss_dssp SCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT---CEEEEECCGGGGC-----------
T ss_pred CCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEECcchhcc-----------
Confidence 99999999999875555677889999999999999999999999999998764 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh--
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-- 279 (358)
+.+++..|+.||++++.|++.++.|+ .+.||+||+|+||+|+|++........
T Consensus 153 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 207 (264)
T 3ucx_A 153 ------------------------SQAKYGAYKMAKSALLAMSQTLATEL-GEKGIRVNSVLPGYIWGGTLKSYFEHQAG 207 (264)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEESSCBSHHHHHHHHHHHH
T ss_pred ------------------------CCCccHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccccHHHHHHhhhh
Confidence 55678899999999999999999999 788999999999999998653321110
Q ss_pred ------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 208 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 261 (264)
T 3ucx_A 208 KYGTSVEDIYNAAAAGSDLKRLPTEDEVASAILFMASDLASGITGQALDVNCGE 261 (264)
T ss_dssp HTTCCHHHHHHHHHTTSSSSSCCBHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred hcCCCHHHHHHHHhccCCcccCCCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 011111222345567889999999999999998888999999999874
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=308.74 Aligned_cols=245 Identities=16% Similarity=0.132 Sum_probs=212.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++|++|||||++|||++++++|+++|+ +|+++ +|+...++...+++...+.++.++++|+++.++++++++++.+.++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFG 81 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999996 77775 8998888888888877778899999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 82 ~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------------ 146 (258)
T 3oid_A 82 RLDVFVNNAASGVL-RPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNG--GGHIVSISSLGSIR------------ 146 (258)
T ss_dssp CCCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEEEEGGGTS------------
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhCC------------
Confidence 99999999998654 4566889999999999999999999999999999875 48999999998874
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||+++++|++.++.|+ .+.||+||+|+||+++|++..... .....
T Consensus 147 -----------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~-~~~~~ 201 (258)
T 3oid_A 147 -----------------------YLENYTTVGVSKAALEALTRYLAVEL-SPKQIIVNAVSGGAIDTDALKHFP-NREDL 201 (258)
T ss_dssp -----------------------BCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECCBCSGGGGGCT-THHHH
T ss_pred -----------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcChhhhhcc-cCHHH
Confidence 45678899999999999999999999 778999999999999998654321 11112
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
........+.+++.+|+|+|++++||+++.+.++||+.+.+||+...
T Consensus 202 ~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG~~~ 248 (258)
T 3oid_A 202 LEDARQNTPAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGGRSL 248 (258)
T ss_dssp HHHHHHHCTTSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTTGGG
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCccC
Confidence 22333455667889999999999999999988999999999998643
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=314.44 Aligned_cols=248 Identities=18% Similarity=0.159 Sum_probs=210.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC----------------hHHHHHHHHHhcCCCCceEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------------FLKAERAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~----------------~~~~~~~~~~~~~~~~~i~~~~~Dl 104 (358)
.+++||++|||||++|||++++++|+++|+ +|++++|+ .+.++...+.+...+.++.++++|+
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv 85 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDV 85 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCC
Confidence 368999999999999999999999999995 99999887 6677777777777778899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs 184 (358)
++.++++++++++.+.++++|+||||||.......+.+.+.++|++++++|+.+++.++++++|+|.+++. +|+||++|
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~is 164 (286)
T 3uve_A 86 RDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGR-GGSIILTS 164 (286)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCC-CcEEEEEC
Confidence 99999999999999999999999999998765545678899999999999999999999999999987542 38999999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecC
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 264 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~P 264 (358)
|..+.. +.++...|+.||+++++|++.++.|+ ++.||+||+|+|
T Consensus 165 S~~~~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~P 208 (286)
T 3uve_A 165 SVGGLK-----------------------------------AYPHTGHYVAAKHGVVGLMRAFGVEL-GQHMIRVNSVHP 208 (286)
T ss_dssp CGGGTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEE
T ss_pred chhhcc-----------------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEec
Confidence 999874 55778899999999999999999999 778999999999
Q ss_pred CcccCCcccccchh--hhh-----------hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 265 GCIATTGLFREHIP--LFR-----------LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 265 G~v~t~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|+|+|++....... +.. .........+ .++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 209 G~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~ 283 (286)
T 3uve_A 209 THVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQMFHTLP-IPWVEPIDISNAVLFFASDEARYITGVTLPIDAGS 283 (286)
T ss_dssp SSBSSTTTSSHHHHHHHCTTSSSCCHHHHHHHHHTTCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CcccCCcccccchhhhccccccccchhhHHHHHHhhhccC-CCcCCHHHHHHHHHHHcCccccCCcCCEEeECCcc
Confidence 99999976432110 000 0000111223 57789999999999999998889999999999974
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=313.26 Aligned_cols=249 Identities=20% Similarity=0.156 Sum_probs=213.5
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
...++++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++
T Consensus 25 ~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~ 103 (276)
T 3r1i_A 25 LDLFDLSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQM 103 (276)
T ss_dssp GGGGCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 345689999999999999999999999999995 9999999998888888888777778999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|.+++. +++||++||..+....
T Consensus 104 ~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~-~g~iv~isS~~~~~~~----- 176 (276)
T 3r1i_A 104 TGELGGIDIAVCNAGIVSV-QAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGL-GGTIITTASMSGHIIN----- 176 (276)
T ss_dssp HHHHSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTSCC-----
T ss_pred HHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcEEEEECchHhcccC-----
Confidence 9999999999999998754 35667899999999999999999999999999987642 3799999999876411
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
..++...|+.||++++.|+++++.|+ ++.||+||+|+||+|+|++.... .
T Consensus 177 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~-~ 226 (276)
T 3r1i_A 177 ----------------------------IPQQVSHYCTSKAAVVHLTKAMAVEL-APHQIRVNSVSPGYIRTELVEPL-A 226 (276)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTTGGG-G
T ss_pred ----------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccc-h
Confidence 11356789999999999999999999 77899999999999999865432 1
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ........+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 227 ~~---~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 273 (276)
T 3r1i_A 227 DY---HALWEPKIPLGRMGRPEELTGLYLYLASAASSYMTGSDIVIDGGY 273 (276)
T ss_dssp GG---HHHHGGGSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HH---HHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEECcCc
Confidence 11 111223445577899999999999999998889999999999975
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=313.05 Aligned_cols=248 Identities=23% Similarity=0.249 Sum_probs=210.0
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-------------ChHHHHHHHHHhcCCCCceEEEEecCCC
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLAS 106 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-------------~~~~~~~~~~~~~~~~~~i~~~~~Dl~~ 106 (358)
+.+++||++|||||++|||++++++|+++|+ +|++++| +.+.++...+.+...+.++.++++|+++
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 88 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD 88 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC
Confidence 3478999999999999999999999999995 9999988 6777788888887778889999999999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.++++++++++.+.++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++. +|+||++||.
T Consensus 89 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~ 166 (280)
T 3pgx_A 89 DAALRELVADGMEQFGRLDVVVANAGVLSW-GRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGN-GGSIVVVSSS 166 (280)
T ss_dssp HHHHHHHHHHHHHHHCCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-CCEEEEEcch
Confidence 999999999999999999999999999754 35668899999999999999999999999999987642 4899999999
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
.+.. +.++...|+.||+|++.|+++++.|+ ++.||+||+|+||+
T Consensus 167 ~~~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~ 210 (280)
T 3pgx_A 167 AGLK-----------------------------------ATPGNGHYSASKHGLTALTNTLAIEL-GEYGIRVNSIHPYS 210 (280)
T ss_dssp GGTS-----------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECS
T ss_pred hhcc-----------------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCc
Confidence 8874 55678899999999999999999999 77899999999999
Q ss_pred ccCCcccccchh-------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 267 IATTGLFREHIP-------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 267 v~t~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|+|++....... ............+. ++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 211 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 277 (280)
T 3pgx_A 211 VETPMIEPEAMMEIFARHPSFVHSFPPMPVQPN-GFMTADEVADVVAWLAGDGSGTLTGTQIPVDKGA 277 (280)
T ss_dssp BCSTTCCHHHHHHHHHHCGGGGGGSCCBTTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSCEEEESTTG
T ss_pred ccCcccchhhhhhhhhcCchhhhhhhhcccCCC-CCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 999976432110 00000001111222 5789999999999999999888999999999974
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=314.31 Aligned_cols=249 Identities=21% Similarity=0.227 Sum_probs=213.6
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
..+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++.. .+.++.++++|+++.++++++++++
T Consensus 14 ~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 92 (266)
T 4egf_A 14 GVLRLDGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRA 92 (266)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH
Confidence 34579999999999999999999999999995 999999999888887777755 4678999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++. +|+||++||..+..
T Consensus 93 ~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~------- 163 (266)
T 4egf_A 93 AEAFGGLDVLVNNAGISHP-QPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGE-GGAIITVASAAALA------- 163 (266)
T ss_dssp HHHHTSCSEEEEECCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS-------
T ss_pred HHHcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEEcchhhcc-------
Confidence 9999999999999998754 45668899999999999999999999999999987542 37999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|+++|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 164 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~ 214 (266)
T 4egf_A 164 ----------------------------PLPDHYAYCTSKAGLVMATKVLAREL-GPHGIRANSVCPTVVLTEMGQRVWG 214 (266)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBCSHHHHHHTC
T ss_pred ----------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCchhhhhcc
Confidence 55678899999999999999999999 7789999999999999986433211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ...........+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 215 ~-~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 4egf_A 215 D-EAKSAPMIARIPLGRFAVPHEVSDAVVWLASDAASMINGVDIPVDGGY 263 (266)
T ss_dssp S-HHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred C-hHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCCc
Confidence 1 111122333456677889999999999999998889999999999864
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=315.67 Aligned_cols=250 Identities=22% Similarity=0.237 Sum_probs=215.3
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.....++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+ .++.++++|+++.++++++++
T Consensus 33 ~~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~ 111 (293)
T 3rih_A 33 RKVMFDLSARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAAR 111 (293)
T ss_dssp -CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHH
T ss_pred cccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHH
Confidence 3445689999999999999999999999999995 99999999988888888887665 689999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .++||++||..+..
T Consensus 112 ~~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iV~isS~~~~~----- 183 (293)
T 3rih_A 112 TVVDAFGALDVVCANAGIFPE-ARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG--RGRVILTSSITGPV----- 183 (293)
T ss_dssp HHHHHHSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS--SCEEEEECCSBTTT-----
T ss_pred HHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEeChhhcc-----
Confidence 999999999999999998754 4677889999999999999999999999999998765 38999999988752
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
.+.++...|+.||++++.|++.++.|+ ++.||+||+|+||+|.|++....
T Consensus 184 -----------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~ 233 (293)
T 3rih_A 184 -----------------------------TGYPGWSHYGASKAAQLGFMRTAAIEL-APRGVTVNAILPGNILTEGLVDM 233 (293)
T ss_dssp -----------------------------BBCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHT
T ss_pred -----------------------------CCCCCCHHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEecCCCcCcchhhc
Confidence 144678899999999999999999999 77899999999999999865332
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
... .........+.+++.+|+|+|+.++||+++.+.+++|+.|.+||+..
T Consensus 234 ~~~---~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~a~~itG~~i~vdGG~~ 283 (293)
T 3rih_A 234 GEE---YISGMARSIPMGMLGSPVDIGHLAAFLATDEAGYITGQAIVVDGGQV 283 (293)
T ss_dssp CHH---HHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred cHH---HHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCcc
Confidence 211 11122234455678899999999999999988889999999999864
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=310.81 Aligned_cols=249 Identities=18% Similarity=0.218 Sum_probs=208.2
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------------hHHHHHHHHHhcCCCCceEEEEecCCC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLAS 106 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------------~~~~~~~~~~~~~~~~~i~~~~~Dl~~ 106 (358)
.+.++++|++|||||++|||++++++|+++|+ +|++++|+ .+.++...+.+...+.++.++++|+++
T Consensus 4 ~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~ 82 (281)
T 3s55_A 4 SMADFEGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKD 82 (281)
T ss_dssp --CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred cccccCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCC
Confidence 34579999999999999999999999999995 99999997 556666666666667789999999999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.++++++++++.+.++++|+||||||+... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||.
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~ 159 (281)
T 3s55_A 83 RAALESFVAEAEDTLGGIDIAITNAGISTI-ALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRN--YGRIVTVSSM 159 (281)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCC-CCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCh
Confidence 999999999999999999999999998754 4667889999999999999999999999999998765 4899999999
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
.+.. +.++...|+.||+|++.|+++++.|+ .+.||+||+|+||+
T Consensus 160 ~~~~-----------------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~ 203 (281)
T 3s55_A 160 LGHS-----------------------------------ANFAQASYVSSKWGVIGLTKCAAHDL-VGYGITVNAVAPGN 203 (281)
T ss_dssp GGGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECS
T ss_pred hhcC-----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCc
Confidence 8874 45678899999999999999999999 77899999999999
Q ss_pred ccCCcccccch-----hh-----hhhhcch--hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 267 IATTGLFREHI-----PL-----FRLLFPP--FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 267 v~t~~~~~~~~-----~~-----~~~~~~~--~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|+|++...... +. ....... .......++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 204 v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~ 276 (281)
T 3s55_A 204 IETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPFLKPEEVTRAVLFLVDEASSHITGTVLPIDAGA 276 (281)
T ss_dssp BCSTTTSSHHHHHC-------CCHHHHHHHHHHHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred ccCccccchhhhccccccccccchhHHHHHHHhhhccCcCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 99997643210 00 0000000 01111256789999999999999998888999999999974
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=307.02 Aligned_cols=241 Identities=22% Similarity=0.234 Sum_probs=209.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .+..++++|+++.++++++++++.+.
T Consensus 5 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 80 (248)
T 3op4_A 5 MNLEGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLG---DNGKGMALNVTNPESIEAVLKAITDE 80 (248)
T ss_dssp TCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---ccceEEEEeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 99999999988887777664 35788999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 81 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~---------- 147 (248)
T 3op4_A 81 FGGVDILVNNAGITRD-NLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR--QGRIINVGSVVGTM---------- 147 (248)
T ss_dssp HCCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcC----------
Confidence 9999999999998754 4566889999999999999999999999999998765 48999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+++|++..... .
T Consensus 148 -------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~-~-- 198 (248)
T 3op4_A 148 -------------------------GNAGQANYAAAKAGVIGFTKSMAREV-ASRGVTVNTVAPGFIETDMTKALN-D-- 198 (248)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSTTTTTSC-H--
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEeeCCCCCchhhhcC-H--
Confidence 55678899999999999999999999 778999999999999998654321 1
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|++++||+++.+.+++|+.+..||+.
T Consensus 199 ~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~~~~~itG~~i~vdgG~ 245 (248)
T 3op4_A 199 EQRTATLAQVPAGRLGDPREIASAVAFLASPEAAYITGETLHVNGGM 245 (248)
T ss_dssp HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCe
Confidence 11112233445677889999999999999998888999999999864
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=310.98 Aligned_cols=247 Identities=19% Similarity=0.173 Sum_probs=208.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-------------ChHHHHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-------------DFLKAERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-------------~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
+++||++|||||++|||++++++|+++|+ +|++++| +.+.++...+.+...+.++.++.+|+++.+
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~ 86 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFD 86 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 68999999999999999999999999995 9999988 666777777777666788999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+++++++++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+++. .|+||++||..+
T Consensus 87 ~v~~~~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~ 164 (277)
T 3tsc_A 87 RLRKVVDDGVAALGRLDIIVANAGVAAP-QAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGR-GGSIILISSAAG 164 (277)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-CCEEEEEccHhh
Confidence 9999999999999999999999998755 45668899999999999999999999999999987542 389999999998
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. +.++...|+.||++++.|++.++.|+ .+.||+||+|+||+|+
T Consensus 165 ~~-----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~ 208 (277)
T 3tsc_A 165 MK-----------------------------------MQPFMIHYTASKHAVTGLARAFAAEL-GKHSIRVNSVHPGPVN 208 (277)
T ss_dssp TS-----------------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBS
T ss_pred CC-----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeCCCc
Confidence 74 55678899999999999999999999 7889999999999999
Q ss_pred CCcccccchhh-------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 269 TTGLFREHIPL-------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 269 t~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|++........ .......+......++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 209 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 209 TPMGSGDMVTAVGQAMETNPQLSHVLTPFLPDWVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp SGGGSHHHHHHHHHHHHTCGGGTTTTCCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CCcccchhhhhhhhcccccHHHHHHhhhccCCCCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 98654321100 001111111111235789999999999999999889999999999974
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=311.82 Aligned_cols=247 Identities=15% Similarity=0.105 Sum_probs=212.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC---ceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~---~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+. ++.++++|+++.++++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999995 999999999888888887765544 7899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|.+++ .|+||++||..+..
T Consensus 86 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------- 156 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGG--GGSFVGISSIAASN------- 156 (281)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHS-------
T ss_pred HHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEeCHHHcC-------
Confidence 999999999999999854445677889999999999999999999999999998865 48999999998774
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 157 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~- 206 (281)
T 3svt_A 157 ----------------------------THRWFGAYGVTKSAVDHLMQLAADEL-GASWVRVNSIRPGLIRTDLVAAIT- 206 (281)
T ss_dssp ----------------------------CCTTCTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHH-
T ss_pred ----------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhhcc-
Confidence 45667899999999999999999999 778999999999999998653311
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 207 ~~~~~~~~~~~~~p~~r~~~~~dva~~~~~l~s~~~~~itG~~~~vdgG~ 256 (281)
T 3svt_A 207 ESAELSSDYAMCTPLPRQGEVEDVANMAMFLLSDAASFVTGQVINVDGGQ 256 (281)
T ss_dssp TCHHHHHHHHHHCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCCCCCEEEeCCCh
Confidence 11111122333455667889999999999999998888999999999975
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-41 Score=309.14 Aligned_cols=244 Identities=21% Similarity=0.209 Sum_probs=208.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.
T Consensus 25 ~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 100 (277)
T 3gvc_A 25 PDLAGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI---GCGAAACRVDVSDEQQIIAMVDACVAA 100 (277)
T ss_dssp --CTTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCcceEEEecCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999988888777766 467899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .|+||++||..+..
T Consensus 101 ~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~---------- 167 (277)
T 3gvc_A 101 FGGVDKLVANAGVVHL-ASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERG--GGAIVNLSSLAGQV---------- 167 (277)
T ss_dssp HSSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc----------
Confidence 9999999999999754 4566889999999999999999999999999998775 48999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 168 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~ 221 (277)
T 3gvc_A 168 -------------------------AVGGTGAYGMSKAGIIQLSRITAAEL-RSSGIRSNTLLPAFVDTPMQQTAMAMFD 221 (277)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTCC-
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCccCchHHHhhhcch
Confidence 55678899999999999999999999 7789999999999999986433111
Q ss_pred -hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 -PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 -~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+.+++.+|+|+|++++||+++.+..++|+.+..||+.
T Consensus 222 ~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 272 (277)
T 3gvc_A 222 GALGAGGARSMIARLQGRMAAPEEMAGIVVFLLSDDASMITGTTQIADGGT 272 (277)
T ss_dssp -----CCHHHHHHHHHSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhHHHHhhhhhhhccccCCCCHHHHHHHHHHHcCCccCCccCcEEEECCcc
Confidence 00111111222456678899999999999999998889999999999974
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=312.78 Aligned_cols=247 Identities=18% Similarity=0.184 Sum_probs=211.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++.. .+.++.++++|+++.++++++++++.+
T Consensus 23 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 23 DLLRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 358999999999999999999999999995 999999998887777666643 356899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ .|+||++||..+..
T Consensus 102 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 169 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFL-CPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDH--GGVIVNITATLGNR--------- 169 (277)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCSHHHH---------
T ss_pred HcCCCCEEEECCcCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCC---------
Confidence 99999999999997644 4566789999999999999999999999999987654 38999999998774
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+++|+++++.|+ ++.||+||+|+||+|+|++........
T Consensus 170 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~ 222 (277)
T 4fc7_A 170 --------------------------GQALQVHAGSAKAAVDAMTRHLAVEW-GPQNIRVNSLAPGPISGTEGLRRLGGP 222 (277)
T ss_dssp --------------------------TCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSSSHHHHHHSCC
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCEecchhhhhccCC
Confidence 45677899999999999999999999 778999999999999998543322111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 223 ~~~~~~~~~~~p~~r~~~p~dvA~~v~fL~s~~~~~itG~~i~vdGG~ 270 (277)
T 4fc7_A 223 QASLSTKVTASPLQRLGNKTEIAHSVLYLASPLASYVTGAVLVADGGA 270 (277)
T ss_dssp HHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHHHHHcCCccCCcCCCEEEECCCc
Confidence 112223334456678899999999999999998888999999999974
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=305.84 Aligned_cols=242 Identities=19% Similarity=0.210 Sum_probs=208.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASI---GKKARAIAADISDPGSVKALFAEIQAL 77 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999995 9999999998888777766 467899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++. .++||++||..+..
T Consensus 78 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 145 (247)
T 3rwb_A 78 TGGIDILVNNASIVPF-VAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGK-AGRVISIASNTFFA---------- 145 (247)
T ss_dssp HSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHH----------
T ss_pred CCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CcEEEEECchhhcc----------
Confidence 9999999999998754 45668899999999999999999999999999987642 38999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++.......
T Consensus 146 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~-- 197 (247)
T 3rwb_A 146 -------------------------GTPNMAAYVAAKGGVIGFTRALATEL-GKYNITANAVTPGLIESDGVKASPHN-- 197 (247)
T ss_dssp -------------------------TCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSGGG--
T ss_pred -------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCccccccChh--
Confidence 55678899999999999999999999 77899999999999999865432111
Q ss_pred hhhcchhHH-hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~-~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........ .+.+++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 198 -~~~~~~~~~~~~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~ 244 (247)
T 3rwb_A 198 -EAFGFVEMLQAMKGKGQPEHIADVVSFLASDDARWITGQTLNVDAGM 244 (247)
T ss_dssp -GGHHHHHHHSSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHHhcccccCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 11111122 34567789999999999999999889999999999974
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=312.52 Aligned_cols=245 Identities=18% Similarity=0.157 Sum_probs=210.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 107 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAI 107 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999995 9999999988888888777767788999999999999999999999887
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 108 -g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~Iv~isS~~~~~---------- 173 (275)
T 4imr_A 108 -APVDILVINASAQIN-ATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARK--WGRVVSIGSINQLR---------- 173 (275)
T ss_dssp -SCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred -CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCC----------
Confidence 899999999998754 4566889999999999999999999999999998765 48999999998873
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++.........
T Consensus 174 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~ 227 (275)
T 4imr_A 174 -------------------------PKSVVTAYAATKAAQHNLIQSQARDF-AGDNVLLNTLAPGLVDTDRNADRRAQDP 227 (275)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHHHHHCH
T ss_pred -------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeccccCcccccccccCh
Confidence 44567789999999999999999999 7789999999999999985533211111
Q ss_pred hhhcchhHHh-hhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKY-ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~-~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.......... +..++.+|+|+|++++||+++.+.++||+.+.+||+
T Consensus 228 ~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG 274 (275)
T 4imr_A 228 EGWDEYVRTLNWMGRAGRPEEMVGAALFLASEACSFMTGETIFLTGG 274 (275)
T ss_dssp HHHHHHHHHHSTTCSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred HHHHHHHhhcCccCCCcCHHHHHHHHHHHcCcccCCCCCCEEEeCCC
Confidence 1122222333 567788999999999999999888999999999985
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-41 Score=308.77 Aligned_cols=245 Identities=21% Similarity=0.223 Sum_probs=209.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 98 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEI---GSKAFGVRVDVSSAKDAESMVEKTTAK 98 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999988877776665 467899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 99 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 165 (277)
T 4dqx_A 99 WGRVDVLVNNAGFGTT-GNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNG--GGSIINTTSYTATS---------- 165 (277)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhCc----------
Confidence 9999999999998754 4667889999999999999999999999999998875 48999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 166 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~ 219 (277)
T 4dqx_A 166 -------------------------AIADRTAYVASKGAISSLTRAMAMDH-AKEGIRVNAVAPGTIDSPYFTKIFAEAK 219 (277)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHHTCS
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCchhhhhccccc
Confidence 55678899999999999999999999 7789999999999999986333211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.............+.+++.+|+|+|++++||+++.+.+++|+.|.+||+..
T Consensus 220 ~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 270 (277)
T 4dqx_A 220 DPAKLRSDFNARAVMDRMGTAEEIAEAMLFLASDRSRFATGSILTVDGGSS 270 (277)
T ss_dssp CHHHHHHHHHTTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSSS
T ss_pred chhHHHHHHHhcCcccCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCchh
Confidence 000111112223455678899999999999999988889999999999753
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=313.09 Aligned_cols=248 Identities=18% Similarity=0.146 Sum_probs=209.3
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
....+++||++|||||++|||++++++|+++|+ +|++++|+. ...+...+.+...+.++.++++|+++.++++++++
T Consensus 42 ~~~~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 120 (294)
T 3r3s_A 42 VGSGRLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVH 120 (294)
T ss_dssp CCCSTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH
Confidence 345678999999999999999999999999995 899988873 34555556666567789999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|.|.+. |+||++||..+..
T Consensus 121 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~----g~Iv~isS~~~~~----- 191 (294)
T 3r3s_A 121 KAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKG----ASIITTSSIQAYQ----- 191 (294)
T ss_dssp HHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTT----CEEEEECCGGGTS-----
T ss_pred HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcC----CEEEEECChhhcc-----
Confidence 9999999999999999987544566788999999999999999999999999998653 7999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++....
T Consensus 192 ------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~ 240 (294)
T 3r3s_A 192 ------------------------------PSPHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISG 240 (294)
T ss_dssp ------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHTT
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCcccccccc
Confidence 55678899999999999999999999 77899999999999999863221
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ............+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 241 ~~-~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 291 (294)
T 3r3s_A 241 GQ-TQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGGE 291 (294)
T ss_dssp TS-CGGGSTTTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred CC-CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 11 1111222333455677899999999999999999889999999999874
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=308.10 Aligned_cols=245 Identities=18% Similarity=0.175 Sum_probs=202.8
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
|....+++||++|||||++|||++++++|+++|+ +|++++|+.++++...+++ +.++.++++|+++.+++++++++
T Consensus 19 ~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~d~~~v~~~~~~ 94 (266)
T 3grp_A 19 PGSMFKLTGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADL---GKDVFVFSANLSDRKSIKQLAEV 94 (266)
T ss_dssp --CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CSSEEEEECCTTSHHHHHHHHHH
T ss_pred CcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceEEEEeecCCHHHHHHHHHH
Confidence 4455689999999999999999999999999995 9999999988887776655 46789999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .|+||++||..+..
T Consensus 95 ~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~Iv~isS~~~~~------ 165 (266)
T 3grp_A 95 AEREMEGIDILVNNAGITRD-GLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR--YGRIINITSIVGVV------ 165 (266)
T ss_dssp HHHHHTSCCEEEECCCCC------CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCC----------
T ss_pred HHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CcEEEEECCHHHcC------
Confidence 99999999999999998754 3566788999999999999999999999999998765 38999999998874
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+++|++.....
T Consensus 166 -----------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~ 215 (266)
T 3grp_A 166 -----------------------------GNPGQTNYCAAKAGLIGFSKALAQEI-ASRNITVNCIAPGFIKSAMTDKLN 215 (266)
T ss_dssp --------------------------------CHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHTCC
T ss_pred -----------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCcCCCchhhccC
Confidence 45678899999999999999999999 778999999999999998653321
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. .........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 216 ~~---~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3grp_A 216 EK---QKEAIMAMIPMKRMGIGEEIAFATVYLASDEAAYLTGQTLHINGGM 263 (266)
T ss_dssp HH---HHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred HH---HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 11 1112223445677889999999999999998888999999999874
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=312.62 Aligned_cols=246 Identities=22% Similarity=0.204 Sum_probs=208.4
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
...+++||++|||||++|||++++++|+++|+ +|++++|+.. ..+...+.+...+.++.++++|+++.++++++++++
T Consensus 41 ~~~~l~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 119 (291)
T 3ijr_A 41 GSEKLKGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQET 119 (291)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 34578999999999999999999999999995 9999999865 344555556666778999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|++ +++||++||..+..
T Consensus 120 ~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~------- 188 (291)
T 3ijr_A 120 VRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ----GDVIINTASIVAYE------- 188 (291)
T ss_dssp HHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT----TCEEEEECCTHHHH-------
T ss_pred HHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh----CCEEEEEechHhcC-------
Confidence 9999999999999998765556677899999999999999999999999999865 37999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 189 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~ 239 (291)
T 3ijr_A 189 ----------------------------GNETLIDYSATKGAIVAFTRSLSQSL-VQKGIRVNGVAPGPIWTPLIPSSFD 239 (291)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTHHHHHSC
T ss_pred ----------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCCCcCCcccccCC
Confidence 45677899999999999999999999 7789999999999999986533221
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ..........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 240 ~--~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 287 (291)
T 3ijr_A 240 E--KKVSQFGSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQMIHVNGGV 287 (291)
T ss_dssp H--HHHHHTTTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred H--HHHHHHHccCCCCCCcCHHHHHHHHHHHhCCccCCCcCCEEEECCCc
Confidence 1 11111222345567889999999999999998888999999999974
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=311.13 Aligned_cols=244 Identities=22% Similarity=0.205 Sum_probs=211.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999998888888777766778899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|.+++ .|+||++||..+..
T Consensus 103 ~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 169 (270)
T 3ftp_A 103 FGALNVLVNNAGITQD-QLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKAR--GGRIVNITSVVGSA---------- 169 (270)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhCC----------
Confidence 9999999999998754 3566889999999999999999999999999998765 48999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++..... .
T Consensus 170 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~-~-- 220 (270)
T 3ftp_A 170 -------------------------GNPGQVNYAAAKAGVAGMTRALAREI-GSRGITVNCVAPGFIDTDMTKGLP-Q-- 220 (270)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHHSC-H--
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCcchhhcC-H--
Confidence 55678899999999999999999999 778999999999999998543211 1
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 221 ~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 267 (270)
T 3ftp_A 221 EQQTALKTQIPLGRLGSPEDIAHAVAFLASPQAGYITGTTLHVNGGM 267 (270)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCCCcCCccCcEEEECCCc
Confidence 11111222345567889999999999999998888999999999864
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=307.07 Aligned_cols=243 Identities=20% Similarity=0.213 Sum_probs=208.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++.+|+++.++++++++++.+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASV---GRGAVHHVVDLTNEVSVRALIDFTIDT 82 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHH---CTTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999995 9999999988887777666 467899999999999999999999999
Q ss_pred CCCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... ...+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 83 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 151 (271)
T 3tzq_B 83 FGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAG--GGAIVNISSATAHA--------- 151 (271)
T ss_dssp HSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCHHHcC---------
Confidence 9999999999998733 44566789999999999999999999999999998875 48999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.|+++++.|+ .+.||+||+|+||+|+|++.......
T Consensus 152 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~- 203 (271)
T 3tzq_B 152 --------------------------AYDMSTAYACTKAAIETLTRYVATQY-GRHGVRCNAIAPGLVRTPRLEVGLPQ- 203 (271)
T ss_dssp --------------------------BCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTC---CH-
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEEeCCCcCccccccCCH-
Confidence 45677899999999999999999999 77899999999999999976533221
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|+.++||+++.+.++||+.+.+||+.
T Consensus 204 -~~~~~~~~~~~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 250 (271)
T 3tzq_B 204 -PIVDIFATHHLAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSGL 250 (271)
T ss_dssp -HHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCCc
Confidence 11111222345567889999999999999998888999999999983
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=310.57 Aligned_cols=245 Identities=21% Similarity=0.200 Sum_probs=208.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.++
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG 100 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6799999999999999999999999995 999999999888888888877778899999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHH--HHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD--DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~--~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++| .|++++ .|+||++||..+..
T Consensus 101 ~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~--~g~iV~isS~~~~~---------- 167 (279)
T 3sju_A 101 PIGILVNSAGRNGG-GETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAG--WGRIVNIASTGGKQ---------- 167 (279)
T ss_dssp SCCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHT--CEEEEEECCGGGTS----------
T ss_pred CCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcC--CcEEEEECChhhcc----------
Confidence 99999999998754 4566789999999999999999999999999 466654 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
+.++...|+.||+|+++|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 168 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~ 221 (279)
T 3sju_A 168 -------------------------GVMYAAPYTASKHGVVGFTKSVGFEL-AKTGITVNAVCPGYVETPMAERVREGYA 221 (279)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEESSBCSHHHHHHHHSCC
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCcccchHHHHHHhhhh
Confidence 55678899999999999999999999 7789999999999999986532110
Q ss_pred -----hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 -----PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 -----~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~a~~itG~~i~vdGG~ 276 (279)
T 3sju_A 222 RHWGVTEQEVHERFNAKIPLGRYSTPEEVAGLVGYLVTDAAASITAQALNVCGGL 276 (279)
T ss_dssp SSSCCCHHHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSSGGGGCCSCEEEESTTC
T ss_pred hcccCChHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCcCCcEEEECCCc
Confidence 00111111223345567889999999999999998888999999999874
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=306.10 Aligned_cols=246 Identities=17% Similarity=0.179 Sum_probs=206.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++||++|||||++|||++++++|+++|+ +|+++++ +.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TCCTTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 8777654 56667777777776778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++. |+||++||..+..
T Consensus 93 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----g~iv~isS~~~~~--------- 158 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSF-GHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG----GRIVLTSSNTSKD--------- 158 (270)
T ss_dssp HHSCCCEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT----CEEEEECCTTTTT---------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC----CeEEEEeCchhcc---------
Confidence 99999999999998754 466788999999999999999999999999999763 7999999987431
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
.+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+++|++......
T Consensus 159 -------------------------~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~ 212 (270)
T 3is3_A 159 -------------------------FSVPKHSLYSGSKGAVDSFVRIFSKDC-GDKKITVNAVAPGGTVTDMFHEVSHHY 212 (270)
T ss_dssp -------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTTHHHHGGGG
T ss_pred -------------------------CCCCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhhhhc
Confidence 245678899999999999999999999 7889999999999999986542110
Q ss_pred -h------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 -P------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 -~------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+ ............+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 269 (270)
T 3is3_A 213 IPNGTSYTAEQRQQMAAHASPLHRNGWPQDVANVVGFLVSKEGEWVNGKVLTLDGGA 269 (270)
T ss_dssp STTGGGSCHHHHHHHHHHHSTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred cccccccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEeCCCC
Confidence 0 0011111223446677889999999999999998888999999999863
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=300.80 Aligned_cols=237 Identities=19% Similarity=0.207 Sum_probs=204.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecC--CCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDL--ASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl--~~~~~i~~~~~~~ 117 (358)
..+++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... +.++.++.+|+ ++.++++++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 86 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRI 86 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHH
Confidence 368999999999999999999999999995 9999999998888777776544 33788999999 9999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||......++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 87 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~------- 157 (252)
T 3f1l_A 87 AVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSD--AGSLVFTSSSVGRQ------- 157 (252)
T ss_dssp HHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGTS-------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCC--CCEEEEECChhhcc-------
Confidence 999999999999999875545677889999999999999999999999999998875 48999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++.|++.++.|+ .+. |+||+|+||+++|++......
T Consensus 158 ----------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~-irvn~v~PG~v~t~~~~~~~~ 207 (252)
T 3f1l_A 158 ----------------------------GRANWGAYAASKFATEGMMQVLADEY-QQR-LRVNCINPGGTRTAMRASAFP 207 (252)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEECCSBSSHHHHHHCT
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-cEEEEEecCcccCchhhhhCC
Confidence 55678899999999999999999999 655 999999999999985422110
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.....++.+|+|++..++||+++.+.++||+.+..||+..
T Consensus 208 -----------~~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~ 247 (252)
T 3f1l_A 208 -----------TEDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRK 247 (252)
T ss_dssp -----------TCCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC--
T ss_pred -----------ccchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcC
Confidence 0112346799999999999999998899999999999753
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=307.78 Aligned_cols=276 Identities=31% Similarity=0.407 Sum_probs=214.3
Q ss_pred CccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 36 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 36 ~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
++...++++||++|||||++|||++++++|+++|+ +|++++|+..+++...+++ +.++.++++|+++.++++++++
T Consensus 7 ~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~v~~~~~ 82 (291)
T 3rd5_A 7 TAADLPSFAQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTM---AGQVEVRELDLQDLSSVRRFAD 82 (291)
T ss_dssp CGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTS---SSEEEEEECCTTCHHHHHHHHH
T ss_pred ChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---cCCeeEEEcCCCCHHHHHHHHH
Confidence 34455689999999999999999999999999995 9999999988877766555 4689999999999999998887
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++ +++|+||||||+.... .+.+.++|++++++|+.|++.++++++|.|.+ +||++||..+..+..
T Consensus 83 ~~----~~iD~lv~nAg~~~~~---~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~------riv~isS~~~~~~~~-- 147 (291)
T 3rd5_A 83 GV----SGADVLINNAGIMAVP---YALTVDGFESQIGTNHLGHFALTNLLLPRLTD------RVVTVSSMAHWPGRI-- 147 (291)
T ss_dssp TC----CCEEEEEECCCCCSCC---CCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE------EEEEECCGGGTTCCC--
T ss_pred hc----CCCCEEEECCcCCCCc---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------heeEeechhhccCCC--
Confidence 65 6899999999987432 45688999999999999999999999999874 999999998875321
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCC--cEEEEecCCcccCCccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETG--IAFASLYPGCIATTGLF 273 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~g--I~v~~v~PG~v~t~~~~ 273 (358)
++.++ ..+..++++...|+.||+|++.|++.+++++ .+.| |+||+|+||+|+|++..
T Consensus 148 ------~~~~~--------------~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~g~~i~v~~v~PG~v~T~~~~ 206 (291)
T 3rd5_A 148 ------NLEDL--------------NWRSRRYSPWLAYSQSKLANLLFTSELQRRL-TAAGSPLRALAAHPGYSHTNLQG 206 (291)
T ss_dssp ------CSSCT--------------TCSSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEECCSGGGSCC--
T ss_pred ------Ccccc--------------cccccCCCCcchHHHHHHHHHHHHHHHHHHH-hhCCCCEEEEEeeCCCCcccccc
Confidence 11111 0122356788999999999999999999999 6556 99999999999998664
Q ss_pred ccchhhhhhhcchhHHhhhcCc-cchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccc--cccchhccCHHHHHHHHHH
Q 018331 274 REHIPLFRLLFPPFQKYITKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE--NQLSQEASDVEKARKVWEI 350 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~w~~ 350 (358)
...... .......+..+. .+|+++|+.++||++++ ..+|+++..||+....+ ........+.+.++++|+.
T Consensus 207 ~~~~~~----~~~~~~~~~~~~~~~~~~~A~~~~~l~~~~--~~~G~~~~vdgG~~~~~~~~~~~~~~~~~~~~~~lw~~ 280 (291)
T 3rd5_A 207 ASGRKL----GDALMSAATRVVATDADFGARQTLYAASQD--LPGDSFVGPRFGYLGRTQPVGRSRRAKDAGMAAALWAL 280 (291)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHSC--CCTTCEEEETTSSSSCEEECCCCTGGGCHHHHHHHHHH
T ss_pred ccchHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC--CCCCceeCCcccccCccccCCCCcccCCHHHHHHHHHH
Confidence 422111 111122222333 46999999999999984 78999999998765422 2335678899999999999
Q ss_pred HHHHhcC
Q 018331 351 SEKLVGL 357 (358)
Q Consensus 351 ~~~~~~~ 357 (358)
+++++++
T Consensus 281 ~~~~~~~ 287 (291)
T 3rd5_A 281 SEQLTKT 287 (291)
T ss_dssp HHHHHTC
T ss_pred HHHHHcc
Confidence 9999876
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=307.38 Aligned_cols=250 Identities=19% Similarity=0.197 Sum_probs=204.3
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
....++++|++|||||++|||++++++|+++|+ +|++++| +.+.++...+++... +.++.++++|+++.++++++++
T Consensus 18 ~~~~~l~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~ 96 (281)
T 3v2h_A 18 LYFQSMMTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMA 96 (281)
T ss_dssp ----CCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHH
T ss_pred hhhhccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHH
Confidence 335679999999999999999999999999995 9999999 566677777766554 5689999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 97 ~~~~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----- 168 (281)
T 3v2h_A 97 MVADRFGGADILVNNAGVQFV-EKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG--WGRIINIASAHGLV----- 168 (281)
T ss_dssp HHHHHTSSCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----
T ss_pred HHHHHCCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCccccc-----
Confidence 999999999999999998754 3566789999999999999999999999999998765 48999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++....
T Consensus 169 ------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~ 217 (281)
T 3v2h_A 169 ------------------------------ASPFKSAYVAAKHGIMGLTKTVALEV-AESGVTVNSICPGYVLTPLVEKQ 217 (281)
T ss_dssp ------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC------
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEECCCCcCcchhhh
Confidence 45677899999999999999999999 77899999999999999865432
Q ss_pred chhhhh--------hhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFR--------LLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~--------~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... ... ......+.+++.+|+|+|++++||+++.+..++|+.+.+||+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~~i~vdGG~ 278 (281)
T 3v2h_A 218 IPDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGTHVSMDGGW 278 (281)
T ss_dssp ----------------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSCEEEESTTG
T ss_pred cchhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCcEEEECCCc
Confidence 211100 000 1122345577899999999999999998888999999999863
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=308.16 Aligned_cols=241 Identities=20% Similarity=0.203 Sum_probs=208.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||++|||++++++|+++|+ +|++++| +...++...+++...+.++.++++|+++.++++++++++.+
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~ 102 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIE 102 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 8888777 66677777777776677899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 103 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 170 (269)
T 4dmm_A 103 RWGRLDVLVNNAGITRD-TLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR--SGRIINIASVVGEM--------- 170 (269)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCHHHHH---------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcC---------
Confidence 99999999999998754 3566789999999999999999999999999998765 48999999998774
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 171 --------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~-- 221 (269)
T 4dmm_A 171 --------------------------GNPGQANYSAAKAGVIGLTKTVAKEL-ASRGITVNAVAPGFIATDMTSELAA-- 221 (269)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBTTSCSCHHHH--
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEECCCcCcccccccH--
Confidence 45678899999999999999999999 7789999999999999986543211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcC-CCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~G~~~~~d~~~ 327 (358)
.......+.+++.+|+|+|++++||+++ .+.+++|+.+.+||+.
T Consensus 222 ----~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~~i~vdGG~ 266 (269)
T 4dmm_A 222 ----EKLLEVIPLGRYGEAAEVAGVVRFLAADPAAAYITGQVINIDGGL 266 (269)
T ss_dssp ----HHHGGGCTTSSCBCHHHHHHHHHHHHHCGGGGGCCSCEEEESTTS
T ss_pred ----HHHHhcCCCCCCCCHHHHHHHHHHHhCCcccCCCcCCEEEECCCe
Confidence 1222344556789999999999999998 5567999999999864
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-41 Score=305.72 Aligned_cols=246 Identities=17% Similarity=0.169 Sum_probs=201.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++||++|||||++|||++++++|+++|+ +|+++ +|+.+..+...+++...+.++.++++|+++.++++++++++.+
T Consensus 4 ~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (259)
T 3edm_A 4 QRFTNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAAD 82 (259)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 77777 6677777777777777778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|++. |+||++||..+..
T Consensus 83 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~isS~~~~~--------- 149 (259)
T 3edm_A 83 KFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKG----GAIVTFSSQAGRD--------- 149 (259)
T ss_dssp HHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCHHHHH---------
T ss_pred HhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CEEEEEcCHHhcc---------
Confidence 999999999999987555577789999999999999999999999999999773 7999999988762
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
.+.++...|+.||+|+++|++.++.|+ .+. |+||+|+||+++|++......+
T Consensus 150 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~-I~vn~v~PG~v~T~~~~~~~~~- 201 (259)
T 3edm_A 150 -------------------------GGGPGALAYATSKGAVMTFTRGLAKEV-GPK-IRVNAVCPGMISTTFHDTFTKP- 201 (259)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHH-TTT-CEEEEEEECCBCC----------
T ss_pred -------------------------CCCCCcHHHHHHHHHHHHHHHHHHHHH-CCC-CEEEEEEECCCcCcccccccCh-
Confidence 144678899999999999999999999 654 9999999999999865432211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
..........+.+++.+|+|+|++++||+++.+.++||++|.+||+...
T Consensus 202 -~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~~i~vdGg~~~ 250 (259)
T 3edm_A 202 -EVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGACYDINGGVLF 250 (259)
T ss_dssp --------------CCBCHHHHHHHHHHHHSGGGTTCCSCEEEESBCSSB
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCCcCC
Confidence 1112223345567788999999999999999888899999999998654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=303.00 Aligned_cols=241 Identities=17% Similarity=0.200 Sum_probs=206.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.+
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEF---GPRVHALRSDIADLNEIAVLGAAAGQTL 80 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCcceEEEccCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999995 9999999998888777766 3578999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++. |+||++||..+..
T Consensus 81 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----g~iv~isS~~~~~----------- 144 (255)
T 4eso_A 81 GAIDLLHINAGVSEL-EPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREG----GSIVFTSSVADEG----------- 144 (255)
T ss_dssp SSEEEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCGGGSS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC----CEEEEECChhhcC-----------
Confidence 999999999998754 466788999999999999999999999999998763 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--L 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--~ 279 (358)
+.++...|+.||+++++|++.++.|+ .+.||+||+|+||+++|++....... .
T Consensus 145 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 199 (255)
T 4eso_A 145 ------------------------GHPGMSVYSASKAALVSFASVLAAEL-LPRGIRVNSVSPGFIDTPTKGVAGITEAE 199 (255)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEEECSBCCSSTTCTTSCHHH
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEecCcccCcccccccCChhh
Confidence 55678899999999999999999999 77899999999999999965432111 1
Q ss_pred hhhh-cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 280 FRLL-FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 280 ~~~~-~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.... .......+.+++.+|+|+|++++||+++ +.++||+.+.+||+..
T Consensus 200 ~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGG~~ 248 (255)
T 4eso_A 200 RAEFKTLGDNITPMKRNGTADEVARAVLFLAFE-ATFTTGAKLAVDGGLG 248 (255)
T ss_dssp HHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHHT-CTTCCSCEEEESTTTT
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHHHHHcCc-CcCccCCEEEECCCcc
Confidence 1111 1122344667788999999999999998 7789999999999753
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=300.65 Aligned_cols=249 Identities=17% Similarity=0.123 Sum_probs=207.0
Q ss_pred ccCcccCCCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
+...+++++|++|||||+ +|||++++++|+++|+ +|++++|+.+.++...+++... +.++.++++|+++.+++++++
T Consensus 14 ~~~~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~ 92 (266)
T 3o38_A 14 IDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALI 92 (266)
T ss_dssp CCCCSTTTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHH
T ss_pred cccccCCCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHH
Confidence 334567999999999998 5999999999999995 9999999998888888877554 468999999999999999999
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.++.. +++||++||..+..
T Consensus 93 ~~~~~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~---- 166 (266)
T 3o38_A 93 TQTVEKAGRLDVLVNNAGLGGQ-TPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDH-GGVIVNNASVLGWR---- 166 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSC-CEEEEEECCGGGTC----
T ss_pred HHHHHHhCCCcEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEeCCHHHcC----
Confidence 9999999999999999998754 45667899999999999999999999999999987632 48999999998874
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+++|++...
T Consensus 167 -------------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~ 214 (266)
T 3o38_A 167 -------------------------------AQHSQSHYAAAKAGVMALTRCSAIEA-VEFGVRINAVSPSIARHKFLEK 214 (266)
T ss_dssp -------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC-----
T ss_pred -------------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeCCcccchhhhc
Confidence 55678899999999999999999999 7789999999999999986544
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.... ..........+.+++.+|+|+|+.++||+++.+..++|+++.+||+
T Consensus 215 ~~~~--~~~~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 215 TSSS--ELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp --------------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred cCcH--HHHHHHHhcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 2211 1111222334556788999999999999999888899999999986
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=306.67 Aligned_cols=242 Identities=18% Similarity=0.134 Sum_probs=199.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.+++|++|||||++|||++++++|+++|+ +|+++ .|+...++...+++...+.++.++++|+++.++++++++++.+
T Consensus 23 m~~~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 101 (267)
T 3u5t_A 23 MMETNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEE 101 (267)
T ss_dssp ----CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999999996 77776 6666677777777776778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|++.+++|+.|++.++++++|.|++. |+||++||..+..
T Consensus 102 ~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~isS~~~~~--------- 167 (267)
T 3u5t_A 102 AFGGVDVLVNNAGIMPL-TTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG----GRIINMSTSQVGL--------- 167 (267)
T ss_dssp HHSCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCTHHHH---------
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC----CeEEEEeChhhcc---------
Confidence 99999999999998754 466788999999999999999999999999999763 7999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|++.|+++++.|+ ++.||+||+|+||+|+|++........
T Consensus 168 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 220 (267)
T 3u5t_A 168 --------------------------LHPSYGIYAAAKAGVEAMTHVLSKEL-RGRDITVNAVAPGPTATDLFLEGKSDE 220 (267)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECCBC-----------
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEEECCCcCccccccCCHH
Confidence 45677899999999999999999999 788999999999999999754322111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+
T Consensus 221 --~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 221 --VRDRFAKLAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp --CHHHHHTSSTTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred --HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 111122234556788999999999999999988999999999986
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-40 Score=305.11 Aligned_cols=248 Identities=18% Similarity=0.159 Sum_probs=204.3
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------------hHHHHHHHHHhcCCCCceEEEEecCCCH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASL 107 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~ 107 (358)
..+++||++|||||++|||++++++|+++|+ +|++++|+ .+.++...+.+...+.++.++++|+++.
T Consensus 8 ~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 86 (278)
T 3sx2_A 8 EGPLTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDR 86 (278)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCH
Confidence 3478999999999999999999999999995 99999987 6666666666666677899999999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
++++++++++.+.++++|+||||||..... .+.++|++.+++|+.+++.++++++|+|.+++. +|+||++||..
T Consensus 87 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~-----~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~ 160 (278)
T 3sx2_A 87 ESLSAALQAGLDELGRLDIVVANAGIAPMS-----AGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGT-GGSIVLISSSA 160 (278)
T ss_dssp HHHHHHHHHHHHHHCCCCEEEECCCCCCCS-----STHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGG
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCC-----CCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEEccHH
Confidence 999999999999999999999999986432 258999999999999999999999999987532 48999999998
Q ss_pred CCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
+..+. ..+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+|
T Consensus 161 ~~~~~-------------------------------~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v 208 (278)
T 3sx2_A 161 GLAGV-------------------------------GSADPGSVGYVAAKHGVVGLMRVYANLL-AGQMIRVNSIHPSGV 208 (278)
T ss_dssp GTSCC-------------------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCB
T ss_pred hcCCC-------------------------------ccCCCCchHhHHHHHHHHHHHHHHHHHH-hccCcEEEEEecCCc
Confidence 87411 0123678899999999999999999999 778999999999999
Q ss_pred cCCcccccchhh-hh---hhc----chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 268 ATTGLFREHIPL-FR---LLF----PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 268 ~t~~~~~~~~~~-~~---~~~----~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+|++........ .. ... ......+ .++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 209 ~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 275 (278)
T 3sx2_A 209 ETPMINNEFTREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGVTLPVDAGF 275 (278)
T ss_dssp SSTTTSSHHHHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred cCccchhhhHHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCCEEeECCCc
Confidence 999765422110 00 000 0111122 56789999999999999998888999999999864
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-41 Score=309.42 Aligned_cols=267 Identities=13% Similarity=0.105 Sum_probs=215.2
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||+ +|||++++++|+++|+ +|++++|+.+ .+...+++.....++.++++|+++.++++++++++.+
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 80 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHH
Confidence 4789999999999 9999999999999995 9999999875 3333333322223478999999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||.... ..++.+.+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..
T Consensus 81 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~------ 150 (275)
T 2pd4_A 81 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN----GASVLTLSYLGSTK------ 150 (275)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEecchhcC------
Confidence 99999999999998743 134567899999999999999999999999999975 27999999988763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.++ .+.||+||+|+||+|+|++... .
T Consensus 151 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~-~ 199 (275)
T 2pd4_A 151 -----------------------------YMAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSG-I 199 (275)
T ss_dssp -----------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGG-S
T ss_pred -----------------------------CCCCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCccccchhhh-c
Confidence 44567789999999999999999999 7789999999999999986432 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHHHHH
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEK 353 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 353 (358)
..............+..++.+|+|+|+.++||+++....++|+++.+||.... ........+.+.++++|+.+++
T Consensus 200 ~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgg~~~--~~~~~~~~~~~~~~~lw~~s~~ 274 (275)
T 2pd4_A 200 ADFRMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYHV--MGMGAVEEKDNKATLLWDLHKE 274 (275)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG--BSSCCCTTCTTTTCCHHHHSSC
T ss_pred cccHHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccc--CCCChhhcCcccchhhhhhhcc
Confidence 11111111122233456678999999999999998877899999999987532 2344556788899999998864
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=300.60 Aligned_cols=245 Identities=18% Similarity=0.146 Sum_probs=208.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++++|+++.++++++++++.+.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 79 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG---PAAYAVQMDVTRQDSIDAAIAATVEH 79 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC---CCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 368899999999999999999999999995 99999999888887777663 57899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++. +|+||++||..+..
T Consensus 80 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 147 (259)
T 4e6p_A 80 AGGLDILVNNAALFDL-APIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGR-GGKIINMASQAGRR---------- 147 (259)
T ss_dssp SSSCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CeEEEEECChhhcc----------
Confidence 9999999999998754 35668899999999999999999999999999987542 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.......+
T Consensus 148 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~ 201 (259)
T 4e6p_A 148 -------------------------GEALVAIYCATKAAVISLTQSAGLDL-IKHRINVNAIAPGVVDGEHWDGVDALFA 201 (259)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTHHHHHHHHH
T ss_pred -------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEECCCccchhhhhhhhhh
Confidence 55678899999999999999999999 788999999999999998653321000
Q ss_pred -------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdgG~ 256 (259)
T 4e6p_A 202 RYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQTYNVDGGN 256 (259)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSCEEEESTTS
T ss_pred hhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECcCh
Confidence 001111223445677899999999999999998888999999999864
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-40 Score=302.72 Aligned_cols=242 Identities=19% Similarity=0.202 Sum_probs=207.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++||++|||||++|||++++++|+++|+ +|+++++ +.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVE 105 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999999999996 8887755 45667777777776678899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++ +++||++||..+..
T Consensus 106 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~----~g~iv~isS~~~~~--------- 171 (271)
T 3v2g_A 106 ALGGLDILVNSAGIWHS-APLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD----GGRIITIGSNLAEL--------- 171 (271)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT----TCEEEEECCGGGTC---------
T ss_pred HcCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc----CCEEEEEeChhhcc---------
Confidence 99999999999998754 46678899999999999999999999999999975 37999999977653
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
.+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++..... .
T Consensus 172 -------------------------~~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~-~- 223 (271)
T 3v2g_A 172 -------------------------VPWPGISLYSASKAALAGLTKGLARDL-GPRGITVNIVHPGSTDTDMNPADG-D- 223 (271)
T ss_dssp -------------------------CCSTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSSSSCSSC-S-
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCCCcCCcccccc-h-
Confidence 235678899999999999999999999 778999999999999998654321 1
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++.+|+|+|+.++||+++.+.++||+.+.+||+.
T Consensus 224 --~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 269 (271)
T 3v2g_A 224 --HAEAQRERIATGSYGEPQDIAGLVAWLAGPQGKFVTGASLTIDGGA 269 (271)
T ss_dssp --SHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred --hHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCccCCEEEeCcCc
Confidence 1112233445667889999999999999998889999999999864
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=303.96 Aligned_cols=244 Identities=18% Similarity=0.198 Sum_probs=206.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++||++|||||++|||++++++|+++|+ +|++++|++ ..+...+++...+.++.++.+|+++.++++++.+.+ +.
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~~ 103 (273)
T 3uf0_A 27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTD-GVKEVADEIADGGGSAEAVVADLADLEGAANVAEEL-AA 103 (273)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESST-HHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHH-HH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHH-HHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHH-Hh
Confidence 578999999999999999999999999996 899999764 455666666666778999999999999999995544 45
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... .++.+.+.++|++.+++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 104 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~---------- 170 (273)
T 3uf0_A 104 TRRVDVLVNNAGIIAR-APAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG--SGRIVTIASMLSFQ---------- 170 (273)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred cCCCcEEEECCCCCCC-CCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchHhcC----------
Confidence 6899999999998754 4667889999999999999999999999999998765 48999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|.|++..... ...
T Consensus 171 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~-~~~ 223 (273)
T 3uf0_A 171 -------------------------GGRNVAAYAASKHAVVGLTRALASEW-AGRGVGVNALAPGYVVTANTAALR-ADD 223 (273)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHH-TSH
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCchhhcc-cCH
Confidence 55678899999999999999999999 778999999999999998653311 111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|++++||+++.+..++|+.+.+||+.
T Consensus 224 ~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~a~~itG~~i~vdGG~ 270 (273)
T 3uf0_A 224 ERAAEITARIPAGRWATPEDMVGPAVFLASDAASYVHGQVLAVDGGW 270 (273)
T ss_dssp HHHHHHHHHSTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 12222334556678899999999999999998888999999999864
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-40 Score=299.43 Aligned_cols=242 Identities=20% Similarity=0.194 Sum_probs=207.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+.+|++|||||++|||++++++|+++|+ +|++++| +.+.++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQF 80 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999995 8877766 5567777777777677889999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 81 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 146 (246)
T 3osu_A 81 GSLDVLVNNAGITRD-NLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR--SGAIINLSSVVGAV----------- 146 (246)
T ss_dssp SCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcC-----------
Confidence 999999999998754 4567889999999999999999999999999998765 48999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||++.|++........
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~-- 199 (246)
T 3osu_A 147 ------------------------GNPGQANYVATKAGVIGLTKSAAREL-ASRGITVNAVAPGFIVSDMTDALSDEL-- 199 (246)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCCSCSCHHH--
T ss_pred ------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECCCcCCcccccCHHH--
Confidence 45678899999999999999999999 778999999999999998654322111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+.+++.+|+|+|++++||+++++.+++|+.+..||+.
T Consensus 200 -~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdgG~ 244 (246)
T 3osu_A 200 -KEQMLTQIPLARFGQDTDIANTVAFLASDKAKYITGQTIHVNGGM 244 (246)
T ss_dssp -HHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 112223445677889999999999999998888999999999863
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=297.64 Aligned_cols=243 Identities=19% Similarity=0.215 Sum_probs=211.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+...++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAEN 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999988888888887777889999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 81 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 146 (247)
T 3lyl_A 81 LAIDILVNNAGITRD-NLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKR--WGRIISIGSVVGSA----------- 146 (247)
T ss_dssp CCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-----------
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcc-----------
Confidence 999999999998754 3566789999999999999999999999999998765 38999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.+++++ .+.||+||+|+||++.|++.........
T Consensus 147 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~- 200 (247)
T 3lyl_A 147 ------------------------GNPGQTNYCAAKAGVIGFSKSLAYEV-ASRNITVNVVAPGFIATDMTDKLTDEQK- 200 (247)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTTSCHHHH-
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCcEecccchhccHHHH-
Confidence 45678899999999999999999999 7789999999999999986543211111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.......+.+++.+|+|+|+.+++|+++.+..++|+.+.+||+.
T Consensus 201 --~~~~~~~~~~~~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG~ 244 (247)
T 3lyl_A 201 --SFIATKIPSGQIGEPKDIAAAVAFLASEEAKYITGQTLHVNGGM 244 (247)
T ss_dssp --HHHHTTSTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred --HHHhhcCCCCCCcCHHHHHHHHHHHhCCCcCCccCCEEEECCCE
Confidence 11122345567889999999999999998888999999999864
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-40 Score=300.49 Aligned_cols=247 Identities=20% Similarity=0.191 Sum_probs=205.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 95 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHV 95 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999988887777777655678999999999999999999999999
Q ss_pred C-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+ +++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 96 ~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 163 (273)
T 1ae1_A 96 FDGKLNILVNNAGVVIH-KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFS--------- 163 (273)
T ss_dssp TTSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTS---------
T ss_pred cCCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcCHhhcC---------
Confidence 8 899999999998744 3566889999999999999999999999999998764 38999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.++...|+.||++++.|++.++.|+ ++.||+||+|+||+++|++......
T Consensus 164 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 216 (273)
T 1ae1_A 164 --------------------------ALPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKN 216 (273)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-----------
T ss_pred --------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCchhhhhhhcc
Confidence 44677899999999999999999999 7789999999999999986533211
Q ss_pred h-hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 P-LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~-~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+ ............+.+++.+|+|+|+.++||+++....++|+.+.+||+.
T Consensus 217 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 267 (273)
T 1ae1_A 217 PHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 267 (273)
T ss_dssp --CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEECCCc
Confidence 0 0011111223345567889999999999999988888999999999974
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-40 Score=305.31 Aligned_cols=247 Identities=21% Similarity=0.188 Sum_probs=195.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||++++++|+++|+ +|++++| +.+.++...+++...+.++.++++|+++.++++++++++.+
T Consensus 25 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 103 (280)
T 4da9_A 25 TQKARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVA 103 (280)
T ss_dssp SCCCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHH
T ss_pred hccCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999996 8888885 77777777777776678899999999999999999999999
Q ss_pred cCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCC
Q 018331 120 SGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.++++|+||||||... ....+.+.+.++|++.+++|+.|++.++++++|.|++++. ..|+||++||..+..
T Consensus 104 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~------- 176 (280)
T 4da9_A 104 EFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM------- 176 (280)
T ss_dssp HHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----------
T ss_pred HcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc-------
Confidence 9999999999999842 2345668899999999999999999999999999987531 247999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++......
T Consensus 177 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~ 227 (280)
T 4da9_A 177 ----------------------------TSPERLDYCMSKAGLAAFSQGLALRL-AETGIAVFEVRPGIIRSDMTAAVSG 227 (280)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC--------
T ss_pred ----------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEeecCCcCCchhhcch
Confidence 45677899999999999999999999 8889999999999999986543211
Q ss_pred hhhhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... .... ..+.+++.+|+|+|++++||+++.+.+++|+.+.+||+.
T Consensus 228 ~~~~---~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 275 (280)
T 4da9_A 228 KYDG---LIESGLVPMRRWGEPEDIGNIVAGLAGGQFGFATGSVIQADGGL 275 (280)
T ss_dssp -----------------CCBCHHHHHHHHHHHHTSTTGGGTTCEEEESTTC
T ss_pred hHHH---HHhhcCCCcCCcCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 1111 1111 345677889999999999999999888999999999974
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-41 Score=308.45 Aligned_cols=246 Identities=12% Similarity=0.110 Sum_probs=199.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC---hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~---~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+ .+.++...+++...+.++.++++|+++.++++++++++
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 85 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFA 85 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence 578999999999999999999999999996 88887664 45666777777777788999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+ .|+||++||..+..
T Consensus 86 ~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~iv~isS~~~~~------- 153 (262)
T 3ksu_A 86 EKEFGKVDIAINTVGKVLK-KPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNP----NGHIITIATSLLAA------- 153 (262)
T ss_dssp HHHHCSEEEEEECCCCCCS-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEE----EEEEEEECCCHHHH-------
T ss_pred HHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcC----CCEEEEEechhhcc-------
Confidence 9999999999999998755 46668899999999999999999999999999954 37999999988763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 154 ----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~ 204 (262)
T 3ksu_A 154 ----------------------------YTGFYSTYAGNKAPVEHYTRAASKEL-MKQQISVNAIAPGPMDTSFFYGQET 204 (262)
T ss_dssp ----------------------------HHCCCCC-----CHHHHHHHHHHHHT-TTTTCEEEEEEECCCCTHHHHTCC-
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCccccccCc
Confidence 33556789999999999999999999 7889999999999999986543221
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE 331 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~ 331 (358)
.. .........+.+++.+|+|+|++++||+++ +.++||+.+.+||....+.
T Consensus 205 ~~--~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGg~~~~~ 255 (262)
T 3ksu_A 205 KE--STAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTIFANGGYTTRE 255 (262)
T ss_dssp -------------CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEEEESTTCCCC-
T ss_pred hH--HHHHHHhcCcccCCCCHHHHHHHHHHHcCC-CCCccCCEEEECCCccCCC
Confidence 11 111122334556788999999999999998 7789999999999875543
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=303.96 Aligned_cols=263 Identities=12% Similarity=0.129 Sum_probs=200.6
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||+ +|||+++++.|+++|+ +|++++|+.. .+...+++.....++.++.+|+++.++++++++++.+
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEE 95 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHH
Confidence 3889999999999 9999999999999995 9999999874 3333333322223478899999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||.... ..++.+.+.++|++.+++|+.|++.++++++|.|+++ +++||++||..+..
T Consensus 96 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~---~g~iv~isS~~~~~------ 166 (285)
T 2p91_A 96 NWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR---NGAIVTLSYYGAEK------ 166 (285)
T ss_dssp HTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS---CCEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc---CCEEEEEccchhcc------
Confidence 99999999999998643 1345577899999999999999999999999999764 38999999988763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.++ ++.||+||+|+||+|+|++... .
T Consensus 167 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~ 215 (285)
T 2p91_A 167 -----------------------------VVPHYNVMGIAKAALESTVRYLAYDI-AKHGHRINAISAGPVKTLAAYS-I 215 (285)
T ss_dssp -----------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCSCC---C
T ss_pred -----------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCcccCchhhc-c
Confidence 44567789999999999999999999 7889999999999999986432 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHH
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEI 350 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~ 350 (358)
..............+..++.+|+|+|+.+++|+++.+..++|+++.+|+... .......+.+.++++|+.
T Consensus 216 ~~~~~~~~~~~~~~p~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgg~~----~~~~~~~~~~~~~~lw~~ 285 (285)
T 2p91_A 216 TGFHLLMEHTTKVNPFGKPITIEDVGDTAVFLCSDWARAITGEVVHVDNGYH----IMGVFGREEEIKKEVYGD 285 (285)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTGG----GBSCC-------------
T ss_pred cchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCCCCEEEECCCcc----cccccCChHHHHHHhcCC
Confidence 1111111112223345667899999999999999887789999999998742 234556788889999974
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=298.66 Aligned_cols=247 Identities=20% Similarity=0.163 Sum_probs=200.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++.+|+++.++++++++++.+.
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEI---GDAALAVAADISKEADVDAAVEAALSK 80 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHh---CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999995 9999999998888777766 357899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC--CCCeEEEEecCCCCCCCcCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~--~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|.+++. ..++||++||..+..
T Consensus 81 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-------- 152 (261)
T 3n74_A 81 FGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR-------- 152 (261)
T ss_dssp HSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS--------
T ss_pred cCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC--------
Confidence 9999999999998764456667789999999999999999999999999986521 137899999998874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+++|++.......
T Consensus 153 ---------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 204 (261)
T 3n74_A 153 ---------------------------PRPNLAWYNATKGWVVSVTKALAIEL-APAKIRVVALNPVAGETPLLTTFMGE 204 (261)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-------------
T ss_pred ---------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccChhhhhhccc
Confidence 55678889999999999999999999 77899999999999999865432211
Q ss_pred hhhh-hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ........+.+++.+|+|+|++++||+++.+..++|+.|.+||+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~ 254 (261)
T 3n74_A 205 DSEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGVALDVDGGR 254 (261)
T ss_dssp ------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred CcHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCCcccCcCCcEEEecCCc
Confidence 1111 122233445667899999999999999988888999999999975
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-40 Score=308.35 Aligned_cols=247 Identities=20% Similarity=0.223 Sum_probs=207.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------------hHHHHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
.+++||++|||||++|||+++++.|+++|+ +|++++|+ .+.++...+.+...+.++.++++|+++.+
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~ 120 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLA 120 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHH
Confidence 468999999999999999999999999995 99988876 56666666667666788999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+++++++++.+.++++|+||||||+... ..+.+.+.++|++.+++|+.|++.++++++|.|++++. +|+||++||..+
T Consensus 121 ~v~~~~~~~~~~~g~iD~lVnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~-~g~Iv~isS~~~ 198 (317)
T 3oec_A 121 SLQAVVDEALAEFGHIDILVSNVGISNQ-GEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQ-GGSVIFVSSTVG 198 (317)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCS-CEEEEEECCGGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-CCEEEEECcHHh
Confidence 9999999999999999999999998755 35678899999999999999999999999999987642 489999999988
Q ss_pred CCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 189 NTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
.. +.++...|+.||+|++.|+++++.|+ .+.||+||+|+||+|+
T Consensus 199 ~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~ 242 (317)
T 3oec_A 199 LR-----------------------------------GAPGQSHYAASKHGVQGLMLSLANEV-GRHNIRVNSVNPGAVN 242 (317)
T ss_dssp SS-----------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBS
T ss_pred cC-----------------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccc
Confidence 74 55678899999999999999999999 7789999999999999
Q ss_pred CCcccccchh--hhh-----------hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 269 TTGLFREHIP--LFR-----------LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 269 t~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|++....... +.. .........+ .++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 243 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~pedvA~av~fL~s~~a~~itG~~i~vdGG~ 313 (317)
T 3oec_A 243 TEMALNEKLLKMFLPHLENPTREDAAELFSQLTLLP-IPWVEPEDVSNAVAWLASDEARYIHGAAIPVDGGQ 313 (317)
T ss_dssp SHHHHCHHHHHHHCTTCSSCCHHHHHHHHTTTCSSS-SSSBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred CccccchhhhhhhhhhccccchhHHHHHHhhhccCC-CCCCCHHHHHHHHHHHcCCcccCCCCCEEEECcch
Confidence 9865321100 000 0000111112 45779999999999999998888999999999974
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=299.71 Aligned_cols=246 Identities=20% Similarity=0.236 Sum_probs=206.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh-cCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~-~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ ...+.++.++.+|+++.++++++++++.+
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 95 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 95 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999988777766665 33356788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC-CCCCCcCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT-GNTNTLAGNVP 198 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~-~~~~~~~~~~~ 198 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .++||++||.. +..
T Consensus 96 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-------- 164 (267)
T 1vl8_A 96 KFGKLDTVVNAAGINRR-HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEEV-------- 164 (267)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTCC--------
T ss_pred HcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCcchhcc--------
Confidence 99999999999998754 3566789999999999999999999999999998765 48999999988 653
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.......
T Consensus 165 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~ 216 (267)
T 1vl8_A 165 ---------------------------TMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFSD 216 (267)
T ss_dssp ---------------------------CSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHHTC
T ss_pred ---------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCccccccccccC
Confidence 44567899999999999999999999 77899999999999999864321100
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+..++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 217 -~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 264 (267)
T 1vl8_A 217 -PEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 264 (267)
T ss_dssp -HHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred -hHHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCcCCeEEECCCC
Confidence 001111112234567889999999999999988888999999999863
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=304.16 Aligned_cols=245 Identities=15% Similarity=0.075 Sum_probs=201.1
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+++||++|||||+ +|||++++++|+++|+ +|++++|+....+... ++.....++.++++|+++.++++++++++.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 104 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVE-PLAEELGAFVAGHCDVADAASIDAVFETLE 104 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHH-HHHHHHTCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHH-HHHHhcCCceEEECCCCCHHHHHHHHHHHH
Confidence 46999999999999 5599999999999995 8999999964433332 222222468899999999999999999999
Q ss_pred hcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 119 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
+.++++|+||||||.... ...+.+.+.++|++.+++|+.+++.++++++|+|++ +|+||++||..+..
T Consensus 105 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~----~g~Iv~isS~~~~~----- 175 (293)
T 3grk_A 105 KKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD----GGSILTLTYYGAEK----- 175 (293)
T ss_dssp HHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT----CEEEEEEECGGGTS-----
T ss_pred HhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC----CCEEEEEeehhhcc-----
Confidence 999999999999998742 235667899999999999999999999999999976 37999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.+++..|+.||+|++.|+++++.|+ .+.||+||+|+||+|+|++...
T Consensus 176 ------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~- 223 (293)
T 3grk_A 176 ------------------------------VMPNYNVMGVAKAALEASVKYLAVDL-GPQNIRVNAISAGPIKTLAASG- 223 (293)
T ss_dssp ------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC------
T ss_pred ------------------------------CCCchHHHHHHHHHHHHHHHHHHHHH-hHhCCEEEEEecCCCcchhhhc-
Confidence 45678899999999999999999999 7789999999999999986433
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
...............+.+++.+|+|+|++++||+++.+.++||++|.+||+..
T Consensus 224 ~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 276 (293)
T 3grk_A 224 IGDFRYILKWNEYNAPLRRTVTIDEVGDVGLYFLSDLSRSVTGEVHHADSGYH 276 (293)
T ss_dssp -CCHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCcceEEEECCCcc
Confidence 21111222223345566778999999999999999988889999999999864
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=301.40 Aligned_cols=246 Identities=20% Similarity=0.187 Sum_probs=207.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDF 82 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 99999999888888777776666789999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||......++.+.+.++|++.+++|+.+++.++++++|+|.+++ .++||++||..+..
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 149 (262)
T 1zem_A 83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVK----------- 149 (262)
T ss_dssp SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHS-----------
T ss_pred CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc-----------
Confidence 99999999999862334566789999999999999999999999999998764 38999999988764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----- 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~----- 276 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.....
T Consensus 150 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~ 204 (262)
T 1zem_A 150 ------------------------GPPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQA 204 (262)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHH
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEecCCcCcchhhhhccchhh
Confidence 44567899999999999999999999 778999999999999998643210
Q ss_pred ------hh-hhh-hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 277 ------IP-LFR-LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ------~~-~~~-~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. ... .........+.+++.+|+|+|+.++||+++.+.+++|+.+..||+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG 262 (262)
T 1zem_A 205 KVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 262 (262)
T ss_dssp HHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred hccccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCcCCcEEecCCC
Confidence 00 000 001111234556788999999999999998888899999999873
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=297.09 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=200.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
||++|||||++|||++++++|+++|+ ..|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.+++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY---GDRFFYVVGDITEDSVLKQLVNAAVKGHGK 78 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH---GGGEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh---CCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999863 58999999988887777665 357899999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|++++ |+||++||..+..
T Consensus 79 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~---g~iv~isS~~~~~------------- 142 (254)
T 3kzv_A 79 IDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN---GNVVFVSSDACNM------------- 142 (254)
T ss_dssp CCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCSCCCC-------------
T ss_pred ccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC---CeEEEEcCchhcc-------------
Confidence 999999999875545677889999999999999999999999999998764 7999999998874
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh----
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---- 279 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~---- 279 (358)
+.++...|+.||++++.|++.++.|+ +||+||+|+||+++|++........
T Consensus 143 ----------------------~~~~~~~Y~asK~a~~~~~~~la~e~---~~i~vn~v~PG~v~t~~~~~~~~~~~~~~ 197 (254)
T 3kzv_A 143 ----------------------YFSSWGAYGSSKAALNHFAMTLANEE---RQVKAIAVAPGIVDTDMQVNIRENVGPSS 197 (254)
T ss_dssp ----------------------SSCCSHHHHHHHHHHHHHHHHHHHHC---TTSEEEEEECSSCCCCCSCCCCCCCCTTT
T ss_pred ----------------------CCCCcchHHHHHHHHHHHHHHHHhhc---cCcEEEEEeCCcccchhHHHhhcccCccc
Confidence 55678899999999999999999997 6899999999999999764321110
Q ss_pred --hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC-CCCCceeeecCCCC
Q 018331 280 --FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKDS 327 (358)
Q Consensus 280 --~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.. .+++|++|.+|+..
T Consensus 198 ~~~~~~~~~~~~~~~~r~~~p~dva~~v~~L~s~~~~~~itG~~i~vdg~~ 248 (254)
T 3kzv_A 198 MSAEQLKMFRGLKENNQLLDSSVPATVYAKLALHGIPDGVNGQYLSYNDPA 248 (254)
T ss_dssp SCHHHHHHHHHHHTTC----CHHHHHHHHHHHHHCCCGGGTTCEEETTCGG
T ss_pred cCHHHHHHHHHHHhcCCcCCcccHHHHHHHHHhhcccCCCCccEEEecCcc
Confidence 1111122334556778999999999999999984 78999999999965
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=301.67 Aligned_cols=248 Identities=21% Similarity=0.184 Sum_probs=206.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... +.++.++.+|+++.++++++++++.
T Consensus 9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 87 (267)
T 1iy8_A 9 TRFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATT 87 (267)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 368999999999999999999999999995 9999999988777776666443 5678999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||......++.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 157 (267)
T 1iy8_A 88 ERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIR-------- 157 (267)
T ss_dssp HHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS--------
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEEcchhhcc--------
Confidence 99999999999999874423566788999999999999999999999999998764 38999999998774
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc--c
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE--H 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~--~ 276 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.... .
T Consensus 158 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 209 (267)
T 1iy8_A 158 ---------------------------GIGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQ 209 (267)
T ss_dssp ---------------------------BCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHH
T ss_pred ---------------------------CCCCCccHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEeCCCcCcchhccccc
Confidence 44667899999999999999999999 77899999999999999864321 0
Q ss_pred -hhh-hhhhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 -IPL-FRLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 -~~~-~~~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.+. ..... ......+.+++.+|+|+|+.++||+++++.+++|+.+.+||+.
T Consensus 210 ~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 263 (267)
T 1iy8_A 210 LDPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQ 263 (267)
T ss_dssp HCTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred cChhhhhhHHHHHhccCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 000 00000 1111234567889999999999999988888999999999874
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=304.80 Aligned_cols=248 Identities=11% Similarity=0.042 Sum_probs=206.6
Q ss_pred CcccCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
..+++++|++|||||+| |||++++++|+++|+ +|++++|+.+..+...+..... .++.++++|+++.+++++++++
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~ 101 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESL-GVKLTVPCDVSDAESVDNMFKV 101 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHH-TCCEEEECCTTCHHHHHHHHHH
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhc-CCeEEEEcCCCCHHHHHHHHHH
Confidence 34578999999999997 999999999999995 9999999975544443333222 3468999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 117 FRRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
+.+.++++|+||||||+... ...+.+.+.++|++.+++|+.+++.++++++|+|++ +|+||++||..+..
T Consensus 102 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~----~g~IV~isS~~~~~--- 174 (296)
T 3k31_A 102 LAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN----GGSILTLSYYGAEK--- 174 (296)
T ss_dssp HHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTS---
T ss_pred HHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCEEEEEEehhhcc---
Confidence 99999999999999998743 135567899999999999999999999999999876 37999999998874
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.+++..|+.||+|++.|+++++.|+ ++.||+||+|+||+|+|++..
T Consensus 175 --------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~ 221 (296)
T 3k31_A 175 --------------------------------VVPHYNVMGVCKAALEASVKYLAVDL-GKQQIRVNAISAGPVRTLASS 221 (296)
T ss_dssp --------------------------------CCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCCCCSSCC
T ss_pred --------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEECCCcCchhh
Confidence 55678899999999999999999999 788999999999999998653
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
. ...............+.+++.+|+|+|++++||+++.+.++||+.|.+||+...
T Consensus 222 ~-~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~a~~itG~~i~vdGG~~~ 276 (296)
T 3k31_A 222 G-ISDFHYILTWNKYNSPLRRNTTLDDVGGAALYLLSDLGRGTTGETVHVDCGYHV 276 (296)
T ss_dssp S-CHHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred c-ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCccCCccCCEEEECCCccc
Confidence 3 222112222233445667889999999999999999888899999999998643
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=297.22 Aligned_cols=239 Identities=15% Similarity=0.097 Sum_probs=192.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~- 81 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH- 81 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-
Confidence 57899999999999999999999999995 9999999998888888888777788999999999999999999999998
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 82 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 147 (252)
T 3h7a_A 82 APLEVTIFNVGANVN-FPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG--QGKIFFTGATASLR----------- 147 (252)
T ss_dssp SCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTC-----------
T ss_pred CCceEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHHcC-----------
Confidence 999999999998764 4666889999999999999999999999999998765 48999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEE-EEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAF-ASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v-~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+| |+|+||+|+|++.........
T Consensus 148 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~n~v~PG~v~T~~~~~~~~~~~ 202 (252)
T 3h7a_A 148 ------------------------GGSGFAAFASAKFGLRAVAQSMAREL-MPKNIHVAHLIIDSGVDTAWVRERREQMF 202 (252)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC----------------
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCCccCChhhhccchhhh
Confidence 55778899999999999999999999 7789999 999999999986644321111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.......+.+ +.+|+|+|+.++||++++....+|+......
T Consensus 203 ---~~~~~~~~~~-~~~pedvA~~~~~l~s~~~~~~~~~i~~~~~ 243 (252)
T 3h7a_A 203 ---GKDALANPDL-LMPPAAVAGAYWQLYQQPKSAWTFEMEIRPY 243 (252)
T ss_dssp ---------------CCHHHHHHHHHHHHHCCGGGBCSEEEEBCC
T ss_pred ---hhhhhcCCcc-CCCHHHHHHHHHHHHhCchhcceeeEEeeec
Confidence 1111222333 7899999999999999888778888766554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=308.65 Aligned_cols=247 Identities=21% Similarity=0.263 Sum_probs=208.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCC--cEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga--~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.+++||++|||||++|||++++++|+++|+ ..|++++|+.+.++...+++... +.++.++++|+++.+++++++++
T Consensus 29 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~ 108 (287)
T 3rku_A 29 ERLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIEN 108 (287)
T ss_dssp HHHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHT
T ss_pred hhcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999999999999984 29999999998888887777543 56789999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 109 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~------ 180 (287)
T 3rku_A 109 LPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN--SGDIVNLGSIAGRD------ 180 (287)
T ss_dssp SCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS------
T ss_pred HHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCeEEEECChhhcC------
Confidence 9999999999999999876445677889999999999999999999999999998765 48999999998874
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++.....
T Consensus 181 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~ 230 (287)
T 3rku_A 181 -----------------------------AYPTGSIYCASKFAVGAFTDSLRKEL-INTKIRVILIAPGLVETEFSLVRY 230 (287)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEESCEESSHHHHHT
T ss_pred -----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEeCCcCcCccccccc
Confidence 55678899999999999999999999 888999999999999998642211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
..... ...........++|+|+|++++||+++++..++|+.+..++.+.
T Consensus 231 ~~~~~---~~~~~~~~~~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g~~ 279 (287)
T 3rku_A 231 RGNEE---QAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQA 279 (287)
T ss_dssp TTCHH---HHHHHHTTSCCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETTEE
T ss_pred cCcHH---HHHHhhcccCCCCHHHHHHHHHHHhCCCCCeEecceEEeeCCCC
Confidence 11000 01111112234589999999999999998889999999888753
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-40 Score=297.36 Aligned_cols=243 Identities=19% Similarity=0.148 Sum_probs=182.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE 83 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999998888888888777788999999999999999999999999
Q ss_pred CCCccEEEEcccccC--CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 121 GRPLDVLVCNAAVYL--PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~--~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++++|+||||||... ....+.+.+.+.|++.+++|+.+++.++++++|.|.+++ .++||++||..++
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~--------- 152 (253)
T 3qiv_A 84 FGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG--GGAIVNQSSTAAW--------- 152 (253)
T ss_dssp HSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECC-------------
T ss_pred cCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CCEEEEECCcccc---------
Confidence 999999999999842 223456789999999999999999999999999998765 4899999998875
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
.+...|+.||++++.|++.++.|+ .+.||+|++|+||++.|++.......
T Consensus 153 -----------------------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~ 202 (253)
T 3qiv_A 153 -----------------------------LYSNYYGLAKVGINGLTQQLSREL-GGRNIRINAIAPGPIDTEANRTTTPK 202 (253)
T ss_dssp ------------------------------------CCHHHHHHHHHHHHHHT-TTTTEEEEEEEC--------------
T ss_pred -----------------------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecCCcccchhhcCcH
Confidence 245679999999999999999999 77899999999999999865432211
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+|+|+++++|+++....++|+.+.+|++.
T Consensus 203 --~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 249 (253)
T 3qiv_A 203 --EMVDDIVKGLPLSRMGTPDDLVGMCLFLLSDEASWITGQIFNVDGGQ 249 (253)
T ss_dssp -------------------CCHHHHHHHHHHSGGGTTCCSCEEEC----
T ss_pred --HHHHHHhccCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCe
Confidence 11222333445566789999999999999988888999999999864
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=298.59 Aligned_cols=246 Identities=19% Similarity=0.194 Sum_probs=206.1
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+ ++.++.+|+++.++++++++++.+
T Consensus 24 ~~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~ 101 (276)
T 2b4q_A 24 YFSLAGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG-DCQAIPADLSSEAGARRLAQALGE 101 (276)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS-CEEECCCCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-ceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3568999999999999999999999999995 99999999888887777776544 788999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC--CCCeEEEEecCCCCCCCcCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY--PSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~--~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++. ..++||++||..+..
T Consensus 102 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~------- 173 (276)
T 2b4q_A 102 LSARLDILVNNAGTSWG-AALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS------- 173 (276)
T ss_dssp HCSCCSEEEECCCCCCC-CCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC-------
T ss_pred hcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC-------
Confidence 99999999999998754 45667889999999999999999999999999986541 127999999998763
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhh-hhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++.. .|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.....
T Consensus 174 ----------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~ 224 (276)
T 2b4q_A 174 ----------------------------AMGEQAYAYGPSKAALHQLSRMLAKEL-VGEHINVNVIAPGRFPSRMTRHIA 224 (276)
T ss_dssp ----------------------------CCCCSCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSTTTHHHH
T ss_pred ----------------------------CCCCCccccHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCcCcchhhcc
Confidence 334455 89999999999999999999 778999999999999998643211
Q ss_pred hhhhhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ..... ..+.+++.+|+|+|+.++||+++++.+++|+.+.+||+.
T Consensus 225 ~~~~---~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 274 (276)
T 2b4q_A 225 NDPQ---ALEADSASIPMGRWGRPEEMAALAISLAGTAGAYMTGNVIPIDGGF 274 (276)
T ss_dssp HCHH---HHHHHHHTSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred hhHH---HHHHhhcCCCCCCcCCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 1100 01111 234567889999999999999988878999999999863
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=295.43 Aligned_cols=247 Identities=18% Similarity=0.176 Sum_probs=207.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANH 83 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999988887777777655668899999999999999999999999
Q ss_pred C-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+ +++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 84 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 151 (260)
T 2ae2_A 84 FHGKLNILVNNAGIVIY-KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGAL--------- 151 (260)
T ss_dssp TTTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTS---------
T ss_pred cCCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcc---------
Confidence 8 899999999998744 3556788999999999999999999999999998765 38999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~ 278 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++...... +
T Consensus 152 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 204 (260)
T 2ae2_A 152 --------------------------AVPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQDP 204 (260)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTSH
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCCCCCcchhhhccCh
Confidence 44667899999999999999999999 7789999999999999985432110 1
Q ss_pred -hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....+.......+..++.+|+|+|+.+++|+++.+..++|+.+..||+.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (260)
T 2ae2_A 205 EQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGL 254 (260)
T ss_dssp HHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 0110001122334567889999999999999988778999999999874
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=302.83 Aligned_cols=255 Identities=19% Similarity=0.193 Sum_probs=205.1
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------------hHHHHHHHHHhcCCCCceEEEEecCCC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD------------FLKAERAAKSAGMAKENYTIMHLDLAS 106 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------------~~~~~~~~~~~~~~~~~i~~~~~Dl~~ 106 (358)
.+.+++||++|||||++|||++++++|+++|+ +|++++|+ ...++....++...+.++.++++|+++
T Consensus 4 ~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 82 (287)
T 3pxx_A 4 SMGRVQDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRD 82 (287)
T ss_dssp SCCTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTC
T ss_pred cccccCCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 34579999999999999999999999999995 99999987 666666666666667889999999999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.++++++++++.+.++++|+||||||..... .+.+.++|++.+++|+.|++.++++++|+|.+ .++||++||.
T Consensus 83 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~---~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~ 155 (287)
T 3pxx_A 83 RAAVSRELANAVAEFGKLDVVVANAGICPLG---AHLPVQAFADAFDVDFVGVINTVHAALPYLTS----GASIITTGSV 155 (287)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCC---TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCT----TCEEEEECCH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCccc---CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhc----CcEEEEeccc
Confidence 9999999999999999999999999987543 24788999999999999999999999999943 3799999998
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
.+..+.... +..+..+.++...|+.||++++.|++.++.|+ ++.||+||+|+||+
T Consensus 156 ~~~~~~~~~------------------------~~~~~~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~ 210 (287)
T 3pxx_A 156 AGLIAAAQP------------------------PGAGGPQGPGGAGYSYAKQLVDSYTLQLAAQL-APQSIRANVIHPTN 210 (287)
T ss_dssp HHHHHHHCC------------------------C-----CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESS
T ss_pred hhccccccc------------------------ccccccCCCccchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCc
Confidence 876421100 00111234678899999999999999999999 77899999999999
Q ss_pred ccCCcccccchh--hhhh---------h--cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 267 IATTGLFREHIP--LFRL---------L--FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 267 v~t~~~~~~~~~--~~~~---------~--~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
|+|++....... +... . .......+ +++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 211 v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~dva~~v~fL~s~~a~~itG~~i~vdGG~ 283 (287)
T 3pxx_A 211 VNTDMLNSAPMYRQFRPDLEAPSRADALLAFPAMQAMP-TPYVEASDISNAVCFLASDESRYVTGLQFKVDAGA 283 (287)
T ss_dssp BSSTTTSSHHHHHHHCTTSSSCCHHHHHHHGGGGCSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccccccccchhhhhccccccchhHHHHhhhhhhcccC-CCCCCHHHHHhhHheecchhhcCCCCceEeECchh
Confidence 999976431100 0000 0 00111222 56889999999999999998889999999999974
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=297.32 Aligned_cols=246 Identities=19% Similarity=0.235 Sum_probs=205.9
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
...++++|++|||||++|||++++++|+++|+ +|++++ |+....+...+.+...+.++.++++|+++.++++++++++
T Consensus 7 ~~~~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 85 (256)
T 3ezl_A 7 HHMVMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKV 85 (256)
T ss_dssp ------CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHH
Confidence 34568899999999999999999999999995 888777 6665666666666656678999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 86 ~~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------- 155 (256)
T 3ezl_A 86 KAEVGEIDVLVNNAGITRD-VVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG--WGRIINISSVNGQK------- 155 (256)
T ss_dssp HHHTCCEEEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCGGG-------
T ss_pred HHhcCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEcchhhcc-------
Confidence 9999999999999998754 4567889999999999999999999999999998875 38999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++.|++.+++|+ .+.||+|++|+||+++|++......
T Consensus 156 ----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 206 (256)
T 3ezl_A 156 ----------------------------GQFGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAIRP 206 (256)
T ss_dssp ----------------------------SCSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCH
T ss_pred ----------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEEECcccCccccccCH
Confidence 45678899999999999999999999 7789999999999999986533221
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. .........+..++.+|+|+|+.++||+++.+..++|+.+.+||+.
T Consensus 207 ~---~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (256)
T 3ezl_A 207 D---VLEKIVATIPVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGGL 253 (256)
T ss_dssp H---HHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred H---HHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCCE
Confidence 1 1122333445667889999999999999988888999999999874
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=299.08 Aligned_cols=245 Identities=16% Similarity=0.112 Sum_probs=201.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+.+ +.++.++++|+++.++++++++++.+.
T Consensus 1 M~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 76 (281)
T 3zv4_A 1 MKLTGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAH---GGNAVGVVGDVRSLQDQKRAAERCLAA 76 (281)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHT---BTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCcCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHc---CCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 358899999999999999999999999995 9999999988877766654 467899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCC----CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKE----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~----~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
++++|+||||||+......+ .+.+.+.|++.+++|+.+++.++++++|+|.+++ |+||++||..+..
T Consensus 77 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~------ 147 (281)
T 3zv4_A 77 FGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR---GSVVFTISNAGFY------ 147 (281)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTS------
T ss_pred cCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC---CeEEEEecchhcc------
Confidence 99999999999986433222 2345678999999999999999999999998753 7999999998874
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||+|+++|+++++.|+ ++. |+||+|+||+|+|++.....
T Consensus 148 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~-Irvn~v~PG~v~T~~~~~~~ 196 (281)
T 3zv4_A 148 -----------------------------PNGGGPLYTATKHAVVGLVRQMAFEL-APH-VRVNGVAPGGMNTDLRGPSS 196 (281)
T ss_dssp -----------------------------SSSSCHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSSCC--CCCTT
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-cCC-CEEEEEECCcCcCCcccccc
Confidence 55677899999999999999999999 655 99999999999998653321
Q ss_pred hhhh-------hhhcchhHHhhhcCccchhHHhhhhhhhhc-CCCCCCCceeeecCCCCcc
Q 018331 277 IPLF-------RLLFPPFQKYITKGYVSEDEAGKRLAQVVS-DPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 277 ~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~-~~~~~~~G~~~~~d~~~~~ 329 (358)
.... ..........+.+++.+|+|+|.+++||++ +.+.++||+.+.+||+...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~~~~~itG~~i~vdGG~~~ 257 (281)
T 3zv4_A 197 LGLSEQSISSVPLADMLKSVLPIGRMPALEEYTGAYVFFATRGDSLPATGALLNYDGGMGV 257 (281)
T ss_dssp CC--------CCHHHHHHHTCTTSSCCCGGGGSHHHHHHHSTTTSTTCSSCEEEESSSGGG
T ss_pred cccccccccchhHHHHHHhcCCCCCCCCHHHHHHHHHHhhcccccccccCcEEEECCCCcc
Confidence 1000 011112234466788999999999999999 6666699999999998643
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=300.96 Aligned_cols=244 Identities=15% Similarity=0.114 Sum_probs=203.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhc-CCCCceEEEEecCCCHH----------
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD---------- 108 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~-~~~~~i~~~~~Dl~~~~---------- 108 (358)
+++++|++|||||++|||++++++|+++|+ +|++++ |+.+.++...+++. ..+.++.++++|+++.+
T Consensus 5 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 83 (291)
T 1e7w_A 5 TAPTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGS 83 (291)
T ss_dssp ---CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----C
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCcccccccccccc
Confidence 468899999999999999999999999995 999999 99888877777765 44568999999999999
Q ss_pred -------HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCC--------------HHhHHhhhhhhhhHHHHHHHHHH
Q 018331 109 -------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLL 167 (358)
Q Consensus 109 -------~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~--------------~~~~~~~~~vN~~~~~~l~~~~~ 167 (358)
+++++++++.+.++++|+||||||.... ..+.+.+ .++|++++++|+.+++.++++++
T Consensus 84 ~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~ 162 (291)
T 1e7w_A 84 APVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP-TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFA 162 (291)
T ss_dssp CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCC-CChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999999999999998754 3556777 89999999999999999999999
Q ss_pred HHHhcCCC----CCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHH
Q 018331 168 DDLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT 243 (358)
Q Consensus 168 ~~l~~~~~----~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~ 243 (358)
|+|++++. ..++||++||..+.. +.++...|+.||+++..|
T Consensus 163 ~~m~~~~~~~~~~~g~Iv~isS~~~~~-----------------------------------~~~~~~~Y~asKaa~~~l 207 (291)
T 1e7w_A 163 HRVAGTPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGL 207 (291)
T ss_dssp HHHHTSCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCCCcEEEEEechhhcC-----------------------------------CCCCCchhHHHHHHHHHH
Confidence 99987641 038999999998874 556788999999999999
Q ss_pred HHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhc-CccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 244 MQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 244 ~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
++.++.|+ .+.||+||+|+||+++|++ + ..+ ..........+.. ++.+|+|+|+.++||+++.+.+++|+++.
T Consensus 208 ~~~la~e~-~~~gI~vn~v~PG~v~T~~--~-~~~--~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~ 281 (291)
T 1e7w_A 208 TRSAALEL-APLQIRVNGVGPGLSVLVD--D-MPP--AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVK 281 (291)
T ss_dssp HHHHHHHH-GGGTEEEEEEEESSBCCGG--G-SCH--HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred HHHHHHHH-HhcCeEEEEEeeCCccCCc--c-CCH--HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCCcccCccCcEEE
Confidence 99999999 7789999999999999986 2 211 1111111223444 67899999999999999888889999999
Q ss_pred cCCCC
Q 018331 323 WNKDS 327 (358)
Q Consensus 323 ~d~~~ 327 (358)
+||..
T Consensus 282 vdGG~ 286 (291)
T 1e7w_A 282 VDGGY 286 (291)
T ss_dssp ESTTG
T ss_pred ECCCc
Confidence 99874
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=301.68 Aligned_cols=233 Identities=21% Similarity=0.245 Sum_probs=197.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-------HHHHHHHhcCCCCceEEEEecCCCHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-------~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
++++||++|||||++|||++++++|+++|+ +|++++|+... ++...+.+...+.++.++++|+++.++++++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 80 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAA 80 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 478999999999999999999999999995 99999998643 4555555655577899999999999999999
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
++++.+.++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 81 ~~~~~~~~g~iD~lvnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--- 154 (274)
T 3e03_A 81 VAATVDTFGGIDILVNNASAIWL-RGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAP--NPHILTLAPPPSLN--- 154 (274)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC-CCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSS--SCEEEECCCCCCCC---
T ss_pred HHHHHHHcCCCCEEEECCCcccC-CCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcC--CceEEEECChHhcC---
Confidence 99999999999999999998754 3566789999999999999999999999999998875 48999999998773
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCC--CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC-cccCC
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD--FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATT 270 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG-~v~t~ 270 (358)
+ .++...|+.||+|+++|++.++.|+ .+.||+||+|+|| +++|+
T Consensus 155 --------------------------------~~~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~~v~T~ 201 (274)
T 3e03_A 155 --------------------------------PAWWGAHTGYTLAKMGMSLVTLGLAAEF-GPQGVAINALWPRTVIATD 201 (274)
T ss_dssp --------------------------------HHHHHHCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECSBCBCC-
T ss_pred --------------------------------CCCCCCCchHHHHHHHHHHHHHHHHHHh-hhcCEEEEEEECCcccccc
Confidence 2 4567889999999999999999999 7889999999999 68887
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
+. .... ..+..++.+|+|+|+.++||+++.+..+||+++..+|
T Consensus 202 ~~-~~~~-----------~~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~~~g 244 (274)
T 3e03_A 202 AI-NMLP-----------GVDAAACRRPEIMADAAHAVLTREAAGFHGQFLIDDE 244 (274)
T ss_dssp ------------------CCCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEEHHH
T ss_pred hh-hhcc-----------cccccccCCHHHHHHHHHHHhCccccccCCeEEEcCc
Confidence 55 1110 0112246799999999999999998899999996555
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=294.64 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=208.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (260)
T 2zat_A 10 KPLENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNL 88 (260)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 9999999988877777777655678899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..++.
T Consensus 89 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 156 (260)
T 2zat_A 89 HGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRG--GGSVLIVSSVGAYH---------- 156 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEEechhhcC----------
Confidence 999999999999864334556788999999999999999999999999998765 48999999998873
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++....... .
T Consensus 157 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~-~ 209 (260)
T 2zat_A 157 -------------------------PFPNLGPYNVSKTALLGLTKNLAVEL-APRNIRVNCLAPGLIKTNFSQVLWMD-K 209 (260)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSTTHHHHSS-H
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcccCccchhcccC-h
Confidence 45677899999999999999999999 77899999999999999864321100 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|+.++||+++++.+++|+.+..||+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 256 (260)
T 2zat_A 210 ARKEYMKESLRIRRLGNPEDCAGIVSFLCSEDASYITGETVVVGGGT 256 (260)
T ss_dssp HHHHHHHHHHTCSSCBCGGGGHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHHHHHhcCCCCCCCCHHHHHHHHHHHcCcccCCccCCEEEECCCc
Confidence 00011112334567889999999999999988878999999999864
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=294.71 Aligned_cols=243 Identities=19% Similarity=0.208 Sum_probs=205.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||++|||++++++|+++|+ +|++++| +.+.++...+++...+.++.++++|+++.++++++++++.+.
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (246)
T 2uvd_A 1 MLKGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDV 79 (246)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 36799999999999999999999999995 9999988 777777777777655678899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 80 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 146 (246)
T 2uvd_A 80 FGQVDILVNNAGVTKD-NLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR--HGRIVNIASVVGVT---------- 146 (246)
T ss_dssp HSCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH----------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCHHhcC----------
Confidence 9999999999998744 3566789999999999999999999999999998764 38999999998763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... ....
T Consensus 147 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~- 198 (246)
T 2uvd_A 147 -------------------------GNPGQANYVAAKAGVIGLTKTSAKEL-ASRNITVNAIAPGFIATDMTDV-LDEN- 198 (246)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCSSC-CCTT-
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeccccCcchhh-cCHH-
Confidence 34567899999999999999999999 7789999999999999986533 1110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+|+.+++|+++++.+++|+.+.+||+.
T Consensus 199 -~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 244 (246)
T 2uvd_A 199 -IKAEMLKLIPAAQFGEAQDIANAVTFFASDQSKYITGQTLNVDGGM 244 (246)
T ss_dssp -HHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECcCc
Confidence 0011112234467889999999999999988778999999999863
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=295.79 Aligned_cols=245 Identities=22% Similarity=0.212 Sum_probs=201.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-HHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++|++|||||++|||++++++|+++|+ +|++++|+.+. ++...+++... +.++.++.+|+++.++++++++++.+.
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 80 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 6789999999999999999999999995 99999998776 67666666443 567899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 81 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 147 (260)
T 1x1t_A 81 MGRIDILVNNAGIQHT-ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLV---------- 147 (260)
T ss_dssp HSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECcHHhCc----------
Confidence 9999999999998644 3566789999999999999999999999999998764 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 201 (260)
T 1x1t_A 148 -------------------------ASANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-ccCCEEEEEEeecCccCchHHHhhhhhc
Confidence 44667899999999999999999999 778999999999999998654321100
Q ss_pred -------hhhhcch-hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -------FRLLFPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -------~~~~~~~-~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....... ....+.+++.+|+|+|+.++||+++.+..++|+.+.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 257 (260)
T 1x1t_A 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccCCchHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhChhhcCCCCCEEEECCCc
Confidence 0011111 22345567889999999999999988778999999999863
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=294.59 Aligned_cols=247 Identities=20% Similarity=0.220 Sum_probs=206.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.++++...+++... +.++.++++|+++.++++++++++.+
T Consensus 3 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (263)
T 3ai3_A 3 MGISGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRS 81 (263)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999999995 9999999988777776666443 56789999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 82 ~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 149 (263)
T 3ai3_A 82 SFGGADILVNNAGTGSN-ETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG--GGAIIHNASICAVQ--------- 149 (263)
T ss_dssp HHSSCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhcC---------
Confidence 99999999999998754 4566789999999999999999999999999998764 38999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||++.|++.......+
T Consensus 150 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (263)
T 3ai3_A 150 --------------------------PLWYEPIYNVTKAALMMFSKTLATEV-IKDNIRVNCINPGLILTPDWIKTAKEL 202 (263)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHHH
T ss_pred --------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhhhhHhh
Confidence 44567899999999999999999999 778999999999999998643211100
Q ss_pred -------hhhh-cchhHH-hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -------FRLL-FPPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -------~~~~-~~~~~~-~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ...... .+.+++.+|+|+|+++++|++++...++|+.+..||+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~vdgG~ 259 (263)
T 3ai3_A 203 TKDNGGDWKGYLQSVADEHAPIKRFASPEELANFFVFLCSERATYSVGSAYFVDGGM 259 (263)
T ss_dssp TTTTTCCHHHHHHHHHHHHCTTCSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTC
T ss_pred hcccCCcHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 0011 111112 34567899999999999999988778999999999864
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-39 Score=296.16 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=206.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++|++|||||++|||++++++|+++|+ +|++++ |+....+...+.+...+.++.++.+|+++.++++++++++.+.
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 100 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGM-AVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD 100 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 37899999999999999999999999995 888887 6666666666666666778999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 101 ~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 167 (269)
T 3gk3_A 101 FGKVDVLINNAGITRD-ATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERR--FGRIVNIGSVNGSR---------- 167 (269)
T ss_dssp HSCCSEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCcCCC-cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEeCChhhcc----------
Confidence 9999999999998754 3566889999999999999999999999999998765 38999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+++|++.+++++ .+.||+||+|+||+|+|++.........
T Consensus 168 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~ 221 (269)
T 3gk3_A 168 -------------------------GAFGQANYASAKAGIHGFTKTLALET-AKRGITVNTVSPGYLATAMVEAVPQDVL 221 (269)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTC------
T ss_pred -------------------------CCCCcchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchhhhhhchhHH
Confidence 45678899999999999999999999 7789999999999999986543221111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+.+++.+|+|+|+.+++|+++....++|+.+.+||+.
T Consensus 222 --~~~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG~ 266 (269)
T 3gk3_A 222 --EAKILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGGM 266 (269)
T ss_dssp ---CCSGGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTTS
T ss_pred --HHHhhhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCCE
Confidence 112333445567889999999999999998888999999999864
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=297.75 Aligned_cols=245 Identities=24% Similarity=0.208 Sum_probs=206.4
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+++++|++|||||++|||++++++|+++|+ +|++++| +.+..+...+.++..+.++.++++|+++.+++.++++++.
T Consensus 24 ~m~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 102 (271)
T 4iin_A 24 AMQFTGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIV 102 (271)
T ss_dssp CCCCSCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999999999995 8999998 4555666666666667789999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 103 ~~~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 171 (271)
T 4iin_A 103 QSDGGLSYLVNNAGVVRD-KLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR--FGSVVNVASIIGER-------- 171 (271)
T ss_dssp HHHSSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH--------
T ss_pred HhcCCCCEEEECCCcCCC-cccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEechhhcC--------
Confidence 999999999999998755 3556789999999999999999999999999998765 38999999998764
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||++++.|++.++.|+ .++||+||+|+||+++|++.......
T Consensus 172 ---------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~ 223 (271)
T 4iin_A 172 ---------------------------GNMGQTNYSASKGGMIAMSKSFAYEG-ALRNIRFNSVTPGFIETDMNANLKDE 223 (271)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCCC--------
T ss_pred ---------------------------CCCCchHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcccCCchhhhcHH
Confidence 55678899999999999999999999 77899999999999999865432111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+|+++++|+++++..++|+.+.+||+.
T Consensus 224 ---~~~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~~i~vdGG~ 269 (271)
T 4iin_A 224 ---LKADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGETLKVNGGL 269 (271)
T ss_dssp -------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred ---HHHHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCCEEEeCCCe
Confidence 1112223445567889999999999999998888999999999864
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-40 Score=301.81 Aligned_cols=243 Identities=19% Similarity=0.154 Sum_probs=195.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+. .+.++++|+++.++++++++++.+
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 107 (281)
T 4dry_A 29 GSGEGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRA 107 (281)
T ss_dssp -----CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 999999999888877777754433 458999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|.|+++...+|+||++||..+..
T Consensus 108 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~--------- 178 (281)
T 4dry_A 108 EFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQT--------- 178 (281)
T ss_dssp HHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCC---------
Confidence 99999999999998755456778899999999999999999999999999988642248999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+++|+++++.|+ ++.||+||+|+||+|+|++.......
T Consensus 179 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~- 230 (281)
T 4dry_A 179 --------------------------PRPNSAPYTATKHAITGLTKSTALDG-RMHDIACGQIDIGNAATDMTARMSTG- 230 (281)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEECBCC-------CE-
T ss_pred --------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcCcChhhhhhcch-
Confidence 55778899999999999999999999 77899999999999999865432111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWN 324 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d 324 (358)
........+..++.+|+|+|++++||++.+... .++..+...
T Consensus 231 ---~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~~i~~~~i~p~ 273 (281)
T 4dry_A 231 ---VLQANGEVAAEPTIPIEHIAEAVVYMASLPLSANVLTMTVMAT 273 (281)
T ss_dssp ---EECTTSCEEECCCBCHHHHHHHHHHHHHSCTTEEEEEEEEEET
T ss_pred ---hhhhhhcccccCCCCHHHHHHHHHHHhCCCccCccccEEEEec
Confidence 111112233456789999999999999987654 455555433
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=295.63 Aligned_cols=244 Identities=17% Similarity=0.120 Sum_probs=204.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH--HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK--AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~--~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|++|||||++|||++++++|+++|+ +|++++|+.+. ++...+++...+.++.++++|+++.++++++++++.+.++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 80 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLG 80 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 68999999999999999999999995 99999998876 6777777766667899999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++. +++||++||..+..
T Consensus 81 ~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~------------ 146 (258)
T 3a28_C 81 GFDVLVNNAGIAQI-KPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGV-KGKIINAASIAAIQ------------ 146 (258)
T ss_dssp CCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CCEEEEECCGGGTS------------
T ss_pred CCCEEEECCCCCCC-CChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCC-CcEEEEECcchhcc------------
Confidence 99999999998754 35667899999999999999999999999999987541 27999999998774
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh---
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--- 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~--- 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 147 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~ 202 (258)
T 3a28_C 147 -----------------------GFPILSAYSTTKFAVRGLTQAAAQEL-APKGHTVNAYAPGIVGTGMWEQIDAELSKI 202 (258)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSHHHHHHHHHHHHH
T ss_pred -----------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEECCccCChhhhhhhhhhccc
Confidence 44677899999999999999999999 778999999999999998643211000
Q ss_pred -----hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -----~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 203 ~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 255 (258)
T 3a28_C 203 NGKPIGENFKEYSSSIALGRPSVPEDVAGLVSFLASENSNYVTGQVMLVDGGM 255 (258)
T ss_dssp HCCCTTHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred cCCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccCCCCCCEEEECCCE
Confidence 000001111234566889999999999999988888999999999864
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=297.64 Aligned_cols=243 Identities=16% Similarity=0.202 Sum_probs=202.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... +..+.++.+|+++.++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~--- 81 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIE--- 81 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHH---
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHH---
Confidence 468999999999999999999999999995 9999999998888877777543 4568889999999998877664
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 82 -~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 149 (267)
T 3t4x_A 82 -KYPKVDILINNLGIFEP-VEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERK--EGRVIFIASEAAIM-------- 149 (267)
T ss_dssp -HCCCCSEEEECCCCCCC-CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--EEEEEEECCGGGTS--------
T ss_pred -hcCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEEcchhhcc--------
Confidence 46899999999998754 3566889999999999999999999999999998775 48999999998874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+++|++.......
T Consensus 150 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~ 201 (267)
T 3t4x_A 150 ---------------------------PSQEMAHYSATKTMQLSLSRSLAELT-TGTNVTVNTIMPGSTLTEGVETMLNS 201 (267)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECCBCCHHHHHHHHH
T ss_pred ---------------------------CCCcchHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCeecCccHHHHHhh
Confidence 55678899999999999999999999 78899999999999999854321100
Q ss_pred h--------hhhhcchhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 L--------FRLLFPPFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~--------~~~~~~~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ......... ..+.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG~ 262 (267)
T 3t4x_A 202 LYPNEQLTIEEAEKRFMKENRPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGSALRIDGGL 262 (267)
T ss_dssp SSTTSCCCHHHHHHHHHHHHCTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred cCcccCCCHHHHHHHHhhccCCcccccCccCHHHHHHHHHHHcCccccCccCCeEEECCCc
Confidence 0 000011111 123467899999999999999998889999999999975
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-39 Score=292.68 Aligned_cols=239 Identities=19% Similarity=0.212 Sum_probs=199.4
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
++.+.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.+++.+++++
T Consensus 21 ~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 99 (262)
T 3rkr_A 21 DKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATG 99 (262)
T ss_dssp ----CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cchhhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHH
Confidence 4445568999999999999999999999999995 999999999888888888877778899999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 100 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------ 171 (262)
T 3rkr_A 100 VLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAK--RGHIINISSLAGKN------ 171 (262)
T ss_dssp HHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CCEEEEECSSCSSC------
T ss_pred HHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CceEEEEechhhcC------
Confidence 9999999999999999854445667789999999999999999999999999998765 48999999999874
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.++ .+.||+|++|+||+|+|++.....
T Consensus 172 -----------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~ 221 (262)
T 3rkr_A 172 -----------------------------PVADGAAYTASKWGLNGLMTSAAEEL-RQHQVRVSLVAPGSVRTEFGVGLS 221 (262)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC---------
T ss_pred -----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCCcCCcccccc
Confidence 55678899999999999999999999 778999999999999998543211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
...+..++.+|+|+|+.++||+++++...+|+.+..+.
T Consensus 222 -----------~~~~~~~~~~p~dvA~~v~~l~s~~~~~~~g~~~i~p~ 259 (262)
T 3rkr_A 222 -----------AKKSALGAIEPDDIADVVALLATQADQSFISEVLVRPT 259 (262)
T ss_dssp ------------------CCCHHHHHHHHHHHHTCCTTCCEEEEEEECC
T ss_pred -----------cccccccCCCHHHHHHHHHHHhcCccccccCcEEeccc
Confidence 11223457799999999999999988888888876554
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=298.53 Aligned_cols=239 Identities=18% Similarity=0.190 Sum_probs=200.3
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
...++++|++|||||++|||++++++|+++|+ +|++++|+.... ...+..+++|+++.++++++++++.
T Consensus 8 ~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~~~ 76 (269)
T 3vtz_A 8 HMEEFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSD----------VNVSDHFKIDVTNEEEVKEAVEKTT 76 (269)
T ss_dssp --CTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--C----------TTSSEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhc----------cCceeEEEecCCCHHHHHHHHHHHH
Confidence 44578999999999999999999999999995 999999986432 1356789999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 77 ~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 145 (269)
T 3vtz_A 77 KKYGRIDILVNNAGIEQY-SPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG--HGSIINIASVQSYA-------- 145 (269)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS--------
T ss_pred HHcCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhcc--------
Confidence 999999999999998754 3566789999999999999999999999999998765 48999999998874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|+++|++.++.|+ ++ +|+||+|+||+|+|++.......
T Consensus 146 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~-~i~vn~v~PG~v~T~~~~~~~~~ 196 (269)
T 3vtz_A 146 ---------------------------ATKNAAAYVTSKHALLGLTRSVAIDY-AP-KIRCNAVCPGTIMTPMVIKAAKM 196 (269)
T ss_dssp ---------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-TT-TEEEEEEEECSBCCHHHHHHHHH
T ss_pred ---------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-cC-CCEEEEEEECCCcCcchhhhhhc
Confidence 45678899999999999999999999 66 89999999999999865332110
Q ss_pred --------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 279 --------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 279 --------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
............+.+++.+|+|+|++++||+++.+.+++|+.+.+||+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~~ 254 (269)
T 3vtz_A 197 EVGEDENAVERKIEEWGRQHPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGGLL 254 (269)
T ss_dssp HHCCSTTHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred cccccchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCCcc
Confidence 01111222334556778899999999999999988889999999999764
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-39 Score=292.77 Aligned_cols=242 Identities=19% Similarity=0.187 Sum_probs=195.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+. +.++.. +...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAA---IRNLGRRVLTVKCDVSQPGDVEAFGKQVIST 79 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHH---HHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHH---HHhcCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 999999987 555542 2223467899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 80 ~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 146 (249)
T 2ew8_A 80 FGRCDILVNNAGIYPL-IPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWL---------- 146 (249)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGS----------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CeEEEEEcchhhcc----------
Confidence 9999999999998754 3566789999999999999999999999999998764 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.........
T Consensus 147 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 200 (249)
T 2ew8_A 147 -------------------------KIEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAM 200 (249)
T ss_dssp -------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC-------------
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcCcCccchhccccch
Confidence 44677899999999999999999999 7789999999999999986541111000
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+. .+..++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 201 ~~~~~~~~-~~~~~~~~p~dva~~~~~l~s~~~~~~tG~~~~vdGG~ 246 (249)
T 2ew8_A 201 FDVLPNML-QAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 246 (249)
T ss_dssp -----CTT-SSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred hhHHHHhh-CccCCCCCHHHHHHHHHHHcCcccCCCCCcEEEECCCc
Confidence 00011111 34456889999999999999988778999999999864
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=295.74 Aligned_cols=242 Identities=18% Similarity=0.138 Sum_probs=190.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.
T Consensus 3 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (257)
T 3tpc_A 3 MQLKSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAEL---GAAVRFRNADVTNEADATAALAFAKQE 78 (257)
T ss_dssp -CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999987776665554 357899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCC---CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC----CCCCeEEEEecCCCCCCCc
Q 018331 121 GRPLDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~----~~~g~iv~vsS~~~~~~~~ 193 (358)
++++|+||||||....... ..+.+.++|++.+++|+.+++.++++++|+|+++. ...|+||++||..+..
T Consensus 79 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~--- 155 (257)
T 3tpc_A 79 FGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD--- 155 (257)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH---
T ss_pred cCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc---
Confidence 9999999999998754322 12567899999999999999999999999998751 1248999999998874
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||++++.|++.+++|+ .+.||+||+|+||+|+|++..
T Consensus 156 --------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~ 202 (257)
T 3tpc_A 156 --------------------------------GQIGQAAYAASKGGVAALTLPAAREL-ARFGIRVVTIAPGIFDTPMMA 202 (257)
T ss_dssp --------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSCC---
T ss_pred --------------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEeCCCCChhhc
Confidence 45678899999999999999999999 778999999999999998654
Q ss_pred ccchhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 274 REHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... ........+. +++.+|+|+|++++||+++ ..++|+.+.+||+.
T Consensus 203 ~~~~~~---~~~~~~~~p~~~r~~~~~dva~~v~~l~s~--~~itG~~i~vdGG~ 252 (257)
T 3tpc_A 203 GMPQDV---QDALAASVPFPPRLGRAEEYAALVKHICEN--TMLNGEVIRLDGAL 252 (257)
T ss_dssp --------------CCSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred cCCHHH---HHHHHhcCCCCCCCCCHHHHHHHHHHHccc--CCcCCcEEEECCCc
Confidence 321111 1111122233 5788999999999999986 47899999999975
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=295.26 Aligned_cols=231 Identities=22% Similarity=0.174 Sum_probs=185.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++++|+++.++++++++++.+.
T Consensus 24 ~~~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 99 (272)
T 4dyv_A 24 SKTGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIG---DDALCVPTDVTDPDSVRALFTATVEK 99 (272)
T ss_dssp ----CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHT---SCCEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999995 99999999988888777764 67899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.......+.+.+.++|++.+++|+.|++.++++++|.|++++.++|+||++||..+..
T Consensus 100 ~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~---------- 169 (272)
T 4dyv_A 100 FGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS---------- 169 (272)
T ss_dssp HSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS----------
T ss_pred cCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC----------
Confidence 9999999999999755456778899999999999999999999999999987653348999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+++|+++++.|+ .+.||+||+|+||+|+|++.......
T Consensus 170 -------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~-- 221 (272)
T 4dyv_A 170 -------------------------PRPYSAPYTATKHAITGLTKSTSLDG-RVHDIACGQIDIGNADTPMAQKMKAG-- 221 (272)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEEECC------------
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCEEEEEEEECcccChhhhhhccc--
Confidence 55678899999999999999999999 77899999999999999865432111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT 315 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~ 315 (358)
........+..++.+|+|+|++++||++.+...
T Consensus 222 --~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~ 254 (272)
T 4dyv_A 222 --VPQADLSIKVEPVMDVAHVASAVVYMASLPLDA 254 (272)
T ss_dssp ----------------CHHHHHHHHHHHHHSCTTS
T ss_pred --chhhhhcccccCCCCHHHHHHHHHHHhCCCCcC
Confidence 111112334456789999999999999987654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=296.24 Aligned_cols=250 Identities=15% Similarity=0.101 Sum_probs=203.7
Q ss_pred CccCcccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHH
Q 018331 36 SPQGKKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 36 ~~~~~~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
.+.++.++++|++|||||+ +|||++++++|+++|+ +|++++|+. .+...+++.....++.++.+|+++.++++++
T Consensus 17 ~~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 93 (280)
T 3nrc_A 17 RGSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDL 93 (280)
T ss_dssp -----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHH
T ss_pred CCCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHH
Confidence 3556677999999999998 7899999999999995 999999987 2233333433334689999999999999999
Q ss_pred HHHHHhcCCCccEEEEcccccCCC---CCCCC-CCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPT---AKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~---~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
++++.+.++++|+||||||..... ..+.+ .+.++|++.+++|+.+++.++++++|.|.++. ++||++||..+.
T Consensus 94 ~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~ 170 (280)
T 3nrc_A 94 FVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRN---ASMVALTYIGAE 170 (280)
T ss_dssp HHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT---CEEEEEECGGGT
T ss_pred HHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CeEEEEeccccc
Confidence 999999999999999999987431 22233 78999999999999999999999999998763 899999999887
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
. +.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|
T Consensus 171 ~-----------------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T 214 (280)
T 3nrc_A 171 K-----------------------------------AMPSYNTMGVAKASLEATVRYTALAL-GEDGIKVNAVSAGPIKT 214 (280)
T ss_dssp S-----------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCC
T ss_pred c-----------------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeccccc
Confidence 4 55778899999999999999999999 77899999999999999
Q ss_pred CcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 270 TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
++.... ..............+.+++.+|+|+|+.++||+++....++|+.+.+||+..
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 272 (280)
T 3nrc_A 215 LAASGI-SNFKKMLDYNAMVSPLKKNVDIMEVGNTVAFLCSDMATGITGEVVHVDAGYH 272 (280)
T ss_dssp SGGGGC-TTHHHHHHHHHHHSTTCSCCCHHHHHHHHHHTTSGGGTTCCSCEEEESTTGG
T ss_pred hhhhcC-cchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccCCcCCcEEEECCCcc
Confidence 865332 2111222223334456678999999999999999888889999999999753
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=293.55 Aligned_cols=239 Identities=19% Similarity=0.186 Sum_probs=188.9
Q ss_pred CCccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHH
Q 018331 35 SSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 35 ~~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
......+++++|++|||||++|||++++++|+++|+ +|++++|+.+++....+.. .+.++.+|+++.+++++++
T Consensus 17 ~~~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~ 90 (260)
T 3gem_A 17 LYFQGHMTLSSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQA-----GAVALYGDFSCETGIMAFI 90 (260)
T ss_dssp ----------CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHH-----TCEEEECCTTSHHHHHHHH
T ss_pred cccccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhc-----CCeEEECCCCCHHHHHHHH
Confidence 344556789999999999999999999999999995 8999999876654443332 3789999999999999999
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+++.+.++++|+||||||...... .+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 91 ~~~~~~~g~iD~lv~nAg~~~~~~--~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~---- 162 (260)
T 3gem_A 91 DLLKTQTSSLRAVVHNASEWLAET--PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASE--VADIVHISDDVTRK---- 162 (260)
T ss_dssp HHHHHHCSCCSEEEECCCCCCCCC--TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGT----
T ss_pred HHHHHhcCCCCEEEECCCccCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CcEEEEECChhhcC----
Confidence 999999999999999999875432 4667899999999999999999999999999875 48999999998874
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.||+|++.|++.++.|+ .+ +|+||+|+||+++|++...
T Consensus 163 -------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~-~Irvn~v~PG~v~t~~~~~ 209 (260)
T 3gem_A 163 -------------------------------GSSKHIAYCATKAGLESLTLSFAARF-AP-LVKVNGIAPALLMFQPKDD 209 (260)
T ss_dssp -------------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECTTCC-----
T ss_pred -------------------------------CCCCcHhHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEeecccccCCCCC
Confidence 55678899999999999999999999 55 6999999999999985432
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ..........+..++.+|+|+|++++||+. +.+++|+.|.+||+.
T Consensus 210 ~-----~~~~~~~~~~p~~r~~~~edva~~v~~L~~--~~~itG~~i~vdGG~ 255 (260)
T 3gem_A 210 A-----AYRANALAKSALGIEPGAEVIYQSLRYLLD--STYVTGTTLTVNGGR 255 (260)
T ss_dssp ---------------CCSCCCCCTHHHHHHHHHHHH--CSSCCSCEEEESTTT
T ss_pred H-----HHHHHHHhcCCCCCCCCHHHHHHHHHHHhh--CCCCCCCEEEECCCc
Confidence 1 111222334455677899999999999994 457899999999975
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=288.26 Aligned_cols=237 Identities=19% Similarity=0.151 Sum_probs=200.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ .+.++.+|+++.++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 75 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAHL 75 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc-----CCEEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 9999999987777665544 27889999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||.. ..
T Consensus 76 g~id~lvn~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~-~~----------- 140 (245)
T 1uls_A 76 GRLDGVVHYAGITRD-NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRV-YL----------- 140 (245)
T ss_dssp SSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCGG-GG-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEccch-hc-----------
Confidence 999999999998754 3566789999999999999999999999999998764 48999999988 53
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+++..|++.++.|+ .+.||+||+|+||+++|++... ....
T Consensus 141 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~-- 192 (245)
T 1uls_A 141 ------------------------GNLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAK-VPEK-- 192 (245)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSS-SCHH--
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCcCcchhh-cCHH--
Confidence 34567899999999999999999999 7789999999999999986532 1110
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+|+.++||+++++..++|+.+.+||+.
T Consensus 193 ~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 238 (245)
T 1uls_A 193 VREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (245)
T ss_dssp HHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhhCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 1111122234567889999999999999988888999999999974
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=293.22 Aligned_cols=247 Identities=12% Similarity=0.109 Sum_probs=207.0
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++++|++|||||+ +|||++++++|+++|+ +|++++|+....+...+.....+. ++.++++|+++.++++++++++
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASI 81 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHH
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHH
Confidence 36889999999999 6699999999999995 999999987555555444444433 7999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 118 RRSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
.+.++++|+||||||.... ...+.+.+.++|+..+++|+.+++.++++++|+|++ +|+||++||..+..
T Consensus 82 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~g~iv~isS~~~~~---- 153 (266)
T 3oig_A 82 KEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE----GGSIVTLTYLGGEL---- 153 (266)
T ss_dssp HHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT----CEEEEEEECGGGTS----
T ss_pred HHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC----CceEEEEecccccc----
Confidence 9999999999999998752 235567899999999999999999999999999875 37999999998874
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.||+|++.|++.+++|+ .+.||+||+|+||+|+|++...
T Consensus 154 -------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (266)
T 3oig_A 154 -------------------------------VMPNYNVMGVAKASLDASVKYLAADL-GKENIRVNSISAGPIRTLSAKG 201 (266)
T ss_dssp -------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTT
T ss_pred -------------------------------cCCCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCccccccccc
Confidence 55778899999999999999999999 7789999999999999986543
Q ss_pred cchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 275 EHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
...............+.+++.+|+|+|+.+++|+++.+..++|+.+.+||+...
T Consensus 202 -~~~~~~~~~~~~~~~~~~~~~~p~dva~~v~~l~s~~~~~~tG~~i~vdGG~~~ 255 (266)
T 3oig_A 202 -ISDFNSILKDIEERAPLRRTTTPEEVGDTAAFLFSDMSRGITGENLHVDSGFHI 255 (266)
T ss_dssp -CTTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGG
T ss_pred -ccchHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCchhcCcCCEEEECCCeEE
Confidence 222222222333445566788999999999999999888899999999998644
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=295.74 Aligned_cols=246 Identities=20% Similarity=0.196 Sum_probs=207.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||+++++.|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 97 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERY 97 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999995 99999999888877777776556788999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHH--HhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD--LKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~--l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|. |++++ .++||++||..+..
T Consensus 98 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 165 (277)
T 2rhc_B 98 GPVDVLVNNAGRPGG-GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQ--------- 165 (277)
T ss_dssp CSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHT--EEEEEEECCGGGTS---------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcC--CeEEEEECcccccc---------
Confidence 999999999998654 35667899999999999999999999999998 87654 38999999998764
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++......
T Consensus 166 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~ 218 (277)
T 2rhc_B 166 --------------------------GVVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHY 218 (277)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTEEEEEEEEECSBCSHHHHHHHHHH
T ss_pred --------------------------CCCCCccHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEecCcCcCchhhhhhhhc
Confidence 44667899999999999999999999 7789999999999999985432110
Q ss_pred -hh-----hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 -PL-----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 -~~-----~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ...........+.+++.+|+|+|+++++|+++++..++|+.+.+||+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdGG~ 274 (277)
T 2rhc_B 219 SDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 274 (277)
T ss_dssp HHHHTCCHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred ccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCc
Confidence 00 001111122334567889999999999999988878999999999864
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=301.91 Aligned_cols=236 Identities=19% Similarity=0.197 Sum_probs=201.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-------HHHHHHHHhcCCCCceEEEEecCCCHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-------KAERAAKSAGMAKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-------~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+ .++...+++...+.++.++++|+++.++++++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~ 83 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAA 83 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHH
Confidence 568999999999999999999999999995 9999999875 35566666665677899999999999999999
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
++++.+.++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++ .++||++||..+...
T Consensus 84 ~~~~~~~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~-- 158 (285)
T 3sc4_A 84 VAKTVEQFGGIDICVNNASAINL-GSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRD--NPHILTLSPPIRLEP-- 158 (285)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCC-CCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSS--SCEEEECCCCCCCSG--
T ss_pred HHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhccC--
Confidence 99999999999999999999754 4677889999999999999999999999999998865 489999999887641
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC-cccCCcc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG-CIATTGL 272 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG-~v~t~~~ 272 (358)
.+++...|+.||+|+++|+++++.|+ ++.||+||+|+|| .+.|++.
T Consensus 159 --------------------------------~~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~v~PG~~v~t~~~ 205 (285)
T 3sc4_A 159 --------------------------------KWLRPTPYMMAKYGMTLCALGIAEEL-RDAGIASNTLWPRTTVATAAV 205 (285)
T ss_dssp --------------------------------GGSCSHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECSSCBCCHHH
T ss_pred --------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeCCCccccHHH
Confidence 12456889999999999999999999 7789999999999 6888744
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... ...+..++.+|+|+|+.++||+++++ .++|+.+..|+.
T Consensus 206 ~~~~~----------~~~~~~r~~~pedvA~~~~~l~s~~~-~~tG~~i~~dgg 248 (285)
T 3sc4_A 206 QNLLG----------GDEAMARSRKPEVYADAAYVVLNKPS-SYTGNTLLCEDV 248 (285)
T ss_dssp HHHHT----------SCCCCTTCBCTHHHHHHHHHHHTSCT-TCCSCEEEHHHH
T ss_pred Hhhcc----------ccccccCCCCHHHHHHHHHHHhCCcc-cccceEEEEcCc
Confidence 22110 01123467899999999999999988 899999987764
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-39 Score=293.68 Aligned_cols=249 Identities=13% Similarity=0.083 Sum_probs=200.0
Q ss_pred ccCcccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
+....++++|++|||||+ +|||++++++|+++|+ +|++++|+....+... ++.....++.++++|+++.+++++++
T Consensus 6 ~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (271)
T 3ek2_A 6 HHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRIT-EFAAEFGSELVFPCDVADDAQIDALF 83 (271)
T ss_dssp ---CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHH-HHHHHTTCCCEEECCTTCHHHHHHHH
T ss_pred CCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHH-HHHHHcCCcEEEECCCCCHHHHHHHH
Confidence 344567999999999999 9999999999999995 9999999864443333 33222345889999999999999999
Q ss_pred HHHHhcCCCccEEEEcccccCC----CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~ 190 (358)
+++.+.++++|+||||||.... ....++.+.++|++.+++|+.+++.++++++|+|++. ++||++||..+..
T Consensus 84 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----g~iv~isS~~~~~ 159 (271)
T 3ek2_A 84 ASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDD----ASLLTLSYLGAER 159 (271)
T ss_dssp HHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEE----EEEEEEECGGGTS
T ss_pred HHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccC----ceEEEEecccccc
Confidence 9999999999999999998753 3233338999999999999999999999999999753 7999999998874
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|+
T Consensus 160 -----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~ 203 (271)
T 3ek2_A 160 -----------------------------------AIPNYNTMGLAKAALEASVRYLAVSL-GAKGVRVNAISAGPIKTL 203 (271)
T ss_dssp -----------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCC---
T ss_pred -----------------------------------CCCCccchhHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccch
Confidence 45678899999999999999999999 788999999999999998
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+.... ..............+.+++.+|+|+|+.++||+++.+..++|+.|.+||+..
T Consensus 204 ~~~~~-~~~~~~~~~~~~~~~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~ 260 (271)
T 3ek2_A 204 AASGI-KSFGKILDFVESNSPLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFN 260 (271)
T ss_dssp --CCC-HHHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGG
T ss_pred hhhcc-cchHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCee
Confidence 65432 1111222223334556678899999999999999888889999999999863
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-39 Score=294.84 Aligned_cols=243 Identities=20% Similarity=0.210 Sum_probs=206.2
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEE-EEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHI-IMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~V-i~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..++.+|++|||||++|||++++++|+++|+ +| ++..|+....+...+++...+.++.++.+|+++.++++++++++.
T Consensus 21 ~~~l~~k~vlVTGas~gIG~~la~~l~~~G~-~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 99 (267)
T 4iiu_A 21 QSNAMSRSVLVTGASKGIGRAIARQLAADGF-NIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEI 99 (267)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHH
Confidence 3568899999999999999999999999996 66 556788777888888777777889999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHh-cCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLK-QSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~-~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.+++.|. ++. .++||++||..+..
T Consensus 100 ~~~g~id~li~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~--~g~iv~isS~~~~~------- 169 (267)
T 4iiu_A 100 AQHGAWYGVVSNAGIARD-AAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQ--GGRIITLSSVSGVM------- 169 (267)
T ss_dssp HHHCCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS--CEEEEEECCHHHHH-------
T ss_pred HHhCCccEEEECCCCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC--CcEEEEEcchHhcc-------
Confidence 999999999999998754 4566789999999999999999999999999886 333 48999999998774
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+|++|+||+++|++.....
T Consensus 170 ----------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~- 219 (267)
T 4iiu_A 170 ----------------------------GNRGQVNYSAAKAGIIGATKALAIEL-AKRKITVNCIAPGLIDTGMIEMEE- 219 (267)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTCCCCH-
T ss_pred ----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEEeeecCCcccccH-
Confidence 45678899999999999999999999 778999999999999998664431
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+.+++.+|+|+|++++||+++.+..++|+.+.+||+
T Consensus 220 ---~~~~~~~~~~p~~~~~~~edva~~~~~L~s~~~~~itG~~i~vdGG 265 (267)
T 4iiu_A 220 ---SALKEAMSMIPMKRMGQAEEVAGLASYLMSDIAGYVTRQVISINGG 265 (267)
T ss_dssp ---HHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ---HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCccCCEEEeCCC
Confidence 1122233344556788999999999999999888899999999986
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-39 Score=296.48 Aligned_cols=247 Identities=17% Similarity=0.135 Sum_probs=199.4
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhc-CCCCceEEEEecCCC----HHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAG-MAKENYTIMHLDLAS----LDSVR 111 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~-~~~~~i~~~~~Dl~~----~~~i~ 111 (358)
+...++++|++|||||++|||+++++.|+++|+ +|++++|+. +.++...+++. ..+.++.++++|+++ .++++
T Consensus 16 ~~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~ 94 (288)
T 2x9g_A 16 PRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCE 94 (288)
T ss_dssp ------CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHH
Confidence 334578999999999999999999999999995 999999997 77777766665 345689999999999 99999
Q ss_pred HHHHHHHhcCCCccEEEEcccccCCCCCC-----CC-----CCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CC
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAVYLPTAKE-----PT-----FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PS 177 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~~~~~~~~-----~~-----~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~ 177 (358)
++++++.+.++++|+||||||..... .+ .+ .+.++|++.+++|+.+++.++++++|.|++++. ..
T Consensus 95 ~~~~~~~~~~g~iD~lvnnAG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~ 173 (288)
T 2x9g_A 95 EIINSCFRAFGRCDVLVNNASAFYPT-PLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSN 173 (288)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCC-CSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCCCCCC-ccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence 99999999999999999999987543 33 45 778999999999999999999999999987531 13
Q ss_pred CeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc
Q 018331 178 KRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI 257 (358)
Q Consensus 178 g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI 257 (358)
++||++||..+.. +.++...|+.||++++.|++.++.|+ .+.||
T Consensus 174 g~iv~isS~~~~~-----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI 217 (288)
T 2x9g_A 174 LSIVNLCDAMVDQ-----------------------------------PCMAFSLYNMGKHALVGLTQSAALEL-APYGI 217 (288)
T ss_dssp EEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTE
T ss_pred eEEEEEecccccC-----------------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hccCe
Confidence 7999999998874 45678899999999999999999999 77899
Q ss_pred EEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCc-cchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 258 AFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGY-VSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 258 ~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+||+|+||+++|++ . .. +. .........+..++ .+|+|+|+.++||+++.+.+++|+++.+||+.
T Consensus 218 ~vn~v~PG~v~t~~-~-~~-~~--~~~~~~~~~p~~r~~~~pedvA~~v~~l~s~~~~~itG~~i~vdGG~ 283 (288)
T 2x9g_A 218 RVNGVAPGVSLLPV-A-MG-EE--EKDKWRRKVPLGRREASAEQIADAVIFLVSGSAQYITGSIIKVDGGL 283 (288)
T ss_dssp EEEEEEESSCSCCT-T-SC-HH--HHHHHHHTCTTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred EEEEEEeccccCcc-c-cC-hH--HHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCCEEEECcch
Confidence 99999999999986 2 11 11 11111222344566 89999999999999988888999999999874
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=287.59 Aligned_cols=233 Identities=22% Similarity=0.228 Sum_probs=200.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecC--CCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDL--ASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl--~~~~~i~~~~~~~ 117 (358)
.++++|++|||||++|||++++++|+++|+ +|++++|+...++...+++...+ .+..++.+|+ ++.++++++++++
T Consensus 10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~ 88 (247)
T 3i1j_A 10 ELLKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARV 88 (247)
T ss_dssp TTTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHH
Confidence 468999999999999999999999999995 99999999988888877776543 5677777777 9999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|+||||||......++.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~------- 159 (247)
T 3i1j_A 89 EHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSE--DASIAFTSSSVGRK------- 159 (247)
T ss_dssp HHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SEEEEEECCGGGTS-------
T ss_pred HHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCeEEEEcchhhcC-------
Confidence 999999999999999875555677889999999999999999999999999998765 48999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc-CCcEEEEecCCcccCCcccccc
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.|+ .+ +||+||+|+||+++|++.....
T Consensus 160 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~i~v~~v~PG~v~t~~~~~~~ 210 (247)
T 3i1j_A 160 ----------------------------GRANWGAYGVSKFATEGLMQTLADEL-EGVTAVRANSINPGATRTGMRAQAY 210 (247)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTSSEEEEEEECCCCSSHHHHHHS
T ss_pred ----------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCcccCccchhcc
Confidence 55678899999999999999999999 54 7999999999999998543211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
.. ....+..+|+|+|+.++||+++.+..+||+.|..
T Consensus 211 ~~-----------~~~~~~~~p~dva~~~~~l~s~~~~~itG~~i~~ 246 (247)
T 3i1j_A 211 PD-----------ENPLNNPAPEDIMPVYLYLMGPDSTGINGQALNA 246 (247)
T ss_dssp TT-----------SCGGGSCCGGGGTHHHHHHHSGGGTTCCSCEEEC
T ss_pred cc-----------cCccCCCCHHHHHHHHHHHhCchhccccCeeecC
Confidence 10 0112456899999999999999888899999864
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=291.53 Aligned_cols=244 Identities=19% Similarity=0.157 Sum_probs=203.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 80 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 80 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 68999999999999999999999995 99999999888877777776556688999999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|++++. .++||++||..+..
T Consensus 81 d~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~-------------- 144 (256)
T 1geg_A 81 DVIVNNAGVAPS-TPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHV-------------- 144 (256)
T ss_dssp CEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS--------------
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-CCEEEEECchhhcC--------------
Confidence 999999998644 35667899999999999999999999999999987531 27999999998774
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-----
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL----- 279 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~----- 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 145 ---------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~ 202 (256)
T 1geg_A 145 ---------------------GNPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAG 202 (256)
T ss_dssp ---------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHT
T ss_pred ---------------------CCCCchhHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCCccchhhhhhhhcccccc
Confidence 44667899999999999999999999 778999999999999998643210000
Q ss_pred --hhhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 --FRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 --~~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... .....+..++.+|+|+|+.++||+++++.+++|+.+.+||+.
T Consensus 203 ~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 253 (256)
T 1geg_A 203 KPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 253 (256)
T ss_dssp CCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred CChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 000001 111234467889999999999999988888999999999864
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=299.01 Aligned_cols=246 Identities=17% Similarity=0.153 Sum_probs=205.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC---ceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~---~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++++|++|||||++|||+++++.|+++|+ +|++++|+.+.++...+++...+. ++.++.+|+++.++++++++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 100 (297)
T 1xhl_A 22 ARFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTT 100 (297)
T ss_dssp -CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 468999999999999999999999999995 999999998888777777654444 7899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCC--CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAK--EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.+.++++|+||||||..... . +.+.+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..
T Consensus 101 ~~~~g~iD~lvnnAG~~~~~-~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---g~IV~isS~~~~~----- 171 (297)
T 1xhl_A 101 LAKFGKIDILVNNAGANLAD-GTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK---GEIVNVSSIVAGP----- 171 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCC-SCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CEEEEECCGGGSS-----
T ss_pred HHhcCCCCEEEECCCcCcCC-CCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC---CEEEEEcCchhcc-----
Confidence 99999999999999986442 3 56788999999999999999999999999998764 7999999998763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+. ++...|+.||++++.|++.++.|+ ++.||+||+|+||+++|++...
T Consensus 172 ------------------------------~~~~~~~~Y~asKaa~~~l~~~la~el-~~~gI~v~~v~PG~v~T~~~~~ 220 (297)
T 1xhl_A 172 ------------------------------QAHSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGA 220 (297)
T ss_dssp ------------------------------SCCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHH
T ss_pred ------------------------------CCCCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcCccccc
Confidence 33 567889999999999999999999 7789999999999999986432
Q ss_pred cc--hh----hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCCC
Q 018331 275 EH--IP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 327 (358)
Q Consensus 275 ~~--~~----~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~~ 327 (358)
.. .. ............+..++.+|+|+|+.++||++++ +.+++|+.+.+||+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~~itG~~i~vdGG~ 280 (297)
T 1xhl_A 221 MGLPETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGS 280 (297)
T ss_dssp TTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred cccccccccchHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCcEEEECCCc
Confidence 21 00 0000011111234567889999999999999987 778999999999975
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-39 Score=293.41 Aligned_cols=238 Identities=19% Similarity=0.186 Sum_probs=194.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 80 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWG 80 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999995 999999999888888888877778899999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||+... ..+.+.+.++|++++++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 81 ~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~IV~isS~~~~~------------ 145 (264)
T 3tfo_A 81 RIDVLVNNAGVMPL-SPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR--SGQIINIGSIGALS------------ 145 (264)
T ss_dssp CCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC------------
T ss_pred CCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CeEEEEEcCHHHcc------------
Confidence 99999999998754 4667889999999999999999999999999998765 48999999998874
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||+|+++|+++++.|+ +||+||+|+||+|+|++...........
T Consensus 146 -----------------------~~~~~~~Y~asKaal~~l~~~la~e~---~gIrvn~v~PG~v~T~~~~~~~~~~~~~ 199 (264)
T 3tfo_A 146 -----------------------VVPTAAVYCATKFAVRAISDGLRQES---TNIRVTCVNPGVVESELAGTITHEETMA 199 (264)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHC---SSEEEEEEEECCC---------------
T ss_pred -----------------------cCCCChhHHHHHHHHHHHHHHHHHhC---CCCEEEEEecCCCcCcccccccchhHHH
Confidence 55778899999999999999999997 3999999999999998654321111000
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.... ......+|+|+|++++||++++....+|+.+..++.
T Consensus 200 ~~~~----~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~i~p~~ 239 (264)
T 3tfo_A 200 AMDT----YRAIALQPADIARAVRQVIEAPQSVDTTEITIRPTA 239 (264)
T ss_dssp ------------CCCHHHHHHHHHHHHHSCTTEEEEEEEEEECC
T ss_pred HHHh----hhccCCCHHHHHHHHHHHhcCCccCccceEEEecCc
Confidence 0011 112246999999999999999988788887765543
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=286.39 Aligned_cols=227 Identities=18% Similarity=0.210 Sum_probs=188.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++.+|+++.++++++++++.+.++
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~g 76 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLG---NAVIGIVADLAHHEDVDVAFAAAVEWGG 76 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTSHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3578999999999999999999999995 99999999988888777773 3689999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ ++||++||..+..
T Consensus 77 ~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~------------ 140 (235)
T 3l6e_A 77 LPELVLHCAGTGEF-GPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG---GVLANVLSSAAQV------------ 140 (235)
T ss_dssp SCSEEEEECCCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---EEEEEECCEECCS------------
T ss_pred CCcEEEECCCCCCC-CChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC---CEEEEEeCHHhcC------------
Confidence 99999999998644 4566889999999999999999999999999998764 6999999998874
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+|+|++......
T Consensus 141 -----------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~----- 191 (235)
T 3l6e_A 141 -----------------------GKANESLYCASKWGMRGFLESLRAEL-KDSPLRLVNLYPSGIRSEFWDNTDH----- 191 (235)
T ss_dssp -----------------------SCSSHHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEEEEECCCC-----------
T ss_pred -----------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-hccCCEEEEEeCCCccCcchhccCC-----
Confidence 55678899999999999999999999 7889999999999999986533211
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCC-CCCceeeecCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNK 325 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~-~~~G~~~~~d~ 325 (358)
.+..++.+|+|+|+.++++++++.. .++|.++....
T Consensus 192 -------~~~~~~~~pedvA~~v~~l~~~~~~~~i~~i~~~~~~ 228 (235)
T 3l6e_A 192 -------VDPSGFMTPEDAAAYMLDALEARSSCHVTDLFIGRNE 228 (235)
T ss_dssp ------------CBCHHHHHHHHHHHTCCCSSEEEEEEEEEECC
T ss_pred -------CCCcCCCCHHHHHHHHHHHHhCCCCcceeeEEEecCC
Confidence 1223678999999999999985543 47787776554
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=291.75 Aligned_cols=241 Identities=20% Similarity=0.151 Sum_probs=203.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---CCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 9999999987777766655 3578899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 78 g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 143 (254)
T 1hdc_A 78 GSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLM----------- 143 (254)
T ss_dssp SCCCEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CCEEEEECchhhcc-----------
Confidence 999999999998754 3556788999999999999999999999999998764 38999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... ..+ .
T Consensus 144 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~--~ 195 (254)
T 1hdc_A 144 ------------------------GLALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAE-TGI--R 195 (254)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-HTC--C
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccCcCccccc-cch--h
Confidence 44667899999999999999999999 7789999999999999985432 110 0
Q ss_pred hhcchhHHhhhcCcc-chhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 282 LLFPPFQKYITKGYV-SEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.........+..++. +|+|+|+.+++|+++++..++|+++..||...
T Consensus 196 ~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 243 (254)
T 1hdc_A 196 QGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGWT 243 (254)
T ss_dssp CSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCCEEEECCCcc
Confidence 001111122445677 99999999999999888789999999999753
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-39 Score=294.07 Aligned_cols=234 Identities=17% Similarity=0.262 Sum_probs=195.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--C-CceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--K-ENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~-~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... + .++.++++|+++.++++++++++.
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 82 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIH 82 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999995 9999999998888877776443 2 678999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||..... .+ +.+.++|++.+++|+.+++.++++++|.|++++ .|+||++||..+..
T Consensus 83 ~~~g~iD~lvnnAg~~~~~-~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 150 (250)
T 3nyw_A 83 QKYGAVDILVNAAAMFMDG-SL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQK--NGYIFNVASRAAKY-------- 150 (250)
T ss_dssp HHHCCEEEEEECCCCCCCC-CC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECC-------------
T ss_pred HhcCCCCEEEECCCcCCCC-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CeEEEEEccHHhcC--------
Confidence 9999999999999997553 44 678899999999999999999999999998765 48999999998874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+||+|+||+++|++......
T Consensus 151 ---------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~- 201 (250)
T 3nyw_A 151 ---------------------------GFADGGIYGSTKFALLGLAESLYREL-APLGIRVTTLCPGWVNTDMAKKAGT- 201 (250)
T ss_dssp -----------------------------CCTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHTTC-
T ss_pred ---------------------------CCCCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCchhhhcCC-
Confidence 23447789999999999999999999 7789999999999999985432110
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d~~~ 327 (358)
..+..++.+|+|+|+.++||+++++.. ++|..+..||..
T Consensus 202 ----------~~~~~~~~~p~dva~~v~~l~s~~~~~~~~~~~i~vd~~~ 241 (250)
T 3nyw_A 202 ----------PFKDEEMIQPDDLLNTIRCLLNLSENVCIKDIVFEMKKSI 241 (250)
T ss_dssp ----------CSCGGGSBCHHHHHHHHHHHHTSCTTEECCEEEEEEHHHH
T ss_pred ----------CcccccCCCHHHHHHHHHHHHcCCCceEeeEEEEEeeccc
Confidence 112345789999999999999977654 788888888764
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-39 Score=295.55 Aligned_cols=245 Identities=16% Similarity=0.145 Sum_probs=204.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC---ceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~---~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+. ++.++.+|+++.++++++++++.
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTL 81 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999995 999999998888877777765444 78999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCC----CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAK----EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+.++++|+||||||..... . +.+.+.+.|++.+++|+.+++.++++++|.|.+++ ++||++||..+..
T Consensus 82 ~~~g~iD~lv~nAg~~~~~-~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~---- 153 (280)
T 1xkq_A 82 KQFGKIDVLVNNAGAAIPD-AFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGP---- 153 (280)
T ss_dssp HHHSCCCEEEECCCCCCCC-TTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSS----
T ss_pred HhcCCCCEEEECCCCCCCC-CCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC---CcEEEecCccccC----
Confidence 9999999999999986442 3 55778999999999999999999999999998653 7999999998763
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+. ++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++..
T Consensus 154 -------------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~ 201 (280)
T 1xkq_A 154 -------------------------------QAQPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTN 201 (280)
T ss_dssp -------------------------------SCCCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHH
T ss_pred -------------------------------CCCCcccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEeeCcCcCCccc
Confidence 23 567899999999999999999999 778999999999999998643
Q ss_pred ccc--hh----hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCCC
Q 018331 274 REH--IP----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 327 (358)
Q Consensus 274 ~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~~ 327 (358)
... .. ............+.+++.+|+|+|+.++||++++ +.+++|+.+.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~~i~vdgG~ 262 (280)
T 1xkq_A 202 AMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGT 262 (280)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ccccccccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHHhcCcccccCccCCeEEECCCc
Confidence 321 00 0000111111234567889999999999999987 777999999999975
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=286.20 Aligned_cols=235 Identities=23% Similarity=0.287 Sum_probs=198.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.+
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 82 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEAL 82 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999999999995 99999999888887777776556789999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ |+||++||..+..
T Consensus 83 g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 147 (247)
T 2jah_A 83 GGLDILVNNAGIMLL-GPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK---GTVVQMSSIAGRV----------- 147 (247)
T ss_dssp SCCSEEEECCCCCCC-CCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC---CEEEEEccHHhcC-----------
Confidence 999999999998744 4667889999999999999999999999999998753 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 148 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~-- 200 (247)
T 2jah_A 148 ------------------------NVRNAAVYQATKFGVNAFSETLRQEV-TERGVRVVVIEPGTTDTELRGHITHTA-- 200 (247)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCCCHH--
T ss_pred ------------------------CCCCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCCCCCcchhcccchh--
Confidence 45677899999999999999999999 778999999999999998653311111
Q ss_pred hhcchhHHhhhcCc--cchhHHhhhhhhhhcCCCCCCCceee
Q 018331 282 LLFPPFQKYITKGY--VSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 282 ~~~~~~~~~~~~~~--~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
....+...+ .++ .+|+|+|+.++|+++++....++.+.
T Consensus 201 -~~~~~~~~~-~~~~~~~pedvA~~v~~l~s~~~~~~~~~i~ 240 (247)
T 2jah_A 201 -TKEMYEQRI-SQIRKLQAQDIAEAVRYAVTAPHHATVHEIF 240 (247)
T ss_dssp -HHHHHHHHT-TTSCCBCHHHHHHHHHHHHHSCTTEEEEEEE
T ss_pred -hHHHHHhcc-cccCCCCHHHHHHHHHHHhCCCccCccceEE
Confidence 111112222 344 89999999999999987766666543
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=293.73 Aligned_cols=246 Identities=17% Similarity=0.185 Sum_probs=201.6
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..++++|++|||||++|||++++++|+++|+ +|++++|+... .+...+++...+.++.++.+|+++.+++.++++++.
T Consensus 24 ~~~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 102 (283)
T 1g0o_A 24 SASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAV 102 (283)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999999999995 99999988643 455555565556789999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.. .++||++||..+..
T Consensus 103 ~~~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~-------- 169 (283)
T 1g0o_A 103 KIFGKLDIVCSNSGVVSF-GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI----GGRLILMGSITGQA-------- 169 (283)
T ss_dssp HHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT----TCEEEEECCGGGTC--------
T ss_pred HHcCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc----CCeEEEEechhhcc--------
Confidence 999999999999998754 35667899999999999999999999999999932 37999999988763
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+ +...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++......
T Consensus 170 ---------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~ 221 (283)
T 1g0o_A 170 ---------------------------KAVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCR 221 (283)
T ss_dssp ---------------------------SSCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGG
T ss_pred ---------------------------CCCCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccchhhhhhhh
Confidence 222 36789999999999999999999 7789999999999999986432110
Q ss_pred hh-------hhhhcchh-H--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PL-------FRLLFPPF-Q--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~-------~~~~~~~~-~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. .......+ . ..+.+++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdgG~ 281 (283)
T 1g0o_A 222 EYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 281 (283)
T ss_dssp GGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hccccccccCHHHHHHHHhhcCCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCCc
Confidence 00 00001111 1 234566889999999999999988888999999999863
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=293.24 Aligned_cols=245 Identities=18% Similarity=0.181 Sum_probs=196.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh---cCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~---~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ ...+.++.++.+|+++.++++++++++.
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 81 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHH
Confidence 47899999999999999999999999995 9999999988887777766 4445678999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCC----CHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC-CCCCc
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTF----TAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTL 193 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~----~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~-~~~~~ 193 (358)
+.++++|+||||||.... ..+.+. +.++|++.+++|+.+++.++++++|.|++++ ++||++||..+ ..
T Consensus 82 ~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~~--- 154 (278)
T 1spx_A 82 GKFGKLDILVNNAGAAIP-DSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGLH--- 154 (278)
T ss_dssp HHHSCCCEEEECCC--------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSSS---
T ss_pred HHcCCCCEEEECCCCCCC-cccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEeccccccc---
Confidence 999999999999998644 344566 8899999999999999999999999998753 79999999987 53
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||++++.|++.++.|+ .+.||++|+|+||++.|++..
T Consensus 155 --------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 201 (278)
T 1spx_A 155 --------------------------------ATPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGS 201 (278)
T ss_dssp --------------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC--
T ss_pred --------------------------------CCCCccHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccCcccc
Confidence 44567889999999999999999999 778999999999999998653
Q ss_pred ccchhhhhh------hcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecCCCC
Q 018331 274 REHIPLFRL------LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNKDS 327 (358)
Q Consensus 274 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d~~~ 327 (358)
....+.... ........+..++.+|+|+|+.+++|++++... ++|+++..||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~~tG~~~~vdgG~ 262 (278)
T 1spx_A 202 AMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 262 (278)
T ss_dssp ------------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred ccccCchhhhhhhHHHHHHHhcCCCcCCCCHHHHHHHHHHHcCccccCcccCcEEEECCCc
Confidence 321110000 111112234467889999999999999987666 899999999874
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=290.76 Aligned_cols=245 Identities=16% Similarity=0.172 Sum_probs=202.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... +.++.++.+|+++.++++++++++.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARD 82 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 9999999988777776666432 33789999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++ +|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 83 ~~g-id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------- 149 (260)
T 2z1n_A 83 LGG-ADILVYSTGGPRP-GRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG--WGRMVYIGSVTLLR--------- 149 (260)
T ss_dssp TTC-CSEEEECCCCCCC-BCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred hcC-CCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECchhhcC---------
Confidence 998 9999999998643 3566788999999999999999999999999998764 38999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++......
T Consensus 150 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (260)
T 2z1n_A 150 --------------------------PWQDLALSNIMRLPVIGVVRTLALEL-APHGVTVNAVLPSLILTDRVRSLAEER 202 (260)
T ss_dssp --------------------------CCTTBHHHHHHTHHHHHHHHHHHHHH-GGGTEEEEEEEECHHHHCCCC------
T ss_pred --------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEECCcccchhhhhhhhh
Confidence 44677899999999999999999999 7789999999999999986541100
Q ss_pred ----hhhhh--hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 ----PLFRL--LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ----~~~~~--~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ........+.+++.+|+|+|+.++||+++++..++|+.+.+||+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~~i~vdGG~ 258 (260)
T 2z1n_A 203 ARRSGITVEEALKSMASRIPMGRVGKPEELASVVAFLASEKASFITGAVIPVDGGA 258 (260)
T ss_dssp -----------------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred hcccCCcHHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCccccCCCCCEEEeCCCc
Confidence 00000 111112234566789999999999999988888999999999863
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=305.03 Aligned_cols=249 Identities=17% Similarity=0.139 Sum_probs=206.4
Q ss_pred CccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC----------hHHHHHHHHHhcCCCCceEEEEecCC
Q 018331 36 SPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD----------FLKAERAAKSAGMAKENYTIMHLDLA 105 (358)
Q Consensus 36 ~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~----------~~~~~~~~~~~~~~~~~i~~~~~Dl~ 105 (358)
.|..+.+++||++|||||++|||+++|++|+++|+ +|++++|+ .+.++...+++...+.++.++.+|++
T Consensus 18 ~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 96 (322)
T 3qlj_A 18 GPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVA 96 (322)
T ss_dssp ----CCTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTT
T ss_pred CCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCC
Confidence 34445679999999999999999999999999995 99999987 66777777777766778999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CCCeEE
Q 018331 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLI 181 (358)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~g~iv 181 (358)
+.++++++++++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+... .+|+||
T Consensus 97 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV 175 (322)
T 3qlj_A 97 DWDQAAGLIQTAVETFGGLDVLVNNAGIVRD-RMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRII 175 (322)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEECCCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEE
Confidence 9999999999999999999999999999755 35678899999999999999999999999999875321 137999
Q ss_pred EEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEE
Q 018331 182 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFAS 261 (358)
Q Consensus 182 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~ 261 (358)
++||..+.. +.++...|+.||+|++.|++.++.|+ ++.||+||+
T Consensus 176 ~isS~~~~~-----------------------------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~ 219 (322)
T 3qlj_A 176 NTSSGAGLQ-----------------------------------GSVGQGNYSAAKAGIATLTLVGAAEM-GRYGVTVNA 219 (322)
T ss_dssp EECCHHHHH-----------------------------------CBTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEE
T ss_pred EEcCHHHcc-----------------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEE
Confidence 999998774 45678899999999999999999999 778999999
Q ss_pred ecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 262 LYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 262 v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
|+|| +.|++.......... ......+..+|+|+|.+++||+++.+.+++|++|.+||+...
T Consensus 220 v~PG-~~t~~~~~~~~~~~~------~~~~~~~~~~pedva~~v~~L~s~~~~~itG~~i~vdGG~~~ 280 (322)
T 3qlj_A 220 IAPS-ARTRMTETVFAEMMA------TQDQDFDAMAPENVSPLVVWLGSAEARDVTGKVFEVEGGKIR 280 (322)
T ss_dssp EEEC-TTSCCSCCSCCC--------------CCTTCGGGTHHHHHHHTSGGGGGCCSCEEEEETTEEE
T ss_pred ecCC-CCCccchhhhhhhhh------ccccccCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCccc
Confidence 9999 889866443211110 111112456899999999999999888899999999997643
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=299.10 Aligned_cols=243 Identities=15% Similarity=0.116 Sum_probs=202.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe-cChHHHHHHHHHhc-CCCCceEEEEecCCCHH-----------
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAG-MAKENYTIMHLDLASLD----------- 108 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~-r~~~~~~~~~~~~~-~~~~~i~~~~~Dl~~~~----------- 108 (358)
++++|++|||||++|||+++++.|+++|+ +|++++ |+.+.++...+++. ..+.++.++++|+++.+
T Consensus 43 ~l~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 121 (328)
T 2qhx_A 43 APTVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSA 121 (328)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------C
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccc
Confidence 48999999999999999999999999995 999999 99888877777765 34568999999999999
Q ss_pred ------HHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCC--------------HHhHHhhhhhhhhHHHHHHHHHHH
Q 018331 109 ------SVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT--------------AEGFELSVGTNHLGHFLLSRLLLD 168 (358)
Q Consensus 109 ------~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~--------------~~~~~~~~~vN~~~~~~l~~~~~~ 168 (358)
+++++++++.+.++++|+||||||+... ..+.+.+ .++|+..+++|+.+++.++++++|
T Consensus 122 ~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~ 200 (328)
T 2qhx_A 122 PVTLFTRCAELVAACYTHWGRCDVLVNNASSFYP-TPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAH 200 (328)
T ss_dssp CBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCC-CCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCC-CChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998754 3555677 899999999999999999999999
Q ss_pred HHhcCCC----CCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHH
Q 018331 169 DLKQSDY----PSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 244 (358)
Q Consensus 169 ~l~~~~~----~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~ 244 (358)
.|.+++. ..++||++||..+.. +.++...|+.||++++.|+
T Consensus 201 ~m~~~~~~~~~~~g~IV~isS~~~~~-----------------------------------~~~~~~~Y~asKaal~~l~ 245 (328)
T 2qhx_A 201 RVAGTPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGLT 245 (328)
T ss_dssp HHHHSCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCCcCCCCCcEEEEECchhhcc-----------------------------------CCCCcHHHHHHHHHHHHHH
Confidence 9987530 037999999998874 4567889999999999999
Q ss_pred HHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhc-CccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 245 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 245 ~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
+.++.|+ .+.||+||+|+||+|+|++ ... + ..........+.. ++.+|+|+|++++||+++....++|+++.+
T Consensus 246 ~~la~el-~~~gIrvn~v~PG~v~T~~--~~~-~--~~~~~~~~~~p~~~r~~~pedvA~~v~~l~s~~~~~itG~~i~v 319 (328)
T 2qhx_A 246 RSAALEL-APLQIRVNGVGPGLSVLVD--DMP-P--AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKV 319 (328)
T ss_dssp HHHHHHH-GGGTEEEEEEEESSBSCCC--CSC-H--HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEE
T ss_pred HHHHHHH-hhcCcEEEEEecCcccCCc--ccc-H--HHHHHHHhhCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEE
Confidence 9999999 7789999999999999986 322 1 1111111223445 678999999999999998888899999999
Q ss_pred CCCC
Q 018331 324 NKDS 327 (358)
Q Consensus 324 d~~~ 327 (358)
||+.
T Consensus 320 dGG~ 323 (328)
T 2qhx_A 320 DGGY 323 (328)
T ss_dssp STTG
T ss_pred CCCc
Confidence 9874
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=288.90 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=199.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++.+|+++.++++++++++.+.+
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE---AEAIAVVADVSDPKAVEAVFAEALEEF 78 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC---SSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999887777766654 578899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+| ++ .++||++||..+.
T Consensus 79 g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~---~g~iv~isS~~~~------------ 141 (263)
T 2a4k_A 79 GRLHGVAHFAGVAHS-ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE---GGSLVLTGSVAGL------------ 141 (263)
T ss_dssp SCCCEEEEGGGGTTT-TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT---TCEEEEECCCTTC------------
T ss_pred CCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc---CCEEEEEecchhc------------
Confidence 999999999998754 356678999999999999999999999999999 44 3899999998875
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... ..+.
T Consensus 142 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~~-- 193 (263)
T 2a4k_A 142 ------------------------GAFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAG-LPPW-- 193 (263)
T ss_dssp ------------------------CHHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTT-SCHH--
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCcCcCchhhh-cCHH--
Confidence 23577899999999999999999999 7789999999999999986533 1111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.........+..++.+|+|+|+.+++|+++++..++|+++.+||...
T Consensus 194 ~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdgG~~ 240 (263)
T 2a4k_A 194 AWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGRS 240 (263)
T ss_dssp HHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTTT
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCCcc
Confidence 01111222344678899999999999999888789999999999753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=289.88 Aligned_cols=244 Identities=19% Similarity=0.229 Sum_probs=201.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+ +...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 1 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 77 (255)
T 2q2v_A 1 TLKGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREF 77 (255)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 36899999999999999999999999995 9999999865 34445554445678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 78 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 143 (255)
T 2q2v_A 78 GGVDILVNNAGIQHV-APVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN--WGRIINIASVHGLV----------- 143 (255)
T ss_dssp SSCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcCchhcc-----------
Confidence 999999999998643 3556778999999999999999999999999998765 38999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||++.|++..........
T Consensus 144 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (255)
T 2q2v_A 144 ------------------------GSTGKAAYVAAKHGVVGLTKVVGLET-ATSNVTCNAICPGWVLTPLVQKQIDDRAA 198 (255)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEESSBCCHHHHHHHHHHHH
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcCcchhhhcccccc
Confidence 44667899999999999999999999 77899999999999999864321100000
Q ss_pred h---h----cch-hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 L---L----FPP-FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~---~----~~~-~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. . ... ....+..++.+|+|+|+.+++|+++++..++|+.+..||..
T Consensus 199 ~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 252 (255)
T 2q2v_A 199 NGGDPLQAQHDLLAEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGAAWNVDGGW 252 (255)
T ss_dssp HTCCHHHHHHHHHTTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred cccchHHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCCEEEECCCc
Confidence 0 0 011 11234456889999999999999988778999999999863
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-38 Score=292.26 Aligned_cols=246 Identities=16% Similarity=0.125 Sum_probs=199.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++|++|||||++|||++++++|+++|+ +|+++ .|+.+.++...+.+...+.++.++.+|+++.++++++++++.+.+
T Consensus 24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999996 77665 888888888777777667889999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC-CCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD-YPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~-~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.|.+.. ...++||++||..+..+
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~--------- 173 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILG--------- 173 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHC---------
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccC---------
Confidence 99999999999976545677889999999999999999999999999998731 12489999999887641
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
..+++..|+.||+|++.|++.+++|+ .+.||+|++|+||+|+|++......+
T Consensus 174 -------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~-- 225 (272)
T 4e3z_A 174 -------------------------SATQYVDYAASKAAIDTFTIGLAREV-AAEGIRVNAVRPGIIETDLHASGGLP-- 225 (272)
T ss_dssp -------------------------CTTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC------------
T ss_pred -------------------------CCCCcchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCCcCCcccccCCh--
Confidence 12356789999999999999999999 77899999999999999865432211
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..........+..++.+|+|+|+++++|+++....++|+++.+||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~~i~vdgG 271 (272)
T 4e3z_A 226 DRAREMAPSVPMQRAGMPEEVADAILYLLSPSASYVTGSILNVSGG 271 (272)
T ss_dssp --------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred HHHHHHhhcCCcCCCcCHHHHHHHHHHHhCCccccccCCEEeecCC
Confidence 1112222334456678899999999999998888899999999985
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=288.22 Aligned_cols=242 Identities=18% Similarity=0.168 Sum_probs=203.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 78 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---GERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---CTTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 9999999988777776666 4578999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ ++||++||..+..
T Consensus 79 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~---g~iv~isS~~~~~----------- 143 (253)
T 1hxh_A 79 GTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG---GSIINMASVSSWL----------- 143 (253)
T ss_dssp CSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC---EEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC---CEEEEEcchhhcC-----------
Confidence 999999999998744 3566789999999999999999999999999998764 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccC--CcEEEEecCCcccCCcccccchh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEET--GIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~--gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
+.++...|+.||++++.|++.++.|+ .+. ||++|+|+||++.|++.......
T Consensus 144 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 198 (253)
T 1hxh_A 144 ------------------------PIEQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQASLPKG 198 (253)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHHHSCTT
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCCCeEEEEEEeCCccCchhhhccchh
Confidence 45677899999999999999999998 666 99999999999999864321110
Q ss_pred hhhh-hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... +.......+..++.+|+|+|+.+++|+++++..++|+++.+||..
T Consensus 199 ~~~~~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 248 (253)
T 1hxh_A 199 VSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp CCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred hhHHHHhhhhccCccCCCCCHHHHHHHHHHHcCccccCCCCcEEEECCCc
Confidence 0000 100000224456789999999999999988888999999999864
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=288.28 Aligned_cols=247 Identities=15% Similarity=0.135 Sum_probs=199.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++.+|++|||||++|||++++++|+++|+ +|++++|+ ....+...+.+...+.++.++++|+++.++++++++++.+.
T Consensus 4 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 82 (264)
T 3i4f_A 4 GRFVRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSH 82 (264)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred ccccCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 46689999999999999999999999995 88887665 44455555666655678999999999999999999999999
Q ss_pred CCCccEEEEccccc-CCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVY-LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~-~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.. .....+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||.....
T Consensus 83 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~iss~~~~~--------- 151 (264)
T 3i4f_A 83 FGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN--FGRIINYGFQGADS--------- 151 (264)
T ss_dssp HSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTTGGG---------
T ss_pred hCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC--CCeEEEEeechhcc---------
Confidence 99999999999953 2234566789999999999999999999999999998775 38999999984321
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
..+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||++.|++........
T Consensus 152 ------------------------~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~ 206 (264)
T 3i4f_A 152 ------------------------APGWIYRSAFAAAKVGLVSLTKTVAYEE-AEYGITANMVCPGDIIGEMKEATIQEA 206 (264)
T ss_dssp ------------------------CCCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCGGGGSCCHHHH
T ss_pred ------------------------cCCCCCCchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEccCCccCccchhccHHH
Confidence 0245677899999999999999999999 778999999999999998654432211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
. .......+.+++.+|+|+|+.+++|+++....++|+.+.+||+..
T Consensus 207 ~---~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~itG~~i~vdGG~~ 252 (264)
T 3i4f_A 207 R---QLKEHNTPIGRSGTGEDIARTISFLCEDDSDMITGTIIEVTGAVD 252 (264)
T ss_dssp H---HC--------CCCCHHHHHHHHHHHHSGGGTTCCSCEEEESCSCC
T ss_pred H---HHHhhcCCCCCCcCHHHHHHHHHHHcCcccCCCCCcEEEEcCcee
Confidence 1 112233455678899999999999999988889999999999864
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-39 Score=291.65 Aligned_cols=238 Identities=18% Similarity=0.186 Sum_probs=188.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.++. .+.+ +.++.++++|+++.++++++++.+.+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~- 76 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGEDV---VADL---GDRARFAAADVTDEAAVASALDLAET- 76 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHHH---HHHT---CTTEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHHH---HHhc---CCceEEEECCCCCHHHHHHHHHHHHH-
Confidence 578999999999999999999999999995 999999865332 2222 46789999999999999999998877
Q ss_pred CCCccEEEEcccccCCCC---CCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC------CCCCeEEEEecCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTA---KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD------YPSKRLIIVGSITGNTN 191 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~------~~~g~iv~vsS~~~~~~ 191 (358)
++++|+||||||...... ...+.+.++|++.+++|+.+++.++++++|+|.+.. ...|+||++||..+..
T Consensus 77 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~- 155 (257)
T 3tl3_A 77 MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD- 155 (257)
T ss_dssp HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C-
T ss_pred hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC-
Confidence 899999999999863211 122468999999999999999999999999998721 1248999999998874
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.++...|+.||+|+++|++.++.|+ ++.||+||+|+||+|+|++
T Consensus 156 ----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~ 200 (257)
T 3tl3_A 156 ----------------------------------GQIGQAAYSASKGGVVGMTLPIARDL-ASHRIRVMTIAPGLFDTPL 200 (257)
T ss_dssp ----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTT
T ss_pred ----------------------------------CCCCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEecCccChh
Confidence 55788899999999999999999999 7789999999999999986
Q ss_pred ccccchhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 272 LFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
....... .........+. .++.+|+|+|+.++||+++ ..++|+.+.+||+.
T Consensus 201 ~~~~~~~---~~~~~~~~~~~~~r~~~p~dva~~v~~l~s~--~~itG~~i~vdGG~ 252 (257)
T 3tl3_A 201 LASLPEE---ARASLGKQVPHPSRLGNPDEYGALAVHIIEN--PMLNGEVIRLDGAI 252 (257)
T ss_dssp C---CHH---HHHHHHHTSSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred hhhccHH---HHHHHHhcCCCCCCccCHHHHHHHHHHHhcC--CCCCCCEEEECCCc
Confidence 5432111 11112223333 6788999999999999987 47899999999975
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=299.66 Aligned_cols=235 Identities=20% Similarity=0.196 Sum_probs=199.3
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-------HHHHHHHhcCCCCceEEEEecCCCHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-------AERAAKSAGMAKENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-------~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~ 112 (358)
..+|+||++|||||++|||++++++|+++|+ +|++++|+.+. ++...+++...+.++.++++|+++.+++++
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~ 118 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISA 118 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 3579999999999999999999999999995 99999998653 455666666667789999999999999999
Q ss_pred HHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 113 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 113 ~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
+++++.+.++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++ .++||++||..+....
T Consensus 119 ~~~~~~~~~g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~g~IV~iSS~~~~~~~ 195 (346)
T 3kvo_A 119 AVEKAIKKFGGIDILVNNASAISL-TNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSK--VAHILNISPPLNLNPV 195 (346)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCS--SCEEEEECCCCCCCGG
T ss_pred HHHHHHHHcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CCEEEEECCHHHcCCC
Confidence 999999999999999999998754 4667889999999999999999999999999998875 4899999999876310
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc-ccCCc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC-IATTG 271 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~-v~t~~ 271 (358)
+.++...|+.||+++++|++.++.|+ . .||+||+|+||+ ++|++
T Consensus 196 ---------------------------------~~~~~~~Y~aSKaal~~l~~~la~e~-~-~gIrvn~v~PG~~i~T~~ 240 (346)
T 3kvo_A 196 ---------------------------------WFKQHCAYTIAKYGMSMYVLGMAEEF-K-GEIAVNALWPKTAIHTAA 240 (346)
T ss_dssp ---------------------------------GTSSSHHHHHHHHHHHHHHHHHHHHT-T-TTCEEEEEECSBCBCCHH
T ss_pred ---------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEEeCCCccccHH
Confidence 14677899999999999999999999 5 899999999995 88864
Q ss_pred ccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 272 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
... . . ...+..++.+|+|+|+++++|+++ +..++|+++ +|+.
T Consensus 241 ~~~-~-------~---~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i-vdgg 282 (346)
T 3kvo_A 241 MDM-L-------G---GPGIESQCRKVDIIADAAYSIFQK-PKSFTGNFV-IDEN 282 (346)
T ss_dssp HHH-H-------C---C--CGGGCBCTHHHHHHHHHHHTS-CTTCCSCEE-EHHH
T ss_pred HHh-h-------c---cccccccCCCHHHHHHHHHHHHhc-CCCCCceEE-ECCc
Confidence 321 0 0 011235678999999999999999 778999999 5554
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=291.16 Aligned_cols=242 Identities=17% Similarity=0.096 Sum_probs=196.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCC-CCceEEEEecCCCH----HHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYTIMHLDLASL----DSVRQFVD 115 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~----~~i~~~~~ 115 (358)
++++|++|||||++|||++++++|+++|+ +|++++| +.+.++...+++... +.++.++.+|+++. ++++++++
T Consensus 8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 86 (276)
T 1mxh_A 8 ASECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIID 86 (276)
T ss_dssp ---CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHH
Confidence 57899999999999999999999999995 9999999 887777777776543 56789999999999 99999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCH-----------HhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CCCeE
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTA-----------EGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRL 180 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~g~i 180 (358)
++.+.++++|+||||||.... ..+.+.+. +.|++.+++|+.+++.++++++|+|. ++. .+++|
T Consensus 87 ~~~~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~~g~i 164 (276)
T 1mxh_A 87 CSFRAFGRCDVLVNNASAYYP-TPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSRNLSV 164 (276)
T ss_dssp HHHHHHSCCCEEEECCCCCCC-CCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CCCEEE
T ss_pred HHHHhcCCCCEEEECCCCCCC-CCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCCCcEE
Confidence 999999999999999998754 35556777 99999999999999999999999987 321 12799
Q ss_pred EEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEE
Q 018331 181 IIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFA 260 (358)
Q Consensus 181 v~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~ 260 (358)
|++||..+.. +.++...|+.||++++.|++.++.|+ .+.||+||
T Consensus 165 v~isS~~~~~-----------------------------------~~~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~ 208 (276)
T 1mxh_A 165 VNLCDAMTDL-----------------------------------PLPGFCVYTMAKHALGGLTRAAALEL-APRHIRVN 208 (276)
T ss_dssp EEECCGGGGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEE
T ss_pred EEECchhhcC-----------------------------------CCCCCeehHHHHHHHHHHHHHHHHHH-hhcCeEEE
Confidence 9999998874 45678899999999999999999999 77899999
Q ss_pred EecCCcccCCcccccchhhhhhhcchhHHhhhcC-ccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 261 SLYPGCIATTGLFREHIPLFRLLFPPFQKYITKG-YVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 261 ~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+|+||++.|+ . ...+. .........+..+ +.+|+|+|+.+++|+++....++|+++..||+.
T Consensus 209 ~v~PG~v~t~-~--~~~~~--~~~~~~~~~p~~r~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 271 (276)
T 1mxh_A 209 AVAPGLSLLP-P--AMPQE--TQEEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 271 (276)
T ss_dssp EEEESSBSCC-S--SSCHH--HHHHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred EEecCcccCC-c--cCCHH--HHHHHHhcCCCCCCCCCHHHHHHHHHHHhCccccCccCcEEEECCch
Confidence 9999999998 2 11111 0011111234455 789999999999999988778999999999864
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=288.52 Aligned_cols=245 Identities=17% Similarity=0.147 Sum_probs=202.6
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHH-HHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~-~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.++++|++|||||+ +|||++++++|+++|+ +|++++|+.... +...+++.. .+.++.++++|+++.+++++++++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 94 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGA-AVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKD 94 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSC-EEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHH
Confidence 57899999999999 9999999999999995 888888875433 444444432 367899999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||..... .+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..+.
T Consensus 95 ~~~~~g~id~li~nAg~~~~~-~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~---- 167 (267)
T 3gdg_A 95 VVADFGQIDAFIANAGATADS-GILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERG--TGSLVITASMSGHIAN---- 167 (267)
T ss_dssp HHHHTSCCSEEEECCCCCCCS-CTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTSCC----
T ss_pred HHHHcCCCCEEEECCCcCCCC-CcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcC--CceEEEEccccccccC----
Confidence 999999999999999987553 567889999999999999999999999999998765 3899999998876411
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
..++...|+.||++++.|++.+++|+ .+. |+||+|+||+++|++.....
T Consensus 168 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~v~~v~PG~v~t~~~~~~~ 216 (267)
T 3gdg_A 168 -----------------------------FPQEQTSYNVAKAGCIHMARSLANEW-RDF-ARVNSISPGYIDTGLSDFVP 216 (267)
T ss_dssp -----------------------------SSSCCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEEECCEECSCGGGSC
T ss_pred -----------------------------CCCCCCcchHHHHHHHHHHHHHHHHh-ccC-cEEEEEECCccccchhhhCC
Confidence 11367789999999999999999999 555 99999999999998653221
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 217 ~~~---~~~~~~~~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG~ 264 (267)
T 3gdg_A 217 KET---QQLWHSMIPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGGY 264 (267)
T ss_dssp HHH---HHHHHTTSTTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred HHH---HHHHHhcCCCCCCcCHHHHHhHhheeecCccccccCCEEEECCce
Confidence 111 111122345567889999999999999998888999999999864
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=287.65 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=194.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS- 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~- 120 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++++|+++.++++++++++.+.
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQ 80 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999995 9999999988887777777555668899999999999999999999876
Q ss_pred CCCccEEEEccc--cc----CCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 121 GRPLDVLVCNAA--VY----LPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 121 ~~~iD~lv~~ag--~~----~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
++++|+|||||| .. .....+.+.+.+.|++.+++|+.+++.++++++|.|.+++ .|+||++||..+..
T Consensus 81 ~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~---- 154 (260)
T 2qq5_A 81 QGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAG--QGLIVVISSPGSLQ---- 154 (260)
T ss_dssp TTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGT--CCEEEEECCGGGTS----
T ss_pred CCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcC--CcEEEEEcChhhcC----
Confidence 899999999995 32 1223566778899999999999999999999999998764 48999999988763
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+ .+...|+.||++++.|++.++.|+ ++.||+||+|+||+++|++...
T Consensus 155 -------------------------------~-~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (260)
T 2qq5_A 155 -------------------------------Y-MFNVPYGVGKAACDKLAADCAHEL-RRHGVSCVSLWPGIVQTELLKE 201 (260)
T ss_dssp -------------------------------C-CSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCCSCTTTC--
T ss_pred -------------------------------C-CCCCchHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCccccHHHHH
Confidence 1 234689999999999999999999 7789999999999999986533
Q ss_pred cchhhhhhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCC-CCCceeeecCC
Q 018331 275 EHIPLFRLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNK 325 (358)
Q Consensus 275 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~-~~~G~~~~~d~ 325 (358)
.............. ..+..+..+|+|+|+.++||+++++. ++||+++..|+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~pe~va~~v~~l~s~~~~~~itG~~i~~~~ 255 (260)
T 2qq5_A 202 HMAKEEVLQDPVLKQFKSAFSSAETTELSGKCVVALATDPNILSLSGKVLPSCD 255 (260)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHTCTTGGGGTTCEEEHHH
T ss_pred hhccccccchhHHHHHHhhhccCCCHHHHHHHHHHHhcCcccccccceeechhh
Confidence 21110000000000 11223346899999999999998764 68999998764
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-38 Score=285.57 Aligned_cols=240 Identities=19% Similarity=0.198 Sum_probs=199.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+. +...+++. + .++++|+++.++++++++++.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-~~~~~~~~----~-~~~~~D~~~~~~~~~~~~~~~~~~ 75 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEG-KEVAEAIG----G-AFFQVDLEDERERVRFVEEAAYAL 75 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTH-HHHHHHHT----C-EEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhH-HHHHHHhh----C-CEEEeeCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999766 55555553 4 789999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 76 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~----------- 141 (256)
T 2d1y_A 76 GRVDVLVNNAAIAAP-GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLF----------- 141 (256)
T ss_dssp SCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEccccccC-----------
Confidence 999999999998754 3566789999999999999999999999999998765 48999999998764
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--hh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~~ 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++...... ..
T Consensus 142 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 196 (256)
T 2d1y_A 142 ------------------------AEQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPD 196 (256)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC----
T ss_pred ------------------------CCCCChhHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCccCchhhhccccccC
Confidence 44567899999999999999999999 7789999999999999985422100 00
Q ss_pred hhhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... .....+.+++.+|+|+|+++++|+++++..++|+.+.+||+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~~~~v~gG~ 245 (256)
T 2d1y_A 197 PERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGM 245 (256)
T ss_dssp ----CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred CHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCCEEEECCCc
Confidence 001111 111234456889999999999999988778999999999874
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-39 Score=292.88 Aligned_cols=237 Identities=18% Similarity=0.139 Sum_probs=197.4
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++||++|||||++|||++++++|+++|+ +|++++|+...++ ....+.+|+++.+++.++++++.+
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~~~~~ 90 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIA-----------ADLHLPGDLREAAYADGLPGAVAA 90 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSC-----------CSEECCCCTTSHHHHHHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHH-----------hhhccCcCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999995 9999999854321 224558999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 91 ~~g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 158 (266)
T 3uxy_A 91 GLGRLDIVVNNAGVISR-GRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG--GGAIVNVASCWGLR--------- 158 (266)
T ss_dssp HHSCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTB---------
T ss_pred hcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEECCHHhCC---------
Confidence 99999999999999755 4566889999999999999999999999999998765 48999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||+|+|++........
T Consensus 159 --------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~ 211 (266)
T 3uxy_A 159 --------------------------PGPGHALYCLTKAALASLTQCMGMDH-APQGIRINAVCPNEVNTPMLRTGFAKR 211 (266)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCCHHHHHHHHHT
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCCCcchHhhhhhhcc
Confidence 55678899999999999999999999 778999999999999998653321110
Q ss_pred ----hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ----~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+.+++.+|+|+|++++||+++.+..++|+.+.+||+.
T Consensus 212 ~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 263 (266)
T 3uxy_A 212 GFDPDRAVAELGRTVPLGRIAEPEDIADVVLFLASDAARYLCGSLVEVNGGK 263 (266)
T ss_dssp TCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred cccchHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCE
Confidence 000111222345567889999999999999998888999999999874
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=289.72 Aligned_cols=241 Identities=19% Similarity=0.214 Sum_probs=201.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. ++.++++|+++.++++++++++.+.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~ 80 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 80 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc----CCeEEEcCCCCHHHHHHHHHHHHHHc
Confidence 58899999999999999999999999995 99999999877776666553 47899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|.++. ++||++||..+..
T Consensus 81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~----------- 146 (270)
T 1yde_A 81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGAI----------- 146 (270)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCHHHHH-----------
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC---CEEEEEcCccccC-----------
Confidence 99999999999875444566789999999999999999999999999997653 7999999987763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--h-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--P- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~- 278 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||++.|++...... +
T Consensus 147 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~ 201 (270)
T 1yde_A 147 ------------------------GQAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 201 (270)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred ------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCccccchhhhhhhcccc
Confidence 34567789999999999999999999 7789999999999999985422100 0
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+.+++.+|+|+|+.++||+++ +.+++|+.+..||+.
T Consensus 202 ~~~~~~~~~~~~p~~r~~~p~dva~~v~~L~s~-~~~itG~~i~vdGG~ 249 (270)
T 1yde_A 202 PRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGA 249 (270)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTT
T ss_pred hHHHHHHHhhcCCCCCCcCHHHHHHHHHHHccc-CCCcCCCEEEECCCe
Confidence 000011111233556788999999999999997 667999999999975
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=287.71 Aligned_cols=236 Identities=19% Similarity=0.212 Sum_probs=195.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.+|++|||||++|||++++++|+++|+ +|++++|+.+.++.. ...++.++++|+++.++++++++++.+.+
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 85 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKAL------NLPNTLCAQVDVTDKYTFDTAITRAEKIY 85 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTT------CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHh------hcCCceEEEecCCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999999999995 999999997655432 12378899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .|+||++||..+..
T Consensus 86 g~iD~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~--~g~IV~isS~~~~~----------- 151 (266)
T 3p19_A 86 GPADAIVNNAGMMLL-GQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN--CGTIINISSIAGKK----------- 151 (266)
T ss_dssp CSEEEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhCC-----------
Confidence 999999999998754 4667889999999999999999999999999998765 38999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ ++.||+||+|+||+|+|++..........
T Consensus 152 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~ 206 (266)
T 3p19_A 152 ------------------------TFPDHAAYCGTKFAVHAISENVREEV-AASNVRVMTIAPSAVKTELLSHTTSQQIK 206 (266)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCSCHHHH
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCccccchhhcccchhhh
Confidence 55678899999999999999999999 77899999999999999865432211111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
... .....+.+++.+|+|+|++++||++.+.....+.+....
T Consensus 207 ~~~-~~~~~~~~r~~~pedvA~av~~l~~~~~~~~~~~i~i~p 248 (266)
T 3p19_A 207 DGY-DAWRVDMGGVLAADDVARAVLFAYQQPQNVCIREIALAP 248 (266)
T ss_dssp HHH-HHHHHHTTCCBCHHHHHHHHHHHHHSCTTEEEEEEEEEE
T ss_pred HHH-HhhcccccCCCCHHHHHHHHHHHHcCCCCccceeeEEec
Confidence 100 011235567899999999999999998776666665443
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=284.88 Aligned_cols=245 Identities=19% Similarity=0.179 Sum_probs=203.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++++|+++.++++++++++.+.
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~d~~~v~~~~~~~~~~ 83 (263)
T 3ak4_A 8 FDLSGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLE---NGGFAVEVDVTKRASVDAAMQKAIDA 83 (263)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCT---TCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh---cCCeEEEEeCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999999999995 99999999877776665553 26788999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++. .++||++||..+..
T Consensus 84 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~-~g~iv~isS~~~~~---------- 151 (263)
T 3ak4_A 84 LGGFDLLCANAGVSTM-RPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNT-KGVIVNTASLAAKV---------- 151 (263)
T ss_dssp HTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-CeEEEEeccccccc----------
Confidence 9999999999998744 35567889999999999999999999999999987641 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-- 278 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.......
T Consensus 152 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 205 (263)
T 3ak4_A 152 -------------------------GAPLLAHYSASKFAVFGWTQALAREM-APKNIRVNCVCPGFVKTAMQEREIIWEA 205 (263)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBTTHHHHHHHHHHH
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHH-hHcCeEEEEEecccccChhhhhhccccc
Confidence 44567899999999999999999999 77899999999999999854321100
Q ss_pred -h-----hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -L-----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~-----~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ...........+..++.+|+|+|+++++|+++++..++|+.+..||+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~~~~vdgG~ 260 (263)
T 3ak4_A 206 ELRGMTPEAVRAEYVSLTPLGRIEEPEDVADVVVFLASDAARFMTGQGINVTGGV 260 (263)
T ss_dssp HHHTSCHHHHHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred cccccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECcCE
Confidence 0 000011112234567889999999999999988778999999999863
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=287.43 Aligned_cols=242 Identities=19% Similarity=0.165 Sum_probs=203.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++|++|||||++|||++++++|+++|+ .|++ .+|+.+.++...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 5 l~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 5 LKGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999996 7766 5777777788777777777889999999999999999999887765
Q ss_pred ------CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 122 ------RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 122 ------~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
+++|+||||||.... ..+.+.+.+.|++++++|+.+++.++++++|+|.+. ++||++||..+..
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----~~iv~isS~~~~~----- 153 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPG-AFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN----SRIINISSAATRI----- 153 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE----EEEEEECCGGGTS-----
T ss_pred cccccCCcccEEEECCCCCCC-CChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC----CEEEEeCChhhcc-----
Confidence 359999999998644 456678999999999999999999999999998543 7999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++....
T Consensus 154 ------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~ 202 (255)
T 3icc_A 154 ------------------------------SLPDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFVKTDMNAEL 202 (255)
T ss_dssp ------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCSSSTTT
T ss_pred ------------------------------CCCCcchhHHhHHHHHHHHHHHHHHH-HhcCeEEEEEEEeeecccchhhh
Confidence 55778899999999999999999999 77899999999999999865442
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ...........+.+++.+|+|+|+.++||+++.+..++|+.+.+||+.
T Consensus 203 ~~~-~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~i~vdgG~ 253 (255)
T 3icc_A 203 LSD-PMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGS 253 (255)
T ss_dssp TTS-HHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSST
T ss_pred ccc-HHHHHhhhccCCcCCCCCHHHHHHHHHHHhCcccCCccCCEEEecCCe
Confidence 211 001111112234466889999999999999998888999999999864
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-38 Score=287.27 Aligned_cols=237 Identities=20% Similarity=0.258 Sum_probs=189.9
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
|....++++|++|||||++|||++++++|+++|+ +|++++|+.+.+ ..+.++++|+++.+++++++++
T Consensus 13 ~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~-----------~~~~~~~~Dl~d~~~v~~~~~~ 80 (253)
T 2nm0_A 13 GLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPP-----------EGFLAVKCDITDTEQVEQAYKE 80 (253)
T ss_dssp -------CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCC-----------TTSEEEECCTTSHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhh-----------ccceEEEecCCCHHHHHHHHHH
Confidence 3444578999999999999999999999999995 999999985432 1378899999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 81 ~~~~~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~------ 151 (253)
T 2nm0_A 81 IEETHGPVEVLIANAGVTKD-QLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAK--KGRVVLISSVVGLL------ 151 (253)
T ss_dssp HHHHTCSCSEEEEECSCCTT-TC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCCCCCC------
T ss_pred HHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCC------
Confidence 99999999999999998744 3566778899999999999999999999999998754 38999999998773
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... .
T Consensus 152 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~-~ 200 (253)
T 2nm0_A 152 -----------------------------GSAGQANYAASKAGLVGFARSLAREL-GSRNITFNVVAPGFVDTDMTKV-L 200 (253)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-CSSSEEEEEEEECSBCC-------
T ss_pred -----------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhh-c
Confidence 44678899999999999999999999 7889999999999999986432 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... .........+..++.+|+|+|+.+++|+++++..++|+++.+||+.
T Consensus 201 ~~~--~~~~~~~~~p~~~~~~p~dvA~~i~~l~s~~~~~~tG~~i~vdGG~ 249 (253)
T 2nm0_A 201 TDE--QRANIVSQVPLGRYARPEEIAATVRFLASDDASYITGAVIPVDGGL 249 (253)
T ss_dssp -----CHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred CHH--HHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCcCcEEEECCcc
Confidence 110 0001111234456889999999999999988888999999999864
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-37 Score=283.26 Aligned_cols=236 Identities=19% Similarity=0.230 Sum_probs=202.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++++|+++.++++++++++.+.+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~~ 79 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 79 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhh---cCceEEEecCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999995 99999999887777666654 258889999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 80 g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 145 (260)
T 1nff_A 80 GGLHVLVNNAGILNI-GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLA----------- 145 (260)
T ss_dssp SCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEeehhhcC-----------
Confidence 999999999998754 3566789999999999999999999999999998764 38999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.|++.++.|+ .+.||++|+|+||++.|++.. ... .
T Consensus 146 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~--~~~--~ 196 (260)
T 1nff_A 146 ------------------------GTVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTD--WVP--E 196 (260)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGT--TSC--T
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCCCCccc--cch--h
Confidence 44567899999999999999999999 778999999999999998642 111 0
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
... ..+..++.+|+|+|+.+++|+++....++|+.+..||+..
T Consensus 197 ~~~----~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~~~~v~gG~~ 239 (260)
T 1nff_A 197 DIF----QTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGTV 239 (260)
T ss_dssp TCS----CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred hHH----hCccCCCCCHHHHHHHHHHHhCccccCCcCCEEEECCCee
Confidence 000 2234567899999999999999887789999999999754
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=286.06 Aligned_cols=243 Identities=19% Similarity=0.184 Sum_probs=200.7
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++++|+++.++++++++++ +
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~v~~~~~~~-~ 99 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADEL---GNRAEFVSTNVTSEDSVLAAIEAA-N 99 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHH-T
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHH-H
Confidence 4579999999999999999999999999995 9999999998888877776 467999999999999999999999 7
Q ss_pred cCCCccEEEEcccccCCCCCC-----CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC----CCCCeEEEEecCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKE-----PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNT 190 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~-----~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~----~~~g~iv~vsS~~~~~ 190 (358)
.++++|+||||++.......+ .+.+.++|++.+++|+.+++.+++++++.+.+.. ...|+||++||..+..
T Consensus 100 ~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 100 QLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp TSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred HhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 788999999995443322222 3578899999999999999999999999998621 1248999999999874
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+.++...|+.||+|+++|++.++.|+ .+.||+|++|+||+|+|+
T Consensus 180 -----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~ 223 (281)
T 3ppi_A 180 -----------------------------------GQIGQTAYAAAKAGVIGLTIAAARDL-SSAGIRVNTIAPGTMKTP 223 (281)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCH
T ss_pred -----------------------------------CCCCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCCch
Confidence 55678899999999999999999999 778999999999999998
Q ss_pred cccccchhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 271 GLFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+....... .........+. +++.+|+|+|+++++|+++ ..++|+.+.+||+..
T Consensus 224 ~~~~~~~~---~~~~~~~~~~~~~~~~~pedvA~~v~~l~s~--~~~tG~~i~vdGG~~ 277 (281)
T 3ppi_A 224 IMESVGEE---ALAKFAANIPFPKRLGTPDEFADAAAFLLTN--GYINGEVMRLDGAQR 277 (281)
T ss_dssp HHHTTCHH---HHHHHHHTCCSSSSCBCHHHHHHHHHHHHHC--SSCCSCEEEESTTCC
T ss_pred hhhcccHH---HHHHHHhcCCCCCCCCCHHHHHHHHHHHHcC--CCcCCcEEEECCCcc
Confidence 55332111 11112222233 5678999999999999986 368999999999753
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=281.85 Aligned_cols=236 Identities=18% Similarity=0.156 Sum_probs=186.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+. ... .+.++.+|+++.++++++++++.+.
T Consensus 3 m~l~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~--------~~~--~~~~~~~D~~d~~~~~~~~~~~~~~ 71 (250)
T 2fwm_X 3 MDFSGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ--------EQY--PFATEVMDVADAAQVAQVCQRLLAE 71 (250)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS--------SCC--SSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh--------hcC--CceEEEcCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 99999998641 111 2788999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 72 ~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--~g~iv~isS~~~~~---------- 138 (250)
T 2fwm_X 72 TERLDALVNAAGILRM-GATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR--GGAIVTVASDAAHT---------- 138 (250)
T ss_dssp CSCCCEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC--CCEEEEECchhhCC----------
Confidence 9999999999998754 3566789999999999999999999999999998764 38999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 139 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~- 191 (250)
T 2fwm_X 139 -------------------------PRIGMSAYGASKAALKSLALSVGLEL-AGSGVRCNVVSPGSTDTDMQRTLWVSD- 191 (250)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC-------------
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-CccCCEEEEEECCcccCccccccccCh-
Confidence 45677899999999999999999999 778999999999999998653321110
Q ss_pred hhhc-chhH-------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLF-PPFQ-------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~-~~~~-------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... .... ..+..++.+|+|+|+.+++|+++++..++|+.+.+||..
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~ 246 (250)
T 2fwm_X 192 DAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDIVVDGGS 246 (250)
T ss_dssp ------------------------CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred hHHHHHHhhhhhcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 0000 1111 234556789999999999999998888999999999864
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=284.44 Aligned_cols=244 Identities=17% Similarity=0.146 Sum_probs=198.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHh---CCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~---~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+|++|++|||||++|||++++++|++ +|+ +|++++|+.+.++...+++... +.++.++++|+++.+++++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 81 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHH
Confidence 57899999999999999999999999 895 9999999988888777776543 46789999999999999999999
Q ss_pred HHh--cCCCcc--EEEEcccccCC-CCCCCC-CCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 018331 117 FRR--SGRPLD--VLVCNAAVYLP-TAKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190 (358)
Q Consensus 117 ~~~--~~~~iD--~lv~~ag~~~~-~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~ 190 (358)
+.+ .++++| +||||||.... ...+.+ .+.++|++.+++|+.|++.++++++|.|+++....|+||++||..+..
T Consensus 82 ~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 988 678899 99999998643 123445 688999999999999999999999999987511148999999998874
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+.++...|+.||+++++|++.++.|+ . +|+||+|+||+++|+
T Consensus 162 -----------------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~--~i~vn~v~PG~v~T~ 203 (259)
T 1oaa_A 162 -----------------------------------PYKGWGLYCAGKAARDMLYQVLAAEE-P--SVRVLSYAPGPLDND 203 (259)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCSBSSH
T ss_pred -----------------------------------CCCCccHHHHHHHHHHHHHHHHHhhC-C--CceEEEecCCCcCcc
Confidence 45678899999999999999999998 4 399999999999998
Q ss_pred cccccchh--hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 271 GLFREHIP--LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 271 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
+....... ............+..++.+|+|+|+.+++|+++ ..+++|+++.+|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~~~-~~~itG~~i~vdg 259 (259)
T 1oaa_A 204 MQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQK-DTFQSGAHVDFYD 259 (259)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHH-CCSCTTEEEETTC
T ss_pred hHHHHhhccCChhHHHHHHHhhhcCCcCCHHHHHHHHHHHHhh-ccccCCcEEeccC
Confidence 54321100 000011112233456789999999999999985 5679999999885
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=289.50 Aligned_cols=276 Identities=14% Similarity=0.166 Sum_probs=213.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++... +.++.++++|+++.++++++++++.+
T Consensus 22 ~~l~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999988877776666443 56799999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... .++.+.+.++|++.+++|+.+++.+++++++.+.+... .++||++||..+..
T Consensus 101 ~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~~--------- 169 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAET--------- 169 (302)
T ss_dssp HTCSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHHH---------
T ss_pred HcCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CCEEEEEccccccc---------
Confidence 99999999999998643 34557789999999999999999999999999974321 47999999987763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||++.|+++.....+.
T Consensus 170 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 222 (302)
T 1w6u_A 170 --------------------------GSGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 222 (302)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred --------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeccCCCcchhhhcccc
Confidence 34567889999999999999999999 778999999999999998543322111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccchhccCHHHHHHHHHHHHHHhcC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKVWEISEKLVGL 357 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 357 (358)
...........+..++.+|+|+|+++++++++....++|+.+..|++........ .....+.....|+.++++++.
T Consensus 223 ~~~~~~~~~~~p~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~~~~~~~~--~~~~~~~~g~~~~~~~~~~~~ 298 (302)
T 1w6u_A 223 GTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGEEVLISGE--FNDLRKVTKEQWDTIEELIRK 298 (302)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTHHHHHHST--TGGGGGCCHHHHHHHTTC---
T ss_pred hhhHHHHHhcCCcCCCCCHHHHHHHHHHHcCCcccccCCCEEEECCCeeeccCCc--cccchhhccccccChhhhccC
Confidence 0000111122344567899999999999999877778999999998753221111 111223345679988887764
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=281.55 Aligned_cols=241 Identities=23% Similarity=0.274 Sum_probs=188.3
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
|..+.++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++.+|+++.+++.+++++
T Consensus 6 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~ 81 (249)
T 3f9i_A 6 HHHMIDLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALK---DNYTIEVCNLANKEECSNLISK 81 (249)
T ss_dssp ---CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---SSEEEEECCTTSHHHHHHHHHT
T ss_pred ccccccCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhc---cCccEEEcCCCCHHHHHHHHHh
Confidence 4445678999999999999999999999999995 99999999988887777764 4788999999999998887764
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 82 ----~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~------ 148 (249)
T 3f9i_A 82 ----TSNLDILVCNAGITSD-TLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKR--YGRIINISSIVGIA------ 148 (249)
T ss_dssp ----CSCCSEEEECCC--------------CHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCCCC--------
T ss_pred ----cCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcEEEEEccHHhcc------
Confidence 4689999999998754 3455678899999999999999999999999998765 38999999998874
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+|++|+||++.|++.....
T Consensus 149 -----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~ 198 (249)
T 3f9i_A 149 -----------------------------GNPGQANYCASKAGLIGMTKSLSYEV-ATRGITVNAVAPGFIKSDMTDKLN 198 (249)
T ss_dssp -----------------------------CCSCSHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBC------CC
T ss_pred -----------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCccccCcccccC
Confidence 45678899999999999999999999 778999999999999998654321
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. .........+..++.+|+|+|+++++|+++.+..++|+.+..||+.
T Consensus 199 ~~---~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~tG~~~~vdgG~ 246 (249)
T 3f9i_A 199 EK---QREAIVQKIPLGTYGIPEDVAYAVAFLASNNASYITGQTLHVNGGM 246 (249)
T ss_dssp HH---HHHHHHHHCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HH---HHHHHHhcCCCCCCcCHHHHHHHHHHHcCCccCCccCcEEEECCCE
Confidence 11 1112233445567889999999999999998888999999999864
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-38 Score=286.30 Aligned_cols=243 Identities=12% Similarity=0.098 Sum_probs=197.5
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||+ +|||++++++|+++|+ +|++++|+.+ .+...+++......+.++.+|+++.++++++++++.+
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 82 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKE 82 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence 5789999999999 9999999999999995 9999999874 2223333322212478999999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
.++++|+||||||.... ..++.+.+.++|++.+++|+.+++.++++++|.|++ +|+||++||..+..
T Consensus 83 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~------ 152 (261)
T 2wyu_A 83 AFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE----GGGIVTLTYYASEK------ 152 (261)
T ss_dssp HHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE----EEEEEEEECGGGTS------
T ss_pred HcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc----CCEEEEEecccccC------
Confidence 99999999999998642 134557789999999999999999999999999875 27999999988763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... .
T Consensus 153 -----------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~ 201 (261)
T 2wyu_A 153 -----------------------------VVPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARS-I 201 (261)
T ss_dssp -----------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCTGGGG-C
T ss_pred -----------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCCCcCchhhh-c
Confidence 44567789999999999999999999 7789999999999999986432 1
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..............+..++.+|+|+|+.+++|+++.+..++|+.+.+||..
T Consensus 202 ~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 252 (261)
T 2wyu_A 202 PGFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (261)
T ss_dssp TTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcChhhcCCCCCEEEECCCc
Confidence 111111111222345566889999999999999988778999999999874
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-38 Score=286.26 Aligned_cols=243 Identities=13% Similarity=0.128 Sum_probs=196.2
Q ss_pred cCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|++|||||+ +|||++++++|+++|+ +|++++|+. ..+...+++........++++|+++.++++++++++.+
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~ 83 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGK 83 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHH
Confidence 3789999999999 9999999999999995 999999987 33333333322222347899999999999999999999
Q ss_pred cCCCccEEEEcccccCC---CCCCCC-CCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 120 SGRPLDVLVCNAAVYLP---TAKEPT-FTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~---~~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.++++|+||||||.... ..++.+ .+.++|++.+++|+.+++.++++++|+|.+ +|+||++||..+..
T Consensus 84 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~----~g~iv~isS~~~~~----- 154 (265)
T 1qsg_A 84 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP----GSALLTLSYLGAER----- 154 (265)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE----EEEEEEEECGGGTS-----
T ss_pred HcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc----CCEEEEEcchhhcc-----
Confidence 99999999999998642 123445 788999999999999999999999999875 27999999988763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||++++.|++.++.++ .+.||+||+|+||+++|++...
T Consensus 155 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~- 202 (265)
T 1qsg_A 155 ------------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASG- 202 (265)
T ss_dssp ------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGG-
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCccchhhc-
Confidence 44567789999999999999999999 7789999999999999986432
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...............+..++.+|+|+|+.+++|+++....++|+.+.+|+..
T Consensus 203 ~~~~~~~~~~~~~~~p~~~~~~~~dva~~v~~l~s~~~~~~tG~~~~vdgG~ 254 (265)
T 1qsg_A 203 IKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 254 (265)
T ss_dssp STTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred ccccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECCCc
Confidence 1111111111122234566789999999999999988878999999999874
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=275.94 Aligned_cols=231 Identities=22% Similarity=0.240 Sum_probs=196.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc-CCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. ..+.++.++++|+++.++++++++++.+.++
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 79 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFG 79 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence 478999999999999999999999995 99999999988887777664 3467899999999999999999999999999
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.++. +++|+++|..+..
T Consensus 80 ~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~ii~~sS~~~~~------------ 143 (235)
T 3l77_A 80 DVDVVVANAGLGYF-KRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTG---GLALVTTSDVSAR------------ 143 (235)
T ss_dssp SCSEEEECCCCCCC-CCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSS------------
T ss_pred CCCEEEECCccccc-cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcEEEEecchhcc------------
Confidence 99999999998754 4677889999999999999999999999999996543 7999999988764
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||+++++|++.++.+ .+||+||+|+||+++|++.......
T Consensus 144 -----------------------~~~~~~~Y~~sKaa~~~~~~~l~~~---~~~i~v~~v~PG~v~T~~~~~~~~~---- 193 (235)
T 3l77_A 144 -----------------------LIPYGGGYVSTKWAARALVRTFQIE---NPDVRFFELRPGAVDTYFGGSKPGK---- 193 (235)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEECSBSSSTTTCCSCC----
T ss_pred -----------------------cCCCcchHHHHHHHHHHHHHHHhhc---CCCeEEEEEeCCccccccccccCCc----
Confidence 4456778999999999999999544 5799999999999999865332110
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
....++.+|+|+|+.++||++++....+|+.+..++.+.
T Consensus 194 -------~~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~~~~ 232 (235)
T 3l77_A 194 -------PKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSVYQR 232 (235)
T ss_dssp -------CGGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCTTSC
T ss_pred -------ccccCCCCHHHHHHHHHHHHcCCCCCccceEEEeecccC
Confidence 011256799999999999999999889999998888653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-37 Score=278.53 Aligned_cols=247 Identities=21% Similarity=0.206 Sum_probs=205.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+||||++++++|+++|+ +|++++|+...++...+.+...+.++.++.+|+++.++++++++++.+.
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQ 87 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999988777777777655678999999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 88 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 155 (260)
T 3awd_A 88 EGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQK--QGVIVAIGSMSGLI---------- 155 (260)
T ss_dssp HSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC--CCEEEEEecchhcc----------
Confidence 899999999999875334566788999999999999999999999999998754 38999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchh--hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++. ..|+.||++++.|++.++.++ .+.||++++|+||++.|++.......
T Consensus 156 -------------------------~~~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~ 209 (260)
T 3awd_A 156 -------------------------VNRPQQQAAYNASKAGVHQYIRSLAAEW-APHGIRANAVAPTYIETTLTRFGMEK 209 (260)
T ss_dssp -------------------------CCSSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTHHHHTC
T ss_pred -------------------------cCCCCCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeeeeccchhhcccCC
Confidence 12233 789999999999999999999 77899999999999999865311110
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+..++.+|+|+|+.++++++++....+|+.+.+|++.
T Consensus 210 -~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 257 (260)
T 3awd_A 210 -PELYDAWIAGTPMGRVGQPDEVASVVQFLASDAASLMTGAIVNVDAGF 257 (260)
T ss_dssp -HHHHHHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -hHHHHHHHhcCCcCCCCCHHHHHHHHHHHhCchhccCCCcEEEECCce
Confidence 011111112234456789999999999999987777999999999864
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=285.16 Aligned_cols=241 Identities=12% Similarity=0.064 Sum_probs=197.4
Q ss_pred cCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecChHH-HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~~~-~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|++||||| ++|||++++++|+++|+ +|++++|+..+ ++...+++ +.++.++++|+++.++++++++++.
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRL---PAKAPLLELDVQNEEHLASLAGRVT 79 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTS---SSCCCEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhc---CCCceEEEccCCCHHHHHHHHHHHH
Confidence 478999999999 99999999999999995 99999998754 34443333 3578899999999999999999999
Q ss_pred hcCC---CccEEEEcccccCC----CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 018331 119 RSGR---PLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 191 (358)
Q Consensus 119 ~~~~---~iD~lv~~ag~~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~ 191 (358)
+.++ ++|+||||||.... ...+.+.+.++|++.+++|+.+++.++++++|+|.+. |+||++||..+.
T Consensus 80 ~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~iss~~~~-- 153 (269)
T 2h7i_A 80 EAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPG----GSIVGMDFDPSR-- 153 (269)
T ss_dssp HHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECCCSS--
T ss_pred HHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC----CeEEEEcCcccc--
Confidence 9888 99999999998642 2355678999999999999999999999999999763 799999997653
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.+.+..|+.||++++.|++.++.|+ ++.||+||+|+||+++|++
T Consensus 154 ----------------------------------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~ 198 (269)
T 2h7i_A 154 ----------------------------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLA 198 (269)
T ss_dssp ----------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHH
T ss_pred ----------------------------------ccCchHHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccchh
Confidence 34567899999999999999999999 7789999999999999985
Q ss_pred ccccc----hhh-h---hhhcc-hhHHhhhc-CccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 272 LFREH----IPL-F---RLLFP-PFQKYITK-GYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 272 ~~~~~----~~~-~---~~~~~-~~~~~~~~-~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ... . ..... .....+.+ ++.+|+|+|+.++||+++.+.++||+.+.+||+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG~ 264 (269)
T 2h7i_A 199 MSAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 264 (269)
T ss_dssp HHHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred hhccccccchhhHHHHHHHHHHhhhccCCcccCCCCHHHHHHHHHHHhCchhccCcceEEEecCCe
Confidence 43210 000 0 00111 11233445 5789999999999999998888999999999974
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=284.68 Aligned_cols=232 Identities=16% Similarity=0.141 Sum_probs=195.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.... ...++.++++|+++.++++++++++.+.
T Consensus 24 ~~~~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~---------~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 93 (260)
T 3un1_A 24 MRNQQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPS---------ADPDIHTVAGDISKPETADRIVREGIER 93 (260)
T ss_dssp HHTTCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCC---------SSTTEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred hCcCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhc---------ccCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 568899999999999999999999999995 999999985432 1236899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .++||++||..+...
T Consensus 94 ~g~iD~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~~--------- 161 (260)
T 3un1_A 94 FGRIDSLVNNAGVFLA-KPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG--SGHIVSITTSLVDQP--------- 161 (260)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCTTTTSC---------
T ss_pred CCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEEechhhccC---------
Confidence 9999999999998754 4566789999999999999999999999999998875 489999999876520
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
.+..+...|+.||+|++.|++.++.|+ ++.||+||+|+||+|+|++.......
T Consensus 162 ------------------------~~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~-- 214 (260)
T 3un1_A 162 ------------------------MVGMPSALASLTKGGLNAVTRSLAMEF-SRSGVRVNAVSPGVIKTPMHPAETHS-- 214 (260)
T ss_dssp ------------------------BTTCCCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECCBCCTTSCGGGHH--
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEEeecCCCCCCCCHHHHH--
Confidence 122456789999999999999999999 78899999999999999976432211
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+..++.+|+|+|++++||. .+..++|+.+.+||+.
T Consensus 215 ----~~~~~~p~~r~~~~~dva~av~~L~--~~~~itG~~i~vdGG~ 255 (260)
T 3un1_A 215 ----TLAGLHPVGRMGEIRDVVDAVLYLE--HAGFITGEILHVDGGQ 255 (260)
T ss_dssp ----HHHTTSTTSSCBCHHHHHHHHHHHH--HCTTCCSCEEEESTTG
T ss_pred ----HHhccCCCCCCcCHHHHHHHHHHhc--ccCCCCCcEEEECCCe
Confidence 1122335567889999999999993 3446899999999974
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=281.49 Aligned_cols=236 Identities=18% Similarity=0.198 Sum_probs=197.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||++|||+++++.|+++|+ +|++++|+.+. +.++.++++|+++.++++++++++.+.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 71 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----------EAKYDHIECDVTNPDQVKASIDHIFKE 71 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----------SCSSEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 99999998643 356889999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 72 ~g~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~---------- 138 (264)
T 2dtx_A 72 YGSISVLVNNAGIESY-GKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSR--DPSIVNISSVQASI---------- 138 (264)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSS--SCEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC--CcEEEEECCchhcc----------
Confidence 9999999999998754 3566789999999999999999999999999998765 48999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--- 277 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--- 277 (358)
+.++...|+.||++++.|++.++.|+ .+. |+||+|+||+++|++......
T Consensus 139 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~vn~v~PG~v~t~~~~~~~~~~~ 191 (264)
T 2dtx_A 139 -------------------------ITKNASAYVTSKHAVIGLTKSIALDY-APL-LRCNAVCPATIDTPLVRKAAELEV 191 (264)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSBCSHHHHHHHHHHH
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cCC-cEEEEEEeCCCcCcchhhhhhccc
Confidence 44677899999999999999999999 666 999999999999985432100
Q ss_pred --hh--h-hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 --PL--F-RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 --~~--~-~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.. . ..........+..++.+|+|+|+.+++|+++++..++|+.+.+||...
T Consensus 192 ~~~~~~~~~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~i~vdGG~~ 247 (264)
T 2dtx_A 192 GSDPMRIEKKISEWGHEHPMQRIGKPQEVASAVAFLASREASFITGTCLYVDGGLS 247 (264)
T ss_dssp CSCHHHHHHHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccCchhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEECCCcc
Confidence 00 0 011111122345678899999999999999888789999999999853
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=279.52 Aligned_cols=247 Identities=19% Similarity=0.160 Sum_probs=204.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||+||||++++++|+++|+ +|++++| +.+.++...+++...+.++.++.+|+++.+++.++++++.+
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 81 (261)
T 1gee_A 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 9999999 77777777666655566789999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++. .++||++||..+..
T Consensus 82 ~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~isS~~~~~--------- 150 (261)
T 1gee_A 82 EFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKI--------- 150 (261)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS---------
T ss_pred HcCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-CCEEEEeCCHHhcC---------
Confidence 89999999999998744 34557789999999999999999999999999987541 37999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++.......
T Consensus 151 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~- 202 (261)
T 1gee_A 151 --------------------------PWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFAD- 202 (261)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHHHS-
T ss_pred --------------------------CCCCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCcCCchhhhcccC-
Confidence 45677899999999999999999999 77799999999999999864321100
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........+..++.+|+|+|+.+++|+++....++|+++..||..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (261)
T 1gee_A 203 PEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGM 250 (261)
T ss_dssp HHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCcEEEEcCCc
Confidence 000011111223456789999999999999987777999999999875
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=280.56 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=187.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+||||++++++|+++|+ .|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 88 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSM 88 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999999999995 9999999988887777777655668899999999999999999999888
Q ss_pred C-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 G-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+ +++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 89 ~~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 156 (266)
T 1xq1_A 89 FGGKLDILINNLGAIRS-KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV--------- 156 (266)
T ss_dssp HTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC---------------
T ss_pred hCCCCcEEEECCCCCCC-CChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEccchhcc---------
Confidence 7 899999999998644 3556788999999999999999999999999998764 37999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.|++.+++++ .+.||++++|+||++.|++......+
T Consensus 157 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~- 208 (266)
T 1xq1_A 157 --------------------------SASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDD- 208 (266)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC-----------
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEeeCCCccchhhhhcCH-
Confidence 34566789999999999999999999 77799999999999999865432111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+|+|+.+++|++++...++|+.+..|++.
T Consensus 209 -~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 255 (266)
T 1xq1_A 209 -EFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 255 (266)
T ss_dssp ----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCcEEEEcCCc
Confidence 01111112234456789999999999999987778999999999874
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=282.48 Aligned_cols=235 Identities=21% Similarity=0.255 Sum_probs=190.3
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++ .+..+++|+++.++++++++++.
T Consensus 9 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~~~ 76 (247)
T 1uzm_A 9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPK-----------GLFGVEVDVTDSDAVDRAFTAVE 76 (247)
T ss_dssp CCCCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCT-----------TSEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHH-----------HhcCeeccCCCHHHHHHHHHHHH
Confidence 34568999999999999999999999999995 9999999864322 22248899999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 77 ~~~g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~-------- 145 (247)
T 1uzm_A 77 EHQGPVEVLVSNAGLSAD-AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW-------- 145 (247)
T ss_dssp HHHSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC----------
T ss_pred HHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CCEEEEECCHhhcc--------
Confidence 999999999999998744 3566789999999999999999999999999998765 38999999998774
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++... ...
T Consensus 146 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~-~~~ 196 (247)
T 1uzm_A 146 ---------------------------GIGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRA-LDE 196 (247)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH-SCH
T ss_pred ---------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCCcccchhh-cCH
Confidence 34567899999999999999999999 7789999999999999985432 111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. .........+..++.+|+|+|+.+++|+++...+++|+++..||+.
T Consensus 197 ~--~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~~i~vdgG~ 243 (247)
T 1uzm_A 197 R--IQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 243 (247)
T ss_dssp H--HHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred H--HHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCCcCCEEEECCCc
Confidence 0 0011112234456889999999999999988778999999999864
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=279.90 Aligned_cols=237 Identities=19% Similarity=0.191 Sum_probs=192.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|+++|+ +|++++|+.++++... ++ .++.++.+|+++.+++++ +.+.+
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~-~~----~~~~~~~~D~~~~~~~~~----~~~~~ 72 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELE-KY----PGIQTRVLDVTKKKQIDQ----FANEV 72 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGG-GS----TTEEEEECCTTCHHHHHH----HHHHC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-hc----cCceEEEeeCCCHHHHHH----HHHHh
Confidence 57899999999999999999999999995 9999999976655433 22 268899999999999874 44457
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 73 ~~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~----------- 138 (246)
T 2ag5_A 73 ERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSV----------- 138 (246)
T ss_dssp SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT-----------
T ss_pred CCCCEEEECCccCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CceEEEEechHhCc-----------
Confidence 899999999998754 3556788999999999999999999999999998764 38999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-- 278 (358)
+.+ +...|+.||++++.|++.++.|+ .+.||++|+|+||++.|++.......
T Consensus 139 ------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~ 193 (246)
T 2ag5_A 139 ------------------------KGVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARG 193 (246)
T ss_dssp ------------------------BCCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSS
T ss_pred ------------------------CCCCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCcCcCcchhhhhhccc
Confidence 223 67789999999999999999999 77899999999999999854321100
Q ss_pred -hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+..++.+|+|+|+.++||+++++.+++|+.+.+||+.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~~i~vdgG~ 243 (246)
T 2ag5_A 194 NPEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (246)
T ss_dssp SHHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred CcHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEEECCCc
Confidence 0011111112234556889999999999999988888999999999863
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-37 Score=291.13 Aligned_cols=260 Identities=16% Similarity=0.183 Sum_probs=209.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE---------ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA---------CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~---------~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~ 111 (358)
++++||++|||||++|||++++++|+++|+ +|+++ +|+...++...+++...+.. ..+|+++.++++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~~~ 80 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEAGE 80 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGGHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHHHH
Confidence 468999999999999999999999999995 88885 45666777766666544333 348999999999
Q ss_pred HHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 191 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~ 191 (358)
++++++.+.++++|+||||||+.... .+.+.+.++|+..+++|+.|++.++++++|+|++++ .++||++||..+..
T Consensus 81 ~~~~~~~~~~g~iD~lVnnAG~~~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~--~grIV~vsS~~~~~- 156 (319)
T 1gz6_A 81 KLVKTALDTFGRIDVVVNNAGILRDR-SFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIY- 156 (319)
T ss_dssp HHHHHHHHHTSCCCEEEECCCCCCCC-CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCC-ChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhcc-
Confidence 99999999999999999999987543 456789999999999999999999999999998764 38999999987764
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.+++..|+.||++++.|++.+++++ .+.||+||+|+||++ |++
T Consensus 157 ----------------------------------~~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~vn~v~PG~~-t~~ 200 (319)
T 1gz6_A 157 ----------------------------------GNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAG-SRM 200 (319)
T ss_dssp ----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECC-STT
T ss_pred ----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-cccCEEEEEEeCCCc-ccc
Confidence 33567899999999999999999999 778999999999998 764
Q ss_pred ccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccc---------cchhccCHH
Q 018331 272 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQ---------LSQEASDVE 342 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~---------~~~~~~~~~ 342 (358)
... ..+ ... ....+|+++|..++||++++. ..+|+++..||........ ......+.+
T Consensus 201 ~~~-~~~------~~~-----~~~~~p~dvA~~~~~l~s~~~-~~tG~~~~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (319)
T 1gz6_A 201 TET-VMP------EDL-----VEALKPEYVAPLVLWLCHESC-EENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTPE 267 (319)
T ss_dssp TGG-GSC------HHH-----HHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCHH
T ss_pred ccc-cCC------hhh-----hccCCHHHHHHHHHHHhCchh-hcCCCEEEECCCeEEEEeeeeccceeccCCCCCCCHH
Confidence 322 101 001 123589999999999998753 6899999888764321111 123457899
Q ss_pred HHHHHHHHHHHHhcC
Q 018331 343 KARKVWEISEKLVGL 357 (358)
Q Consensus 343 ~~~~~w~~~~~~~~~ 357 (358)
.++++|+.++++++.
T Consensus 268 ~~~~lw~~~~~~~~~ 282 (319)
T 1gz6_A 268 AVRDNWVKICDFSNA 282 (319)
T ss_dssp HHHHTHHHHTCCTTC
T ss_pred HHHHHHHHhhccccc
Confidence 999999999998764
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=275.31 Aligned_cols=242 Identities=20% Similarity=0.195 Sum_probs=202.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh-cCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~-~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++ ...+.++.++.+|+++.++++++++++.+.+++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGA 80 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999999995 9999999988887777766 444567999999999999999999999999999
Q ss_pred ccEEEEcccccCCCCC---CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+||||||..... . +.+.+.++|++.+++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 81 id~li~~Ag~~~~~-~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 147 (250)
T 2cfc_A 81 IDVLVNNAGITGNS-EAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG--AGVIVNIASVASLV---------- 147 (250)
T ss_dssp CCEEEECCCCCCCT-TCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred CCEEEECCCCCCCC-CcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcc----------
Confidence 99999999986432 3 55678899999999999999999999999998764 38999999998763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||++.|++....... .
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~-~ 200 (250)
T 2cfc_A 148 -------------------------AFPGRSAYTTSKGAVLQLTKSVAVDY-AGSGIRCNAVCPGMIETPMTQWRLDQ-P 200 (250)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTTHHHHTS-H
T ss_pred -------------------------CCCCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccCccccccCC-H
Confidence 44567899999999999999999999 77899999999999999865321110 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+..++.+|+|+|+.+++|++++...++|+++..||+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 247 (250)
T 2cfc_A 201 ELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAY 247 (250)
T ss_dssp HHHHHHHTTCTTCSCBCHHHHHHHHHHHHSTTCTTCCSCEEEESTTG
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHcCchhhcccCCEEEECCce
Confidence 00011111234456789999999999999988778999999999864
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-37 Score=283.00 Aligned_cols=243 Identities=19% Similarity=0.228 Sum_probs=193.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|+ |++|||||++|||++++++|+++|+ +|++++|+.+.++...+++... .++.++.+|+++.++++++++++.+.
T Consensus 18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~ 94 (272)
T 2nwq_A 18 SHMS-STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAK-TRVLPLTLDVRDRAAMSAAVDNLPEE 94 (272)
T ss_dssp ---C-CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTT-SCEEEEECCTTCHHHHHHHHHTCCGG
T ss_pred CCcC-cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 4577 9999999999999999999999995 9999999988888777777543 57899999999999999999999888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC-eEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g-~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|.|++++ .| +||++||..+..
T Consensus 95 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~--~g~~IV~isS~~~~~--------- 163 (272)
T 2nwq_A 95 FATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHG--AGASIVNLGSVAGKW--------- 163 (272)
T ss_dssp GSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--TTCEEEEECCGGGTS---------
T ss_pred hCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcEEEEeCCchhcc---------
Confidence 999999999999864324566789999999999999999999999999998764 36 999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++........
T Consensus 164 --------------------------~~~~~~~Y~asKaa~~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~~~~~~ 216 (272)
T 2nwq_A 164 --------------------------PYPGSHVYGGTKAFVEQFSLNLRCDL-QGTGVRVTNLEPGLCESEFSLVRFGGD 216 (272)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHTTC-TTSCCEEEEEEECSBC-----------
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-CccCeEEEEEEcCCCcCcchhcccccc
Confidence 44667899999999999999999999 778999999999999998643211100
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
....... .......+|+|+|+.++||++++ ...+|+.+..++...
T Consensus 217 ~~~~~~~---~~~~~~~~pedvA~~v~~l~s~~-~~~~g~~i~v~~~~~ 261 (272)
T 2nwq_A 217 QARYDKT---YAGAHPIQPEDIAETIFWIMNQP-AHLNINSLEIMPVSQ 261 (272)
T ss_dssp ------------CCCCBCHHHHHHHHHHHHTSC-TTEEEEEEEEEETTE
T ss_pred hHHHHHh---hccCCCCCHHHHHHHHHHHhCCC-ccCccceEEEeeccC
Confidence 0000000 11122479999999999999874 468999998877643
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=281.09 Aligned_cols=244 Identities=17% Similarity=0.168 Sum_probs=204.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..+++|++|||||+||||+++++.|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 118 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 118 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHh
Confidence 568899999999999999999999999995 8999999988888777777666678999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 119 ~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~---------- 185 (285)
T 2c07_A 119 HKNVDILVNNAGITRD-NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLT---------- 185 (285)
T ss_dssp CSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH----------
T ss_pred cCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEECChhhcc----------
Confidence 9999999999998744 3566789999999999999999999999999998654 37999999998763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||++.|++... ..+..
T Consensus 186 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~ 238 (285)
T 2c07_A 186 -------------------------GNVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDK-ISEQI 238 (285)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC------CCHHH
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcEecCchhh-cCHHH
Confidence 34567889999999999999999999 7789999999999999986532 11110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+..++.+|+|+|+++++++++++..++|+++.+||+.
T Consensus 239 --~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~G~~i~v~gG~ 283 (285)
T 2c07_A 239 --KKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 283 (285)
T ss_dssp --HHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred --HHHHHhhCCCCCCCCHHHHHHHHHHHhCCCcCCCCCCEEEeCCCc
Confidence 011111234456889999999999999988778999999999863
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=276.86 Aligned_cols=247 Identities=19% Similarity=0.212 Sum_probs=203.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+||||++++++|+++|+ +|++++|+....+...+++... .++.++.+|+++.++++++++++.+.
T Consensus 12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 89 (278)
T 2bgk_A 12 NRLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAK 89 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCC-CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999987777666666432 37899999999999999999999998
Q ss_pred CCCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... ...+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 158 (278)
T 2bgk_A 90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFT--------- 158 (278)
T ss_dssp HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTC---------
T ss_pred cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC--CCeEEEEeeccccC---------
Confidence 9999999999998643 23556788999999999999999999999999998764 38999999998773
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCc-hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFD-GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.+ +...|+.||++++.+++.++.++ .+.||++++|+||++.|++.......
T Consensus 159 --------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 211 (278)
T 2bgk_A 159 --------------------------AGEGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGV 211 (278)
T ss_dssp --------------------------CCTTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSC
T ss_pred --------------------------CCCCCCcchHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeceecchhhhhhccc
Confidence 223 56789999999999999999999 77899999999999999865432210
Q ss_pred hhhhhcchhHH--hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQK--YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~--~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........... .+..++.+|+|+|+.++++++++....+|+++..|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 262 (278)
T 2bgk_A 212 DSSRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGY 262 (278)
T ss_dssp CHHHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred chhHHHHhhhcccccccccCCHHHHHHHHHHHcCcccccCCCCEEEECCcc
Confidence 00000011111 12345789999999999999987777999999999864
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=274.06 Aligned_cols=244 Identities=20% Similarity=0.207 Sum_probs=203.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++... .++.++.+|+++.+++.++++++.+.+
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP-DQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcc-CceEEEECCCCCHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 9999999988777776666543 578999999999999999999999989
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.++|.|.+++. +++||++||..+..
T Consensus 81 ~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~isS~~~~~----------- 147 (251)
T 1zk4_A 81 GPVSTLVNNAGIAVN-KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFV----------- 147 (251)
T ss_dssp SSCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CCEEEEeCCchhcc-----------
Confidence 999999999998744 35667899999999999999999999999999987641 27999999998774
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccchhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||++++.+++.++.|+ . +.||++++|+||++.|++........
T Consensus 148 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~~~i~v~~v~Pg~v~t~~~~~~~~~~ 202 (251)
T 1zk4_A 148 ------------------------GDPSLGAYNASKGAVRIMSKSAALDC-ALKDYDVRVNTVHPGYIKTPLVDDLPGAE 202 (251)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HHTTCSEEEEEEEECCBCCHHHHTSTTHH
T ss_pred ------------------------CCCCCccchHHHHHHHHHHHHHHHHh-cccCCCeEEEEEeeCcCcchhhhhcCchh
Confidence 44567899999999999999999998 5 77999999999999998553211010
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ......+..++.+|+|+|+.++++++++...++|+.+.+||+.
T Consensus 203 ~~~--~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 248 (251)
T 1zk4_A 203 EAM--SQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp HHH--TSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhH--HHhhcCCCCCCcCHHHHHHHHHHHcCcccccccCcEEEECCCc
Confidence 000 0111223456789999999999999987777999999999864
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=274.99 Aligned_cols=235 Identities=17% Similarity=0.228 Sum_probs=188.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++. .++.++.+|+++.++++++++++.+.++++|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 76 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELG---DNLYIAQLDVRNRAAIEEMLASLPAEWCNID 76 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999995 99999999888777776664 4789999999999999999999998999999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||......++.+.+.++|++.+++|+.|++.++++++|+|++++ .++||++||..+..
T Consensus 77 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------------- 139 (248)
T 3asu_A 77 ILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN--HGHIINIGSTAGSW--------------- 139 (248)
T ss_dssp EEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS---------------
T ss_pred EEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CceEEEEccchhcc---------------
Confidence 9999999863233556788999999999999999999999999998754 38999999998774
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc-CCcccccchhhhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIPLFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~-t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||++++.|+++++.|+ .+.||+||+|+||+|+ |++.............
T Consensus 140 --------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~gT~~~~~~~~~~~~~~~ 198 (248)
T 3asu_A 140 --------------------PYAGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAE 198 (248)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECSBCC----------------
T ss_pred --------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeccccccCcchhhcccCchHHHH
Confidence 45677899999999999999999999 7889999999999999 8854221100000000
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
... ......+|+|+|+.++||++++ ...+|+.+..+..
T Consensus 199 ~~~---~~~~~~~p~dvA~~v~~l~s~~-~~~~g~~i~v~~~ 236 (248)
T 3asu_A 199 KTY---QNTVALTPEDVSEAVWWVSTLP-AHVNINTLEMMPV 236 (248)
T ss_dssp ---------CCBCHHHHHHHHHHHHHSC-TTCCCCEEEECCT
T ss_pred HHH---hccCCCCHHHHHHHHHHHhcCC-ccceeeEEEEccc
Confidence 111 1123469999999999999974 4688988887754
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=275.11 Aligned_cols=235 Identities=21% Similarity=0.215 Sum_probs=193.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||++++++|+++|+ +|++++|+.++ ..+++ .+.++.+|+++ ++++++++++.+.++++
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~---~~~~~-----~~~~~~~D~~~-~~~~~~~~~~~~~~g~i 71 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE---AAQSL-----GAVPLPTDLEK-DDPKGLVKRALEALGGL 71 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH---HHHHH-----TCEEEECCTTT-SCHHHHHHHHHHHHTSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH---HHHhh-----CcEEEecCCch-HHHHHHHHHHHHHcCCC
Confidence 68999999999999999999999995 99999998755 22333 17889999999 99999999999888999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..+.
T Consensus 72 d~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~------------ 136 (239)
T 2ekp_A 72 HVLVHAAAVNVR-KPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG--WGRVLFIGSVTTFTAG------------ 136 (239)
T ss_dssp CEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTSCC------------
T ss_pred CEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECchhhccCC------------
Confidence 999999998754 4566889999999999999999999999999998764 3899999999876411
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||++++.|++.++.|+ .+.||++|+|+||++.|++... .........
T Consensus 137 ---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~~~~~ 193 (239)
T 2ekp_A 137 ---------------------GPVPIPAYTTAKTALLGLTRALAKEW-ARLGIRVNLLCPGYVETEFTLP-LRQNPELYE 193 (239)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHH-HHTCHHHHH
T ss_pred ---------------------CCCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCccCchhhc-cccCHHHHH
Confidence 11567799999999999999999999 7789999999999999986432 110000011
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......+.+++.+|+|+|+.+++|++++...++|+++.+||+.
T Consensus 194 ~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~~~vdgG~ 236 (239)
T 2ekp_A 194 PITARIPMGRWARPEEIARVAAVLCGDEAEYLTGQAVAVDGGF 236 (239)
T ss_dssp HHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHcCchhcCCCCCEEEECCCc
Confidence 1112234456889999999999999988778999999999864
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=277.87 Aligned_cols=248 Identities=17% Similarity=0.125 Sum_probs=202.8
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..+++++|++|||||+||||++++++|+++|+ +|++++|+....+...+.+...+.++.++++|+++.++++++++++.
T Consensus 28 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 106 (279)
T 3ctm_A 28 DLFSLKGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQE 106 (279)
T ss_dssp GGGCCTTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHH
Confidence 34578999999999999999999999999995 99999998766666655554445678999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCC-CCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.++++|+||||||.......+. +.+.++|++.+++|+.+++.+++.+++.|.+++ .++||++||..+..+
T Consensus 107 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~~------ 178 (279)
T 3ctm_A 107 KDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG--KGSLIITSSISGKIV------ 178 (279)
T ss_dssp HHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCCTTSCC------
T ss_pred HHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCeEEEECchHhccC------
Confidence 98899999999999875423444 678899999999999999999999999998764 389999999987631
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
...++...|+.||++++.+++.++.++ .+.| +|++|+||+++|++.... .
T Consensus 179 ---------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~-~v~~v~Pg~v~t~~~~~~-~ 228 (279)
T 3ctm_A 179 ---------------------------NIPQLQAPYNTAKAACTHLAKSLAIEW-APFA-RVNTISPGYIDTDITDFA-S 228 (279)
T ss_dssp ------------------------------CCHHHHHHHHHHHHHHHHHHHHHT-TTTC-EEEEEEECSBSSTTTSSC-C
T ss_pred ---------------------------CCCCCcccHHHHHHHHHHHHHHHHHHh-cccC-CEEEEeccCCcccccccc-C
Confidence 014567899999999999999999999 6778 999999999999865321 1
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+. .........+..++.+|+|+|+.+++|++++...++|+.+.+||+.
T Consensus 229 ~~--~~~~~~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~~i~vdgG~ 276 (279)
T 3ctm_A 229 KD--MKAKWWQLTPLGREGLTQELVGGYLYLASNASTFTTGSDVVIDGGY 276 (279)
T ss_dssp HH--HHHHHHHHSTTCSCBCGGGTHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hH--HHHHHHHhCCccCCcCHHHHHHHHHHHhCccccCccCCEEEECCCe
Confidence 11 1111122334566889999999999999988778999999999864
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=273.78 Aligned_cols=242 Identities=18% Similarity=0.202 Sum_probs=199.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCce-EEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i-~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||+||||++++++|+++|+ +|++++|+.++++...+++. .++ .++.+|+++.++++++++++.+
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~ 82 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELG---AAVAARIVADVTDAEAMTAAAAEAEA 82 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc---ccceeEEEEecCCHHHHHHHHHHHHh
Confidence 468899999999999999999999999995 99999999887777666652 456 8899999999999999999988
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 83 -~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 149 (254)
T 2wsb_A 83 -VAPVSILVNSAGIARL-HDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG--AGAIVNLGSMSGTI--------- 149 (254)
T ss_dssp -HSCCCEEEECCCCCCC-BCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred -hCCCcEEEECCccCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CcEEEEEecchhcc---------
Confidence 8899999999998754 3556788999999999999999999999999998764 38999999988763
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchh--hhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+.. ..|+.||++++.+++.++.++ .+.||++++|+||++.|++.....
T Consensus 150 --------------------------~~~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~Pg~v~t~~~~~~~- 201 (254)
T 2wsb_A 150 --------------------------VNRPQFASSYMASKGAVHQLTRALAAEW-AGRGVRVNALAPGYVATEMTLKMR- 201 (254)
T ss_dssp --------------------------CCSSSCBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHHHH-
T ss_pred --------------------------CCCCCcchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecccCchhhhccc-
Confidence 22233 789999999999999999999 777999999999999998543211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.............+..++.+|+|+|+.+++++++.....+|+++.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 251 (254)
T 2wsb_A 202 ERPELFETWLDMTPMGRCGEPSEIAAAALFLASPAASYVTGAILAVDGGY 251 (254)
T ss_dssp TCHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred cChHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCcccccccCCEEEECCCE
Confidence 00001111112234456789999999999999987777999999999864
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=284.08 Aligned_cols=234 Identities=18% Similarity=0.194 Sum_probs=193.9
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+++||++|||||++|||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 104 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFR 104 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999999999995 999999999998888888877778899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|.+++. +++||++||..+..
T Consensus 105 ~~g~id~lvnnAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~--------- 173 (301)
T 3tjr_A 105 LLGGVDVVFSNAGIVVA-GPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGT-GGHIAFTASFAGLV--------- 173 (301)
T ss_dssp HHSSCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCS-CEEEEEECCGGGTS---------
T ss_pred hCCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC-CcEEEEeCchhhcC---------
Confidence 99999999999998754 45667899999999999999999999999999987542 37999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|++.|+++++.|+ .+.||+|++|+||+|+|++........
T Consensus 174 --------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~ 226 (301)
T 3tjr_A 174 --------------------------PNAGLGTYGVAKYGVVGLAETLAREV-KPNGIGVSVLCPMVVETKLVSNSERIR 226 (301)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEECCSCCCSSHHHHHHHHC
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCcccccccccccccc
Confidence 55778899999999999999999999 778999999999999998654321100
Q ss_pred h---hh---hcchhH-HhhhcCccchhHHhhhhhhhhcCC
Q 018331 280 F---RL---LFPPFQ-KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 280 ~---~~---~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
. .. ....+. .......++|+++|+.++.++..+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 227 GADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp ----------------------CCCHHHHHHHHHHHHHHT
T ss_pred chhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 0 00 000011 111224679999999999999765
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=279.54 Aligned_cols=231 Identities=16% Similarity=0.138 Sum_probs=191.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++|++|||||++|||++++++|++ .| ..|++++|+... ...++.++++|+++.++++++++.+. +
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g-~~v~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~~~--~ 68 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKN-HTVINIDIQQSF----------SAENLKFIKADLTKQQDITNVLDIIK--N 68 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTT-EEEEEEESSCCC----------CCTTEEEEECCTTCHHHHHHHHHHTT--T
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCC-cEEEEecccccc----------ccccceEEecCcCCHHHHHHHHHHHH--h
Confidence 4688999999999999999999999 67 699999987531 12467899999999999999995544 6
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|+++ ++||++||..+..
T Consensus 69 ~~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~----g~iv~~sS~~~~~----------- 132 (244)
T 4e4y_A 69 VSFDGIFLNAGILIK-GSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG----ASIVFNGSDQCFI----------- 132 (244)
T ss_dssp CCEEEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE----EEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCccCCC-CCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC----cEEEEECCHHHcc-----------
Confidence 799999999998755 466788999999999999999999999999999764 6999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF- 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~- 280 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+|+|++.........
T Consensus 133 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~ 187 (244)
T 4e4y_A 133 ------------------------AKPNSFAYTLSKGAIAQMTKSLALDL-AKYQIRVNTVCPGTVDTDLYRNLIQKYAN 187 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESCBCCHHHHHHHHHHHH
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HHcCeEEEEEecCccCchhhHHHHHhhhh
Confidence 55678899999999999999999999 7789999999999999986533211100
Q ss_pred -------hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 -------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 -------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|+.++||+++.+.+++|+.+.+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~~i~vdGG~ 241 (244)
T 4e4y_A 188 NVGISFDEAQKQEEKEFPLNRIAQPQEIAELVIFLLSDKSKFMTGGLIPIDGGY 241 (244)
T ss_dssp HHTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hcCCCHHHHHHHHhhcCCCCCCcCHHHHHHHHHHHhcCccccccCCeEeECCCc
Confidence 01111223345567889999999999999998888999999999864
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-37 Score=277.29 Aligned_cols=234 Identities=14% Similarity=0.163 Sum_probs=191.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-e--cChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMA-C--RDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~--r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|++|||||++|||++++++|+++|+ +|+++ + |+.+.++...+++ .+ +|+.+.++++++++++.+.+
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~--~~-------~~~~~~~~v~~~~~~~~~~~ 70 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESEN--PG-------TIALAEQKPERLVDATLQHG 70 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHS--TT-------EEECCCCCGGGHHHHHGGGS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHh--CC-------CcccCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999995 99999 6 9988777776665 11 23337778888999999999
Q ss_pred CCccEEEEcccccCCC--CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPT--AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|+||||||..... ..+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 71 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~--~g~iv~isS~~~~~--------- 139 (244)
T 1zmo_A 71 EAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAG--GASVIFITSSVGKK--------- 139 (244)
T ss_dssp SCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCGGGTS---------
T ss_pred CCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECChhhCC---------
Confidence 9999999999987541 3567889999999999999999999999999998765 48999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc--ccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF--REHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~--~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.. ....
T Consensus 140 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~ 192 (244)
T 1zmo_A 140 --------------------------PLAYNPLYGPARAATVALVESAAKTL-SRDGILLYAIGPNFFNNPTYFPTSDWE 192 (244)
T ss_dssp --------------------------CCTTCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCBTTTBCHHHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccccccc
Confidence 44677899999999999999999999 778999999999999998651 2111
Q ss_pred hhhhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ......... ..+..++.+|+|+|+.++||+++....++|+++.+||+.
T Consensus 193 ~-~~~~~~~~~~~~p~~r~~~pe~vA~~v~~l~s~~~~~~tG~~i~vdgG~ 242 (244)
T 1zmo_A 193 N-NPELRERVDRDVPLGRLGRPDEMGALITFLASRRAAPIVGQFFAFTGGY 242 (244)
T ss_dssp H-CHHHHHHHHHHCTTCSCBCHHHHHHHHHHHHTTTTGGGTTCEEEESTTC
T ss_pred c-hHHHHHHHhcCCCCCCCcCHHHHHHHHHHHcCccccCccCCEEEeCCCC
Confidence 0 011111112 335567889999999999999988888999999999864
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=273.47 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=204.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 85 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 468899999999999999999999999995 9999999988877777777655678899999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||..... .+ +.+.++|++.+++|+.+++.++++++|.|.+.+ .++||++||..+..
T Consensus 86 ~~~~d~vi~~Ag~~~~~-~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 151 (255)
T 1fmc_A 86 LGKVDILVNNAGGGGPK-PF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN---------- 151 (255)
T ss_dssp HSSCCEEEECCCCCCCC-CT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEEEECCCCCCCC-CC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcchhhcC----------
Confidence 89999999999987543 33 678899999999999999999999999998764 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++......+.
T Consensus 152 -------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~- 204 (255)
T 1fmc_A 152 -------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPE- 204 (255)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHH-
T ss_pred -------------------------CCCCCcccHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecccCcchhhhhccChH-
Confidence 44567789999999999999999999 778999999999999998543321111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+..++.+|+|+|++++++++++...++|+.+..+++.
T Consensus 205 -~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 250 (255)
T 1fmc_A 205 -IEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp -HHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHHhcCCcccCCCHHHHHHHHHHHhCCccccCCCcEEEECCce
Confidence 0111112234456789999999999999887777899999988864
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=275.94 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=201.1
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+++++|++|||||+||||++++++|+++| ++|++++|+........+++.. .+.++.++.+|+++.++++++++++.
T Consensus 9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~ 87 (265)
T 1h5q_A 9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQID 87 (265)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCC-CeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHH
Confidence 356899999999999999999999999999 5999999975554444444422 24678999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++. .++||++||..+.......
T Consensus 88 ~~~~~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~~~~~~--- 162 (265)
T 1h5q_A 88 ADLGPISGLIANAGVSVV-KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQSS--- 162 (265)
T ss_dssp HHSCSEEEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEEE---
T ss_pred HhcCCCCEEEECCCcCCC-CchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCC-CceEEEeCCchhhcccccc---
Confidence 999999999999998754 35567789999999999999999999999999886531 3799999998876411000
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
..+..+...|+.||++++.|++.++.++ .+.||++++|+||++.|++.......
T Consensus 163 -------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 216 (265)
T 1h5q_A 163 -------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKK 216 (265)
T ss_dssp -------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSCHH
T ss_pred -------------------------ccccccccccHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCccccccccccchh
Confidence 0112346789999999999999999999 77899999999999999865332111
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. .......+..++.+|+|+|+.+++|++++...++|+.+..||+.
T Consensus 217 ~~---~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 262 (265)
T 1h5q_A 217 IR---DHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQ 262 (265)
T ss_dssp HH---HHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred HH---HHHHhcCcccCCCCHHHHHHHHHhhccCchhcCcCcEEEecCCE
Confidence 10 11112234456789999999999999988778999999999864
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=275.29 Aligned_cols=244 Identities=20% Similarity=0.201 Sum_probs=199.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-------CceEEEEecCCCHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-------ENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-------~~i~~~~~Dl~~~~~i~~~~ 114 (358)
++++|++|||||+||||+++++.|+++|+ +|++++|+.+.++...+++...+ .++.++.+|+++.+++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 82 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLL 82 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHH
Confidence 57899999999999999999999999995 99999999888777776665443 57899999999999999999
Q ss_pred HHHHhcCCCc-cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 115 DTFRRSGRPL-DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 115 ~~~~~~~~~i-D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
+.+.+.++++ |+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++. .++||++||..+..
T Consensus 83 ~~~~~~~g~i~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~g~iv~isS~~~~~--- 157 (264)
T 2pd6_A 83 EQVQACFSRPPSVVVSCAGITQD-EFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGC-RGSIINISSIVGKV--- 157 (264)
T ss_dssp HHHHHHHSSCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCTHHHH---
T ss_pred HHHHHHhCCCCeEEEECCCcCCC-cchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC-CceEEEECChhhcc---
Confidence 9999988998 999999998754 34557789999999999999999999999999987531 27999999987763
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||++++.|++.+++++ .+.||++++|+||++.|++..
T Consensus 158 --------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 204 (264)
T 2pd6_A 158 --------------------------------GNVGQTNYAASKAGVIGLTQTAAREL-GRHGIRCNSVLPGFIATPMTQ 204 (264)
T ss_dssp --------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSCC--
T ss_pred --------------------------------CCCCChhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeecccccchh
Confidence 44567899999999999999999999 778999999999999998653
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ..+. .........+..++.+|+|+|+.++++++++...++|+.+.+||+.
T Consensus 205 ~-~~~~--~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 255 (264)
T 2pd6_A 205 K-VPQK--VVDKITEMIPMGHLGDPEDVADVVAFLASEDSGYITGTSVEVTGGL 255 (264)
T ss_dssp -----------CTGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred h-cCHH--HHHHHHHhCCCCCCCCHHHHHHHHHHHcCCcccCCCCCEEEECCCc
Confidence 2 1110 1111112233456789999999999999987777999999999874
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=276.93 Aligned_cols=247 Identities=16% Similarity=0.206 Sum_probs=204.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-----CCCceEEEEecCCCHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-----~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
..+++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++.. .+.++.++++|+++.++++++++
T Consensus 14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~ 92 (303)
T 1yxm_A 14 GLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK 92 (303)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence 368899999999999999999999999995 999999998887777766643 35689999999999999999999
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++.+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.+.+.. .++||++||.. ..
T Consensus 93 ~~~~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~-~~----- 163 (303)
T 1yxm_A 93 STLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPT-KA----- 163 (303)
T ss_dssp HHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCC-TT-----
T ss_pred HHHHHcCCCCEEEECCCCCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCeEEEEEeec-cc-----
Confidence 999999999999999997643 3455778999999999999999999999999655432 37999999987 42
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.+|+++..+++.++.++ .+.||++++|+||++.|++....
T Consensus 164 ------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 212 (303)
T 1yxm_A 164 ------------------------------GFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVEN 212 (303)
T ss_dssp ------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTT
T ss_pred ------------------------------CCCcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCcccchhhhh
Confidence 44567889999999999999999999 67799999999999999853222
Q ss_pred chhhh-hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 276 HIPLF-RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 276 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
..... ..........+..++.+|+|+|+.+++|+++....++|+++.+||+..
T Consensus 213 ~~~~~~~~~~~~~~~~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~~~~v~gG~~ 266 (303)
T 1yxm_A 213 YGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRS 266 (303)
T ss_dssp SGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred ccccchHHHHHHHhcCcccCCCCHHHHHHHHHHHhCcccccCCCcEEEECCCee
Confidence 21111 111222233445668899999999999999887789999999999754
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=273.79 Aligned_cols=243 Identities=21% Similarity=0.211 Sum_probs=185.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+||||++++++|+++|+ +|+++ +|+...++...+.+...+.++.++.+|+++.++++++++++.+.
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDA 80 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHh
Confidence 57899999999999999999999999995 88888 67766666666666555678999999999999999999999998
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 81 ~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 147 (247)
T 2hq1_A 81 FGRIDILVNNAGITRD-TLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQK--SGKIINITSIAGII---------- 147 (247)
T ss_dssp HSCCCEEEECC----------------CHHHHHHTHHHHHHHHHHHHHHHHHHT--CEEEEEECC---------------
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CcEEEEEcChhhcc----------
Confidence 9999999999998743 3455678889999999999999999999999998754 38999999987764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++... .....
T Consensus 148 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~~ 200 (247)
T 2hq1_A 148 -------------------------GNAGQANYAASKAGLIGFTKSIAKEF-AAKGIYCNAVAPGIIKTDMTDV-LPDKV 200 (247)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCHHH
T ss_pred -------------------------CCCCCcHhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEEEEEeccchhh-cchHH
Confidence 34567889999999999999999999 7779999999999999975422 11100
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+..++.+|+|+|+.++++++++....+|+.+..+++.
T Consensus 201 --~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 245 (247)
T 2hq1_A 201 --KEMYLNNIPLKRFGTPEEVANVVGFLASDDSNYITGQVINIDGGL 245 (247)
T ss_dssp --HHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred --HHHHHhhCCCCCCCCHHHHHHHHHHHcCcccccccCcEEEeCCCc
Confidence 001111223456789999999999999887777899999998863
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=293.37 Aligned_cols=244 Identities=10% Similarity=0.082 Sum_probs=195.4
Q ss_pred CCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChH---------HHHHHHHHhcCC---CCceEEEEecCCCH--
Q 018331 44 RKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFL---------KAERAAKSAGMA---KENYTIMHLDLASL-- 107 (358)
Q Consensus 44 ~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~---------~~~~~~~~~~~~---~~~i~~~~~Dl~~~-- 107 (358)
++|++|||||++ |||+++|++|+++|+ +|++++|++. .++...+..... ...+.++.+|+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~-~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 79 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccch
Confidence 478999999986 999999999999995 9997776642 122222222221 23478889999988
Q ss_pred H------------------HHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHH
Q 018331 108 D------------------SVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168 (358)
Q Consensus 108 ~------------------~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~ 168 (358)
+ +++++++++.+.++++|+||||||+.. ....+.+.+.++|++++++|+.|++.++++++|
T Consensus 80 ~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p 159 (329)
T 3lt0_A 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred hhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 8 999999999999999999999999752 335677889999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhh-hhHHhHHHHHHHHHHH
Q 018331 169 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK-AYKDSKVCNMLTMQEF 247 (358)
Q Consensus 169 ~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~al~~~~~~l 247 (358)
+|+++ |+||++||..+.. +.++.. .|+.||+|+.+|++.|
T Consensus 160 ~m~~~----g~Iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaal~~~~~~l 200 (329)
T 3lt0_A 160 IMKPQ----SSIISLTYHASQK-----------------------------------VVPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEEE----EEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHHHHHH
T ss_pred HHhhC----CeEEEEeCccccC-----------------------------------CCCcchHHHHHHHHHHHHHHHHH
Confidence 99875 7999999998874 445664 8999999999999999
Q ss_pred HHhhccc-CCcEEEEecCCcccCCcccccchh-----------------------------------------hhh-hhc
Q 018331 248 HRRFHEE-TGIAFASLYPGCIATTGLFREHIP-----------------------------------------LFR-LLF 284 (358)
Q Consensus 248 a~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~-----------------------------------------~~~-~~~ 284 (358)
+.|+ .+ .||+||+|+||+|+|++....... +.. ...
T Consensus 201 a~el-~~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (329)
T 3lt0_A 201 AYHL-GRNYNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIE 279 (329)
T ss_dssp HHHH-HHHHCCEEEEEEECCCCCHHHHTCC------------------------------------------CHHHHHHH
T ss_pred HHHh-CCccCeEEEEEecceeechhHhhhhhhcccccccccccccccccccchhhcccccchhhhhhhhcccchhHHHHH
Confidence 9999 66 799999999999999865432100 000 011
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
......+.+++.+|+|+|+.++||+++.+.++||+.|.+||+..
T Consensus 280 ~~~~~~p~~r~~~peevA~~v~fL~s~~a~~itG~~i~vdGG~~ 323 (329)
T 3lt0_A 280 YSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGLN 323 (329)
T ss_dssp HHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHhhcCcccCcCCHHHHHHHHHHHhCchhccccCcEEEEcCCee
Confidence 22334566778899999999999999988889999999999764
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-36 Score=273.05 Aligned_cols=241 Identities=21% Similarity=0.201 Sum_probs=196.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++.+|+++.++++++++++.+.
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKL---GNNCVFAPADVTSEKDVQTALALAKGK 83 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHh---CCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 468899999999999999999999999995 9999999987777666665 357899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCC-----CCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC----CCCeEEEEecCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEP-----TFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY----PSKRLIIVGSITGNTN 191 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~-----~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~----~~g~iv~vsS~~~~~~ 191 (358)
++++|+||||||......... +.+.++|++.+++|+.+++.++++++|.|.++.. ..++||++||..+..
T Consensus 84 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~- 162 (265)
T 2o23_A 84 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE- 162 (265)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred CCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC-
Confidence 999999999999875432221 3688999999999999999999999999987611 148999999988763
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||+++|++
T Consensus 163 ----------------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~ 207 (265)
T 2o23_A 163 ----------------------------------GQVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPL 207 (265)
T ss_dssp ----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC-
T ss_pred ----------------------------------CCCCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccccCcc
Confidence 44567899999999999999999999 7789999999999999986
Q ss_pred ccccchhhhhhhcc-hhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 272 LFREHIPLFRLLFP-PFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ... .... .....+. .++.+|+|+|+.++++++. ..++|+.+..||..
T Consensus 208 ~~~-~~~---~~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~i~vdgG~ 259 (265)
T 2o23_A 208 LTS-LPE---KVCNFLASQVPFPSRLGDPAEYAHLVQAIIEN--PFLNGEVIRLDGAI 259 (265)
T ss_dssp -------------CHHHHTCSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred ccc-cCH---HHHHHHHHcCCCcCCCCCHHHHHHHHHHHhhc--CccCceEEEECCCE
Confidence 532 111 1111 1112233 5678999999999999964 36899999999874
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-36 Score=271.18 Aligned_cols=240 Identities=18% Similarity=0.161 Sum_probs=198.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
||++|||||+||||++++++|+++|+ +|++ .+|+.+..+...+++...+.++.++.+|+++.++++++++++.+.+++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGT 79 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 58999999999999999999999995 8877 589887777776666555668899999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+++ .++||++||..+..
T Consensus 80 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~------------- 143 (244)
T 1edo_A 80 IDVVVNNAGITRD-TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLI------------- 143 (244)
T ss_dssp CSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH-------------
T ss_pred CCEEEECCCCCCC-cCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC--CCEEEEECChhhcC-------------
Confidence 9999999998754 3555778999999999999999999999999998754 38999999987763
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++..........
T Consensus 144 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~-- 198 (244)
T 1edo_A 144 ----------------------GNIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEK-- 198 (244)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCHHHHH--
T ss_pred ----------------------CCCCCccchhhHHHHHHHHHHHHHHh-hhcCCEEEEEeeCccccchhhhcChHHHH--
Confidence 34567889999999999999999998 77899999999999999854321111111
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhh-cCCCCCCCceeeecCCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVV-SDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~-~~~~~~~~G~~~~~d~~~ 327 (358)
......+..++.+|+|+|+.+++++ ++....++|+++..|+..
T Consensus 199 -~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gG~ 242 (244)
T 1edo_A 199 -KILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp -HHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred -HHhhcCCCCCCCCHHHHHHHHHHHhCCCccCCcCCCEEEeCCCc
Confidence 1111224456789999999999999 555556899999999863
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=267.20 Aligned_cols=231 Identities=19% Similarity=0.230 Sum_probs=200.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCc------EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~------~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+|++|||||+||||++++++|+++|+. .|++++|+...++...+++...+.++.++.+|+++.++++++++++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 689999999999999999999999932 89999999888887777776666789999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|.+++ .++||++||..+..
T Consensus 82 ~~~g~id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~-------- 150 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVGRF-GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATK-------- 150 (244)
T ss_dssp HHTSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS--------
T ss_pred HhCCCCCEEEEcCCcCCc-CccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCEEEEEecchhcC--------
Confidence 999999999999998744 3556778999999999999999999999999997654 38999999998773
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||++.|++.......
T Consensus 151 ---------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~ 202 (244)
T 2bd0_A 151 ---------------------------AFRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDE 202 (244)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCCCST
T ss_pred ---------------------------CCCCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEECCCccchhhhhcccc
Confidence 44667899999999999999999999 77899999999999999865432110
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ..++.+|+|+|+.++++++++...++|+.+..++.
T Consensus 203 ------~------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~~ 238 (244)
T 2bd0_A 203 ------M------QALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTS 238 (244)
T ss_dssp ------T------GGGSBCHHHHHHHHHHHHTSCTTEEEEEEEEEETT
T ss_pred ------c------cccCCCHHHHHHHHHHHHhCCccccchheEEeccc
Confidence 0 12568999999999999999888899999887774
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=270.16 Aligned_cols=242 Identities=18% Similarity=0.180 Sum_probs=201.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+||||++++++|+++| ++|++++|+.+.++...+++.. .+.++.++.+|+++.++++++++++.+.
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAG-STVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNL 82 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCC-CEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999 4999999998777766665543 3567899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ .++||++||..+..
T Consensus 83 ~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~---------- 149 (248)
T 2pnf_A 83 VDGIDILVNNAGITRD-KLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR--WGRIVNISSVVGFT---------- 149 (248)
T ss_dssp SSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT--CEEEEEECCHHHHH----------
T ss_pred cCCCCEEEECCCCCCC-CccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC--CcEEEEEccHHhcC----------
Confidence 9999999999998754 3455778999999999999999999999999998764 37999999987653
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++... .....
T Consensus 150 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~-~~~~~ 202 (248)
T 2pnf_A 150 -------------------------GNVGQVNYSTTKAGLIGFTKSLAKEL-APRNVLVNAVAPGFIETDMTAV-LSEEI 202 (248)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGG-SCHHH
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeceecCchhhh-ccHHH
Confidence 33567789999999999999999999 6779999999999999986532 11110
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. .......+..++.+|+|+|+.+++++++.....+|+.+..|++
T Consensus 203 ~--~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg 246 (248)
T 2pnf_A 203 K--QKYKEQIPLGRFGSPEEVANVVLFLCSELASYITGEVIHVNGG 246 (248)
T ss_dssp H--HHHHHTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred H--HHHHhcCCCCCccCHHHHHHHHHHHhCchhhcCCCcEEEeCCC
Confidence 0 0111122345678999999999999988777789999998875
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=276.53 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=189.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||++|||++++++|+++|+ +|++++|+.+.++...+ +...+.++..+ +.++++++++++.+.++++|
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~-l~~~~~~~~~~-----d~~~v~~~~~~~~~~~g~iD 74 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEA-FAETYPQLKPM-----SEQEPAELIEAVTSAYGQVD 74 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHH-HHHHCTTSEEC-----CCCSHHHHHHHHHHHHSCCC
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-HHhcCCcEEEE-----CHHHHHHHHHHHHHHhCCCC
Confidence 6899999999999999999999995 99999999877665544 43334455444 56677888888888889999
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 75 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~--------------- 137 (254)
T 1zmt_A 75 VLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFG--------------- 137 (254)
T ss_dssp EEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTS---------------
T ss_pred EEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEECCccccc---------------
Confidence 9999999872334566789999999999999999999999999998764 38999999998874
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc---------cCCcccccc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI---------ATTGLFREH 276 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v---------~t~~~~~~~ 276 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+| +|++....
T Consensus 138 --------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~- 195 (254)
T 1zmt_A 138 --------------------PWKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTN- 195 (254)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTC-
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCccccccccccCCCcccccC-
Confidence 44677899999999999999999999 778999999999999 66533211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+ ..........+..++.+|+|+|+.++||+++.+..++|+++.+||...
T Consensus 196 -~--~~~~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~~~~vdgG~~ 244 (254)
T 1zmt_A 196 -P--EHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 244 (254)
T ss_dssp -H--HHHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred -h--HHHHHHhccCCCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCCch
Confidence 0 001111122344567899999999999999888789999999999753
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=267.65 Aligned_cols=218 Identities=15% Similarity=0.145 Sum_probs=182.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||++|||++++++|+++| .+|++++|+.. +|+++.++++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G-~~V~~~~r~~~--------------------~D~~~~~~v~~~~~~~--- 57 (223)
T 3uce_A 2 MGSDKTVYVVLGGTSGIGAELAKQLESEH-TIVHVASRQTG--------------------LDISDEKSVYHYFETI--- 57 (223)
T ss_dssp ---CCEEEEEETTTSHHHHHHHHHHCSTT-EEEEEESGGGT--------------------CCTTCHHHHHHHHHHH---
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEecCCcc--------------------cCCCCHHHHHHHHHHh---
Confidence 46789999999999999999999999999 59999999753 8999999999998865
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|++. |+||++||..+..
T Consensus 58 -g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~----g~iv~~sS~~~~~---------- 122 (223)
T 3uce_A 58 -GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQG----GSITLTSGMLSRK---------- 122 (223)
T ss_dssp -CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEE----EEEEEECCGGGTS----------
T ss_pred -CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCC----eEEEEecchhhcc----------
Confidence 7899999999987555567788999999999999999999999999999763 7999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.|++.+++|+ .+ |+||+|+||+++|++.........
T Consensus 123 -------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~--i~vn~v~PG~v~t~~~~~~~~~~~ 174 (223)
T 3uce_A 123 -------------------------VVANTYVKAAINAAIEATTKVLAKEL-AP--IRVNAISPGLTKTEAYKGMNADDR 174 (223)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TT--SEEEEEEECSBCSGGGTTSCHHHH
T ss_pred -------------------------CCCCchHHHHHHHHHHHHHHHHHHhh-cC--cEEEEEEeCCCcchhhhhcchhhH
Confidence 55678899999999999999999999 44 999999999999986544222211
Q ss_pred hh-hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~-~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ........+.+++.+|+|+|++++++++. ..++|+.+.+||+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~--~~~tG~~i~vdgG~ 220 (223)
T 3uce_A 175 DAMYQRTQSHLPVGKVGEASDIAMAYLFAIQN--SYMTGTVIDVDGGA 220 (223)
T ss_dssp HHHHHHHHHHSTTCSCBCHHHHHHHHHHHHHC--TTCCSCEEEESTTG
T ss_pred HHHHHHHhhcCCCCCccCHHHHHHHHHHHccC--CCCCCcEEEecCCe
Confidence 11 12233345667788999999999999984 46899999999864
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=273.64 Aligned_cols=247 Identities=21% Similarity=0.249 Sum_probs=201.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|++|||||+||||++++++|+++|+ +|++++|+ .+.++...+++...+.++.++.+|+++.++++++++++.+.
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 82 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAK 82 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999995 99999998 77777776666555678999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC---CCCCeEEEEecCCCCCCCcCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~---~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++++|+||||||.......+.+.+.+.|++.+++|+.+++.++++++|.|.+.. ...++||++||..+..
T Consensus 83 ~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------- 155 (258)
T 3afn_B 83 FGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT------- 155 (258)
T ss_dssp HSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHH-------
T ss_pred cCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhcc-------
Confidence 999999999999733334566778899999999999999999999999987532 0127999999987652
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
.+.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++......
T Consensus 156 ---------------------------~~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 207 (258)
T 3afn_B 156 ---------------------------GGGPGAGLYGAAKAFLHNVHKNWVDFH-TKDGVRFNIVSPGTVDTAFHADKTQ 207 (258)
T ss_dssp ---------------------------CCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSGGGTTCCH
T ss_pred ---------------------------CCCCCchHHHHHHHHHHHHHHHHHHhh-cccCeEEEEEeCCCcccccccccCH
Confidence 023567789999999999999999999 7779999999999999986533111
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC-CCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL-TKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~-~~~G~~~~~d~~~ 327 (358)
.... ......+..++.+|+|+|+.++++++++.. .++|+++..|+..
T Consensus 208 ~~~~---~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~~G~~~~v~gg~ 255 (258)
T 3afn_B 208 DVRD---RISNGIPMGRFGTAEEMAPAFLFFASHLASGYITGQVLDINGGQ 255 (258)
T ss_dssp HHHH---HHHTTCTTCSCBCGGGTHHHHHHHHCHHHHTTCCSEEEEESTTS
T ss_pred HHHH---HHhccCCCCcCCCHHHHHHHHHHHhCcchhccccCCEEeECCCc
Confidence 1111 111123445678999999999999987665 6899999999864
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=267.55 Aligned_cols=223 Identities=18% Similarity=0.173 Sum_probs=180.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||++|||++++++|+++|+ +|++++|+.+.++...+++ +.++.++.+|+++.++++++++++.+. +|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~---~d 74 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCL---SNNVGYRARDLASHQEVEQLFEQLDSI---PS 74 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTC---SSCCCEEECCTTCHHHHHHHHHSCSSC---CS
T ss_pred CEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHH---hhccCeEeecCCCHHHHHHHHHHHhhc---CC
Confidence 6899999999999999999999995 8999999998888777666 467899999999999999998876543 49
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++ ++||++||..+..
T Consensus 75 ~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~---~~iv~isS~~~~~--------------- 135 (230)
T 3guy_A 75 TVVHSAGSGYF-GLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP---VNVVMIMSTAAQQ--------------- 135 (230)
T ss_dssp EEEECCCCCCC-SCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CEEEEECCGGGTS---------------
T ss_pred EEEEeCCcCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CeEEEEeecccCC---------------
Confidence 99999998754 4566789999999999999999999999999998864 5999999998874
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.++...|+.||++++.|++.++.|+ .+.||+||+|+||+++|++.....
T Consensus 136 --------------------~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~--------- 185 (230)
T 3guy_A 136 --------------------PKAQESTYCAVKWAVKGLIESVRLEL-KGKPMKIIAVYPGGMATEFWETSG--------- 185 (230)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEECCC------------------
T ss_pred --------------------CCCCCchhHHHHHHHHHHHHHHHHHH-HhcCeEEEEEECCcccChHHHhcC---------
Confidence 55678899999999999999999999 788999999999999998653321
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKD 326 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~ 326 (358)
...+..++.+|+|+|+.++++++.+ ...++|+.+..+..
T Consensus 186 --~~~~~~~~~~~~dvA~~i~~l~~~~~~~~itg~~~~~~~~ 225 (230)
T 3guy_A 186 --KSLDTSSFMSAEDAALMIHGALANIGNGYVSDITVNREGH 225 (230)
T ss_dssp ---------CCCHHHHHHHHHHHCCEETTEEEEEEEEEC---
T ss_pred --CCCCcccCCCHHHHHHHHHHHHhCcCCCCccceeecCCCC
Confidence 1123456789999999999999844 44599999987764
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-36 Score=269.07 Aligned_cols=240 Identities=21% Similarity=0.200 Sum_probs=198.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEE-EEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTI-MHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~-~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|++|||||+||||++++++|+++|+ +|+++ +|+.+.++...+++...+.++.. +.+|+++.++++++++++.+.++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG 79 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999995 88887 89987777776666555566677 99999999999999999999889
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.++|.|++++ .++||++||..+..
T Consensus 80 ~~d~li~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~------------ 144 (245)
T 2ph3_A 80 GLDTLVNNAGITRD-TLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR--FGRIVNITSVVGIL------------ 144 (245)
T ss_dssp CCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH------------
T ss_pred CCCEEEECCCCCCC-CCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC--CCEEEEEeChhhcc------------
Confidence 99999999998743 3455778999999999999999999999999998764 37999999987763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++... ..+. .
T Consensus 145 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~~~~--~ 197 (245)
T 2ph3_A 145 -----------------------GNPGQANYVASKAGLIGFTRAVAKEY-AQRGITVNAVAPGFIETEMTER-LPQE--V 197 (245)
T ss_dssp -----------------------CCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHT-SCHH--H
T ss_pred -----------------------CCCCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEEEeecCcchhh-cCHH--H
Confidence 33567789999999999999999999 7779999999999999985432 1110 0
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+..++.+|+|+|+.++++++++....+|+++..+++.
T Consensus 198 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 242 (245)
T 2ph3_A 198 KEAYLKQIPAGRFGRPEEVAEAVAFLVSEKAGYITGQTLCVDGGL 242 (245)
T ss_dssp HHHHHHTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhCcccccccCCEEEECCCC
Confidence 111112233456789999999999999887777899999999864
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=272.05 Aligned_cols=229 Identities=18% Similarity=0.163 Sum_probs=188.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+.+ +.++.++++|+++.++++++++++.+.+
T Consensus 2 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 77 (281)
T 3m1a_A 2 SESAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAY---PDRAEAISLDVTDGERIDVVAADVLARY 77 (281)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCCceEEEeeCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999995 9999999987777666554 3578999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.|++.++++++|.|++++ .++||++||..+..
T Consensus 78 g~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~----------- 143 (281)
T 3m1a_A 78 GRVDVLVNNAGRTQV-GAFEETTERELRDLFELHVFGPARLTRALLPQMRERG--SGSVVNISSFGGQL----------- 143 (281)
T ss_dssp SCCSEEEECCCCEEE-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC-----------
T ss_pred CCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCEEEEEcCccccC-----------
Confidence 999999999998744 3566789999999999999999999999999998765 38999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch----
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---- 277 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---- 277 (358)
+.++...|+.||++++.|++.++.++ .+.||++++|+||++.|++......
T Consensus 144 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~ 198 (281)
T 3m1a_A 144 ------------------------SFAGFSAYSATKAALEQLSEGLADEV-APFGIKVLIVEPGAFRTNLFGKGAAYFSE 198 (281)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTCCCCEEECC
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCccccccccccccccCC
Confidence 55678899999999999999999999 7789999999999999987543211
Q ss_pred ---hhhhh---hcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 278 ---PLFRL---LFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 278 ---~~~~~---~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.+... ........+..++.+|+|+|++++++++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~a~~~~~~~~~ 240 (281)
T 3m1a_A 199 ENPAYAEKVGPTRQLVQGSDGSQPGDPAKAAAAIRLALDTEK 240 (281)
T ss_dssp BCTTTHHHHHHHHHHHHC-----CBCHHHHHHHHHHHHHSSS
T ss_pred cchhhHHHhHHHHHHHhhccCCCCCCHHHHHHHHHHHHhCCC
Confidence 00000 1111122334557899999999999998764
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=272.40 Aligned_cols=245 Identities=17% Similarity=0.174 Sum_probs=201.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|++|||||+||||++++++|+++|+ +|++++| +...++...+++...+.++.++.+|+++.++++++++++.+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 95 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 95 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 568999999999999999999999999995 8999998 77777777666665567889999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.+++++++.|.+ +++||++||..+..
T Consensus 96 ~~~~~d~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~----~~~iv~~sS~~~~~--------- 161 (274)
T 1ja9_A 96 HFGGLDFVMSNSGMEVW-CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR----GGRIILTSSIAAVM--------- 161 (274)
T ss_dssp HHSCEEEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE----EEEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCEEEEEcChHhcc---------
Confidence 99999999999998754 34557789999999999999999999999999873 27999999988762
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
.+.++...|+.||++++.+++.+++++ ..+||++++|+||++.|++.......
T Consensus 162 -------------------------~~~~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 215 (274)
T 1ja9_A 162 -------------------------TGIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHY 215 (274)
T ss_dssp -------------------------CSCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGT
T ss_pred -------------------------CCCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccchhcccccc
Confidence 133567789999999999999999999 77899999999999999854321000
Q ss_pred -------hh-hhhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 -------LF-RLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 -------~~-~~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. .... ......+.+++..|+|+|++++++++++....+|+.+..+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~i~~l~~~~~~~~~G~~~~v~gG 272 (274)
T 1ja9_A 216 APGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGG 272 (274)
T ss_dssp STTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred cccccccCchHHHHHHHHhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEEecCC
Confidence 00 0000 111122345678999999999999998777789999999875
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=269.22 Aligned_cols=244 Identities=18% Similarity=0.239 Sum_probs=196.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++|++|||||+||||+++++.|+++|+ +|++++|+...++...+++...+ .++.++.+|+++.++++++++++.
T Consensus 28 ~~l~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 106 (279)
T 1xg5_A 28 ERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 106 (279)
T ss_dssp GGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHH
Confidence 468999999999999999999999999995 99999999888777766665433 568899999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
+.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.+++.|++++.++++||++||..+...
T Consensus 107 ~~~g~iD~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~------- 178 (279)
T 1xg5_A 107 SQHSGVDICINNAGLARP-DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV------- 178 (279)
T ss_dssp HHHCCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-------
T ss_pred HhCCCCCEEEECCCCCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc-------
Confidence 988999999999998754 356678899999999999999999999999999876422379999999887620
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccc
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
.+.++...|+.||++++.|++.++.++ . ..||++++|+||++.|++.....
T Consensus 179 --------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~~i~v~~v~Pg~v~t~~~~~~~ 231 (279)
T 1xg5_A 179 --------------------------LPLSVTHFYSATKYAVTALTEGLRQEL-REAQTHIRATCISPGVVETQFAFKLH 231 (279)
T ss_dssp --------------------------CSCGGGHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEEEESCBCSSHHHHHT
T ss_pred --------------------------CCCCCCchhHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEEecCcccchhhhhhc
Confidence 144677899999999999999999998 5 78999999999999998632211
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
.... ..........++.+|+|+|+.++++++++....+|.+...
T Consensus 232 ~~~~---~~~~~~~~~~~~~~~~dvA~~i~~l~~~~~~~~~g~i~i~ 275 (279)
T 1xg5_A 232 DKDP---EKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQMR 275 (279)
T ss_dssp TTCH---HHHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEEEE
T ss_pred ccCh---hHHhhhcccccCCCHHHHHHHHHHHhcCCcceEeeeEEEc
Confidence 1000 0111112234578999999999999998876677765543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=264.88 Aligned_cols=239 Identities=18% Similarity=0.175 Sum_probs=193.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|++|||||+||||++++++|+++|+ +|++++|+.++++...+++. .+.++.+|+++.++++++++ .
T Consensus 3 ~~l~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~----~ 73 (244)
T 3d3w_A 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERALG----S 73 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHT----T
T ss_pred cccCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC----CCCEEEEeCCCHHHHHHHHH----H
Confidence 358899999999999999999999999995 99999999877776655542 45677999999999888776 5
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.+++++++.|.+++. .++||++||..+..
T Consensus 74 ~~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~-~~~iv~~sS~~~~~---------- 141 (244)
T 3d3w_A 74 VGPVDLLVNNAAVALL-QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQR---------- 141 (244)
T ss_dssp CCCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred cCCCCEEEECCccCCC-cchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC-CcEEEEeCchhhcc----------
Confidence 6789999999998643 34557788999999999999999999999999986531 37999999988763
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++....... .
T Consensus 142 -------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~-~ 194 (244)
T 3d3w_A 142 -------------------------AVTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSD-P 194 (244)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTTTHHHHSCS-T
T ss_pred -------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccccccchhhhccC-h
Confidence 44567899999999999999999999 77799999999999999854321110 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.+++.+|+|+|+.+++++++....++|+.+..|++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 241 (244)
T 3d3w_A 195 HKAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp THHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhhCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 00011122234466889999999999999987767899999999863
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=267.32 Aligned_cols=235 Identities=21% Similarity=0.273 Sum_probs=186.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
|++|++|||||+||||++++++|+++|+ ++|++++|+....+...+ + .+.++.++.+|+++.++++++++++.+.+
T Consensus 1 m~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~-~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (250)
T 1yo6_A 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS-I--KDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT-C--CCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh-c--cCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999993 399999999876654432 2 35688999999999999999999999888
Q ss_pred C--CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcC------CC---CCCeEEEEecCCCCC
Q 018331 122 R--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGSITGNT 190 (358)
Q Consensus 122 ~--~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~------~~---~~g~iv~vsS~~~~~ 190 (358)
+ ++|+||||||.......+.+.+.+.|++.+++|+.+++.++++++|.|.++ +. +.++||++||..+..
T Consensus 78 g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 157 (250)
T 1yo6_A 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCcccc
Confidence 7 899999999987623456678899999999999999999999999998764 20 037999999998764
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
..... ..+.++...|+.||++++.|++.+++++ .+.||++++|+||+++|+
T Consensus 158 ~~~~~----------------------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~ 208 (250)
T 1yo6_A 158 TDNTS----------------------------GSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp TTCCS----------------------------TTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC---
T ss_pred CCccc----------------------------ccccCCccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEcCCceecC
Confidence 21000 0111456789999999999999999999 778999999999999998
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+... ....+|+++|+.+++++++.....+|+|+.+|+..
T Consensus 209 ~~~~------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~ 247 (250)
T 1yo6_A 209 LGGK------------------NAALTVEQSTAELISSFNKLDNSHNGRFFMRNLKP 247 (250)
T ss_dssp ----------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEEE
T ss_pred CCCC------------------CCCCCHHHHHHHHHHHHhcccccCCCeEEEECCcC
Confidence 5422 13468999999999999988777899999999854
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=276.05 Aligned_cols=235 Identities=15% Similarity=0.192 Sum_probs=186.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC--ceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~--~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++++|++|||||+||||++++++|+++| ++|++++|+.++++...+.+...+. ++.++.+|+++.++++++++++.
T Consensus 4 ~~l~~k~vlVTGas~gIG~~la~~l~~~G-~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 82 (319)
T 3ioy_A 4 KDFAGRTAFVTGGANGVGIGLVRQLLNQG-CKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVE 82 (319)
T ss_dssp CCCTTCEEEEETTTSTHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEcCCchHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46889999999999999999999999999 5999999999888888777755444 79999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcC----CCCCCeEEEEecCCCCCCCcC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS----DYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~----~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+.++++|+||||||+... .++.+.+.++|++.+++|+.|++.++++++|.|.++ ....|+||++||..+..
T Consensus 83 ~~~g~id~lv~nAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~---- 157 (319)
T 3ioy_A 83 ARFGPVSILCNNAGVNLF-QPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL---- 157 (319)
T ss_dssp HHTCCEEEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC----
T ss_pred HhCCCCCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc----
Confidence 999999999999998754 466778999999999999999999999999999864 11248999999999874
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
+.++...|+.||+|+.+|++.++.|+ .+.||+|++|+||+|.|++...
T Consensus 158 -------------------------------~~~~~~~Y~aSKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 205 (319)
T 3ioy_A 158 -------------------------------AAGSPGIYNTTKFAVRGLSESLHYSL-LKYEIGVSVLCPGLVKSYIYAS 205 (319)
T ss_dssp -------------------------------CCSSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCBC------
T ss_pred -------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEcCeEccCcccc
Confidence 45677899999999999999999999 7789999999999999986543
Q ss_pred cchh--hhhhhcc-----hhHHh--hhcCccchhHHhhhhhhhhcCCC
Q 018331 275 EHIP--LFRLLFP-----PFQKY--ITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 275 ~~~~--~~~~~~~-----~~~~~--~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.... ....... ..... .....++|+++|+.++.++..+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~vA~~~~~al~~~~ 253 (319)
T 3ioy_A 206 DDIRPDALKGEVKPVDKTAVERLAGVHEFGMEPDVIGARVIEAMKANR 253 (319)
T ss_dssp -----------------------CCGGGSSBCHHHHHHHHHHHHHTTC
T ss_pred cccCchhhcccccchhHHHHHHHHHhhhcCCCHHHHHHHHHHHHHcCC
Confidence 2211 0000000 00000 00112799999999999987754
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=301.08 Aligned_cols=255 Identities=18% Similarity=0.159 Sum_probs=201.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++||++|||||++|||+++|+.|+++|+ +|++.+|+. ++...+++...+.++..+.+|++ ++.+++++++.+.
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~--~~~~~~~~~~~~~ 392 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGA-KVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVA--KDSEAIIKNVIDK 392 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSC--CHHHHHHHHHTTCEEEEECCCHH--HHHHHHHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCC-EEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChH--HHHHHHHHHHHHh
Confidence 468999999999999999999999999996 888888642 23444455444566777888884 5567888888888
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+||+||||||+... ..+.+++.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 393 ~G~iDiLVnNAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IVnisS~ag~~---------- 459 (604)
T 2et6_A 393 YGTIDILVNNAGILRD-RSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQ--FGRIINITSTSGIY---------- 459 (604)
T ss_dssp HSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCHHHHS----------
T ss_pred cCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECChhhcc----------
Confidence 9999999999998754 4677899999999999999999999999999998765 48999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||+|+.+|+++|+.|+ ++.||+||+|+||. +|++.......
T Consensus 460 -------------------------~~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~PG~-~T~m~~~~~~~-- 510 (604)
T 2et6_A 460 -------------------------GNFGQANYSSSKAGILGLSKTMAIEG-AKNNIKVNIVAPHA-ETAMTLSIMRE-- 510 (604)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECC-CCCC---------
T ss_pred -------------------------CCCCChhHHHHHHHHHHHHHHHHHHh-CccCeEEEEEcCCC-CCccccccCch--
Confidence 44678899999999999999999999 88899999999996 88864321100
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCccccc-------ccchhccCHHHHHHHHHHHHH
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFEN-------QLSQEASDVEKARKVWEISEK 353 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~-------~~~~~~~~~~~~~~~w~~~~~ 353 (358)
. .....+|+++|..++||+++.+. +||+++..||....... .......+.+.....|+...+
T Consensus 511 -~---------~~~~~~pe~vA~~v~~L~s~~~~-itG~~~~vdGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 579 (604)
T 2et6_A 511 -Q---------DKNLYHADQVAPLLVYLGTDDVP-VTGETFEIGGGWIGNTRWQRAKGAVSHDEHTTVEFIKEHLNEITD 579 (604)
T ss_dssp ------------CCSSCGGGTHHHHHHTTSTTCC-CCSCEEEEETTEEEEEEEEECCCEECCSSSCCHHHHHHHHHHHTC
T ss_pred -h---------hccCCCHHHHHHHHHHHhCCccC-CCCcEEEECCCeeEeeeeeccccccCCCCCCCHHHHHHHHHHHhc
Confidence 0 01345899999999999999887 99999999987432100 111233577777788876544
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=274.38 Aligned_cols=260 Identities=21% Similarity=0.285 Sum_probs=192.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCH-HHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASL-DSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~-~~i~~~~~~~~~ 119 (358)
.+++|++|||||++|||++++++|+++|+ +|++++|+..+++...+++... +.++.++.+|+++. ++++.+++.+.+
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~ 87 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKT 87 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999999999995 9999999998888888777655 35799999999998 999999999999
Q ss_pred cCCCccEEEEcccccCCC-----------------------------CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHH
Q 018331 120 SGRPLDVLVCNAAVYLPT-----------------------------AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL 170 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~-----------------------------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l 170 (358)
.++++|+||||||+.... ..+.+.+.++|++.+++|+.|++.++++++|+|
T Consensus 88 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l 167 (311)
T 3o26_A 88 HFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLL 167 (311)
T ss_dssp HHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred hCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhh
Confidence 999999999999986421 123456889999999999999999999999999
Q ss_pred hcCCCCCCeEEEEecCCCCCCCcCCCC-------CCCCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHH
Q 018331 171 KQSDYPSKRLIIVGSITGNTNTLAGNV-------PPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNML 242 (358)
Q Consensus 171 ~~~~~~~g~iv~vsS~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~ 242 (358)
++++ .++||++||..+..+...... +......++...................++ ++...|+.||+|+++
T Consensus 168 ~~~~--~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~ 245 (311)
T 3o26_A 168 QLSD--SPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNA 245 (311)
T ss_dssp TTSS--SCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHH
T ss_pred ccCC--CCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHH
Confidence 8765 489999999988753211000 000000000000000000000000111122 456789999999999
Q ss_pred HHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 243 TMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 243 ~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
|++.+++++ . +|+||+|+||+|+|++.... ...+++++++.+++++..+....+|.||.
T Consensus 246 ~~~~la~e~-~--~i~v~~v~PG~v~T~~~~~~------------------~~~~~~~~a~~~~~~~~~~~~~~~g~~~~ 304 (311)
T 3o26_A 246 YTRVLANKI-P--KFQVNCVCPGLVKTEMNYGI------------------GNYTAEEGAEHVVRIALFPDDGPSGFFYD 304 (311)
T ss_dssp HHHHHHHHC-T--TSEEEEECCCSBCSGGGTTC------------------CSBCHHHHHHHHHHHHTCCSSCCCSCEET
T ss_pred HHHHHHhhc-C--CceEEEecCCceecCCcCCC------------------CCCCHHHHHHHHHHHHhCCCCCCCceEec
Confidence 999999998 3 59999999999999854321 23589999999999998777667888886
Q ss_pred cCC
Q 018331 323 WNK 325 (358)
Q Consensus 323 ~d~ 325 (358)
...
T Consensus 305 ~s~ 307 (311)
T 3o26_A 305 CSE 307 (311)
T ss_dssp C--
T ss_pred ccc
Confidence 554
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=267.56 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=185.4
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
....++++|++|||||+||||++++++|+++|+ +|++++|+.+..+ ++ .++.++ +|+ .++++++++++
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~----~~----~~~~~~-~D~--~~~~~~~~~~~ 79 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLK----RS----GHRYVV-CDL--RKDLDLLFEKV 79 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHH----HT----CSEEEE-CCT--TTCHHHHHHHS
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHH----hh----CCeEEE-eeH--HHHHHHHHHHh
Confidence 334579999999999999999999999999995 9999999873322 22 256777 999 45666666654
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
. ++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ .++||++||..+..
T Consensus 80 ~----~iD~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~------- 145 (249)
T 1o5i_A 80 K----EVDILVLNAGGPKA-GFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVIS------- 145 (249)
T ss_dssp C----CCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-------
T ss_pred c----CCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CcEEEEEcchHhcC-------
Confidence 3 79999999998644 3566788999999999999999999999999998764 38999999998873
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ .+.||++|+|+||+++|++......
T Consensus 146 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 196 (249)
T 1o5i_A 146 ----------------------------PIENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLS 196 (249)
T ss_dssp ----------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSC
T ss_pred ----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCccCcccccch
Confidence 44677899999999999999999999 7789999999999999986432111
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ......+..++.+|+|+|+.+++|+++++..++|+++..||+.
T Consensus 197 ~~~~~--~~~~~~p~~~~~~~~dvA~~i~~l~s~~~~~~tG~~~~vdgG~ 244 (249)
T 1o5i_A 197 EEKKK--QVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGL 244 (249)
T ss_dssp HHHHH--HHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hhHHH--HHHhcCCCCCCcCHHHHHHHHHHHcCccccCCCCCEEEECCCc
Confidence 10000 1111234456789999999999999988878999999999875
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=269.50 Aligned_cols=223 Identities=12% Similarity=0.136 Sum_probs=187.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+-.+|++|||||++|||++++++|+++|+ +|++++|+..+. ....+.+|+++.++++++++++.+.+
T Consensus 19 ~~m~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~------------~~~~~~~d~~d~~~v~~~~~~~~~~~ 85 (251)
T 3orf_A 19 SHMSKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPN------------ADHSFTIKDSGEEEIKSVIEKINSKS 85 (251)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTT------------SSEEEECSCSSHHHHHHHHHHHHTTT
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccc------------cccceEEEeCCHHHHHHHHHHHHHHc
Confidence 34589999999999999999999999995 999999986432 12467899999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.........+.+.++|++.+++|+.+++.++++++|.|++. |+||++||..+..
T Consensus 86 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~isS~~~~~----------- 150 (251)
T 3orf_A 86 IKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG----GLFVLTGASAALN----------- 150 (251)
T ss_dssp CCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC----CEEEEEechhhcc-----------
Confidence 9999999999987654445677889999999999999999999999999763 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|++.|++.+++++. .+.||+|++|+||+|+|++.....
T Consensus 151 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~~~~---- 202 (251)
T 3orf_A 151 ------------------------RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNRKYM---- 202 (251)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHHHHC----
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchhhhc----
Confidence 556788999999999999999999982 378999999999999997542211
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcC-CCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~G~~~~~d~~~ 327 (358)
...+..++.+|+|+|+.+++++++ ....++|+.+..++..
T Consensus 203 -------~~~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~~i~v~~g~ 243 (251)
T 3orf_A 203 -------SDANFDDWTPLSEVAEKLFEWSTNSDSRPTNGSLVKFETKS 243 (251)
T ss_dssp -------TTSCGGGSBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred -------ccccccccCCHHHHHHHHHHHhcCccccCCcceEEEEecCC
Confidence 111234578999999999999999 6677999999877644
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=268.83 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=194.1
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCC--cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga--~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
...++++|++|||||++|||++++++|+++|+ ++|++++|+....+.. +++...+.++.++.+|+++.+++++++++
T Consensus 15 ~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~ 93 (267)
T 1sny_A 15 VPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVAD 93 (267)
T ss_dssp -----CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHH
T ss_pred cccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHH
Confidence 34578999999999999999999999999993 4999999987654433 23322346899999999999999999999
Q ss_pred HHhcCC--CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcC------CC---CCCeEEEEec
Q 018331 117 FRRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS------DY---PSKRLIIVGS 185 (358)
Q Consensus 117 ~~~~~~--~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~------~~---~~g~iv~vsS 185 (358)
+.+.++ ++|+||||||.......+.+.+.+++++.+++|+.+++.++++++|.|.++ .. ..++||++||
T Consensus 94 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 173 (267)
T 1sny_A 94 IEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS 173 (267)
T ss_dssp HHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred HHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEec
Confidence 998887 899999999987533456677899999999999999999999999999865 10 0379999999
Q ss_pred CCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC
Q 018331 186 ITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 265 (358)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG 265 (358)
..+.... .+.++...|+.||++++.|++.++.++ .+.||++++|+||
T Consensus 174 ~~~~~~~--------------------------------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg 220 (267)
T 1sny_A 174 ILGSIQG--------------------------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPG 220 (267)
T ss_dssp GGGCSTT--------------------------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCC
T ss_pred ccccccC--------------------------------CCCCCchHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEeCCc
Confidence 9876411 012356679999999999999999999 7789999999999
Q ss_pred cccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 266 CIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 266 ~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+|+|++... .+..+|+++|+.+++++.......+|+|+.+||...
T Consensus 221 ~v~t~~~~~------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~~~~~~g~~~ 265 (267)
T 1sny_A 221 WVKTDMGGS------------------SAPLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPL 265 (267)
T ss_dssp SBCSTTTCT------------------TCSBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBC
T ss_pred ceecCCCCC------------------CCCCCHHHHHHHHHHHHHhcCcCCCCcEEccCCcCc
Confidence 999985421 134699999999999999887779999999998653
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=287.77 Aligned_cols=238 Identities=18% Similarity=0.175 Sum_probs=194.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
..+++|++|||||++|||++++++|+++|+ +|++++|+.. .++...+.+ .+.++++|+++.++++++++++.
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga-~Vvl~~r~~~~~~l~~~~~~~-----~~~~~~~Dvtd~~~v~~~~~~~~ 282 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGA-TVVAIDVDGAAEDLKRVADKV-----GGTALTLDVTADDAVDKITAHVT 282 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHHH-----TCEEEECCTTSTTHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHH
Confidence 457899999999999999999999999996 8999998742 222333332 35689999999999999999999
Q ss_pred hcCCC-ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRP-LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~-iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.+++ ||+||||||+... ..+.+.+.++|++.+++|+.|++++++++++.|.++. .++||++||..+..
T Consensus 283 ~~~g~~id~lV~nAGv~~~-~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~--~g~iV~iSS~a~~~------- 352 (454)
T 3u0b_A 283 EHHGGKVDILVNNAGITRD-KLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGE--GGRVIGLSSMAGIA------- 352 (454)
T ss_dssp HHSTTCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCT--TCEEEEECCHHHHH-------
T ss_pred HHcCCCceEEEECCcccCC-CccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--CCEEEEEeChHhCC-------
Confidence 98876 9999999999755 4667889999999999999999999999999988764 48999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+++..|+.||+++++|+++++.++ .+.||+||+|+||+++|++.....
T Consensus 353 ----------------------------g~~g~~~YaasKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~- 402 (454)
T 3u0b_A 353 ----------------------------GNRGQTNYATTKAGMIGLAEALAPVL-ADKGITINAVAPGFIETKMTEAIP- 402 (454)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECSBCC--------
T ss_pred ----------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEcCcccChhhhhcc-
Confidence 45678899999999999999999999 778999999999999998653311
Q ss_pred hhhhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.. ..... ...+..+..+|+|+++.++||+++.+.++||+.+.+||..
T Consensus 403 ~~---~~~~~~~~~~l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG~ 450 (454)
T 3u0b_A 403 LA---TREVGRRLNSLFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQA 450 (454)
T ss_dssp ------CHHHHHSBTTSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSSB
T ss_pred hh---hHHHHHhhccccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCcc
Confidence 10 00111 1123345679999999999999998889999999999864
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=302.16 Aligned_cols=264 Identities=16% Similarity=0.144 Sum_probs=195.1
Q ss_pred CCccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec---------ChHHHHHHHHHhcCCCCceEEEEecCC
Q 018331 35 SSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR---------DFLKAERAAKSAGMAKENYTIMHLDLA 105 (358)
Q Consensus 35 ~~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r---------~~~~~~~~~~~~~~~~~~i~~~~~Dl~ 105 (358)
.++....+++||++|||||++|||+++|+.|+++|+ +|++++| +...++...+++...+..+ .+|++
T Consensus 9 ~~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~ 84 (613)
T 3oml_A 9 SSSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGA-KVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYN 84 (613)
T ss_dssp ------CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEC--------------CHHHHHHHHHHTTCCE---EECCC
T ss_pred cCcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeC
Confidence 344555689999999999999999999999999996 9999887 5566667777766544443 38999
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+.++++++++++.+.+++||+||||||+... ..+.+.+.++|++++++|+.|++.++++++|+|++++ .|+||++||
T Consensus 85 d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~--~g~IV~isS 161 (613)
T 3oml_A 85 SVIDGAKVIETAIKAFGRVDILVNNAGILRD-RSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQN--YGRIIMTSS 161 (613)
T ss_dssp CGGGHHHHHC----------CEECCCCCCCC-CCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--CEEEEEECC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCCCCCC-CCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCEEEEECC
Confidence 9999999999999999999999999999755 4677889999999999999999999999999999876 489999999
Q ss_pred CCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCC
Q 018331 186 ITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPG 265 (358)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG 265 (358)
..+.. +.++...|+.||+|+.+|+++++.|+ ++.||+||+|+||
T Consensus 162 ~a~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~la~e~-~~~gI~vn~v~Pg 205 (613)
T 3oml_A 162 NSGIY-----------------------------------GNFGQVNYTAAKMGLIGLANTVAIEG-ARNNVLCNVIVPT 205 (613)
T ss_dssp HHHHH-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC
T ss_pred HHHcC-----------------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEECC
Confidence 98874 44678899999999999999999999 7889999999999
Q ss_pred cccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccc----------cccc
Q 018331 266 CIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFE----------NQLS 335 (358)
Q Consensus 266 ~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~----------~~~~ 335 (358)
.+ |++....... . .....+|+++|..++||+++. ..++|+++.+||+..... .+.+
T Consensus 206 ~~-t~~~~~~~~~-------~-----~~~~~~pedvA~~v~~L~s~~-~~~tG~~i~vdGG~~~~~~~~~~~g~~~~~~~ 271 (613)
T 3oml_A 206 AA-SRMTEGILPD-------I-----LFNELKPKLIAPVVAYLCHES-CEDNGSYIESAAGWATKLHMVRGKGAVLRPSL 271 (613)
T ss_dssp -------CCCCCH-------H-----HHTTCCGGGTHHHHHHTTSTT-CCCCSCEEEEETTEEEEECCCBCCCCCSSSST
T ss_pred CC-Chhhhhccch-------h-----hhhcCCHHHHHHHHHHhcCCC-cCCCceEEEECCCeEEEEEEEecCCEEecCcc
Confidence 85 6554332111 0 123458999999999999988 679999999887643311 1111
Q ss_pred hhccCHHHHHHHHHHHHHHh
Q 018331 336 QEASDVEKARKVWEISEKLV 355 (358)
Q Consensus 336 ~~~~~~~~~~~~w~~~~~~~ 355 (358)
....+.|..++.|+.+.++.
T Consensus 272 ~~~~~~e~~~~~w~~i~~~~ 291 (613)
T 3oml_A 272 DDPVTIEYVKDVWSNVTDMS 291 (613)
T ss_dssp TSCCCHHHHHHTHHHHTCCT
T ss_pred ccCCCHHHHHHHHHHhhccc
Confidence 23357788899998876653
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=257.82 Aligned_cols=224 Identities=23% Similarity=0.253 Sum_probs=184.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+|++|||||+||||++++++|+++| +.|++++|+.+.++...+++. ++.++.+|+++.++++++++++.+.+++
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G-~~V~~~~r~~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKG-YRVGLMARDEKRLQALAAELE----GALPLPGDVREEGDWARAVAAMEEAFGE 78 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhh----hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999 499999999877776666553 6889999999999999999999998899
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.++|.|++++ .++||++||..+..
T Consensus 79 id~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--~~~iv~isS~~~~~------------- 142 (234)
T 2ehd_A 79 LSALVNNAGVGVM-KPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRG--GGTIVNVGSLAGKN------------- 142 (234)
T ss_dssp CCEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCTTTTS-------------
T ss_pred CCEEEECCCcCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC--CcEEEEECCchhcC-------------
Confidence 9999999998643 3556778999999999999999999999999998765 48999999998763
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
+.++...|+.||++++.+++.++.++ .+.||++++|+||+++|++... . +
T Consensus 143 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~-~-~----- 192 (234)
T 2ehd_A 143 ----------------------PFKGGAAYNASKFGLLGLAGAAMLDL-REANVRVVNVLPGSVDTGFAGN-T-P----- 192 (234)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEECC------------------
T ss_pred ----------------------CCCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCcccc-c-c-----
Confidence 44567899999999999999999999 7779999999999999985432 1 0
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..+ ...+|+|+|+.++++++++...++|+.+..++
T Consensus 193 -~~~------~~~~~~dvA~~~~~l~~~~~~~~~g~~~~~~~ 227 (234)
T 2ehd_A 193 -GQA------WKLKPEDVAQAVLFALEMPGHAMVSEIELRPT 227 (234)
T ss_dssp ------------CCHHHHHHHHHHHHHSCCSSCCCEEECCC-
T ss_pred -ccc------CCCCHHHHHHHHHHHhCCCcccccceEEEeec
Confidence 001 13699999999999999988888998876554
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=265.29 Aligned_cols=238 Identities=17% Similarity=0.172 Sum_probs=191.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++... +.++.++.+|+++.++++++++++.+.
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 83 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHH
Confidence 6789999999999999999999999995 9999999987777766666542 457899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++|+||||||... .+.|++.+++|+.+++.+++.++|+|.+.+. ..++||++||..+..
T Consensus 84 ~g~id~lv~~Ag~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------- 145 (267)
T 2gdz_A 84 FGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------- 145 (267)
T ss_dssp HSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------
T ss_pred cCCCCEEEECCCCCC---------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC---------
Confidence 999999999999752 3568999999999999999999999986521 138999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHH--HHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEF--HRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~l--a~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.+++++ +.++ .+.||+||+|+||+++|++......
T Consensus 146 --------------------------~~~~~~~Y~~sK~a~~~~~~~~ala~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~ 198 (267)
T 2gdz_A 146 --------------------------PVAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 198 (267)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred --------------------------CCCCCchHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEEecCcCcchhhhcccc
Confidence 4456778999999999999995 5777 7789999999999999985432110
Q ss_pred hh-hhhh---cchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PL-FRLL---FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~-~~~~---~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.. .... ...+ ...+..++.+|+|+|+.+++|+++.. .+|+.+..+++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~v~~l~s~~~--~~G~~~~v~gg~~ 252 (267)
T 2gdz_A 199 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDA--LNGAIMKITTSKG 252 (267)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCTT--CSSCEEEEETTTE
T ss_pred ccccchhhhHHHHHHHHhccccCCCHHHHHHHHHHHhcCcC--CCCcEEEecCCCc
Confidence 00 0000 0111 11222346799999999999999763 7999999888653
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=260.57 Aligned_cols=238 Identities=19% Similarity=0.215 Sum_probs=193.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++ ..+.++.+|+++.++++++++ .+
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~----~~ 74 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC----PGIEPVCVDLGDWDATEKALG----GI 74 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS----TTCEEEECCTTCHHHHHHHHT----TC
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc----cCCCcEEecCCCHHHHHHHHH----Hc
Confidence 57899999999999999999999999995 9999999987776655543 245677999999999888776 56
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|.+++. .++||++||..+..
T Consensus 75 ~~id~vi~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~~~iv~~sS~~~~~----------- 141 (244)
T 1cyd_A 75 GPVDLLVNNAALVIM-QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHV----------- 141 (244)
T ss_dssp CCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS-----------
T ss_pred CCCCEEEECCcccCC-CCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCC-CeEEEEEcchhhcC-----------
Confidence 789999999998753 34557789999999999999999999999999986531 27999999988763
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++....... ..
T Consensus 142 ------------------------~~~~~~~Y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~-~~ 195 (244)
T 1cyd_A 142 ------------------------TFPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSAD-PE 195 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTCC-HH
T ss_pred ------------------------CCCCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCccccccccC-HH
Confidence 44567889999999999999999998 77799999999999999854321100 00
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++..|+|+|++++++++++....+|+.+.+|+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG~ 241 (244)
T 1cyd_A 196 FARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGY 241 (244)
T ss_dssp HHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred HHHHHHhcCCccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCCc
Confidence 1111122234467889999999999999988778999999999863
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=275.50 Aligned_cols=258 Identities=13% Similarity=0.066 Sum_probs=198.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHH------------HHHHHHhcCCCCceEEEEecCCCHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKA------------ERAAKSAGMAKENYTIMHLDLASLDS 109 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~------------~~~~~~~~~~~~~i~~~~~Dl~~~~~ 109 (358)
..+|++|||||++|||+++++.|++ .|+ +|++++|+.... +...+.+...+.++..+.+|+++.++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~ 123 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEI 123 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHH
Confidence 5689999999999999999999999 997 888888764332 12233444456788999999999999
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccC------------CCCCC---------------------CCCCHHhHHhhhhhhh
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTNH 156 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~------------~~~~~---------------------~~~~~~~~~~~~~vN~ 156 (358)
++++++++.+.+|+||+||||||... ...++ .+.+.++|++++++|.
T Consensus 124 v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~ 203 (405)
T 3zu3_A 124 KQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMG 203 (405)
T ss_dssp HHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999741 11233 5789999999999999
Q ss_pred hHHH-HHHHHHHHH-HhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh--hh
Q 018331 157 LGHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 232 (358)
Q Consensus 157 ~~~~-~l~~~~~~~-l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 232 (358)
.+.+ .+++++++. |.+. +|+||++||+.+.. +.+.+ ..
T Consensus 204 ~~~~~~~~~~~~~~~m~~~---gG~IVniSSi~~~~-----------------------------------~~p~~~~~a 245 (405)
T 3zu3_A 204 GEDWQMWIDALLDAGVLAE---GAQTTAFTYLGEKI-----------------------------------THDIYWNGS 245 (405)
T ss_dssp SHHHHHHHHHHHHHTCEEE---EEEEEEEECCCCGG-----------------------------------GTTTTTTSH
T ss_pred hhHHHHHHHHHHHHhhhhC---CcEEEEEeCchhhC-----------------------------------cCCCccchH
Confidence 9998 778877754 5443 38999999998874 44555 78
Q ss_pred hHHhHHHHHHHHHHHHHhhcccC-CcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 233 YKDSKVCNMLTMQEFHRRFHEET-GIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 233 Y~~sK~al~~~~~~la~e~~~~~-gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
|+.||+++..|+++||.|+ ++. ||+||+|+||++.|++...- +........ ...+.++.-+|++|++.++||+++
T Consensus 246 Y~AaKaal~~ltrsLA~El-a~~~GIRVNaVaPG~i~T~~s~~i--p~~p~y~~~-l~~~mkr~G~~Ed~a~~i~~L~sd 321 (405)
T 3zu3_A 246 IGAAKKDLDQKVLAIRESL-AAHGGGDARVSVLKAVVSQASSAI--PMMPLYLSL-LFKVMKEKGTHEGCIEQVYSLYKD 321 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTTSCEEEEEECCCCCCHHHHTS--TTHHHHHHH-HHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CcccCeEEEEEEeCCCcCchhhcC--CCCcHHHHH-HHHHHhcCCCcHHHHHHHHHHHhc
Confidence 9999999999999999999 888 99999999999999854321 111111111 222456778999999999999988
Q ss_pred CCCCCCceeeecCCCCcccccccchhccCHHHHHH---HHH
Q 018331 312 PSLTKSGVYWSWNKDSASFENQLSQEASDVEKARK---VWE 349 (358)
Q Consensus 312 ~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~w~ 349 (358)
.+.|.-...|+.- ....+++..+.+-|.+ +|+
T Consensus 322 ---~l~~~~~~~D~~~---~~r~d~~e~~~~~q~~~~~~~~ 356 (405)
T 3zu3_A 322 ---SLCGDSPHMDQEG---RLRADYKELDPEVQNQVQQLWD 356 (405)
T ss_dssp ---TTSSSCCCBCTTS---CEECCHHHHCHHHHHHHHHHHH
T ss_pred ---cccCCCCCcCCCc---CCCCchhhcCHHHHHHHHHHHH
Confidence 4567766667654 2445566666655544 465
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=267.68 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=187.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG- 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~- 121 (358)
.++|++|||||++|||++++++|+++|+ +|++++|+....+ ....++.+|+++.++++++++++.+.+
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 73 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEA----------SASVIVKMTDSFTEQADQVTAEVGKLLG 73 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTS----------SEEEECCCCSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhcc----------CCcEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999995 9999999864321 235778899999999999999999988
Q ss_pred -CCccEEEEcccccCCCCCC-CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 -RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 -~~iD~lv~~ag~~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|+||||||..... .+ .+.+.++|++.+++|+.+++.++++++|+|++. ++||++||..+..
T Consensus 74 ~g~iD~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~----g~iv~isS~~~~~--------- 139 (241)
T 1dhr_A 74 DQKVDAILCVAGGWAGG-NAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG----GLLTLAGAKAALD--------- 139 (241)
T ss_dssp TCCEEEEEECCCCCCCB-CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS---------
T ss_pred CCCCCEEEEcccccCCC-CCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccC----CEEEEECCHHHcc---------
Confidence 7999999999987543 44 567889999999999999999999999999762 7999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ . +.||+||+|+||+++|++.....
T Consensus 140 --------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~~~gi~v~~v~PG~v~T~~~~~~~- 191 (241)
T 1dhr_A 140 --------------------------GTPGMIGYGMAKGAVHQLCQSLAGKN-SGMPSGAAAIAVLPVTLDTPMNRKSM- 191 (241)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHTSTT-SSCCTTCEEEEEEESCEECHHHHHHS-
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-ccCCCCeEEEEEecCcccCccccccC-
Confidence 45678899999999999999999999 6 78999999999999998542211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
+ . .. .....+|+|+|+.+++++++....++|+++.+||...
T Consensus 192 ~---~--~~-----~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g~~~ 232 (241)
T 1dhr_A 192 P---E--AD-----FSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVTTDG 232 (241)
T ss_dssp T---T--SC-----GGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEEETT
T ss_pred c---c--hh-----hccCCCHHHHHHHHHHHhcCCCcCccceEEEEeCCCC
Confidence 0 0 00 1235689999999999999888889999999988653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=298.57 Aligned_cols=230 Identities=16% Similarity=0.161 Sum_probs=190.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---------HHHHHHHHHhcCCCCceEEEEecCCCHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---------LKAERAAKSAGMAKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~ 111 (358)
.+++||++|||||++|||+++|+.|+++|+ +|++.+|+. +.++...+++...+.+. .+|+++.++++
T Consensus 4 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga-~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~---~~d~~d~~~~~ 79 (604)
T 2et6_A 4 VDFKDKVVIITGAGGGLGKYYSLEFAKLGA-KVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVA---VADYNNVLDGD 79 (604)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECC-----------CHHHHHHHHHHHTTCEE---EEECCCTTCHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCccccccccchHHHHHHHHHHHhcCCeE---EEEcCCHHHHH
Confidence 358899999999999999999999999996 898887754 45666666665444433 36888888899
Q ss_pred HHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 191 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~ 191 (358)
++++++.+.+|+||+||||||+... ..+.+++.++|++++++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 80 ~~v~~~~~~~G~iDiLVnNAGi~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~--~G~IVnisS~ag~~- 155 (604)
T 2et6_A 80 KIVETAVKNFGTVHVIINNAGILRD-ASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQK--YGRIVNTSSPAGLY- 155 (604)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CCEEEEECCHHHcC-
Confidence 9999999999999999999998754 4677899999999999999999999999999998765 38999999998874
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.++...|+.||+|+.+|+++|+.|+ ++.||+||+|+|| +.|++
T Consensus 156 ----------------------------------~~~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~Pg-~~T~m 199 (604)
T 2et6_A 156 ----------------------------------GNFGQANYASAKSALLGFAETLAKEG-AKYNIKANAIAPL-ARSRM 199 (604)
T ss_dssp ----------------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-CCCHH
T ss_pred ----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEccC-CcCcc
Confidence 44678899999999999999999999 8889999999998 57864
Q ss_pred ccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 272 LFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... + .. .....+|++++..++||+++. ..+||+.+..||..
T Consensus 200 ~~~~~-~------~~-----~~~~~~pe~vA~~v~~L~s~~-~~itG~~~~vdgG~ 242 (604)
T 2et6_A 200 TESIM-P------PP-----MLEKLGPEKVAPLVLYLSSAE-NELTGQFFEVAAGF 242 (604)
T ss_dssp HHTTS-C------HH-----HHTTCSHHHHHHHHHHHTSSS-CCCCSCEEEEETTE
T ss_pred ccccC-C------hh-----hhccCCHHHHHHHHHHHhCCc-ccCCCCEEEECCCe
Confidence 32111 0 00 012358999999999999988 77999999999874
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=263.97 Aligned_cols=222 Identities=18% Similarity=0.199 Sum_probs=191.0
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++++|++|||||+||||+++++.|+++|+ .|++++|+....+...++++..+.++.++.+|+++.++++++++++.+
T Consensus 26 ~~~l~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 104 (272)
T 1yb1_A 26 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 104 (272)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999999999995 999999998888877777766667899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.++|++.+++|+.+++.+++.++|.|.+++ .++||++||..+..
T Consensus 105 ~~g~iD~li~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~~~iv~isS~~~~~--------- 172 (272)
T 1yb1_A 105 EIGDVSILVNNAGVVYT-SDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHV--------- 172 (272)
T ss_dssp HTCCCSEEEECCCCCCC-CCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CC---------
T ss_pred HCCCCcEEEECCCcCCC-cchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CCEEEEEechhhcC---------
Confidence 99999999999998754 3455677899999999999999999999999998765 38999999998873
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.+++.++.++.. +.||++++|+||+++|++....
T Consensus 173 --------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~~-- 224 (272)
T 1yb1_A 173 --------------------------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP-- 224 (272)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT--
T ss_pred --------------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCccccc--
Confidence 4567889999999999999999999831 6799999999999999864211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
..+..++.+|+++|+.+++++..+.
T Consensus 225 -----------~~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 225 -----------STSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp -----------HHHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred -----------cccccCCCCHHHHHHHHHHHHHcCC
Confidence 1123467899999999999998754
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=263.29 Aligned_cols=234 Identities=17% Similarity=0.256 Sum_probs=184.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~ 118 (358)
++++|++|||||++|||++++++|+++|+..|++++|+.. .++...+.. .+.++.++.+|+++. ++++++++++.
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~ 79 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN--PKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC--TTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC--CCceEEEEEEecCCChHHHHHHHHHHH
Confidence 5789999999999999999999999999634888899853 233333222 145789999999998 99999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.++++|+||||||.. +.++|++.+++|+.+++.++++++|.|.++.. +.++||++||..+..
T Consensus 80 ~~~g~id~lv~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~------- 143 (254)
T 1sby_A 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------
T ss_pred HhcCCCCEEEECCccC---------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc-------
Confidence 9899999999999974 34678999999999999999999999976521 137999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.++ .+.||+|++|+||+++|++.....
T Consensus 144 ----------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~- 193 (254)
T 1sby_A 144 ----------------------------AIHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHTFN- 193 (254)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHSCC-
T ss_pred ----------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCCccCccccccc-
Confidence 44667899999999999999999998 667999999999999998643211
Q ss_pred hhhhhhcchhHH-hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~-~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ...+.. .....+.+|+|+|+.++++++. ..+|+++.+||+.
T Consensus 194 ~~~~~-~~~~~~~~~~~~~~~~~dvA~~i~~~~~~---~~~G~~~~v~gG~ 240 (254)
T 1sby_A 194 SWLDV-EPRVAELLLSHPTQTSEQCGQNFVKAIEA---NKNGAIWKLDLGT 240 (254)
T ss_dssp CGGGS-CTTHHHHHTTSCCEEHHHHHHHHHHHHHH---CCTTCEEEEETTE
T ss_pred hhhhh-hHHHHHHHhcCCCCCHHHHHHHHHHHHHc---CCCCCEEEEeCCc
Confidence 10000 011111 1112345899999999999962 5799999999863
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=276.02 Aligned_cols=246 Identities=13% Similarity=0.139 Sum_probs=187.5
Q ss_pred ccCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecChH-----------HHHHHHHHhcCCC--CceEEEEec--
Q 018331 41 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFL-----------KAERAAKSAGMAK--ENYTIMHLD-- 103 (358)
Q Consensus 41 ~~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~~-----------~~~~~~~~~~~~~--~~i~~~~~D-- 103 (358)
++++||++||||| ++|||++++++|+++|+ +|++++|+.. .++.. +++.... ....++.+|
T Consensus 5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~ 82 (315)
T 2o2s_A 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGA-RVALGTWPPVLGLFQKSLQSGRLDED-RKLPDGSLIEFAGVYPLDAA 82 (315)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTC-EEEEEECHHHHHHHHHHHHHTTTHHH-HBCTTSCBCCCSCEEECCTT
T ss_pred ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCC-EEEEEecccccchhhhhhhhhhhhhh-hhhhcccccccccccccccc
Confidence 3588999999999 89999999999999995 8999987641 11111 2221111 013444444
Q ss_pred ----------CC--------CHHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 104 ----------LA--------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 104 ----------l~--------~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
++ +.++++++++++.+.++++|+||||||... ....+.+.+.++|++.+++|+.+++.+++
T Consensus 83 ~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 162 (315)
T 2o2s_A 83 FDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQ 162 (315)
T ss_dssp CSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHH
Confidence 33 256899999999999999999999999763 23456678999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh-hhhHHhHHHHHHH
Q 018331 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 243 (358)
Q Consensus 165 ~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~al~~~ 243 (358)
+++|+|++. |+||++||..+.. +.+++ ..|+.||+|+.+|
T Consensus 163 ~~~~~m~~~----g~Iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaal~~l 203 (315)
T 2o2s_A 163 HFGPIMNEG----GSAVTLSYLAAER-----------------------------------VVPGYGGGMSSAKAALESD 203 (315)
T ss_dssp HHSTTEEEE----EEEEEEEEGGGTS-----------------------------------CCTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHhcC----CEEEEEecccccc-----------------------------------cCCCccHHHHHHHHHHHHH
Confidence 999999763 7999999998764 33444 4799999999999
Q ss_pred HHHHHHhhcc-cCCcEEEEecCCcccCCcccccch----hhhhhhcc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCC
Q 018331 244 MQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHI----PLFRLLFP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKS 317 (358)
Q Consensus 244 ~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~ 317 (358)
++.++.|+ . +.||+||+|+||+|+|++...... .+...... .....+..++.+|+|+|+.++||+++.+.+++
T Consensus 204 ~~~la~el-~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~~L~s~~~~~it 282 (315)
T 2o2s_A 204 TRTLAWEA-GQKYGVRVNAISAGPLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDDVGGAALFLLSPLARAVS 282 (315)
T ss_dssp HHHHHHHH-HHHTCCEEEEEEECCCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTSGGGTTCC
T ss_pred HHHHHHHh-CcccCeEEEEEecccccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHHHHHHHHHHhCchhccCc
Confidence 99999999 6 379999999999999985422110 00011111 11233556788999999999999998888899
Q ss_pred ceeeecCCCCc
Q 018331 318 GVYWSWNKDSA 328 (358)
Q Consensus 318 G~~~~~d~~~~ 328 (358)
|+++.+||+..
T Consensus 283 G~~i~vdGG~~ 293 (315)
T 2o2s_A 283 GVTLYVDNGLH 293 (315)
T ss_dssp SCEEEESTTGG
T ss_pred CCEEEECCCee
Confidence 99999999853
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=271.62 Aligned_cols=233 Identities=24% Similarity=0.242 Sum_probs=179.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-----hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-----~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
++++|++|||||++|||+++++.|+++|+ +|+++.|+ .+.++...+.+...+.++.++++|+++.+++++++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~ 80 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQ 80 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHH
Confidence 57789999999999999999999999995 99987775 4555555555555567899999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+.++++|+||||||+... .++.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 81 ~~~~~g~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~--~g~iV~isS~~~~~------ 151 (324)
T 3u9l_A 81 IIGEDGRIDVLIHNAGHMVF-GPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQK--HGLLIWISSSSSAG------ 151 (324)
T ss_dssp HHHHHSCCSEEEECCCCCBC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS------
T ss_pred HHHHcCCCCEEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEEecchhcc------
Confidence 99999999999999998754 3566889999999999999999999999999998765 48999999998763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc--
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-- 274 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-- 274 (358)
.+.++...|+.||+|++.|+++++.|+ .+.||+|++|+||++.|++...
T Consensus 152 ----------------------------~~~~~~~~Y~asKaa~~~~~~~la~el-~~~gI~v~~v~PG~v~t~~~~~~~ 202 (324)
T 3u9l_A 152 ----------------------------GTPPYLAPYFAAKAAMDAIAVQYAREL-SRWGIETSIIVPGAFTSGTNHFAH 202 (324)
T ss_dssp ----------------------------CCCSSCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCC---------
T ss_pred ----------------------------CCCCcchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEECCccccCchhhcc
Confidence 123557789999999999999999999 7889999999999998764321
Q ss_pred cchhhhhhh-------------cchhH--HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 275 EHIPLFRLL-------------FPPFQ--KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 275 ~~~~~~~~~-------------~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
...+..... ..... ........+|+++|++++.++..+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~vA~aiv~~~~~~~ 256 (324)
T 3u9l_A 203 SGVPDDHARQAEYEAGPNAGLGEEIKKAFAAIVPPDADVSLVADAIVRVVGTAS 256 (324)
T ss_dssp CBCCSCHHHHHHHHHTTTTTHHHHHHHHHHHTSCTTCCTHHHHHHHHHHHTSCT
T ss_pred cCCchHHHHHHhhccccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCC
Confidence 110100000 00000 0111122588999999999997764
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=277.74 Aligned_cols=246 Identities=15% Similarity=0.148 Sum_probs=163.6
Q ss_pred ccCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecCh-----------HHHH-----------HHHHHhcCCCC-
Q 018331 41 KTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDF-----------LKAE-----------RAAKSAGMAKE- 95 (358)
Q Consensus 41 ~~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~-----------~~~~-----------~~~~~~~~~~~- 95 (358)
+++++|++||||| ++|||+++++.|+++|+ +|++++|+. ..++ ...+++...+.
T Consensus 5 ~~l~~k~~lVTGa~~s~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2ptg_A 5 VDLRGKTAFVAGVADSNGYGWAICKLLRAAGA-RVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD 83 (319)
T ss_dssp CCCTTCEEEEECCCCTTSHHHHHHHHHHHTTC-EEEEEECHHHHHHHHC-------------------------------
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHCCC-EEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc
Confidence 3588999999999 89999999999999995 899988752 1111 11222222111
Q ss_pred --ceEEEEec------------CCC--------HHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhh
Q 018331 96 --NYTIMHLD------------LAS--------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSV 152 (358)
Q Consensus 96 --~i~~~~~D------------l~~--------~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~ 152 (358)
...++.+| +++ .++++++++++.+.++++|+||||||... ....+.+.+.++|++.+
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~ 163 (319)
T 2ptg_A 84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV 163 (319)
T ss_dssp -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence 12444444 332 45889999999999999999999999753 23456678999999999
Q ss_pred hhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh-h
Q 018331 153 GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-K 231 (358)
Q Consensus 153 ~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (358)
++|+.+++.++++++|+|++. |+||++||..+.. +.++. .
T Consensus 164 ~vN~~g~~~l~~~~~~~m~~~----g~Iv~isS~~~~~-----------------------------------~~~~~~~ 204 (319)
T 2ptg_A 164 SSSSYSFVSLLQHFLPLMKEG----GSALALSYIASEK-----------------------------------VIPGYGG 204 (319)
T ss_dssp HHHTHHHHHHHHHHGGGEEEE----EEEEEEEECC---------------------------------------------
T ss_pred hHhhHHHHHHHHHHHHHHhcC----ceEEEEecccccc-----------------------------------ccCccch
Confidence 999999999999999999763 7999999998763 34555 5
Q ss_pred hhHHhHHHHHHHHHHHHHhhccc-CCcEEEEecCCcccCCcccccch---h-hhhhhcc-hhHHhhhcCccchhHHhhhh
Q 018331 232 AYKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHI---P-LFRLLFP-PFQKYITKGYVSEDEAGKRL 305 (358)
Q Consensus 232 ~Y~~sK~al~~~~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~---~-~~~~~~~-~~~~~~~~~~~~~~~~a~~i 305 (358)
.|+.||+|+.+|++.++.|+ .+ .||+||+|+||+|+|++...... . +...... .....+..++.+|+|+|+.+
T Consensus 205 ~Y~asKaal~~l~~~la~el-~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~peevA~~v 283 (319)
T 2ptg_A 205 GMSSAKAALESDCRTLAFEA-GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDDVGRAA 283 (319)
T ss_dssp --------THHHHHHHHHHH-HHHHCCEEEEEEECCCC-------------------------------CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHh-ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHHHHHHH
Confidence 89999999999999999999 64 79999999999999986532110 0 0001101 11223556788999999999
Q ss_pred hhhhcCCCCCCCceeeecCCCC
Q 018331 306 AQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 306 ~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+||+++.+.++||+++.+||..
T Consensus 284 ~~L~s~~~~~itG~~i~vdGG~ 305 (319)
T 2ptg_A 284 LFLLSPLARAVTGATLYVDNGL 305 (319)
T ss_dssp HHHTSGGGTTCCSCEEEESTTC
T ss_pred HHHhCcccCCccCCEEEECCCc
Confidence 9999988888999999999975
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=276.97 Aligned_cols=257 Identities=16% Similarity=0.074 Sum_probs=195.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHH------------HHHHHhcCCCCceEEEEecCCCHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAE------------RAAKSAGMAKENYTIMHLDLASLDSV 110 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~------------~~~~~~~~~~~~i~~~~~Dl~~~~~i 110 (358)
.+|++|||||++|||+++++.|++ .|+ +|++++|+...++ ...+.+...+.++..+.+|+++.+++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v 138 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAAR 138 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHH
Confidence 589999999999999999999999 996 8999888754322 22344445567889999999999999
Q ss_pred HHHHHHHHhcC-CCccEEEEccccc------------CCCCCC---------------------CCCCHHhHHhhhhhhh
Q 018331 111 RQFVDTFRRSG-RPLDVLVCNAAVY------------LPTAKE---------------------PTFTAEGFELSVGTNH 156 (358)
Q Consensus 111 ~~~~~~~~~~~-~~iD~lv~~ag~~------------~~~~~~---------------------~~~~~~~~~~~~~vN~ 156 (358)
+++++++.+.+ |+||+||||||.. ....++ .+.+.++|++++++|.
T Consensus 139 ~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~ 218 (422)
T 3s8m_A 139 AQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMG 218 (422)
T ss_dssp HHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhc
Confidence 99999999999 9999999999872 111222 3578999999999999
Q ss_pred hHHH-HHHHHHHHH-HhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh--hh
Q 018331 157 LGHF-LLSRLLLDD-LKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 232 (358)
Q Consensus 157 ~~~~-~l~~~~~~~-l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 232 (358)
.+.+ .+++++++. |.+. +|+||++||+.+.. +.+.+ ..
T Consensus 219 ~~~~~~~~~a~~~~~m~~~---gG~IVniSSi~g~~-----------------------------------~~p~~~~~a 260 (422)
T 3s8m_A 219 GQDWELWIDALEGAGVLAD---GARSVAFSYIGTEI-----------------------------------TWPIYWHGA 260 (422)
T ss_dssp SHHHHHHHHHHHHTTCEEE---EEEEEEEEECCCGG-----------------------------------GHHHHTSHH
T ss_pred hhHHHHHHHHHHHHHHhhC---CCEEEEEeCchhhc-----------------------------------cCCCccchH
Confidence 9987 778887764 4443 38999999998874 44566 89
Q ss_pred hHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 233 YKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 233 Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
|++||+|+.+|+++||.|+ ++.||+||+|+||+|+|++...- +....... ....+.++.-+|++|++.++||+++.
T Consensus 261 Y~ASKaAl~~lTrsLA~El-a~~GIRVNaVaPG~i~T~~~~~i--p~~~~~~~-~~~~~m~r~G~pEdva~~v~~L~sd~ 336 (422)
T 3s8m_A 261 LGKAKVDLDRTAQRLNARL-AKHGGGANVAVLKSVVTQASAAI--PVMPLYIS-MVYKIMKEKGLHEGTIEQLDRLFRER 336 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGS--THHHHHHH-HHHHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh-CccCEEEEEEEcCCCcChhhhcC--CCChHHHH-HHHhhhcCCcChHHHHHHHHHHhcch
Confidence 9999999999999999999 88899999999999999865331 11111111 11224567789999999999999885
Q ss_pred CCCCC-ceeeecCCCCcccccccchhccCHHHHHHH
Q 018331 313 SLTKS-GVYWSWNKDSASFENQLSQEASDVEKARKV 347 (358)
Q Consensus 313 ~~~~~-G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 347 (358)
- ..+ |+....|+.- -...+++..+.+-|.++
T Consensus 337 l-y~~~~~~~~~d~~~---~~r~d~~e~~~~~q~~~ 368 (422)
T 3s8m_A 337 L-YRQDGQPAEVDEQN---RLRLDDWELRDDVQDAC 368 (422)
T ss_dssp T-TCTTCCCCCCCTTS---CEESCTTTTSHHHHHHH
T ss_pred h-hccCCCCcccCCCC---CCccchhhCCHHHHHHH
Confidence 3 332 5554455543 23445555555554443
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=267.69 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=186.2
Q ss_pred ccCCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHH-----------HHHHHHhcCCC--CceEEEEec--
Q 018331 41 KTLRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKA-----------ERAAKSAGMAK--ENYTIMHLD-- 103 (358)
Q Consensus 41 ~~l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~-----------~~~~~~~~~~~--~~i~~~~~D-- 103 (358)
+++++|++|||||+ +|||++++++|+++|+ +|++++|+.... +.. +++.... .....+.+|
T Consensus 4 ~~l~~k~~lVTGas~~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 81 (297)
T 1d7o_A 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTT
T ss_pred cccCCCEEEEECCCCCCChHHHHHHHHHHCCC-eEEEeeccccchhhhhhhhhhHhhhh-hhhcccccccccccccccee
Confidence 46889999999999 9999999999999995 899988763211 111 1111100 112344443
Q ss_pred ------CCC------------HHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 104 ------LAS------------LDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 104 ------l~~------------~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
+++ .++++++++++.+.++++|+||||||... ....+.+.+.++|++.+++|+.+++.+++
T Consensus 82 ~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~ 161 (297)
T 1d7o_A 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHH
Confidence 332 56889999999998999999999999753 12355678999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh-hhhHHhHHHHHHH
Q 018331 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA-KAYKDSKVCNMLT 243 (358)
Q Consensus 165 ~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~al~~~ 243 (358)
+++|+|++. |+||++||..+.. +.++. ..|+.||+|+++|
T Consensus 162 ~~~~~m~~~----g~iv~isS~~~~~-----------------------------------~~~~~~~~Y~asKaa~~~~ 202 (297)
T 1d7o_A 162 HFLPIMNPG----GASISLTYIASER-----------------------------------IIPGYGGGMSSAKAALESD 202 (297)
T ss_dssp HHGGGEEEE----EEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhccC----ceEEEEecccccc-----------------------------------CCCCcchHHHHHHHHHHHH
Confidence 999999763 7999999998764 33455 5899999999999
Q ss_pred HHHHHHhhccc-CCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 244 MQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 244 ~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
++.++.|+ .+ .||+||+|+||+++|++....... ...........+..++.+|+|+|+.++||+++.+.+++|+++.
T Consensus 203 ~~~la~e~-~~~~gi~vn~v~PG~v~T~~~~~~~~~-~~~~~~~~~~~p~~r~~~pedvA~~v~~l~s~~~~~itG~~i~ 280 (297)
T 1d7o_A 203 TRVLAFEA-GRKQNIRVNTISAGPLGSRAAKAIGFI-DTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIY 280 (297)
T ss_dssp HHHHHHHH-HHHHCCEEEEEEECCCBCCCSSCCSHH-HHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEE
T ss_pred HHHHHHHh-CcccCcEEEEEeccccccchhhhcccc-HHHHHHhhccCCCCCCCCHHHHHHHHHHHhCccccCCCCCEEE
Confidence 99999998 53 799999999999999965432100 0111111123344567899999999999999888889999999
Q ss_pred cCCCC
Q 018331 323 WNKDS 327 (358)
Q Consensus 323 ~d~~~ 327 (358)
+||..
T Consensus 281 vdgG~ 285 (297)
T 1d7o_A 281 VDNGL 285 (297)
T ss_dssp ESTTG
T ss_pred ECCCc
Confidence 99874
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-35 Score=263.44 Aligned_cols=222 Identities=13% Similarity=0.125 Sum_probs=185.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG- 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~- 121 (358)
|++|++|||||++|||++++++|+++| ++|++++|+.+..+ ....++.+|+++.++++++++++.+.+
T Consensus 1 m~~k~vlITGas~gIG~~~a~~l~~~G-~~V~~~~r~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 69 (236)
T 1ooe_A 1 MSSGKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQA----------DSNILVDGNKNWTEQEQSILEQTASSLQ 69 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTTS----------SEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecCccccc----------cccEEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 468899999999999999999999999 59999999864421 235778899999999999999999888
Q ss_pred -CCccEEEEcccccCCCCCC-CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 122 -RPLDVLVCNAAVYLPTAKE-PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 122 -~~iD~lv~~ag~~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|+||||||..... .+ .+.+.+.|++.+++|+.+++.++++++|+|++. ++||++||..+..
T Consensus 70 ~g~id~lv~~Ag~~~~~-~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~isS~~~~~--------- 135 (236)
T 1ooe_A 70 GSQVDGVFCVAGGWAGG-SASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG----GLLQLTGAAAAMG--------- 135 (236)
T ss_dssp TCCEEEEEECCCCCCCB-CTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS---------
T ss_pred CCCCCEEEECCcccCCC-CCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccC----CEEEEECchhhcc---------
Confidence 7999999999987543 44 567889999999999999999999999999763 7999999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+ . +.||+||+|+||+++|++.....
T Consensus 136 --------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~~~- 187 (236)
T 1ooe_A 136 --------------------------PTPSMIGYGMAKAAVHHLTSSLAAKD-SGLPDNSAVLTIMPVTLDTPMNRKWM- 187 (236)
T ss_dssp --------------------------CCTTBHHHHHHHHHHHHHHHHHHSTT-SSCCTTCEEEEEEESCBCCHHHHHHS-
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-cccCCCeEEEEEecCcccCcchhhcC-
Confidence 45678899999999999999999998 6 78999999999999998542211
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhh-cCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV-SDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~-~~~~~~~~G~~~~~d~~~ 327 (358)
+ . . ...+..+|+|+|+.+++++ ++....++|+++.+++..
T Consensus 188 ~---~--~-----~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~~~~v~gg~ 228 (236)
T 1ooe_A 188 P---N--A-----DHSSWTPLSFISEHLLKWTTETSSRPSSGALLKITTEN 228 (236)
T ss_dssp T---T--C-----CGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEEEEET
T ss_pred C---C--c-----cccccCCHHHHHHHHHHHHcCCCcccccccEEEEecCC
Confidence 0 0 0 0124568999999999555 777777999999988764
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=258.85 Aligned_cols=255 Identities=20% Similarity=0.237 Sum_probs=189.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++|++|||||+||||++++++|++ +|+ .|++++|+.+..+...+++...+.++.++.+|+++.++++++++++.+.+
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999999999999999 995 99999999888877777776556788999999999999999999999989
Q ss_pred CCccEEEEcccccCCCCCCCCCC-HHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC---
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFT-AEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV--- 197 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~-~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~--- 197 (358)
+++|+||||||..... . .+.+ .+.++..+++|+.+++.++++++|.|++. ++||++||..+..+.....+
T Consensus 81 g~id~li~~Ag~~~~~-~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~----g~iv~~sS~~~~~~~~~~~~~~~ 154 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKV-A-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRALKSCSPELQ 154 (276)
T ss_dssp SSEEEEEECCCCCCCT-T-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCHHHHHHHHTSCHHHH
T ss_pred CCCCEEEECCcccccC-C-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCCC----CEEEEECChhhhcccccCChhHH
Confidence 9999999999987442 2 2334 58999999999999999999999998763 69999999876531000000
Q ss_pred ----CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc----CCcEEEEecCCcccC
Q 018331 198 ----PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE----TGIAFASLYPGCIAT 269 (358)
Q Consensus 198 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~----~gI~v~~v~PG~v~t 269 (358)
....+..++......+............+++. ..|+.||++++.|++.+++++ .+ .||+|++|+||+|.|
T Consensus 155 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~-~~~~~~~~i~v~~v~PG~v~t 232 (276)
T 1wma_A 155 QKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPS-SAYGVTKIGVTVLSRIHARKL-SEQRKGDKILLNACCPGWVRT 232 (276)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCS-CHHHHHHHHHHHHHHHHHHHH-HHHCTTSCCEEEEEECCSBCS
T ss_pred hhccccccchhhhhhhhhhhhhhhcccccccCCCcc-chhHHHHHHHHHHHHHHHHHh-hcccCCCceEEEEecCCcccc
Confidence 00000000000000000000000000012222 789999999999999999998 55 699999999999999
Q ss_pred CcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC--CCCCceeeecC
Q 018331 270 TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS--LTKSGVYWSWN 324 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~--~~~~G~~~~~d 324 (358)
++... .++.+|+++|+.+++|++.+. ...+|+||..+
T Consensus 233 ~~~~~------------------~~~~~~~~~a~~~~~l~~~~~~~~~~~G~~~~~~ 271 (276)
T 1wma_A 233 DMAGP------------------KATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK 271 (276)
T ss_dssp TTTCT------------------TCSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred CcCCc------------------cccCChhHhhhhHhhhhcCcccccccCceEeccC
Confidence 85432 145799999999999998663 46899999844
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=259.91 Aligned_cols=217 Identities=20% Similarity=0.185 Sum_probs=156.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|++|||||++|||++++++|++ | ..|++++|+.+.++...+ ..++.++.+|+++..+ .+.+.+..+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g-~~v~~~~r~~~~~~~~~~-----~~~~~~~~~D~~~~~~-~~~~~~~~~~~ 73 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-D-HIVYALGRNPEHLAALAE-----IEGVEPIESDIVKEVL-EEGGVDKLKNL 73 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHT-----STTEEEEECCHHHHHH-TSSSCGGGTTC
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-C-CeEEEEeCCHHHHHHHHh-----hcCCcceecccchHHH-HHHHHHHHHhc
Confidence 57899999999999999999999998 8 489999999877665543 2468899999998876 44455555678
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|.|++++ |+||++||..+..
T Consensus 74 ~~id~lv~~Ag~~~~-~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~---g~iv~isS~~~~~----------- 138 (245)
T 3e9n_A 74 DHVDTLVHAAAVARD-TTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS---GCVIYINSGAGNG----------- 138 (245)
T ss_dssp SCCSEEEECC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEC-----------------
T ss_pred CCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC---CeEEEEcCccccc-----------
Confidence 899999999998754 3566778899999999999999999999999998764 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|++.|++.++.|+ .+.||+||+|+||++.|++........
T Consensus 139 ------------------------~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~-- 191 (245)
T 3e9n_A 139 ------------------------PHPGNTIYAASKHALRGLADAFRKEE-ANNGIRVSTVSPGPTNTPMLQGLMDSQ-- 191 (245)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------------
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCccCchhhhhhhhh--
Confidence 55678899999999999999999999 778999999999999998654321111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
....+..++.+|+|+|++++++++.+.
T Consensus 192 -----~~~~~~~~~~~p~dvA~~i~~l~~~~~ 218 (245)
T 3e9n_A 192 -----GTNFRPEIYIEPKEIANAIRFVIDAGE 218 (245)
T ss_dssp ---------CCGGGSCHHHHHHHHHHHHTSCT
T ss_pred -----hcccccccCCCHHHHHHHHHHHHcCCC
Confidence 111223457899999999999998764
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=265.33 Aligned_cols=228 Identities=20% Similarity=0.225 Sum_probs=172.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH---HHHHHHh---cCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSA---GMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~---~~~~~~~---~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++|++|||||++|||++++++|+++|+ +|++++|+...+ ....+.+ ...+.++.++.+|+++.++++++++++
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV 79 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH
Confidence 478999999999999999999999995 777776654322 2222222 123467899999999999999999987
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
. ++++|+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++ .++||++||..+..
T Consensus 80 ~--~g~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~--~g~IV~isS~~~~~------- 147 (327)
T 1jtv_A 80 T--EGRVDVLVCNAGLGLL-GPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLM------- 147 (327)
T ss_dssp T--TSCCSEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTS-------
T ss_pred h--cCCCCEEEECCCcCCC-CchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC--CCEEEEECCccccc-------
Confidence 3 5789999999998643 3556778999999999999999999999999998654 38999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+....|+.||++++.|++.++.|+ .+.||+|++|+||+|+|++......
T Consensus 148 ----------------------------~~~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~v~~v~PG~v~T~~~~~~~~ 198 (327)
T 1jtv_A 148 ----------------------------GLPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKVLG 198 (327)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-------C
T ss_pred ----------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCcccChHHhhhhh
Confidence 44567899999999999999999999 7789999999999999986533111
Q ss_pred hh----------hhhh-cchhH--HhhhcCc-cchhHHhhhhhhhhcCCC
Q 018331 278 PL----------FRLL-FPPFQ--KYITKGY-VSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 278 ~~----------~~~~-~~~~~--~~~~~~~-~~~~~~a~~i~~l~~~~~ 313 (358)
.. .... ..... ..+..++ .+|+++|+.++++++.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~l~~~~~ 248 (327)
T 1jtv_A 199 SPEEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPK 248 (327)
T ss_dssp CHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSS
T ss_pred cchhhhccCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHcCCC
Confidence 00 0000 00000 0112232 589999999999998753
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-33 Score=266.43 Aligned_cols=258 Identities=14% Similarity=0.034 Sum_probs=197.2
Q ss_pred CCCCeEEEEcCCCchHHH--HHHHHHhCCCcEEEEEecChHH------------HHHHHHHhcCCCCceEEEEecCCCHH
Q 018331 43 LRKGSVIITGASSGLGLA--TAKALAETGKWHIIMACRDFLK------------AERAAKSAGMAKENYTIMHLDLASLD 108 (358)
Q Consensus 43 l~~k~~lITGas~gIG~a--ia~~La~~Ga~~Vi~~~r~~~~------------~~~~~~~~~~~~~~i~~~~~Dl~~~~ 108 (358)
..+|++|||||++|||++ +++.|++.|+ +|++++|+... .+...+.+...+.++..+.+|+++.+
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~ 136 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEA-HTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNE 136 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCC-EEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCC-EEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHH
Confidence 689999999999999999 9999999996 99998886432 23334444445678899999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEcccccC------------CCCCC---------------------CCCCHHhHHhhhhhh
Q 018331 109 SVRQFVDTFRRSGRPLDVLVCNAAVYL------------PTAKE---------------------PTFTAEGFELSVGTN 155 (358)
Q Consensus 109 ~i~~~~~~~~~~~~~iD~lv~~ag~~~------------~~~~~---------------------~~~~~~~~~~~~~vN 155 (358)
+++++++++.+.+|+||+||||||... ...++ .+.+.++|+.++++|
T Consensus 137 ~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn 216 (418)
T 4eue_A 137 TKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVM 216 (418)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHh
Confidence 999999999999999999999999740 11122 356899999999999
Q ss_pred hhHHH-HHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchh--hh
Q 018331 156 HLGHF-LLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGA--KA 232 (358)
Q Consensus 156 ~~~~~-~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 232 (358)
..+.+ .+++++++.+.... +|+||++||..+.. +.+.+ ..
T Consensus 217 ~~~~~~~~~~~l~~~~~~~~--gg~IV~iSSi~~~~-----------------------------------~~p~~~~~a 259 (418)
T 4eue_A 217 GGEDWQEWCEELLYEDCFSD--KATTIAYSYIGSPR-----------------------------------TYKIYREGT 259 (418)
T ss_dssp SSHHHHHHHHHHHHTTCEEE--EEEEEEEECCCCGG-----------------------------------GTTTTTTSH
T ss_pred hHHHHHHHHHHHHHHhhhcC--CcEEEEEeCchhcC-----------------------------------CCCccccHH
Confidence 99988 77777776543332 38999999998764 44555 89
Q ss_pred hHHhHHHHHHHHHHHHHhhccc-CCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 233 YKDSKVCNMLTMQEFHRRFHEE-TGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 233 Y~~sK~al~~~~~~la~e~~~~-~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
|++||+|+..|+++|+.|+ ++ .||+||+|+||+|.|++...- +........+. .+.++.-++++|++.+.+|+++
T Consensus 260 Y~ASKaAL~~ltrsLA~EL-a~~~GIrVN~V~PG~v~T~~s~~i--p~~p~y~~~~~-~~mk~~G~~E~v~e~~~~L~sd 335 (418)
T 4eue_A 260 IGIAKKDLEDKAKLINEKL-NRVIGGRAFVSVNKALVTKASAYI--PTFPLYAAILY-KVMKEKNIHENCIMQIERMFSE 335 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHSCEEEEEECCCCCCHHHHTS--TTHHHHHHHHH-HHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh-CCccCeEEEEEECCcCcChhhhcC--CCCcHHHHHHH-HHHhhcCChHHHHHHHHHHhhc
Confidence 9999999999999999999 77 899999999999999854321 11111111111 1334556999999999999988
Q ss_pred CCCCCCceeeecCCCCcccccccchhccCHHHHHHH
Q 018331 312 PSLTKSGVYWSWNKDSASFENQLSQEASDVEKARKV 347 (358)
Q Consensus 312 ~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 347 (358)
. ..+|.++..|+.. ....+.+.++.+-|+++
T Consensus 336 ~--~~~g~~~~~D~~~---~~r~d~~e~~~~~q~~~ 366 (418)
T 4eue_A 336 K--IYSNEKIQFDDKG---RLRMDDLELRKDVQDEV 366 (418)
T ss_dssp T--TSSSSCCCCCTTS---CEESCTTTTCHHHHHHH
T ss_pred c--ccCCCccccCCCc---eeeCChhhcCHHHHHHH
Confidence 4 4589998888754 23456666666655544
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-32 Score=253.19 Aligned_cols=228 Identities=19% Similarity=0.217 Sum_probs=187.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+++|++|||||+||||++++++|+++|+ +|++++|+.+.++...+++...+ .++.++.+|+++.++++++++++.+
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 102 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGK 102 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHH
Confidence 358899999999999999999999999995 99999999888877766664433 3789999999999999999999999
Q ss_pred cCCCccEEEEc-ccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 120 SGRPLDVLVCN-AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 120 ~~~~iD~lv~~-ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
.++++|+|||| +|.... ...+.+.+++++.+++|+.|++.++++++|.|.++. ++||++||..+..
T Consensus 103 ~~g~iD~li~naag~~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~---g~iv~isS~~~~~-------- 169 (286)
T 1xu9_A 103 LMGGLDMLILNHITNTSL--NLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN---GSIVVVSSLAGKV-------- 169 (286)
T ss_dssp HHTSCSEEEECCCCCCCC--CCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEEEGGGTS--------
T ss_pred HcCCCCEEEECCccCCCC--ccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCC---CEEEEECCccccc--------
Confidence 88999999999 565432 334568899999999999999999999999987653 7999999998774
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCcccccch
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||++++.|++.++.|+. ...||++++|+||+++|++......
T Consensus 170 ---------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~~~~~~ 222 (286)
T 1xu9_A 170 ---------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVS 222 (286)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSC
T ss_pred ---------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhHHHhcc
Confidence 446778999999999999999999984 3579999999999999985422110
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
. .......+|+++|+.++..+.... .+.|+.+
T Consensus 223 -------~----~~~~~~~~~~~vA~~i~~~~~~~~---~~~~~~~ 254 (286)
T 1xu9_A 223 -------G----IVHMQAAPKEECALEIIKGGALRQ---EEVYYDS 254 (286)
T ss_dssp -------G----GGGGGCBCHHHHHHHHHHHHHTTC---SEEEECS
T ss_pred -------c----cccCCCCCHHHHHHHHHHHHhcCC---ceEEecc
Confidence 0 011245799999999999987642 4555554
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-34 Score=257.96 Aligned_cols=246 Identities=18% Similarity=0.192 Sum_probs=169.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+||||++++++|+++|+ +|++++|+.++++. . +++|+++.++++++++++ ++++|
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~------------~-~~~Dl~~~~~v~~~~~~~---~~~id 64 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA------------D-LSTAEGRKQAIADVLAKC---SKGMD 64 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC------------C-TTSHHHHHHHHHHHHTTC---TTCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc------------c-cccCCCCHHHHHHHHHHh---CCCCC
Confidence 6899999999999999999999995 99999998643210 1 678999999988877633 37899
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||..... +.|++.+++|+.+++.++++++|.|++++ .++||++||..+...... .....+
T Consensus 65 ~lv~~Ag~~~~~--------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--~g~iv~isS~~~~~~~~~-----~~~~~~ 129 (257)
T 1fjh_A 65 GLVLCAGLGPQT--------KVLGNVVSVNYFGATELMDAFLPALKKGH--QPAAVVISSVASAHLAFD-----KNPLAL 129 (257)
T ss_dssp EEEECCCCCTTC--------SSHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSSCGG-----GCTTHH
T ss_pred EEEECCCCCCCc--------ccHHHHHHHhhHHHHHHHHHHHHHHhhcC--CcEEEEECChhhhccccc-----cchhhh
Confidence 999999986311 23899999999999999999999998765 389999999987631100 000000
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-hhhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-PLFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~~~~~~~ 284 (358)
.... ...+.. ........+.++...|+.||++++.|++.+++++ .+.||+||+|+||+++|++...... .......
T Consensus 130 ~~~~-~~~~~~-~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 206 (257)
T 1fjh_A 130 ALEA-GEEAKA-RAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDPRYGESI 206 (257)
T ss_dssp HHHH-TCHHHH-HHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC-------------------
T ss_pred hhcc-cchhhh-hhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCccchhhccchhHHHHH
Confidence 0000 000000 0000000244578899999999999999999999 7789999999999999986543211 1111111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..+ ..+..++.+|+|+|+.++++++++...++|+++..||+.
T Consensus 207 ~~~-~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~~~~vdgG~ 248 (257)
T 1fjh_A 207 AKF-VPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp --C-CCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred Hhc-ccccCCCCCHHHHHHHHHHHhCchhcCCcCCEEEECCCc
Confidence 100 223456789999999999999988778999999999864
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=246.01 Aligned_cols=227 Identities=21% Similarity=0.179 Sum_probs=183.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||+||||++++++|+++| ++|++++|+.. . .++.++++|+++.++++++++++ +.++++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G-~~V~~~~r~~~-~-----------~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~ 67 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARG-YRVVVLDLRRE-G-----------EDLIYVEGDVTREEDVRRAVARA-QEEAPL 67 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHT-CEEEEEESSCC-S-----------SSSEEEECCTTCHHHHHHHHHHH-HHHSCE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCC-CEEEEEccCcc-c-----------cceEEEeCCCCCHHHHHHHHHHH-HhhCCc
Confidence 6899999999999999999999999 49999999863 1 35689999999999999999999 777899
Q ss_pred cEEEEcccccCCCCCCCCCC----HHhHHhhhhhhhhHHHHHHHHHHHHHhcCC---C-CCCeEEEEecCCCCCCCcCCC
Q 018331 125 DVLVCNAAVYLPTAKEPTFT----AEGFELSVGTNHLGHFLLSRLLLDDLKQSD---Y-PSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~----~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~---~-~~g~iv~vsS~~~~~~~~~~~ 196 (358)
|+||||||..... .+.+.+ .++|++.+++|+.+++.+++++++.|.++. . ..++||++||..+..
T Consensus 68 d~li~~ag~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~------ 140 (242)
T 1uay_A 68 FAVVSAAGVGLAE-KILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------ 140 (242)
T ss_dssp EEEEECCCCCCCC-CSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH------
T ss_pred eEEEEcccccCcc-cccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc------
Confidence 9999999987543 333333 449999999999999999999999998753 1 124999999998763
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||++++.+++.++.++ .+.||++++|+||++.|++.....
T Consensus 141 -----------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~ 190 (242)
T 1uay_A 141 -----------------------------GQIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLP 190 (242)
T ss_dssp -----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSC
T ss_pred -----------------------------CCCCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccCcchhhhccc
Confidence 34567899999999999999999999 777999999999999998643211
Q ss_pred hhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 277 IPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ......+. .++.+|+|+|+.+++++++ ...+|+.+.+|++.
T Consensus 191 ~~~~~---~~~~~~~~~~~~~~~~dva~~~~~l~~~--~~~~G~~~~v~gG~ 237 (242)
T 1uay_A 191 EKAKA---SLAAQVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGAL 237 (242)
T ss_dssp HHHHH---HHHTTCCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred hhHHH---HHHhhCCCcccCCCHHHHHHHHHHHhcC--CCCCCcEEEEcCCe
Confidence 11111 11111233 5678999999999999987 46799999999875
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.1e-31 Score=277.14 Aligned_cols=239 Identities=14% Similarity=0.088 Sum_probs=189.0
Q ss_pred ccCCCCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 41 ~~l~~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
++++||++|||||++| ||+++|++|+++|+ +|+++ +|+...++...+++.. .+.++.++.+|+++.+++++++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA-~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLV 550 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 550 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTC-EEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHH
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcC-EEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHH
Confidence 4689999999999998 99999999999996 78777 6776565555555522 2567899999999999999999
Q ss_pred HHHHhc-----CC-CccEEEEcccccCCCCCCCCCC--HHhHHhhhhhhhhHHHHHHHHH--HHHHhcCCCCCCeEEEEe
Q 018331 115 DTFRRS-----GR-PLDVLVCNAAVYLPTAKEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 115 ~~~~~~-----~~-~iD~lv~~ag~~~~~~~~~~~~--~~~~~~~~~vN~~~~~~l~~~~--~~~l~~~~~~~g~iv~vs 184 (358)
+++.+. ++ +||+||||||+......+.+.+ .+.|++++++|+.+++.+++++ +|.|.+++ .|+||++|
T Consensus 551 e~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krg--gGrIVnIS 628 (1688)
T 2pff_A 551 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILPMS 628 (1688)
T ss_dssp HHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSC--EEECCCCC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCC--CCEEEEEE
Confidence 999988 77 9999999999875432566777 8999999999999999999998 78887654 37999999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHH-HHHHHHhhcccCCcEEEEec
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFASLY 263 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~-~~~la~e~~~~~gI~v~~v~ 263 (358)
|..+.. + +...|+.||+|+++| ++.++.++ ++. |+||+|+
T Consensus 629 SiAG~~-----------------------------------G--g~saYaASKAAL~aLttrsLAeEl-a~~-IRVNaVa 669 (1688)
T 2pff_A 629 PNHGTF-----------------------------------G--GDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGAI 669 (1688)
T ss_dssp SCTTTS-----------------------------------S--CBTTHHHHHHHHTHHHHHTTTSSC-TTT-EECCCCC
T ss_pred ChHhcc-----------------------------------C--CchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEEE
Confidence 988764 2 456899999999999 77888887 554 9999999
Q ss_pred CCccc-CCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecC--CCC
Q 018331 264 PGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWN--KDS 327 (358)
Q Consensus 264 PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d--~~~ 327 (358)
||+++ |+++... .. ........+ .+..+|+|+|..++||+++. ...++|+.+.+| |+.
T Consensus 670 PG~V~TT~M~~~~-e~----~~~~l~~ip-lR~~sPEEVA~aIlFLaSd~sAs~ITGq~I~VDVDGG~ 731 (1688)
T 2pff_A 670 IGWTRGTGLMSAN-NI----IAEGIEKMG-VRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGL 731 (1688)
T ss_dssp CCCCCCCSSSCTT-TT----CSTTTSSSS-CCCCCCCTTHHHHHHHTSTTHHHHHTTSCCCCCCSCSG
T ss_pred ECcCcCCcccCCc-hH----HHHHHHhCC-CCCCCHHHHHHHHHHHhCCCccccccCcEEEEEcCCCe
Confidence 99999 5644321 00 011111111 14569999999999999987 456899988765 654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-30 Score=279.44 Aligned_cols=239 Identities=15% Similarity=0.111 Sum_probs=187.6
Q ss_pred ccCCCCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHh----cCCCCceEEEEecCCCHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAAKSA----GMAKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 41 ~~l~~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~----~~~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
++++||++|||||++| ||++++++|+++|+ +|+++ +|+...++...+++ ...+.++.++.+|+++.+++++++
T Consensus 671 m~l~gKvaLVTGASsGgIG~aIA~~La~~GA-~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 671 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGA-KVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp BCCTTCEEEEESCCSSSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHH
Confidence 3689999999999998 99999999999996 88887 67766665544443 334568999999999999999999
Q ss_pred HHHHhc-----CC-CccEEEEcccccCCCCCCCCCC--HHhHHhhhhhhhhHHHHHHHHH--HHHHhcCCCCCCeEEEEe
Q 018331 115 DTFRRS-----GR-PLDVLVCNAAVYLPTAKEPTFT--AEGFELSVGTNHLGHFLLSRLL--LDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 115 ~~~~~~-----~~-~iD~lv~~ag~~~~~~~~~~~~--~~~~~~~~~vN~~~~~~l~~~~--~~~l~~~~~~~g~iv~vs 184 (358)
+++.+. +| +||+||||||+......+.+.+ .++|+++|++|+.+++.+++++ +|.|.+++ .|+||++|
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~--~G~IVnIS 827 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRP--AQVILPMS 827 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCC--EEEEEEEC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCC--CCEEEEEc
Confidence 999988 66 9999999999875432556777 8999999999999999999988 67777653 37999999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHH-HHHHHHhhcccCCcEEEEec
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLT-MQEFHRRFHEETGIAFASLY 263 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~-~~~la~e~~~~~gI~v~~v~ 263 (358)
|..+.. + +...|+.||+|+++| ++.++.++ .+. |+||+|+
T Consensus 828 S~ag~~-----------------------------------g--g~~aYaASKAAL~~Lttr~lA~el-a~~-IrVNaV~ 868 (1887)
T 2uv8_A 828 PNHGTF-----------------------------------G--GDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGAI 868 (1887)
T ss_dssp SCTTCS-----------------------------------S--CBTTHHHHHHHGGGHHHHHHHSSC-TTT-EEEEEEE
T ss_pred ChHhcc-----------------------------------C--CCchHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEEE
Confidence 998774 2 456899999999999 89999998 555 9999999
Q ss_pred CCccc-CCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeec--CCCC
Q 018331 264 PGCIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSW--NKDS 327 (358)
Q Consensus 264 PG~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~--d~~~ 327 (358)
||+|+ |+++.... .. .......+ .++.+|+|+|..++||+++. ..+++|+.+.+ ||+.
T Consensus 869 PG~V~tT~m~~~~~-~~----~~~~~~~p-lr~~sPEEVA~avlfLaSd~~as~iTGq~I~VDVDGG~ 930 (1887)
T 2uv8_A 869 IGWTRGTGLMSANN-II----AEGIEKMG-VRTFSQKEMAFNLLGLLTPEVVELCQKSPVMADLNGGL 930 (1887)
T ss_dssp ECCEECC-----CC-TT----HHHHHTTS-CCCEEHHHHHHHHHGGGSHHHHHHHHHSCEEEEESCST
T ss_pred ecccccccccccch-hH----HHHHHhcC-CCCCCHHHHHHHHHHHhCCCccccccCcEEEEECCCCe
Confidence 99999 66543211 10 01111122 25569999999999999887 45688998865 4664
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=221.39 Aligned_cols=201 Identities=20% Similarity=0.212 Sum_probs=164.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+||||++++++|+++ +|++++|+....+...+++.. .++.+|+++.+++.+++++ ++++|
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~---~V~~~~r~~~~~~~~~~~~~~-----~~~~~D~~~~~~~~~~~~~----~~~id 68 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH---DLLLSGRRAGALAELAREVGA-----RALPADLADELEAKALLEE----AGPLD 68 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS---EEEEECSCHHHHHHHHHHHTC-----EECCCCTTSHHHHHHHHHH----HCSEE
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC---CEEEEECCHHHHHHHHHhccC-----cEEEeeCCCHHHHHHHHHh----cCCCC
Confidence 57999999999999999999988 899999998777777666542 7889999999999999886 57899
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... ..+.+.+.++|++.+++|+.+++.+++++ .+.+ .++||++||..+..
T Consensus 69 ~vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~--~~~iv~~sS~~~~~--------------- 126 (207)
T 2yut_A 69 LLVHAVGKAGR-ASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQK--GARAVFFGAYPRYV--------------- 126 (207)
T ss_dssp EEEECCCCCCC-BCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEE--EEEEEEECCCHHHH---------------
T ss_pred EEEECCCcCCC-CChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcC--CcEEEEEcChhhcc---------------
Confidence 99999998643 35567788999999999999999999988 2222 37999999988763
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+.++...|+.||++++.+++.+++++ .+.||++++|+||++.|++.....
T Consensus 127 --------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~t~~~~~~~--------- 176 (207)
T 2yut_A 127 --------------------QVPGFAAYAAAKGALEAYLEAARKEL-LREGVHLVLVRLPAVATGLWAPLG--------- 176 (207)
T ss_dssp --------------------SSTTBHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEECCCCBCSGGGGGGT---------
T ss_pred --------------------CCCCcchHHHHHHHHHHHHHHHHHHH-hhhCCEEEEEecCcccCCCccccC---------
Confidence 44567899999999999999999999 778999999999999998632211
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.+..++.+|+|+|+.++++++.+..
T Consensus 177 ----~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 177 ----GPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp ----SCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred ----CCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 1124678999999999999987643
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=220.65 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=165.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+||||++++++|+ +| ++|++++|+.. ++.+|+++.++++++++++ +++|+
T Consensus 5 ~vlVtGasg~iG~~~~~~l~-~g-~~V~~~~r~~~-----------------~~~~D~~~~~~~~~~~~~~----~~~d~ 61 (202)
T 3d7l_A 5 KILLIGASGTLGSAVKERLE-KK-AEVITAGRHSG-----------------DVTVDITNIDSIKKMYEQV----GKVDA 61 (202)
T ss_dssp EEEEETTTSHHHHHHHHHHT-TT-SEEEEEESSSS-----------------SEECCTTCHHHHHHHHHHH----CCEEE
T ss_pred EEEEEcCCcHHHHHHHHHHH-CC-CeEEEEecCcc-----------------ceeeecCCHHHHHHHHHHh----CCCCE
Confidence 79999999999999999999 99 59999999752 4789999999999998875 68999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||.... ..+.+.+.+.|++.+++|+.+++.+++++.+.|.+. ++||++||..+..
T Consensus 62 vi~~ag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~----~~iv~~sS~~~~~---------------- 120 (202)
T 3d7l_A 62 IVSATGSATF-SPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK----GSFTLTTGIMMED---------------- 120 (202)
T ss_dssp EEECCCCCCC-CCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE----EEEEEECCGGGTS----------------
T ss_pred EEECCCCCCC-CChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC----CEEEEEcchhhcC----------------
Confidence 9999997643 355677889999999999999999999999998652 6999999987763
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
+.++...|+.+|++++.+++.++.++ +.||++++|+||++.|++... .
T Consensus 121 -------------------~~~~~~~Y~~sK~~~~~~~~~~~~e~--~~gi~v~~v~pg~v~~~~~~~------~----- 168 (202)
T 3d7l_A 121 -------------------PIVQGASAAMANGAVTAFAKSAAIEM--PRGIRINTVSPNVLEESWDKL------E----- 168 (202)
T ss_dssp -------------------CCTTCHHHHHHHHHHHHHHHHHTTSC--STTCEEEEEEECCBGGGHHHH------G-----
T ss_pred -------------------CCCccHHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEecCccCCchhhh------h-----
Confidence 44667899999999999999999997 469999999999999974310 0
Q ss_pred hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 287 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
...+...+++++|+|+.+++++. ...+|+.+..|
T Consensus 169 -~~~~~~~~~~~~dva~~~~~~~~---~~~~G~~~~vd 202 (202)
T 3d7l_A 169 -PFFEGFLPVPAAKVARAFEKSVF---GAQTGESYQVY 202 (202)
T ss_dssp -GGSTTCCCBCHHHHHHHHHHHHH---SCCCSCEEEEC
T ss_pred -hhccccCCCCHHHHHHHHHHhhh---ccccCceEecC
Confidence 01123457899999999999883 24688877654
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=272.33 Aligned_cols=239 Identities=15% Similarity=0.094 Sum_probs=188.2
Q ss_pred ccCCCCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEE-ecChHHHHHHH----HHhcCCCCceEEEEecCCCHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSG-LGLATAKALAETGKWHIIMA-CRDFLKAERAA----KSAGMAKENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 41 ~~l~~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~----~~~~~~~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
++++||++|||||++| ||++++++|+++|+ +|+++ +|+...++... +++...+.++.++.||+++.+++.+++
T Consensus 648 m~L~gKvaLVTGASgGgIG~aIAr~LA~~GA-~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 648 LTFQGKHALMTGAGAGSIGAEVLQGLLSGGA-KVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp BCCTTCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHH
Confidence 4689999999999999 99999999999996 88887 46655554433 334444678999999999999999999
Q ss_pred HHHHhc---CC-CccEEEEcccccCCCCCCCCCC--HHhHHhhhhhhhhHHHHHHHH--HHHHHhcCCCCCCeEEEEecC
Q 018331 115 DTFRRS---GR-PLDVLVCNAAVYLPTAKEPTFT--AEGFELSVGTNHLGHFLLSRL--LLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 115 ~~~~~~---~~-~iD~lv~~ag~~~~~~~~~~~~--~~~~~~~~~vN~~~~~~l~~~--~~~~l~~~~~~~g~iv~vsS~ 186 (358)
+++.+. +| +||+||||||+......+.+.+ .+.|+++|++|+.+++.++++ +++.|.+++ .|+||++||.
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~--~G~IVnISS~ 804 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRP--AQVILPLSPN 804 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCC--EEECCEECSC
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCC--CCEEEEEcch
Confidence 999988 88 9999999999875432566778 899999999999999999977 678777653 3799999999
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHh-hcccCCcEEEEecCC
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR-FHEETGIAFASLYPG 265 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e-~~~~~gI~v~~v~PG 265 (358)
.+.. + +...|+.||+++++|++.++.+ + .+. |+||+|+||
T Consensus 805 ag~~-----------------------------------g--g~~aYaASKAAL~aLt~~laAeEl-a~~-IrVNaVaPG 845 (1878)
T 2uv9_A 805 HGTF-----------------------------------G--NDGLYSESKLALETLFNRWYSESW-GNY-LTICGAVIG 845 (1878)
T ss_dssp SSSS-----------------------------------S--CCSSHHHHHHHHTTHHHHHHHSTT-TTT-EEEEEEEEC
T ss_pred hhcc-----------------------------------C--CchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEEEec
Confidence 8874 1 3568999999999999877655 5 554 999999999
Q ss_pred ccc-CCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC-CCCCceeeec--CCCC
Q 018331 266 CIA-TTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSW--NKDS 327 (358)
Q Consensus 266 ~v~-t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~--d~~~ 327 (358)
+++ |++.... . .........+ .+..+|+++|..++||+++.. ..++|+.+.. ||+.
T Consensus 846 ~V~gT~m~~~~-~----~~~~~~~~~p-lr~~sPeEVA~avlfLaSd~a~s~iTGq~I~VDVDGG~ 905 (1878)
T 2uv9_A 846 WTRGTGLMSAN-N----LVAEGVEKLG-VRTFSQQEMAFNLLGLMAPAIVNLCQSDPVFADLNGGL 905 (1878)
T ss_dssp CBCCTTSCSHH-H----HTHHHHHTTT-CCCBCHHHHHHHHHHHHSHHHHHHHTTSCEEEEESCSG
T ss_pred ceecCcccccc-h----hhHHHHHhcC-CCCCCHHHHHHHHHHHhCCcccccccCcEEEEEcCCCc
Confidence 999 8865331 0 0111111222 245699999999999998876 5688998865 4654
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-29 Score=246.95 Aligned_cols=221 Identities=14% Similarity=0.130 Sum_probs=178.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecCh-------------HHHHHHHHHhcCCCCceEEEEecCCCHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDF-------------LKAERAAKSAGMAKENYTIMHLDLASLDS 109 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~-------------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~ 109 (358)
+++++|||||+||||++++++|+++|+.+|+++ +|+. ..++...+++...+.++.++.||++|.++
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~~ 329 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAEA 329 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHHH
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHHH
Confidence 588999999999999999999999997668888 8983 44456666666667889999999999999
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+.++++++. .+++||+||||||.... ..+.+.+.+.|++.+++|+.|++++.+++.+.+++++. .++||++||..+.
T Consensus 330 v~~~~~~i~-~~g~id~vVh~AGv~~~-~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~-~~~iV~~SS~a~~ 406 (525)
T 3qp9_A 330 AARLLAGVS-DAHPLSAVLHLPPTVDS-EPLAATDADALARVVTAKATAALHLDRLLREAAAAGGR-PPVLVLFSSVAAI 406 (525)
T ss_dssp HHHHHHTSC-TTSCEEEEEECCCCCCC-CCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----C-CCEEEEEEEGGGT
T ss_pred HHHHHHHHH-hcCCCcEEEECCcCCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCC-CCEEEEECCHHHc
Confidence 999999988 78999999999999765 46778999999999999999999999999999876531 3799999999988
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
. +.+++..|+.+|++++.|+ +++ ...||++++|+||+++|
T Consensus 407 ~-----------------------------------g~~g~~~YaaaKa~l~~lA----~~~-~~~gi~v~sI~pG~~~t 446 (525)
T 3qp9_A 407 W-----------------------------------GGAGQGAYAAGTAFLDALA----GQH-RADGPTVTSVAWSPWEG 446 (525)
T ss_dssp T-----------------------------------CCTTCHHHHHHHHHHHHHH----TSC-CSSCCEEEEEEECCBTT
T ss_pred C-----------------------------------CCCCCHHHHHHHHHHHHHH----HHH-HhCCCCEEEEECCcccc
Confidence 5 5578889999999988774 555 56799999999999988
Q ss_pred CcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 270 TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
+|....... ..+.. .....++|+++++.+.+++.....
T Consensus 447 gm~~~~~~~------~~~~~-~g~~~l~pee~a~~l~~~l~~~~~ 484 (525)
T 3qp9_A 447 SRVTEGATG------ERLRR-LGLRPLAPATALTALDTALGHGDT 484 (525)
T ss_dssp SGGGSSHHH------HHHHH-TTBCCBCHHHHHHHHHHHHHHTCS
T ss_pred ccccchhhH------HHHHh-cCCCCCCHHHHHHHHHHHHhCCCC
Confidence 765332111 11111 122457999999999999987654
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-29 Score=227.62 Aligned_cols=242 Identities=20% Similarity=0.182 Sum_probs=172.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+||||++++++|+++| ++|++++|+.+..+ . .+.+|+++.++++++++++ .+++|
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-------~------~~~~D~~~~~~~~~~~~~~---~~~~d 64 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAG-HTVIGIDRGQADIE-------A------DLSTPGGRETAVAAVLDRC---GGVLD 64 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSSSSEE-------C------CTTSHHHHHHHHHHHHHHH---TTCCS
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCC-CEEEEEeCChhHcc-------c------cccCCcccHHHHHHHHHHc---CCCcc
Confidence 589999999999999999999999 59999999864321 0 1678999999999888865 36899
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... .+.++..+++|+.+++.+++++++.|.+.+ .++||++||..++...... ..+.+
T Consensus 65 ~vi~~Ag~~~~--------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--~~~iv~~sS~~~~~~~~~~-----~~~~~ 129 (255)
T 2dkn_A 65 GLVCCAGVGVT--------AANSGLVVAVNYFGVSALLDGLAEALSRGQ--QPAAVIVGSIAATQPGAAE-----LPMVE 129 (255)
T ss_dssp EEEECCCCCTT--------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSS--SCEEEEECCGGGGSTTGGG-----CHHHH
T ss_pred EEEECCCCCCc--------chhHHHHHHHHhHHHHHHHHHHHHHhhhcC--CceEEEEeccccccccccc-----cchhh
Confidence 99999997632 134889999999999999999999998764 3799999999876411000 00000
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc-
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF- 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~- 284 (358)
.... ........ ......++...|+.||++++.+++.+++++ .+.||++++|+||.+.|++....... ...
T Consensus 130 ~~~~---~~~~~~~~-~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~~~~~~~~~~~---~~~~ 201 (255)
T 2dkn_A 130 AMLA---GDEARAIE-LAEQQGQTHLAYAGSKYAVTCLARRNVVDW-AGRGVRLNVVAPGAVETPLLQASKAD---PRYG 201 (255)
T ss_dssp HHHH---TCHHHHHH-HHHHHCCHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECCBCSHHHHHHHHC---TTTH
T ss_pred hhcc---cchhhhhh-hccccCCcchhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEcCCcccchhhhhcccc---hhhH
Confidence 0000 00000000 000001467799999999999999999998 67799999999999999854321010 000
Q ss_pred chhHHh--hhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKY--ITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~--~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...... +..++..++|+|++++++++++....+|+++..+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gg~ 246 (255)
T 2dkn_A 202 ESTRRFVAPLGRGSEPREVAEAIAFLLGPQASFIHGSVLFVDGGM 246 (255)
T ss_dssp HHHHSCCCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCCCcccceeeEEEecCCe
Confidence 111111 3456889999999999999987667899999988864
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-28 Score=239.35 Aligned_cols=227 Identities=17% Similarity=0.180 Sum_probs=179.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|||||+||||++++++|+++|+.+|++++|+. ...+...+++...+.++.++.||++|.+++.++++++.+.
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~- 317 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED- 317 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT-
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh-
Confidence 589999999999999999999999976899999974 3355666677767789999999999999999999988776
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||+......+.+.+.+.|++.+++|+.|++.+.+++.+.. .++||++||..+..
T Consensus 318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~------~~~iV~~SS~a~~~----------- 380 (496)
T 3mje_A 318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLD------LDAFVLFSSGAAVW----------- 380 (496)
T ss_dssp SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSC------CSEEEEEEEHHHHT-----------
T ss_pred CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccC------CCEEEEEeChHhcC-----------
Confidence 6899999999997444577789999999999999999999998876542 36999999999875
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|++++.|++.++ ..||++++|+||++.++++......
T Consensus 381 ------------------------g~~g~~~YaAaKa~ldala~~~~-----~~Gi~v~sV~pG~w~~~gm~~~~~~--- 428 (496)
T 3mje_A 381 ------------------------GSGGQPGYAAANAYLDALAEHRR-----SLGLTASSVAWGTWGEVGMATDPEV--- 428 (496)
T ss_dssp ------------------------TCTTCHHHHHHHHHHHHHHHHHH-----HTTCCCEEEEECEESSSCC---------
T ss_pred ------------------------CCCCcHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCcccCCccccChHH---
Confidence 45678899999999988887543 3599999999999988766543211
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
...+... ....++|++++..+.+++..+.....-.+++|+
T Consensus 429 --~~~l~~~-g~~~l~pe~~~~~l~~~l~~~~~~~~v~~ldw~ 468 (496)
T 3mje_A 429 --HDRLVRQ-GVLAMEPEHALGALDQMLENDDTAAAITLMDWE 468 (496)
T ss_dssp --CHHHHHT-TEEEECHHHHHHHHHHHHHHTCSEEEECEECHH
T ss_pred --HHHHHhc-CCCCCCHHHHHHHHHHHHcCCCceEEEEEccHH
Confidence 1111111 122469999999999999877665555555554
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=261.40 Aligned_cols=241 Identities=14% Similarity=0.121 Sum_probs=178.3
Q ss_pred cCCCCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 42 ~l~~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.++||++|||||++| ||+++|+.|++.|+ +|++++|+.+. ++.+.+++...+.++..+.+|+++.++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA-~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~ 2211 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGA-TVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVE 2211 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTC-EEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCC-EEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHH
Confidence 489999999999999 99999999999997 99999998655 566677777667789999999999999999999
Q ss_pred HHHh----cCCCccEEEEcccc----cCCCCCCCCCCHHhHHhh----hhhhhhHHHHHHHHHHHHHhcCCCC-CCeE-E
Q 018331 116 TFRR----SGRPLDVLVCNAAV----YLPTAKEPTFTAEGFELS----VGTNHLGHFLLSRLLLDDLKQSDYP-SKRL-I 181 (358)
Q Consensus 116 ~~~~----~~~~iD~lv~~ag~----~~~~~~~~~~~~~~~~~~----~~vN~~~~~~l~~~~~~~l~~~~~~-~g~i-v 181 (358)
++.+ .+|++|+||||||+ ........+.+.++|+.. +++|+.+++.+++++.+.|..+... ...+ +
T Consensus 2212 ~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~ 2291 (3089)
T 3zen_D 2212 WVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVL 2291 (3089)
T ss_dssp HHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred HHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEE
Confidence 9988 88999999999998 222122223344555554 9999999999999999999876421 1122 2
Q ss_pred EEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHh--hcccCCcEE
Q 018331 182 IVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRR--FHEETGIAF 259 (358)
Q Consensus 182 ~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e--~~~~~gI~v 259 (358)
+.|+..+. +++...|+.||+|+++|++.|+.| + + ++|+|
T Consensus 2292 ~~ss~~g~-------------------------------------~g~~~aYsASKaAl~~LtrslA~E~~~-a-~~IrV 2332 (3089)
T 3zen_D 2292 PGSPNRGM-------------------------------------FGGDGAYGEAKSALDALENRWSAEKSW-A-ERVSL 2332 (3089)
T ss_dssp EECSSTTS-------------------------------------CSSCSSHHHHGGGHHHHHHHHHHCSTT-T-TTEEE
T ss_pred ECCccccc-------------------------------------CCCchHHHHHHHHHHHHHHHHHhcccc-C-CCeEE
Confidence 22322221 234458999999999999999999 5 4 46999
Q ss_pred EEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCC-CCce--eeecCCCC
Q 018331 260 ASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGV--YWSWNKDS 327 (358)
Q Consensus 260 ~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~--~~~~d~~~ 327 (358)
|+|+||+|+|+.+........ ......+ .+..+|+|+|..++||+++.+.. .+|+ +++.+|..
T Consensus 2333 n~v~PG~v~tT~l~~~~~~~~----~~~~~~~-~r~~~PeEIA~avlfLaS~~a~~~~~~~p~~vdl~GG~ 2398 (3089)
T 3zen_D 2333 AHALIGWTKGTGLMGQNDAIV----SAVEEAG-VTTYTTDEMAAMLLDLCTVETKVAAAGAPVKVDLTGGL 2398 (3089)
T ss_dssp EEEECCCEECSTTTTTTTTTH----HHHGGGS-CBCEEHHHHHHHHHHTTSHHHHHHHHHSCEEEECSBSC
T ss_pred EEEeecccCCCcccccchhHH----HHHHhcC-CCCCCHHHHHHHHHHHhChhhhhHhcCCeEEEEcCCCc
Confidence 999999999544433221111 1111222 24559999999999999987654 4445 34555654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=241.15 Aligned_cols=226 Identities=18% Similarity=0.224 Sum_probs=179.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHH-hCCCcEEEEEecC---hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La-~~Ga~~Vi~~~r~---~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+|++|||||++|||++++++|+ ++|+.+|++++|+ .+.++...++++..+.++.+++||+++.++++++++++.+
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~ 608 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIPD 608 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence 58999999999999999999999 8998679999998 3456667777777788999999999999999999999887
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.+ +||+||||||+... ..+.+++.++|++.+++|+.|++++.+++.|.| +||++||..+..
T Consensus 609 ~~-~id~lVnnAGv~~~-~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l--------~iV~~SS~ag~~--------- 669 (795)
T 3slk_A 609 EH-PLTAVVHAAGVLDD-GVSESLTVERLDQVLRPKVDGARNLLELIDPDV--------ALVLFSSVSGVL--------- 669 (795)
T ss_dssp TS-CEEEEEECCCCCCC-CCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS--------EEEEEEETHHHH---------
T ss_pred hC-CCEEEEECCCcCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC--------EEEEEccHHhcC---------
Confidence 77 89999999999865 467789999999999999999999999986554 899999999885
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+++..|+++|++ ++.|++++ ...||++|+|+||++.|+++.......
T Consensus 670 --------------------------g~~g~~~YaAaka~----~~alA~~~-~~~Gi~v~sI~pG~v~t~g~~~~~~~~ 718 (795)
T 3slk_A 670 --------------------------GSGGQGNYAAANSF----LDALAQQR-QSRGLPTRSLAWGPWAEHGMASTLREA 718 (795)
T ss_dssp --------------------------TCSSCHHHHHHHHH----HHHHHHHH-HHTTCCEEEEEECCCSCCCHHHHHHHH
T ss_pred --------------------------CCCCCHHHHHHHHH----HHHHHHHH-HHcCCeEEEEECCeECcchhhccccHH
Confidence 55788999999975 66666666 567999999999999998764432111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
....+... ....++++++...+..++..+.......-+++
T Consensus 719 ---~~~~~~~~-g~~~l~~~e~~~~~~~~l~~~~~~~~~~~~d~ 758 (795)
T 3slk_A 719 ---EQDRLARS-GLLPISTEEGLSQFDAACGGAHTVVAPVRFSR 758 (795)
T ss_dssp ---HHHHHHHT-TBCCCCHHHHHHHHHHHHTSSCSSCCCCCBCC
T ss_pred ---HHHHHHhc-CCCCCCHHHHHHHHHHHHhCCCcEEEEEecCH
Confidence 11111111 22356888888888888876655433333333
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-25 Score=195.77 Aligned_cols=216 Identities=14% Similarity=0.148 Sum_probs=152.9
Q ss_pred CcCCCCccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCce-EEEEecCCCHHH
Q 018331 31 AVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY-TIMHLDLASLDS 109 (358)
Q Consensus 31 ~~~~~~~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i-~~~~~Dl~~~~~ 109 (358)
+.+...+...+++++|++|||||+|+||++++++|+++| +.|++++|+.++++.... .++ .++.+|++
T Consensus 7 ~~~~~~~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~------~~~~~~~~~Dl~---- 75 (236)
T 3e8x_A 7 HHHHSSGRENLYFQGMRVLVVGANGKVARYLLSELKNKG-HEPVAMVRNEEQGPELRE------RGASDIVVANLE---- 75 (236)
T ss_dssp --------------CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSGGGHHHHHH------TTCSEEEECCTT----
T ss_pred cccccccccccCcCCCeEEEECCCChHHHHHHHHHHhCC-CeEEEEECChHHHHHHHh------CCCceEEEcccH----
Confidence 334444555678999999999999999999999999999 599999999877665433 267 89999999
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+.+.+.++++|+||||||... .+.++..+++|+.++..+++++... + .++||++||..+.
T Consensus 76 -----~~~~~~~~~~D~vi~~ag~~~---------~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~ 135 (236)
T 3e8x_A 76 -----EDFSHAFASIDAVVFAAGSGP---------HTGADKTILIDLWGAIKTIQEAEKR----G--IKRFIMVSSVGTV 135 (236)
T ss_dssp -----SCCGGGGTTCSEEEECCCCCT---------TSCHHHHHHTTTHHHHHHHHHHHHH----T--CCEEEEECCTTCS
T ss_pred -----HHHHHHHcCCCEEEECCCCCC---------CCCccccchhhHHHHHHHHHHHHHc----C--CCEEEEEecCCCC
Confidence 233444568999999999753 2457889999999999999998543 2 2699999996654
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
... ..+ .....|+.+|++++.+++ ..||++++|+||++.+
T Consensus 136 ~~~-------------------------------~~~-~~~~~Y~~sK~~~e~~~~--------~~gi~~~~lrpg~v~~ 175 (236)
T 3e8x_A 136 DPD-------------------------------QGP-MNMRHYLVAKRLADDELK--------RSSLDYTIVRPGPLSN 175 (236)
T ss_dssp CGG-------------------------------GSC-GGGHHHHHHHHHHHHHHH--------HSSSEEEEEEECSEEC
T ss_pred CCC-------------------------------CCh-hhhhhHHHHHHHHHHHHH--------HCCCCEEEEeCCcccC
Confidence 200 001 467799999999888765 2589999999999999
Q ss_pred CcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 270 TGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
++........ .. . .....++.++|+|++++++++++. ..|+.+..+++
T Consensus 176 ~~~~~~~~~~-~~----~--~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~v~~~ 223 (236)
T 3e8x_A 176 EESTGKVTVS-PH----F--SEITRSITRHDVAKVIAELVDQQH--TIGKTFEVLNG 223 (236)
T ss_dssp SCCCSEEEEE-SS----C--SCCCCCEEHHHHHHHHHHHTTCGG--GTTEEEEEEEC
T ss_pred CCCCCeEEec-cC----C--CcccCcEeHHHHHHHHHHHhcCcc--ccCCeEEEeCC
Confidence 8543322110 00 0 012457899999999999998865 57877777654
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=197.74 Aligned_cols=198 Identities=18% Similarity=0.151 Sum_probs=154.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
|++|++|||||+|+||++++++|+++| +.|++++|+..+.. ..++.++.+|+++.+++.++++
T Consensus 1 m~~k~vlVTGasg~IG~~la~~L~~~G-~~V~~~~r~~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~------- 63 (267)
T 3rft_A 1 MAMKRLLVTGAAGQLGRVMRERLAPMA-EILRLADLSPLDPA---------GPNEECVQCDLADANAVNAMVA------- 63 (267)
T ss_dssp CCEEEEEEESTTSHHHHHHHHHTGGGE-EEEEEEESSCCCCC---------CTTEEEEECCTTCHHHHHHHHT-------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCcccc---------CCCCEEEEcCCCCHHHHHHHHc-------
Confidence 356899999999999999999999999 59999999863322 4678999999999999988877
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.. +.+.|++.+++|+.|++.+++++.+. + .++||++||..++.....
T Consensus 64 ~~D~vi~~Ag~~---------~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~g~~~~-------- 120 (267)
T 3rft_A 64 GCDGIVHLGGIS---------VEKPFEQILQGNIIGLYNLYEAARAH----G--QPRIVFASSNHTIGYYPQ-------- 120 (267)
T ss_dssp TCSEEEECCSCC---------SCCCHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEEEEGGGGTTSBT--------
T ss_pred CCCEEEECCCCc---------CcCCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEcchHHhCCCCC--------
Confidence 699999999984 23457899999999999999999442 2 379999999877631110
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
....++..+..+...|+.||++.+.+++.++.++ |+++++|+||.+.++......
T Consensus 121 ---------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~----g~~~~~vr~~~v~~~~~~~~~------ 175 (267)
T 3rft_A 121 ---------------TERLGPDVPARPDGLYGVSKCFGENLARMYFDKF----GQETALVRIGSCTPEPNNYRM------ 175 (267)
T ss_dssp ---------------TSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECBCSSSCCSTTH------
T ss_pred ---------------CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCeEEEEEeecccCCCCCCCc------
Confidence 1122233455667889999999999999999886 899999999999886332211
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
...++.++++++.+..++..+..
T Consensus 176 ---------~~~~~~~~d~a~~~~~~~~~~~~ 198 (267)
T 3rft_A 176 ---------LSTWFSHDDFVSLIEAVFRAPVL 198 (267)
T ss_dssp ---------HHHBCCHHHHHHHHHHHHHCSCC
T ss_pred ---------eeeEEcHHHHHHHHHHHHhCCCC
Confidence 11346788888888888876543
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-25 Score=216.62 Aligned_cols=216 Identities=19% Similarity=0.229 Sum_probs=167.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH---HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~---~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|||||+||||++++++|+++|+.+|++++|+.. .++...+++...+.++.++.||++|.+++.++++.+ ..
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i-~~ 303 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI-GD 303 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS-CT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH-Hh
Confidence 57899999999999999999999999756999999864 345555666656678999999999999999999988 55
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++++|+||||||.... ..+.+.+.+.+++.+++|+.|++++.+++.+ .. .++||++||..+..
T Consensus 304 ~g~ld~VIh~AG~~~~-~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~~--~~~~V~~SS~a~~~---------- 366 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDD-GTVDTLTGERIERASRAKVLGARNLHELTRE----LD--LTAFVLFSSFASAF---------- 366 (486)
T ss_dssp TSCEEEEEECCCCCCC-CCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SC--CSEEEEEEEHHHHT----------
T ss_pred cCCCcEEEECCccCCC-CccccCCHHHHHHHHHHHHHHHHHHHHHhCc----CC--CCEEEEEcChHhcC----------
Confidence 6899999999998754 3566789999999999999999999988743 22 37999999998764
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.+|++++.|++.++ ..|+++++|+||++.++++..... .
T Consensus 367 -------------------------g~~g~~~Yaaaka~l~~la~~~~-----~~gi~v~~i~pG~~~~~gm~~~~~--~ 414 (486)
T 2fr1_A 367 -------------------------GAPGLGGYAPGNAYLDGLAQQRR-----SDGLPATAVAWGTWAGSGMAEGPV--A 414 (486)
T ss_dssp -------------------------CCTTCTTTHHHHHHHHHHHHHHH-----HTTCCCEEEEECCBC------------
T ss_pred -------------------------CCCCCHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCeeCCCcccchhH--H
Confidence 44567899999999988876543 359999999999998875433211 0
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
.. +.. .....++++++++.+..++.....
T Consensus 415 ~~----~~~-~g~~~i~~e~~a~~l~~~l~~~~~ 443 (486)
T 2fr1_A 415 DR----FRR-HGVIEMPPETACRALQNALDRAEV 443 (486)
T ss_dssp ------CTT-TTEECBCHHHHHHHHHHHHHTTCS
T ss_pred HH----HHh-cCCCCCCHHHHHHHHHHHHhCCCC
Confidence 00 100 112357999999999999986543
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=211.94 Aligned_cols=211 Identities=20% Similarity=0.193 Sum_probs=167.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH---HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~---~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|||||+||||++++++|+++|+.+|++++|+.. ..+...+++...+.++.++.||++|.+++.++++.
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~---- 333 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTA---- 333 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHH----
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhc----
Confidence 57899999999999999999999999657999999863 34566666766677899999999999999998886
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.... ..+.+.+.+.++..+++|+.|++++.+++.+. . . .++||++||..+..
T Consensus 334 -~~ld~VVh~AGv~~~-~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~-~--~--~~~~V~~SS~a~~~---------- 396 (511)
T 2z5l_A 334 -YPPNAVFHTAGILDD-AVIDTLSPESFETVRGAKVCGAELLHQLTADI-K--G--LDAFVLFSSVTGTW---------- 396 (511)
T ss_dssp -SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC-T--T--CCCEEEEEEGGGTT----------
T ss_pred -CCCcEEEECCcccCC-cccccCCHHHHHHHHHHHHHHHHHHHHHHhhc-c--C--CCEEEEEeCHHhcC----------
Confidence 589999999998754 35667899999999999999999998876422 1 1 37999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc-cCCcccccchhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI-ATTGLFREHIPL 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v-~t~~~~~~~~~~ 279 (358)
+.+++..|+.+|++++.|++.++ ..||++++|+||++ .|.|. .....
T Consensus 397 -------------------------g~~g~~~YaaaKa~ld~la~~~~-----~~gi~v~sv~pG~~~~tgm~-~~~~~- 444 (511)
T 2z5l_A 397 -------------------------GNAGQGAYAAANAALDALAERRR-----AAGLPATSVAWGLWGGGGMA-AGAGE- 444 (511)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHH-----TTTCCCEEEEECCBCSTTCC-CCHHH-
T ss_pred -------------------------CCCCCHHHHHHHHHHHHHHHHHH-----HcCCcEEEEECCcccCCccc-ccccH-
Confidence 44677899999999999988653 35999999999999 55543 22110
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
. .+. ......++++++++.+..++....
T Consensus 445 -~----~~~-~~g~~~l~~e~~a~~l~~al~~~~ 472 (511)
T 2z5l_A 445 -E----SLS-RRGLRAMDPDAAVDALLGAMGRND 472 (511)
T ss_dssp -H----HHH-HHTBCCBCHHHHHHHHHHHHHHTC
T ss_pred -H----HHH-hcCCCCCCHHHHHHHHHHHHhCCC
Confidence 0 011 112346899999999999997654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-23 Score=199.06 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=167.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+++|++|||||+|+||++++++|+++ |+..|++++|+..+.+...+.+. ..++.++.+|+++.+++.++++
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~--~~~v~~~~~Dl~d~~~l~~~~~---- 90 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFN--DPRMRFFIGDVRDLERLNYALE---- 90 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHC--CTTEEEEECCTTCHHHHHHHTT----
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhc--CCCEEEEECCCCCHHHHHHHHh----
Confidence 3578999999999999999999999999 94499999999877776666654 2578999999999998877764
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||....+ .........+++|+.|+.++++++.+.. .++||++||..+..
T Consensus 91 ---~~D~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~gt~~l~~aa~~~~------v~~~V~~SS~~~~~--------- 147 (344)
T 2gn4_A 91 ---GVDICIHAAALKHVP-----IAEYNPLECIKTNIMGASNVINACLKNA------ISQVIALSTDKAAN--------- 147 (344)
T ss_dssp ---TCSEEEECCCCCCHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHTT------CSEEEEECCGGGSS---------
T ss_pred ---cCCEEEECCCCCCCC-----chhcCHHHHHHHHHHHHHHHHHHHHhCC------CCEEEEecCCccCC---------
Confidence 699999999975321 1223456889999999999999998752 26999999976541
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+...|+.||++.+.+++.+++++ .+.|+++++|+||.+.++.. ...+.
T Consensus 148 -----------------------------p~~~Y~~sK~~~E~~~~~~~~~~-~~~g~~~~~vRpg~v~g~~~--~~i~~ 195 (344)
T 2gn4_A 148 -----------------------------PINLYGATKLCSDKLFVSANNFK-GSSQTQFSVVRYGNVVGSRG--SVVPF 195 (344)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHGGGCC-CSSCCEEEEECCCEETTCTT--SHHHH
T ss_pred -----------------------------CccHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEeccEECCCC--CHHHH
Confidence 24589999999999999999887 66799999999999999742 22221
Q ss_pred hhhh-------cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLL-------FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~-------~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+... ...........++.++|+|++++.++... ..|+.+..++.
T Consensus 196 ~~~~~~~g~~~~~i~~~~~~r~~i~v~D~a~~v~~~l~~~---~~g~~~~~~~~ 246 (344)
T 2gn4_A 196 FKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRM---HGGEIFVPKIP 246 (344)
T ss_dssp HHHHHHHTCCCEEESCTTCEEEEECHHHHHHHHHHHHHHC---CSSCEEEECCC
T ss_pred HHHHHHcCCCceEEeCCCeEEeeEEHHHHHHHHHHHHhhc---cCCCEEecCCC
Confidence 1110 00000011123689999999999999764 25656655543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=3e-22 Score=188.65 Aligned_cols=239 Identities=13% Similarity=0.107 Sum_probs=164.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.++++|||||+|+||++++++|+++| +.|++++|+........+.+.. .+.++.++.+|+++.+++.++++. .
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~-----~ 77 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHG-YDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDA-----H 77 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHH-----S
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCC-CcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhc-----c
Confidence 46799999999999999999999999 5999999976544333333322 245789999999999999988875 3
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||..... ...+..+..+++|+.++..+++++. +.+ .++||++||...+...
T Consensus 78 ~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~--~~~iv~~SS~~~~g~~---------- 136 (341)
T 3enk_A 78 PITAAIHFAALKAVG-----ESVAKPIEYYRNNLDSLLSLLRVMR----ERA--VKRIVFSSSATVYGVP---------- 136 (341)
T ss_dssp CCCEEEECCCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHH----HTT--CCEEEEEEEGGGBCSC----------
T ss_pred CCcEEEECccccccC-----ccccChHHHHHHHHHHHHHHHHHHH----hCC--CCEEEEEecceEecCC----------
Confidence 799999999976321 1234456788999999998877654 332 2699999997765211
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc--------
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-------- 274 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-------- 274 (358)
...+.++..+......|+.||++.+.+++.++.++ .++++++++||.+.++....
T Consensus 137 --------------~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~lRp~~v~G~~~~~~~g~~~~~ 199 (341)
T 3enk_A 137 --------------ERSPIDETFPLSATNPYGQTKLMAEQILRDVEAAD---PSWRVATLRYFNPVGAHESGLIGEDPAG 199 (341)
T ss_dssp --------------SSSSBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECCCTTSSCCCCCSS
T ss_pred --------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHhhcC---CCceEEEEeeccccCCccccccCCCccc
Confidence 01122333455567789999999999999999886 36999999999998874311
Q ss_pred ---cchhhhhh-hc---chh----------HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 275 ---EHIPLFRL-LF---PPF----------QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 275 ---~~~~~~~~-~~---~~~----------~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...++... .. ..+ .......++.++|+|++++.++..+.....|..+...++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~ 268 (341)
T 3enk_A 200 IPNNLMPYVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASLTVNLGTG 268 (341)
T ss_dssp SCSSHHHHHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCEEEEESCS
T ss_pred CccchHHHHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcceEEEeCCC
Confidence 11111110 00 000 000112367889999999999976322345666766554
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=186.81 Aligned_cols=248 Identities=12% Similarity=0.038 Sum_probs=167.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++|||||+|+||+++++.|+++| +.|++++|+. .......+.+.. ..++.++.+|+++.+++.++++.. ++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 74 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLSS-LGNFEFVHGDIRNKNDVTRLITKY-----MP 74 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHHT-TCCCEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred cEEEEeCCCchhHHHHHHHHHhCC-CEEEEEeCCCccCchhhhhhhcc-CCceEEEEcCCCCHHHHHHHHhcc-----CC
Confidence 579999999999999999999999 5999998752 222222233322 246889999999999999888752 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC---C
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK---A 201 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~---~ 201 (358)
|+||||||.... +.+.+.++..+++|+.++..+++++.+.+.+ ++||++||...+... .. .|.. .
T Consensus 75 d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~-----~~iv~~SS~~v~g~~-~~-~~~~e~~~ 142 (347)
T 1orr_A 75 DSCFHLAGQVAM-----TTSIDNPCMDFEINVGGTLNLLEAVRQYNSN-----CNIIYSSTNKVYGDL-EQ-YKYNETET 142 (347)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEEEEGGGGTTC-TT-SCEEECSS
T ss_pred CEEEECCcccCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-----ceEEEeccHHHhCCC-Cc-CCcccccc
Confidence 999999997522 1234578889999999999999999887642 599999998754211 00 0000 0
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--hh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~~ 279 (358)
.|.+. ......++..+..+...|+.+|++.+.+++.++.++ |+++++|+||.+.+++...... .+
T Consensus 143 ~~~~~---------~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~~~~~~~~~ 209 (347)
T 1orr_A 143 RYTCV---------DKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSMYGGRQFATYDQGWV 209 (347)
T ss_dssp CEEET---------TCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTCCCBTTBCHH
T ss_pred ccccc---------ccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEccCceeCcCCCCCCcCcHH
Confidence 00000 000112233344567789999999999999998876 8999999999999986532110 01
Q ss_pred hhhhcchhHHh-----hh---------cCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLFPPFQKY-----IT---------KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~~~~~~~-----~~---------~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
........... +. ..++.++|+|+++++++... ...+|+.+..+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~-~~~~g~~~~v~~~ 269 (347)
T 1orr_A 210 GWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANV-SKIRGNAFNIGGT 269 (347)
T ss_dssp HHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTH-HHHTTCEEEESSC
T ss_pred HHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhcc-ccCCCCEEEeCCC
Confidence 11111111111 00 12679999999999999742 1356777776654
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-22 Score=184.70 Aligned_cols=230 Identities=14% Similarity=0.125 Sum_probs=162.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.-+.+++|||||+|+||+++++.|+++| +.|++++|+... +. + ++.++.+|+++.+++.++++.
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~-~~----l-----~~~~~~~Dl~d~~~~~~~~~~----- 72 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQN-VEVFGTSRNNEA-KL----P-----NVEMISLDIMDSQRVKKVISD----- 72 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCTTC-CC----T-----TEEEEECCTTCHHHHHHHHHH-----
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcc-cc----c-----eeeEEECCCCCHHHHHHHHHh-----
Confidence 4467799999999999999999999999 599999998643 11 1 678999999999999988875
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||..... .+.+.++..+++|+.++..+++++ +.+.. .++||++||...+.... +
T Consensus 73 ~~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~~----~~~iv~~SS~~v~g~~~----~--- 135 (321)
T 2pk3_A 73 IKPDYIFHLAAKSSVK-----DSWLNKKGTFSTNVFGTLHVLDAV-RDSNL----DCRILTIGSSEEYGMIL----P--- 135 (321)
T ss_dssp HCCSEEEECCSCCCHH-----HHTTCHHHHHHHHHHHHHHHHHHH-HHHTC----CCEEEEEEEGGGTBSCC----G---
T ss_pred cCCCEEEEcCcccchh-----hhhhcHHHHHHHHHHHHHHHHHHH-HHhCC----CCeEEEEccHHhcCCCC----C---
Confidence 3699999999975321 123467889999999999999999 55521 26999999987552110 0
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-h-hh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-I-PL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~-~~ 279 (358)
...+.++..+..+...|+.+|++.+.+++.++.+. |+++++++||.+.+++..... . .+
T Consensus 136 ---------------~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~~~~~~~~~ 196 (321)
T 2pk3_A 136 ---------------EESPVSEENQLRPMSPYGVSKASVGMLARQYVKAY----GMDIIHTRTFNHIGPGQSLGFVTQDF 196 (321)
T ss_dssp ---------------GGCSBCTTSCCBCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCTTSHHHHH
T ss_pred ---------------CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHc----CCCEEEEEeCcccCcCCCCCchHHHH
Confidence 00112233345567789999999999999998875 899999999999998654321 1 11
Q ss_pred hhhhcc----------hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLFP----------PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~~----------~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...... .+ .......++.++|+|+++++++..+ .+|..+..+++
T Consensus 197 ~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~g~~~~i~~~ 251 (321)
T 2pk3_A 197 AKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYG---KTGDVYNVCSG 251 (321)
T ss_dssp HHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEESCS
T ss_pred HHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCC---CCCCeEEeCCC
Confidence 111100 00 0001233689999999999999765 35566665543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=187.68 Aligned_cols=251 Identities=14% Similarity=0.063 Sum_probs=163.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEE-EecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIM-HLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~-~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++++|||||+|+||++++++|+++| +.|++++|+....+...+.+.. .+.++.++ .+|+++.+++.++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~---- 82 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK---- 82 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT----
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCC-CEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHc----
Confidence 3678999999999999999999999999 5999999997766555444322 12568888 799999887766554
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||..... ++++..+++|+.++..+++++.+. .+ .++||++||...+..........
T Consensus 83 ---~~d~vih~A~~~~~~--------~~~~~~~~~n~~g~~~ll~~~~~~---~~--~~~iv~~SS~~~~~~~~~~~~~~ 146 (342)
T 1y1p_A 83 ---GAAGVAHIASVVSFS--------NKYDEVVTPAIGGTLNALRAAAAT---PS--VKRFVLTSSTVSALIPKPNVEGI 146 (342)
T ss_dssp ---TCSEEEECCCCCSCC--------SCHHHHHHHHHHHHHHHHHHHHTC---TT--CCEEEEECCGGGTCCCCTTCCCC
T ss_pred ---CCCEEEEeCCCCCCC--------CCHHHHHHHHHHHHHHHHHHHHhC---CC--CcEEEEeccHHHhcCCCCCCCCc
Confidence 799999999976321 245778999999999999998652 11 26999999987653110000000
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc---
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--- 276 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~--- 276 (358)
..+-++.... ..... .......+..+...|+.||++.+.+++.+++++ .. ++++++++||.+.+++.....
T Consensus 147 ~~~E~~~~~~--~~~~~--~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~-~~~~~~~rp~~v~g~~~~~~~~~~ 220 (342)
T 1y1p_A 147 YLDEKSWNLE--SIDKA--KTLPESDPQKSLWVYAASKTEAELAAWKFMDEN-KP-HFTLNAVLPNYTIGTIFDPETQSG 220 (342)
T ss_dssp EECTTCCCHH--HHHHH--HHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-CC-SSEEEEEEESEEECCCSCTTTCCC
T ss_pred ccCccccCch--hhhhh--ccccccccccchHHHHHHHHHHHHHHHHHHHhc-CC-CceEEEEcCCceECCCCCCCCCCc
Confidence 0000000000 00000 000000123466789999999999999999987 43 899999999999998654321
Q ss_pred -h-hhhhhhc---c--hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 277 -I-PLFRLLF---P--PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 277 -~-~~~~~~~---~--~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
. .+..... . .........++.++|+|++++.++..+. .+|.++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~ 270 (342)
T 1y1p_A 221 STSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQ--IERRRV 270 (342)
T ss_dssp HHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTT--CCSCEE
T ss_pred cHHHHHHHHHcCCCccccccCCcCCEeEHHHHHHHHHHHHcCcc--cCCceE
Confidence 0 1111110 0 0111122347899999999999997643 355433
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=186.01 Aligned_cols=205 Identities=18% Similarity=0.154 Sum_probs=147.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCc--EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~--~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++|++|||||+|+||++++++|+++| + +|++++|+....+... ..++.++.+|+++.+++.++++
T Consensus 15 ~m~~~~vlVtGasg~iG~~l~~~L~~~G-~~~~V~~~~r~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~---- 83 (242)
T 2bka_A 15 RMQNKSVFILGASGETGRVLLKEILEQG-LFSKVTLIGRRKLTFDEEA------YKNVNQEVVDFEKLDDYASAFQ---- 83 (242)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHT-CCSEEEEEESSCCCCCSGG------GGGCEEEECCGGGGGGGGGGGS----
T ss_pred hhcCCeEEEECCCcHHHHHHHHHHHcCC-CCCEEEEEEcCCCCccccc------cCCceEEecCcCCHHHHHHHhc----
Confidence 3678999999999999999999999999 6 8999999864332110 1367899999999988776654
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||.... ...++..+++|+.++..+++++.+ .+ .++||++||..++.
T Consensus 84 ---~~d~vi~~ag~~~~--------~~~~~~~~~~n~~~~~~~~~~~~~----~~--~~~iv~~SS~~~~~--------- 137 (242)
T 2bka_A 84 ---GHDVGFCCLGTTRG--------KAGAEGFVRVDRDYVLKSAELAKA----GG--CKHFNLLSSKGADK--------- 137 (242)
T ss_dssp ---SCSEEEECCCCCHH--------HHHHHHHHHHHTHHHHHHHHHHHH----TT--CCEEEEECCTTCCT---------
T ss_pred ---CCCEEEECCCcccc--------cCCcccceeeeHHHHHHHHHHHHH----CC--CCEEEEEccCcCCC---------
Confidence 79999999996421 245788899999999988887643 22 26999999987652
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc-EEEEecCCcccCCcccccchh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI-~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+....|+.+|++++.+++.+ ++ ++++|+||.+.|++.......
T Consensus 138 ----------------------------~~~~~Y~~sK~~~e~~~~~~--------~~~~~~~vrpg~v~~~~~~~~~~~ 181 (242)
T 2bka_A 138 ----------------------------SSNFLYLQVKGEVEAKVEEL--------KFDRYSVFRPGVLLCDRQESRPGE 181 (242)
T ss_dssp ----------------------------TCSSHHHHHHHHHHHHHHTT--------CCSEEEEEECCEEECTTGGGSHHH
T ss_pred ----------------------------CCcchHHHHHHHHHHHHHhc--------CCCCeEEEcCceecCCCCCCcHHH
Confidence 12347999999988887643 45 799999999999854321111
Q ss_pred h-hhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 279 L-FRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 279 ~-~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
. ......... .....+++.++|+|++++++++++.. .|.++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~~~~~~~~--~~~~~ 224 (242)
T 2bka_A 182 WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD--KQMEL 224 (242)
T ss_dssp HHHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC--SSEEE
T ss_pred HHHHHhhcccCccccCCcccCHHHHHHHHHHHHhCccc--cCeeE
Confidence 1 111000000 01134578999999999999987654 34444
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-21 Score=172.41 Aligned_cols=191 Identities=14% Similarity=0.124 Sum_probs=141.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La-~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.|++|||||+|+||++++++|+ +.| ++|++++|+.+ .++... ....++.++++|+++.+++.++++
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g-~~V~~~~r~~~~~~~~~~----~~~~~~~~~~~D~~d~~~~~~~~~------- 72 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTD-MHITLYGRQLKTRIPPEI----IDHERVTVIEGSFQNPGXLEQAVT------- 72 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCC-CEEEEEESSHHHHSCHHH----HTSTTEEEEECCTTCHHHHHHHHT-------
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCC-ceEEEEecCccccchhhc----cCCCceEEEECCCCCHHHHHHHHc-------
Confidence 3689999999999999999999 899 59999999976 544432 124678999999999999888875
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||+|.. |+. ++.+++.+++.+ .++||++||..++.
T Consensus 73 ~~d~vv~~ag~~--------------------n~~-----~~~~~~~~~~~~--~~~iv~iSs~~~~~------------ 113 (221)
T 3r6d_A 73 NAEVVFVGAMES--------------------GSD-----MASIVKALSRXN--IRRVIGVSMAGLSG------------ 113 (221)
T ss_dssp TCSEEEESCCCC--------------------HHH-----HHHHHHHHHHTT--CCEEEEEEETTTTS------------
T ss_pred CCCEEEEcCCCC--------------------Chh-----HHHHHHHHHhcC--CCeEEEEeeceecC------------
Confidence 689999999852 222 788888888765 37999999988763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhh----------hhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAK----------AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+.+... .|+.+|.+++.+++. .||++++|+||++.++..
T Consensus 114 -----------------------~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~--------~~i~~~~vrpg~v~~~~~ 162 (221)
T 3r6d_A 114 -----------------------EFPVALEKWTFDNLPISYVQGERQARNVLRE--------SNLNYTILRLTWLYNDPE 162 (221)
T ss_dssp -----------------------CSCHHHHHHHHHTSCHHHHHHHHHHHHHHHH--------SCSEEEEEEECEEECCTT
T ss_pred -----------------------CCCcccccccccccccHHHHHHHHHHHHHHh--------CCCCEEEEechhhcCCCC
Confidence 112222 799999998776642 489999999999988632
Q ss_pred cccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhh--cCCCCCCCceeeec
Q 018331 273 FREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV--SDPSLTKSGVYWSW 323 (358)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~--~~~~~~~~G~~~~~ 323 (358)
......... ........++++|+|+.+++++ ++++...++.+...
T Consensus 163 ~~~~~~~~~------~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~~~~~~i~ 209 (221)
T 3r6d_A 163 XTDYELIPE------GAQFNDAQVSREAVVKAIFDILHAADETPFHRTSIGVG 209 (221)
T ss_dssp CCCCEEECT------TSCCCCCEEEHHHHHHHHHHHHTCSCCGGGTTEEEEEE
T ss_pred CcceeeccC------CccCCCceeeHHHHHHHHHHHHHhcChhhhhcceeeec
Confidence 221111000 0011123678999999999999 88876666665544
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-22 Score=185.50 Aligned_cols=238 Identities=15% Similarity=0.127 Sum_probs=160.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
|++|++|||||+|+||++++++|+++| +.|++++|+....+ ...+.+. ...++.++.+|+++.+++.++++.+
T Consensus 1 m~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~---- 74 (345)
T 2z1m_A 1 MSGKRALITGIRGQDGAYLAKLLLEKG-YEVYGADRRSGEFASWRLKELG-IENDVKIIHMDLLEFSNIIRTIEKV---- 74 (345)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECSCCSTTTTHHHHHTT-CTTTEEECCCCTTCHHHHHHHHHHH----
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccccccHhhcc-ccCceeEEECCCCCHHHHHHHHHhc----
Confidence 357899999999999999999999999 59999999864432 1122222 1346889999999999999988866
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+||||||.... +.+.++++..+++|+.++..+++++..... .++||++||...+... .
T Consensus 75 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-----~~~iv~~SS~~vyg~~-~------- 135 (345)
T 2z1m_A 75 -QPDEVYNLAAQSFV-----GVSFEQPILTAEVDAIGVLRILEALRTVKP-----DTKFYQASTSEMFGKV-Q------- 135 (345)
T ss_dssp -CCSEEEECCCCCCH-----HHHTTSHHHHHHHHTHHHHHHHHHHHHHCT-----TCEEEEEEEGGGGCSC-S-------
T ss_pred -CCCEEEECCCCcch-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-----CceEEEEechhhcCCC-C-------
Confidence 68999999997521 123456888999999999999999985311 2699999998654211 0
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccchhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
..+.++..+..+...|+.||++.+.+++.++.+++- ..++.++.+.||...+... ......
T Consensus 136 ----------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~~~-~~~~~~ 198 (345)
T 2z1m_A 136 ----------------EIPQTEKTPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEFVT-RKITYS 198 (345)
T ss_dssp ----------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSHH-HHHHHH
T ss_pred ----------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcchh-HHHHHH
Confidence 001222234455678999999999999999988621 2345666777887766421 111111
Q ss_pred hhhh-c----c-hhHH-hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 280 FRLL-F----P-PFQK-YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 280 ~~~~-~----~-~~~~-~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.... . . .... .....++.++|+|++++++++.+. .|.|...++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~---~~~~~i~~~ 248 (345)
T 2z1m_A 199 LARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE---PDDYVIATG 248 (345)
T ss_dssp HHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS---CCCEEECCS
T ss_pred HHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC---CceEEEeCC
Confidence 1000 0 0 0001 111237899999999999998653 355544343
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=183.61 Aligned_cols=234 Identities=15% Similarity=0.103 Sum_probs=155.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH--HhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK--SAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~--~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++|++|||||+|+||++++++|+++| +.|+++.|+......... .+.....++.++.+|+++.+++.++++
T Consensus 3 ~~~~~vlVTGatGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 76 (337)
T 2c29_D 3 SQSETVCVTGASGFIGSWLVMRLLERG-YTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIK----- 76 (337)
T ss_dssp ---CEEEETTTTSHHHHHHHHHHHHTT-CEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHT-----
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCC-CEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHc-----
Confidence 467899999999999999999999999 599988888653322221 121112358899999999988877765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+|+|||+|+.... . ..+..+..+++|+.++..+++++.+... .++||++||..++.+......
T Consensus 77 --~~d~Vih~A~~~~~----~--~~~~~~~~~~~nv~gt~~ll~a~~~~~~-----~~riV~~SS~~~~~~~~~~~~--- 140 (337)
T 2c29_D 77 --GCTGVFHVATPMDF----E--SKDPENEVIKPTIEGMLGIMKSCAAAKT-----VRRLVFTSSAGTVNIQEHQLP--- 140 (337)
T ss_dssp --TCSEEEECCCCCCS----S--CSSHHHHTHHHHHHHHHHHHHHHHHHSC-----CCEEEEECCGGGTSCSSSCCS---
T ss_pred --CCCEEEEeccccCC----C--CCChHHHHHHHHHHHHHHHHHHHHhCCC-----ccEEEEeeeHhhcccCCCCCc---
Confidence 58999999986411 1 1223356899999999999999987541 259999999876542211000
Q ss_pred CCccccccccccCCCCCCCCCCCCC--C-------CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGG--D-------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
..++.. + .+....|+.||++.+.+++.++++. |+++++|+||.+.+++
T Consensus 141 -------------------~~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~ 197 (337)
T 2c29_D 141 -------------------VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN----NIDFITIIPTLVVGPF 197 (337)
T ss_dssp -------------------EECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEECEEESCC
T ss_pred -------------------ccCcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCC
Confidence 000110 0 0123469999999888887776554 8999999999999986
Q ss_pred ccccchhhhhhh------cc-hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 272 LFREHIPLFRLL------FP-PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 272 ~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
............ .. .+......+++.++|+|+++++++..+. .+|.|+..
T Consensus 198 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~~ 254 (337)
T 2c29_D 198 IMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIYLFENPK--AEGRYICS 254 (337)
T ss_dssp SCSSCCHHHHHHTHHHHTCGGGHHHHTEEEEEEHHHHHHHHHHHHHCTT--CCEEEEEC
T ss_pred CCCCCCchHHHHHHHHcCCCccccccCCCCEEEHHHHHHHHHHHhcCcc--cCceEEEe
Confidence 533221111110 00 1111122347899999999999997643 36776543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-22 Score=186.90 Aligned_cols=229 Identities=15% Similarity=0.113 Sum_probs=163.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++++++|||||+|+||++++++|+++| +.|++++|+........+.+. ...++.++.+|+++.+++.++++.+
T Consensus 6 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~---- 79 (357)
T 1rkx_A 6 FWQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETAR-VADGMQSEIGDIRDQNKLLESIREF---- 79 (357)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHTT-TTTTSEEEECCTTCHHHHHHHHHHH----
T ss_pred hhCCCEEEEECCCchHHHHHHHHHHhCC-CeEEEEeCCCcccchhhHhhc-cCCceEEEEccccCHHHHHHHHHhc----
Confidence 3678899999999999999999999999 599999998654433333332 2457899999999999999988865
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+||||||.... ..+.+.++..+++|+.++..+++++.+. . . .++||++||...+.....
T Consensus 80 -~~d~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~-~-~---~~~~v~~SS~~vyg~~~~------- 141 (357)
T 1rkx_A 80 -QPEIVFHMAAQPLV-----RLSYSEPVETYSTNVMGTVYLLEAIRHV-G-G---VKAVVNITSDKCYDNKEW------- 141 (357)
T ss_dssp -CCSEEEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH-C-C---CCEEEEECCGGGBCCCCS-------
T ss_pred -CCCEEEECCCCccc-----ccchhCHHHHHHHHHHHHHHHHHHHHHh-C-C---CCeEEEecCHHHhCCCCc-------
Confidence 69999999996311 1235678899999999999999999764 1 1 269999999875521100
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc------cCCcEEEEecCCcccCCccccc
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE------ETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~------~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
..+..+..+..+...|+.+|++.+.+++.++.++ . +.|+++++++||.+.+++....
T Consensus 142 ----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~~~gi~~~~lrp~~v~G~~~~~~ 204 (357)
T 1rkx_A 142 ----------------IWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSF-FNPANYGQHGTAVATVRAGNVIGGGDWAL 204 (357)
T ss_dssp ----------------SSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHH-SCGGGHHHHCCEEEEEECCCEECTTCCCS
T ss_pred ----------------CCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH-hhhhccccCCceEEEEeeceeeCCCCCcc
Confidence 0011222244456789999999999999999886 3 3499999999999999864321
Q ss_pred --chh-hhhhhc---c--hhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 276 --HIP-LFRLLF---P--PFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 276 --~~~-~~~~~~---~--~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
..+ +..... . .........++.++|+|++++.++..
T Consensus 205 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 248 (357)
T 1rkx_A 205 DRIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQK 248 (357)
T ss_dssp SCHHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCCEEECCCCCeeccEeHHHHHHHHHHHHHh
Confidence 111 111100 0 00001123468899999999998863
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=182.83 Aligned_cols=236 Identities=11% Similarity=0.032 Sum_probs=165.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH----HHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL----KAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~----~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+++++++|||||+|+||+++++.|+++| +.|++++|+.. .++...+.+... ..++.++.+|+++.+++.++++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~- 101 (352)
T 1sb8_A 24 PAQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA- 101 (352)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT-
T ss_pred CccCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc-
Confidence 4678899999999999999999999999 59999998652 333333332211 2578899999999998887765
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
++|+||||||..... .+.++++..+++|+.++..+++++.+. + .++||++||...+....
T Consensus 102 ------~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~~--- 161 (352)
T 1sb8_A 102 ------GVDYVLHQAALGSVP-----RSINDPITSNATNIDGFLNMLIAARDA----K--VQSFTYAASSSTYGDHP--- 161 (352)
T ss_dssp ------TCSEEEECCSCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGGTTCC---
T ss_pred ------CCCEEEECCcccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHhcCCCC---
Confidence 799999999975321 134678889999999999999998753 1 26999999987653110
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
..+.++..+..+...|+.+|++.+.+++.++.++ |+++++++||.+.+++.....
T Consensus 162 ---------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~ 216 (352)
T 1sb8_A 162 ---------------------GLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQDPNG 216 (352)
T ss_dssp ---------------------CSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTCCCCS
T ss_pred ---------------------CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEEECceeCcCCCCCc
Confidence 0011222333456789999999999999998876 899999999999998653321
Q ss_pred --hhhhhhhcc-hhHH---------hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 277 --IPLFRLLFP-PFQK---------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 277 --~~~~~~~~~-~~~~---------~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..+...+.. .... .....++.++|+|++++.++.... ...|..+...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~ni~~ 276 (352)
T 1sb8_A 217 AYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGL-DARNQVYNIAV 276 (352)
T ss_dssp TTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCG-GGCSEEEEESC
T ss_pred chhhHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccc-cCCCceEEeCC
Confidence 011111100 0000 011246889999999999987632 23556665554
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=185.90 Aligned_cols=229 Identities=14% Similarity=0.095 Sum_probs=151.3
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+..+++++++++|||||+|+||++++++|+++| +.|++++|+........+.+ .++.++.+|+++.+++.+++++
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~l----~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQG-HEILVIDNFATGKREVLPPV----AGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGT-CEEEEEECCSSSCGGGSCSC----TTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCccchhhhhcc----CCceEEEeeCCCHHHHHHHHhh
Confidence 444567899999999999999999999999999 59999999653322111111 4688999999999999988876
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+ ++|+||||||..... +.++++ +++|+.++..+++++... + .++||++||...+... ..
T Consensus 87 ~-----~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~~~~-~~- 145 (330)
T 2pzm_A 87 F-----KPTHVVHSAAAYKDP------DDWAED--AATNVQGSINVAKAASKA----G--VKRLLNFQTALCYGRP-AT- 145 (330)
T ss_dssp H-----CCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHHH----T--CSEEEEEEEGGGGCSC-SS-
T ss_pred c-----CCCEEEECCccCCCc------cccChh--HHHHHHHHHHHHHHHHHc----C--CCEEEEecCHHHhCCC-cc-
Confidence 5 699999999976331 334555 999999999999999743 1 2699999998765211 00
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
. ..+.++.. .+...|+.+|++.+.+++.+ ++....|+|+.+.+|+.....
T Consensus 146 ~--------------------~~~~~E~~--~~~~~Y~~sK~~~e~~~~~~--------~~~~~~iR~~~v~gp~~~~~~ 195 (330)
T 2pzm_A 146 V--------------------PIPIDSPT--APFTSYGISKTAGEAFLMMS--------DVPVVSLRLANVTGPRLAIGP 195 (330)
T ss_dssp S--------------------SBCTTCCC--CCCSHHHHHHHHHHHHHHTC--------SSCEEEEEECEEECTTCCSSH
T ss_pred C--------------------CCCcCCCC--CCCChHHHHHHHHHHHHHHc--------CCCEEEEeeeeeECcCCCCCH
Confidence 0 00111111 24568999999988888765 344445555555444321111
Q ss_pred hh-hhhhhc---chhH-HhhhcCccchhHHhh-hhhhhhcCCCCCCCceeeecCCC
Q 018331 277 IP-LFRLLF---PPFQ-KYITKGYVSEDEAGK-RLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ~~-~~~~~~---~~~~-~~~~~~~~~~~~~a~-~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. +..... ..+. .. ...++.++|+|+ +++++++.+. |..+..+++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~----g~~~~v~~~ 246 (330)
T 2pzm_A 196 IPTFYKRLKAGQKCFCSDT-VRDFLDMSDFLAIADLSLQEGRP----TGVFNVSTG 246 (330)
T ss_dssp HHHHHHHHHTTCCCCEESC-EECEEEHHHHHHHHHHHTSTTCC----CEEEEESCS
T ss_pred HHHHHHHHHcCCEEeCCCC-EecceeHHHHHHHHHHHHhhcCC----CCEEEeCCC
Confidence 11 101000 0000 01 245789999999 9999998742 666766654
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=183.70 Aligned_cols=233 Identities=15% Similarity=0.171 Sum_probs=161.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++++|||||+|+||++++++|+++|. +.|++++|+.. ..+.. +.+. ...++.++.+|+++.+++.+++.
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~----- 74 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE-DDPRYTFVKGDVADYELVKELVR----- 74 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHH-----
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc-cCCceEEEEcCCCCHHHHHHHhh-----
Confidence 356799999999999999999999972 48999888641 11111 1111 13578999999999999888773
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|+||||||.... +.+.+.++..+++|+.++..+++++.+.- . .++||++||...+... .
T Consensus 75 --~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~--~---~~~iv~~SS~~vyg~~-~------ 135 (336)
T 2hun_A 75 --KVDGVVHLAAESHV-----DRSISSPEIFLHSNVIGTYTLLESIRREN--P---EVRFVHVSTDEVYGDI-L------ 135 (336)
T ss_dssp --TCSEEEECCCCCCH-----HHHHHCTHHHHHHHHHHHHHHHHHHHHHC--T---TSEEEEEEEGGGGCCC-S------
T ss_pred --CCCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhC--C---CcEEEEeccHHHHCCC-C------
Confidence 79999999997531 12345678899999999999999998871 1 2699999998654210 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~- 278 (358)
..+.++..+..+...|+.||++.+.+++.++.++ |+++++++||.+.+++..... .+
T Consensus 136 -----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~g~~~~~~~~~~~ 194 (336)
T 2hun_A 136 -----------------KGSFTENDRLMPSSPYSATKAASDMLVLGWTRTY----NLNASITRCTNNYGPYQFPEKLIPK 194 (336)
T ss_dssp -----------------SSCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEEECEEESTTCCTTSHHHH
T ss_pred -----------------CCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeeeeeCcCCCcCchHHH
Confidence 0112222344556789999999999999998875 899999999999998643211 11
Q ss_pred hhhhhc-----chh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 LFRLLF-----PPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 ~~~~~~-----~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+..... ..+ .......++.++|+|+++++++... .+|+.+..+++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~v~~~ 245 (336)
T 2hun_A 195 TIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKG---ESREIYNISAG 245 (336)
T ss_dssp HHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCS
T ss_pred HHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCC---CCCCEEEeCCC
Confidence 111110 000 0011234678999999999999753 36766666654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=183.81 Aligned_cols=171 Identities=11% Similarity=-0.008 Sum_probs=130.6
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++++|++|||||+|+||+++++.|+++| +.|++++|+... .++.++.+|+++.+++.++++
T Consensus 13 ~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~------------~~~~~~~~Dl~d~~~~~~~~~--- 76 (347)
T 4id9_A 13 GLVPRGSHMILVTGSAGRVGRAVVAALRTQG-RTVRGFDLRPSG------------TGGEEVVGSLEDGQALSDAIM--- 76 (347)
T ss_dssp --------CEEEETTTSHHHHHHHHHHHHTT-CCEEEEESSCCS------------SCCSEEESCTTCHHHHHHHHT---
T ss_pred cccccCCCEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCC------------CCccEEecCcCCHHHHHHHHh---
Confidence 3457899999999999999999999999999 599999998643 467899999999999887766
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++|+|||+|+.... +.+.++..+++|+.++..+++++... + .++||++||...+....
T Consensus 77 ----~~d~vih~A~~~~~-------~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~V~~SS~~vyg~~~----- 134 (347)
T 4id9_A 77 ----GVSAVLHLGAFMSW-------APADRDRMFAVNVEGTRRLLDAASAA----G--VRRFVFASSGEVYPENR----- 134 (347)
T ss_dssp ----TCSEEEECCCCCCS-------SGGGHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGTTTTS-----
T ss_pred ----CCCEEEECCcccCc-------chhhHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEECCHHHhCCCC-----
Confidence 79999999997532 34556899999999999999988652 2 25999999976553100
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA 268 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~ 268 (358)
....+..+..+......|+.+|.+.+.+++.++.+. |+.+++++|+.+.
T Consensus 135 -----------------~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~ 183 (347)
T 4id9_A 135 -----------------PEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG----AMETVILRFSHTQ 183 (347)
T ss_dssp -----------------CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS----SSEEEEEEECEEE
T ss_pred -----------------CCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc----CCceEEEccceEe
Confidence 011123333455667789999999999999888774 8999999999998
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=180.12 Aligned_cols=226 Identities=15% Similarity=0.100 Sum_probs=165.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHH-hCCCcEEEEEecChH------------HHHHHHHHhcCCCCceEEEEecCCCH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFL------------KAERAAKSAGMAKENYTIMHLDLASL 107 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La-~~Ga~~Vi~~~r~~~------------~~~~~~~~~~~~~~~i~~~~~Dl~~~ 107 (358)
..+.+|++||||||+|||+|++..|+ ..|+ .++++.+..+ ......+.++..+.+...+.||+++.
T Consensus 46 ~~~~pK~vLVtGaSsGiGlA~AialAf~~GA-~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~ 124 (401)
T 4ggo_A 46 GAKAPKNVLVLGCSNGYGLASRITAAFGYGA-ATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSD 124 (401)
T ss_dssp TSCCCCEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSH
T ss_pred ccCCCCEEEEECCCCcHHHHHHHHHHhhCCC-CEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCH
Confidence 35678999999999999999999999 6787 7777766432 13344566666788999999999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccCCCC------------C---------------------CCCCCHHhHHhhh--
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA------------K---------------------EPTFTAEGFELSV-- 152 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~------------~---------------------~~~~~~~~~~~~~-- 152 (358)
++++++++++.+.+|+||+||||++...... + +...+.++++.+.
T Consensus 125 e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~T~~v 204 (401)
T 4ggo_A 125 EIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAATVKV 204 (401)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999998752110 0 0122445555444
Q ss_pred -hhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhh
Q 018331 153 -GTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAK 231 (358)
Q Consensus 153 -~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (358)
....++.+...+...+.|.+ ++++|.+|+..... .+|.+.
T Consensus 205 Mg~s~~s~w~~al~~a~lla~----G~siva~SYiGse~-----------------------------------t~P~Y~ 245 (401)
T 4ggo_A 205 MGGEDWERWIKQLSKEGLLEE----GCITLAYSYIGPEA-----------------------------------TQALYR 245 (401)
T ss_dssp HSSHHHHHHHHHHHHTTCEEE----EEEEEEEECCCCGG-----------------------------------GHHHHT
T ss_pred HhhhHHHHHHHHHHhhhcccC----CceEEEEeccCcce-----------------------------------eecCCC
Confidence 44555666666666666655 37999999988753 334333
Q ss_pred --hhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhh
Q 018331 232 --AYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVV 309 (358)
Q Consensus 232 --~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~ 309 (358)
.+|.+|++|+..++.|+.++ . +++++++.||.+.|. .....|.+......+.+.. +..-+-|.|.+.+..|.
T Consensus 246 ~G~mG~AKaaLEa~~r~La~eL-~--~~~a~v~v~~a~vT~--AssaIP~~ply~~~l~kvm-k~~g~heg~ieq~~rl~ 319 (401)
T 4ggo_A 246 KGTIGKAKEHLEATAHRLNKEN-P--SIRAFVSVNKGLVTR--ASAVIPVIPLYLASLFKVM-KEKGNHEGCIEQITRLY 319 (401)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCCCCCT--TGGGSSSHHHHHHHHHHHH-HHHTCCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhc-C--CCcEEEEEcCccccc--hhhcCCCchHHHHHHHHHH-HhcCCCCchHHHHHHHH
Confidence 68999999999999999998 3 589999999999996 3444554444444444332 22336789999999998
Q ss_pred cCC
Q 018331 310 SDP 312 (358)
Q Consensus 310 ~~~ 312 (358)
.+.
T Consensus 320 ~~~ 322 (401)
T 4ggo_A 320 AER 322 (401)
T ss_dssp HHT
T ss_pred HHh
Confidence 653
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.9e-21 Score=182.79 Aligned_cols=237 Identities=10% Similarity=0.019 Sum_probs=165.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-----CCceEEEEecCCCHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-----KENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-----~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
+.++++++|||||+|+||+++++.|+++| +.|++++|+..........+... ..++.++.+|+++.+++.++++
T Consensus 21 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 99 (351)
T 3ruf_A 21 LIFSPKTWLITGVAGFIGSNLLEKLLKLN-QVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMK 99 (351)
T ss_dssp HHHSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTT
T ss_pred CCCCCCeEEEECCCcHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhc
Confidence 45788999999999999999999999999 69999999653322222222111 1578999999999998877765
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++|+|||+||..... ...+++...+++|+.++..+++++.... .+++|++||...+...
T Consensus 100 -------~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~ll~a~~~~~------~~~~v~~SS~~vyg~~--- 158 (351)
T 3ruf_A 100 -------GVDHVLHQAALGSVP-----RSIVDPITTNATNITGFLNILHAAKNAQ------VQSFTYAASSSTYGDH--- 158 (351)
T ss_dssp -------TCSEEEECCCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHTT------CSEEEEEEEGGGGTTC---
T ss_pred -------CCCEEEECCccCCcc-----hhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEEecHHhcCCC---
Confidence 799999999975321 2345677889999999999999886542 2599999998765311
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
...+.++..+..+...|+.+|.+.+.+++.++.+. |+++++++||.+.++.....
T Consensus 159 ---------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~ 213 (351)
T 3ruf_A 159 ---------------------PALPKVEENIGNPLSPYAVTKYVNEIYAQVYARTY----GFKTIGLRYFNVFGRRQDPN 213 (351)
T ss_dssp ---------------------CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECSEESTTCCCC
T ss_pred ---------------------CCCCCccCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeeCceeCcCCCCC
Confidence 01122233344556789999999999999998875 89999999999999854332
Q ss_pred ch--hhhhhhcc-hhH---------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 276 HI--PLFRLLFP-PFQ---------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 276 ~~--~~~~~~~~-~~~---------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. .+...+.. ... ......++.++|+|++++.++..+. ...|..+...+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~-~~~~~~~ni~~ 274 (351)
T 3ruf_A 214 GAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKD-SAKDNIYNVAV 274 (351)
T ss_dssp STTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCG-GGCSEEEEESC
T ss_pred cchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhcc-ccCCCEEEeCC
Confidence 10 11111110 000 0011236789999999999987632 23566665554
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3.9e-21 Score=172.94 Aligned_cols=217 Identities=16% Similarity=0.109 Sum_probs=151.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++++|||||+|+||++++++|+++ | +.|++++|+..+.+.. ..++.++.+|+++.+++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g-~~V~~~~r~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~----- 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDK-FVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ----- 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTT-CEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT-----
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCC-cEEEEEEcCCCchhhc-------CCCeeEEEecCCCHHHHHHHHc-----
Confidence 35789999999999999999999999 7 5999999987654332 3467899999999999888775
Q ss_pred CCCccEEEEcccccCCCCC--------CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAK--------EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~--------~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
.+|+||||||....... ..+...+.++..+++|+.++..+++++.... .++||++||..+....
T Consensus 69 --~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~------~~~iv~~SS~~~~~~~ 140 (253)
T 1xq6_A 69 --GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAG------VKHIVVVGSMGGTNPD 140 (253)
T ss_dssp --TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHT------CSEEEEEEETTTTCTT
T ss_pred --CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcC------CCEEEEEcCccCCCCC
Confidence 58999999997632110 0122334556788999999999998886542 2599999998764200
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCc--hhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFD--GAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
.+.. +...|+.+|++++.+++. .|+++++|+||.+.++
T Consensus 141 --------------------------------~~~~~~~~~~y~~sK~~~e~~~~~--------~~i~~~~vrpg~v~~~ 180 (253)
T 1xq6_A 141 --------------------------------HPLNKLGNGNILVWKRKAEQYLAD--------SGTPYTIIRAGGLLDK 180 (253)
T ss_dssp --------------------------------CGGGGGGGCCHHHHHHHHHHHHHT--------SSSCEEEEEECEEECS
T ss_pred --------------------------------CccccccchhHHHHHHHHHHHHHh--------CCCceEEEecceeecC
Confidence 0111 123588899998777642 5899999999999997
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
...... ........... ....++.++|+|+++++++..+. .+|+.+...+
T Consensus 181 ~~~~~~-~~~~~~~~~~~--~~~~~~~~~Dva~~~~~~~~~~~--~~g~~~~i~~ 230 (253)
T 1xq6_A 181 EGGVRE-LLVGKDDELLQ--TDTKTVPRADVAEVCIQALLFEE--AKNKAFDLGS 230 (253)
T ss_dssp CSSSSC-EEEESTTGGGG--SSCCEEEHHHHHHHHHHHTTCGG--GTTEEEEEEE
T ss_pred Ccchhh-hhccCCcCCcC--CCCcEEcHHHHHHHHHHHHcCcc--ccCCEEEecC
Confidence 532110 00000011110 12347899999999999998754 3676666554
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=183.58 Aligned_cols=247 Identities=14% Similarity=0.190 Sum_probs=165.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|||||+|+||++++++|+++ | +.|++++|+.. ..+.. ..+. ...++.++.+|+++.+++.+++++. +
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~-~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~ 73 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESL-SDIS-ESNRYNFEHADICDSAEITRIFEQY-----Q 73 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGG-TTTT-TCTTEEEEECCTTCHHHHHHHHHHH-----C
T ss_pred EEEEECCCchHhHHHHHHHHhcCC-CeEEEEecCCCCCchhhh-hhhh-cCCCeEEEECCCCCHHHHHHHHhhc-----C
Confidence 5999999999999999999998 7 59999988641 11111 1111 1357899999999999999888752 7
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC---CCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---YPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~---~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+||||||.... +.+.+.++..+++|+.++..+++++.+.|..-. ..+++||++||...+.... . +.
T Consensus 74 ~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~-~---~~ 144 (361)
T 1kew_A 74 PDAVMHLAAESHV-----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLP-H---PD 144 (361)
T ss_dssp CSEEEECCSCCCH-----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCC-C---GG
T ss_pred CCEEEECCCCcCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCc-c---cc
Confidence 9999999997531 123467788999999999999999999865310 0014999999976442110 0 00
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~- 278 (358)
. . .......+.++..+..+...|+.||++.+.+++.++.++ |+++++|+||.+.+++..... .+
T Consensus 145 ~-~---------~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~~~~~~~~~ 210 (361)
T 1kew_A 145 E-V---------ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHFPEKLIPL 210 (361)
T ss_dssp G-S---------CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSHHHH
T ss_pred c-c---------cccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCcEEEEeeceeECCCCCcccHHHH
Confidence 0 0 000000122333445567789999999999999999886 899999999999998653211 11
Q ss_pred hhhhhcc--hhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFP--PFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~--~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+...... ... ......++.++|+|++++++++.. .+|+.+..+++.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~~~ 262 (361)
T 1kew_A 211 VILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEG---KAGETYNIGGHN 262 (361)
T ss_dssp HHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCCC
T ss_pred HHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCC---CCCCEEEecCCC
Confidence 1111000 000 001134678999999999999754 367666666543
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=177.77 Aligned_cols=238 Identities=11% Similarity=0.104 Sum_probs=158.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+.++++++|||||+|+||++++++|+++|. ..|+..+|...... ...+.. ...++.++.+|+++.+++.++++..
T Consensus 20 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 97 (346)
T 4egb_A 20 FQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSIQDHPNYYFVKGEIQNGELLEHVIKER 97 (346)
T ss_dssp ----CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHH
T ss_pred cccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhc
Confidence 457788999999999999999999999993 36777777531110 111111 1357899999999999999988853
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++|+|||+||..... ...+.++..+++|+.++..+++++... + .+++|++||...+....
T Consensus 98 -----~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~ll~a~~~~----~--~~~~v~~SS~~vy~~~~---- 157 (346)
T 4egb_A 98 -----DVQVIVNFAAESHVD-----RSIENPIPFYDTNVIGTVTLLELVKKY----P--HIKLVQVSTDEVYGSLG---- 157 (346)
T ss_dssp -----TCCEEEECCCCC--------------CHHHHHHTHHHHHHHHHHHHS----T--TSEEEEEEEGGGGCCCC----
T ss_pred -----CCCEEEECCcccchh-----hhhhCHHHHHHHHHHHHHHHHHHHHhc----C--CCEEEEeCchHHhCCCC----
Confidence 599999999986432 244667888999999999999988654 2 25899999986553110
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH- 276 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~- 276 (358)
...+.++..+..+...|+.+|++.+.+++.++.+. |+++++++||.+.++......
T Consensus 158 -------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~ 214 (346)
T 4egb_A 158 -------------------KTGRFTEETPLAPNSPYSSSKASADMIALAYYKTY----QLPVIVTRCSNNYGPYQYPEKL 214 (346)
T ss_dssp -------------------SSCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSH
T ss_pred -------------------cCCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeecceeCcCCCccch
Confidence 01122233445566789999999999999998775 899999999999998553221
Q ss_pred hh-hhhhhcc-----hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 277 IP-LFRLLFP-----PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 277 ~~-~~~~~~~-----~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.+ +...... .+ .......++.++|+|++++.++..+. .|..+...++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~~i~~~ 268 (346)
T 4egb_A 215 IPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR---VGEVYNIGGN 268 (346)
T ss_dssp HHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC---TTCEEEECCS
T ss_pred HHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC---CCCEEEECCC
Confidence 11 1111000 00 00011235779999999999998764 5666655554
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=179.35 Aligned_cols=244 Identities=13% Similarity=0.107 Sum_probs=156.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-----------------HHHHHhcCCCCceEEEEecC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-----------------RAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-----------------~~~~~~~~~~~~i~~~~~Dl 104 (358)
.-++.++|||||+|.||++++++|+++| +.|++++|+..... ...+.......++.++.+|+
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl 86 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDI 86 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCC-CeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCC
Confidence 4578899999999999999999999999 59999988753321 11111111235788999999
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs 184 (358)
++.+++.++++.. ++|+||||||...... ...+++.+...+++|+.++..+++++.+... +.+||++|
T Consensus 87 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~-----~~~~V~~S 154 (404)
T 1i24_A 87 CDFEFLAESFKSF-----EPDSVVHFGEQRSAPY--SMIDRSRAVYTQHNNVIGTLNVLFAIKEFGE-----ECHLVKLG 154 (404)
T ss_dssp TSHHHHHHHHHHH-----CCSEEEECCSCCCHHH--HTSCHHHHHHHHHHHHHHHHHHHHHHHHHCT-----TCEEEEEC
T ss_pred CCHHHHHHHHhcc-----CCCEEEECCCCCCccc--hhhCccchhhhHHHHHHHHHHHHHHHHHhCC-----CcEEEEeC
Confidence 9999999888765 5999999999753211 1225667788999999999999999876521 14999999
Q ss_pred cCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecC
Q 018331 185 SITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYP 264 (358)
Q Consensus 185 S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~P 264 (358)
|...+. ... .| .+-.+...-..+.. .....+..+...|+.||++.+.+++.++.++ |+++++|+|
T Consensus 155 S~~vyg-~~~--~~--~~E~~~~~~~~~~~------~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ivrp 219 (404)
T 1i24_A 155 TMGEYG-TPN--ID--IEEGYITITHNGRT------DTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQ 219 (404)
T ss_dssp CGGGGC-CCS--SC--BCSSEEEEEETTEE------EEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEE
T ss_pred cHHHhC-CCC--CC--CCcccccccccccc------ccccCCCCCCChhHHHHHHHHHHHHHHHHhc----CCeEEEEec
Confidence 976542 110 00 00000000000000 0000123445689999999999999998876 899999999
Q ss_pred CcccCCcccccc---------------hhhhhhhc-chhHH---------hhhcCccchhHHhhhhhhhhcCCC
Q 018331 265 GCIATTGLFREH---------------IPLFRLLF-PPFQK---------YITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 265 G~v~t~~~~~~~---------------~~~~~~~~-~~~~~---------~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
|.|.++...... ......+. ..... .....++.++|+|++++.++..+.
T Consensus 220 ~~v~Gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~ 293 (404)
T 1i24_A 220 GVVYGVKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPA 293 (404)
T ss_dssp CEEECSCCTTGGGSGGGCCCCCCSTTTCCHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCC
T ss_pred ceeeCCCCCccccccccccccccccchhhHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcc
Confidence 999998542100 00001110 00000 011236789999999999997653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.4e-21 Score=169.35 Aligned_cols=216 Identities=12% Similarity=0.086 Sum_probs=152.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++|||||+|+||++++++|+++| +.|++++|+.++.+. ...++.++.+|+++.+++.++++ ++|
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~-------~~d 69 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRG-FEVTAVVRHPEKIKI-------ENEHLKVKKADVSSLDEVCEVCK-------GAD 69 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTT-CEEEEECSCGGGCCC-------CCTTEEEECCCTTCHHHHHHHHT-------TCS
T ss_pred CEEEEEcCCchHHHHHHHHHHHCC-CEEEEEEcCcccchh-------ccCceEEEEecCCCHHHHHHHhc-------CCC
Confidence 689999999999999999999999 699999999754321 23678999999999999888776 689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||..... ...+++|+.++..+++++... + ..++|++||...+..... ..
T Consensus 70 ~vi~~a~~~~~~-----------~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~~~~~-----~~---- 123 (227)
T 3dhn_A 70 AVISAFNPGWNN-----------PDIYDETIKVYLTIIDGVKKA----G--VNRFLMVGGAGSLFIAPG-----LR---- 123 (227)
T ss_dssp EEEECCCC-----------------CCSHHHHHHHHHHHHHHHT----T--CSEEEEECCSTTSEEETT-----EE----
T ss_pred EEEEeCcCCCCC-----------hhHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCChhhccCCCC-----Cc----
Confidence 999999865211 126889999999888887543 2 259999999876632100 00
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
.+..+..+...|+.+|++.+.+.+.++++ .|+++++++||.+.++........... ..
T Consensus 124 ----------------~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ilrp~~v~g~~~~~~~~~~~~--~~ 181 (227)
T 3dhn_A 124 ----------------LMDSGEVPENILPGVKALGEFYLNFLMKE----KEIDWVFFSPAADMRPGVRTGRYRLGK--DD 181 (227)
T ss_dssp ----------------GGGTTCSCGGGHHHHHHHHHHHHHTGGGC----CSSEEEEEECCSEEESCCCCCCCEEES--SB
T ss_pred ----------------cccCCcchHHHHHHHHHHHHHHHHHHhhc----cCccEEEEeCCcccCCCccccceeecC--CC
Confidence 01113345678999999988888777654 499999999999988754322211000 00
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.+.......++.++|+|++++.++..+.. .|+-+...++
T Consensus 182 ~~~~~~~~~~i~~~Dva~ai~~~l~~~~~--~g~~~~~~~~ 220 (227)
T 3dhn_A 182 MIVDIVGNSHISVEDYAAAMIDELEHPKH--HQERFTIGYL 220 (227)
T ss_dssp CCCCTTSCCEEEHHHHHHHHHHHHHSCCC--CSEEEEEECC
T ss_pred cccCCCCCcEEeHHHHHHHHHHHHhCccc--cCcEEEEEee
Confidence 00001113478999999999999998753 6666665554
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=182.05 Aligned_cols=229 Identities=14% Similarity=0.072 Sum_probs=155.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHh--CCCcEEEEEecChHHHHHHHH-------HhcCCCCceEEEEecCCCHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAE--TGKWHIIMACRDFLKAERAAK-------SAGMAKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~--~Ga~~Vi~~~r~~~~~~~~~~-------~~~~~~~~i~~~~~Dl~~~~~i~ 111 (358)
++++++++|||||+|+||+++++.|++ .| +.|++++|+......... .....+.++.++.+|+++.+++.
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~ 84 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPK-AKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLR 84 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTT-SEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCC-CeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHH
Confidence 468899999999999999999999999 89 599999997542111000 01112346799999999999887
Q ss_pred HHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCC
Q 018331 112 QFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTN 191 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~ 191 (358)
++ ...++|+||||||.... +.+.++..+++|+.++..+++++.. .+ ++||++||...+.
T Consensus 85 ~~------~~~~~D~vih~A~~~~~-------~~~~~~~~~~~Nv~gt~~ll~aa~~----~~---~~~V~~SS~~vyg- 143 (362)
T 3sxp_A 85 RL------EKLHFDYLFHQAAVSDT-------TMLNQELVMKTNYQAFLNLLEIARS----KK---AKVIYASSAGVYG- 143 (362)
T ss_dssp HH------TTSCCSEEEECCCCCGG-------GCCCHHHHHHHHTHHHHHHHHHHHH----TT---CEEEEEEEGGGGC-
T ss_pred Hh------hccCCCEEEECCccCCc-------cccCHHHHHHHHHHHHHHHHHHHHH----cC---CcEEEeCcHHHhC-
Confidence 76 23489999999996421 3456788999999999999998843 22 5799999965442
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
... .+.++..+..+...|+.||++.+.+++.++.+ +.+..|+|+.+.+|+
T Consensus 144 ~~~------------------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~~~~~lR~~~v~Gp~ 193 (362)
T 3sxp_A 144 NTK------------------------APNVVGKNESPENVYGFSKLCMDEFVLSHSND------NVQVGLRYFNVYGPR 193 (362)
T ss_dssp SCC------------------------SSBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT------SCEEEEEECSEESTT
T ss_pred CCC------------------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHhcc------CCEEEEEeCceeCcC
Confidence 100 01223334455678999999988888877644 678889999888876
Q ss_pred ccccch--hhhhhhcchh----------HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 272 LFREHI--PLFRLLFPPF----------QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 272 ~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
...... .+...+.... .......++.++|+|+++++++..+. +| .+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~---~g-~~~i~~ 255 (362)
T 3sxp_A 194 EFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK---SG-VYNVGY 255 (362)
T ss_dssp CGGGGGGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSS---CE-EEEESC
T ss_pred CCCCCcchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCC---CC-EEEeCC
Confidence 533210 1111111000 00011236789999999999998753 57 554444
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=174.22 Aligned_cols=226 Identities=10% Similarity=0.025 Sum_probs=152.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-HHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+|++|||||+|+||++++++|+++| +.|++++|+..... ...+.+.. .+.++.++.+|+++.+++.++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV-- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH--
T ss_pred CCEEEEECCCChHHHHHHHHHHHCC-CEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhc--
Confidence 4689999999999999999999999 59999999864321 11111111 1357889999999999999988865
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||..... .+.++++..+++|+.++..+++++.+...+. .++||++||...+....
T Consensus 78 ---~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~---~~~iv~~SS~~v~g~~~------ 140 (372)
T 1db3_A 78 ---QPDEVYNLGAMSHVA-----VSFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELYGLVQ------ 140 (372)
T ss_dssp ---CCSEEEECCCCCTTT-----TTTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGGTTCC------
T ss_pred ---CCCEEEECCcccCcc-----ccccCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEeCChhhhCCCC------
Confidence 689999999975332 2445678889999999999999998765432 26999999976552110
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~ 278 (358)
..+.++..+..+...|+.||++.+.+++.++.++ ++.+..+.|..+.++....... .
T Consensus 141 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~r~~~~~gp~~~~~~~~~ 198 (372)
T 1db3_A 141 ------------------EIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRRGETFVTR 198 (372)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------CCCCCccCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCeEEEEECCccCCCCCCcchhh
Confidence 0012222344456789999999999999999876 6777777777776664322211 0
Q ss_pred hhhhhc-ch---------hH-HhhhcCccchhHHhhhhhhhhcCC
Q 018331 279 LFRLLF-PP---------FQ-KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 279 ~~~~~~-~~---------~~-~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
...... .. +. ......++.++|+|++++.++..+
T Consensus 199 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~ 243 (372)
T 1db3_A 199 KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE 243 (372)
T ss_dssp HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcC
Confidence 000000 00 00 011124689999999999998764
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=171.10 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=147.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~~iD 125 (358)
++|||||+|+||+++++.|+++| +.|++++|+.+..+.. .++.++++|+++ .+++.++++ ++|
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~--------~~~~~~~~D~~d~~~~~~~~~~-------~~d 65 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTD-YQIYAGARKVEQVPQY--------NNVKAVHFDVDWTPEEMAKQLH-------GMD 65 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-CEEEEEESSGGGSCCC--------TTEEEEECCTTSCHHHHHTTTT-------TCS
T ss_pred eEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCccchhhc--------CCceEEEecccCCHHHHHHHHc-------CCC
Confidence 69999999999999999999999 6999999997543221 578999999999 887776654 799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||.... ..+++|+.++..+++++.. .+ .++||++||..+..... +.
T Consensus 66 ~vi~~ag~~~~-------------~~~~~n~~~~~~l~~a~~~----~~--~~~iv~~SS~~~~~~~~---------~~- 116 (219)
T 3dqp_A 66 AIINVSGSGGK-------------SLLKVDLYGAVKLMQAAEK----AE--VKRFILLSTIFSLQPEK---------WI- 116 (219)
T ss_dssp EEEECCCCTTS-------------SCCCCCCHHHHHHHHHHHH----TT--CCEEEEECCTTTTCGGG---------CC-
T ss_pred EEEECCcCCCC-------------CcEeEeHHHHHHHHHHHHH----hC--CCEEEEECcccccCCCc---------cc-
Confidence 99999998631 2688999999998888743 22 26999999987653110 00
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
+ .+......|+.+|++.+.+++ ...|+++++++||.+.++....... + .
T Consensus 117 -----------------e-~~~~~~~~Y~~sK~~~e~~~~-------~~~~i~~~ilrp~~v~g~~~~~~~~-~-----~ 165 (219)
T 3dqp_A 117 -----------------G-AGFDALKDYYIAKHFADLYLT-------KETNLDYTIIQPGALTEEEATGLID-I-----N 165 (219)
T ss_dssp -----------------S-HHHHHTHHHHHHHHHHHHHHH-------HSCCCEEEEEEECSEECSCCCSEEE-E-----S
T ss_pred -----------------c-cccccccHHHHHHHHHHHHHH-------hccCCcEEEEeCceEecCCCCCccc-c-----C
Confidence 0 122346789999999888776 2359999999999999874332211 0 0
Q ss_pred hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 286 PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 286 ~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.....++.++|+|+++++++..+. ..|+.+..+++
T Consensus 166 ----~~~~~~i~~~Dva~~i~~~l~~~~--~~g~~~~i~~g 200 (219)
T 3dqp_A 166 ----DEVSASNTIGDVADTIKELVMTDH--SIGKVISMHNG 200 (219)
T ss_dssp ----SSCCCCEEHHHHHHHHHHHHTCGG--GTTEEEEEEEC
T ss_pred ----CCcCCcccHHHHHHHHHHHHhCcc--ccCcEEEeCCC
Confidence 223457899999999999998864 35777776544
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.6e-21 Score=178.35 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=158.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++|||||+|+||++++++|+++| +.|++++|+....... ...++.++.+|+++.+ +.++++ . |
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~~~~~~~Dl~d~~-~~~~~~-------~-d 64 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELG-YEVVVVDNLSSGRREF------VNPSAELHVRDLKDYS-WGAGIK-------G-D 64 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECCCSSCCGGG------SCTTSEEECCCTTSTT-TTTTCC-------C-S
T ss_pred CEEEEECCCChHHHHHHHHHHhCC-CEEEEEeCCCCCchhh------cCCCceEEECccccHH-HHhhcC-------C-C
Confidence 479999999999999999999999 5999999975432211 1357889999999986 544432 3 9
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||.... ..+.+.++..+++|+.++..+++++...- .++||++||...+...
T Consensus 65 ~vih~A~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~a~~~~~------~~~iv~~SS~~vyg~~------------- 120 (312)
T 3ko8_A 65 VVFHFAANPEV-----RLSTTEPIVHFNENVVATFNVLEWARQTG------VRTVVFASSSTVYGDA------------- 120 (312)
T ss_dssp EEEECCSSCSS-----SGGGSCHHHHHHHHHHHHHHHHHHHHHHT------CCEEEEEEEGGGGCSC-------------
T ss_pred EEEECCCCCCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHcC------CCEEEEeCcHHHhCCC-------------
Confidence 99999996422 23556788899999999999999985541 2599999998765311
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~~ 284 (358)
...+.++..+..+...|+.+|++.+.+++.++.++ |+++++++||.+.+++....... +.....
T Consensus 121 -----------~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~g~~~~~~~~~~~~~~~~ 185 (312)
T 3ko8_A 121 -----------DVIPTPEEEPYKPISVYGAAKAAGEVMCATYARLF----GVRCLAVRYANVVGPRLRHGVIYDFIMKLR 185 (312)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCSSHHHHHHHHHH
T ss_pred -----------CCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccccCcCCCCChHHHHHHHHH
Confidence 01122233455567789999999999999999886 89999999999999865432211 111110
Q ss_pred ---c---hh-HHhhhcCccchhHHhhhhhhhhcCCC-CCCCceeeecCCC
Q 018331 285 ---P---PF-QKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKD 326 (358)
Q Consensus 285 ---~---~~-~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d~~ 326 (358)
. .+ .......++.++|+|+++++++..+. ....|..+...++
T Consensus 186 ~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~ 235 (312)
T 3ko8_A 186 RNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLALNVGNV 235 (312)
T ss_dssp HCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSEEEEEESCS
T ss_pred hCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCCcEEEEcCC
Confidence 0 00 01112346789999999999998611 1235666665553
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=174.38 Aligned_cols=223 Identities=13% Similarity=0.094 Sum_probs=156.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+|+||++++++|+++| ..|++..|+....+. ....+.++.+|+++ +++.++++ ++|
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~-------~~~~~~~~~~Dl~~-~~~~~~~~-------~~d 65 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEF-------VNEAARLVKADLAA-DDIKDYLK-------GAE 65 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGG-------SCTTEEEECCCTTT-SCCHHHHT-------TCS
T ss_pred CEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhh-------cCCCcEEEECcCCh-HHHHHHhc-------CCC
Confidence 479999999999999999999999 577777665432211 13568899999999 88777765 799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+|+.... ..+.+.++..+++|+.++..+++++... + .++||++||...+...
T Consensus 66 ~vih~a~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~~~~~~----~--~~~iv~~SS~~vyg~~------------- 121 (313)
T 3ehe_A 66 EVWHIAANPDV-----RIGAENPDEIYRNNVLATYRLLEAMRKA----G--VSRIVFTSTSTVYGEA------------- 121 (313)
T ss_dssp EEEECCCCCCC-----C-CCCCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEECCGGGGCSC-------------
T ss_pred EEEECCCCCCh-----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----C--CCeEEEeCchHHhCcC-------------
Confidence 99999996422 2355678899999999999999986543 2 2599999997765211
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~~ 284 (358)
...+.++..+..+...|+.+|++.+.+++.++.++ |+++++++||.+.++........ +.....
T Consensus 122 -----------~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~~ 186 (313)
T 3ehe_A 122 -----------KVIPTPEDYPTHPISLYGASKLACEALIESYCHTF----DMQAWIYRFANVIGRRSTHGVIYDFIMKLK 186 (313)
T ss_dssp -----------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEECSCEESTTCCCSHHHHHHHHHH
T ss_pred -----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCCEEEEeeccccCcCCCcChHHHHHHHHH
Confidence 01122233355567789999999999999999876 89999999999999854432211 111100
Q ss_pred c---h---hH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 285 P---P---FQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 285 ~---~---~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. . +. ......++.++|+|+++++++... ..|..+...++
T Consensus 187 ~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~---~~~~~~ni~~~ 232 (313)
T 3ehe_A 187 RNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGD---ERVNIFNIGSE 232 (313)
T ss_dssp HCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCC---SSEEEEECCCS
T ss_pred cCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccC---CCCceEEECCC
Confidence 0 0 00 001234688999999999999832 35556655543
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.5e-20 Score=176.85 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=137.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHH-hCCCcEEEEEecChHH---------HHHH---HHHhcCC--CCc---eEEEEecCCC
Q 018331 45 KGSVIITGASSGLGLATAKALA-ETGKWHIIMACRDFLK---------AERA---AKSAGMA--KEN---YTIMHLDLAS 106 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La-~~Ga~~Vi~~~r~~~~---------~~~~---~~~~~~~--~~~---i~~~~~Dl~~ 106 (358)
++++|||||+|+||++++++|+ ++| +.|++++|+... .+.. .+.+... ..+ +.++.+|+++
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCC-CEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence 3589999999999999999999 999 599999987533 2333 2222211 124 8899999999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.+++.+++++ ++++|+||||||..... .+.+.++..+++|+.++..+++++... + .++||++||.
T Consensus 81 ~~~~~~~~~~----~~~~d~vih~A~~~~~~-----~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~iv~~SS~ 145 (397)
T 1gy8_A 81 EDFLNGVFTR----HGPIDAVVHMCAFLAVG-----ESVRDPLKYYDNNVVGILRLLQAMLLH----K--CDKIIFSSSA 145 (397)
T ss_dssp HHHHHHHHHH----SCCCCEEEECCCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEG
T ss_pred HHHHHHHHHh----cCCCCEEEECCCccCcC-----cchhhHHHHHHHHhHHHHHHHHHHHHh----C--CCEEEEECCH
Confidence 9998877763 45699999999976321 134677889999999999999987542 2 2699999997
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
..+. ...... + .....+.++..+..+...|+.||++.+.+++.++.++ |+++++++||.
T Consensus 146 ~v~g-~~~~~~--------~--------~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilRp~~ 204 (397)
T 1gy8_A 146 AIFG-NPTMGS--------V--------STNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFN 204 (397)
T ss_dssp GGTB-SCCC---------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECE
T ss_pred HHhC-CCCccc--------c--------cccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH----CCcEEEEeccc
Confidence 6542 111000 0 0001122333344556789999999999999999886 89999999999
Q ss_pred ccCCc
Q 018331 267 IATTG 271 (358)
Q Consensus 267 v~t~~ 271 (358)
+.++.
T Consensus 205 v~G~~ 209 (397)
T 1gy8_A 205 ACGAH 209 (397)
T ss_dssp EECCC
T ss_pred eeCCC
Confidence 98874
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.2e-21 Score=178.65 Aligned_cols=229 Identities=17% Similarity=0.110 Sum_probs=146.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHH---HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~---~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
||++|||||+|+||++++++|+++| +.|+++.| +... .... ..+.....++.++.+|+++.+++.++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~~~~~~~~~----- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENG-YSVNTTIRADPERKRDVSFL-TNLPGASEKLHFFNADLSNPDSFAAAIE----- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEECCCC----CCCHHH-HTSTTHHHHEEECCCCTTCGGGGHHHHT-----
T ss_pred CCEEEEECChhHHHHHHHHHHHHCC-CEEEEEEeCCccchhHHHHH-HhhhccCCceEEEecCCCCHHHHHHHHc-----
Confidence 5789999999999999999999999 59998888 5422 1111 1121112357889999999998887765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+|+|||+|+... .. ..+.++..+++|+.|++.+++++.+.. + .++||++||..++.+......
T Consensus 74 --~~d~vih~A~~~~----~~--~~~~~~~~~~~nv~gt~~l~~aa~~~~---~--~~~iV~~SS~~~~~~~~~~~~--- 137 (322)
T 2p4h_X 74 --GCVGIFHTASPID----FA--VSEPEEIVTKRTVDGALGILKACVNSK---T--VKRFIYTSSGSAVSFNGKDKD--- 137 (322)
T ss_dssp --TCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHTTCS---S--CCEEEEEEEGGGTSCSSSCCS---
T ss_pred --CCCEEEEcCCccc----CC--CCChHHHHHHHHHHHHHHHHHHHHhcC---C--ccEEEEeccHHHcccCCCCCe---
Confidence 5899999996431 10 112245689999999999999986541 1 269999999876532110000
Q ss_pred CCccccccccccCCCCCCCCCCCCCC---------CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGD---------FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
..++... .+....|+.||++.+.+++.++.+ .|+++++++||.+.+++
T Consensus 138 -------------------~~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~g~~ 194 (322)
T 2p4h_X 138 -------------------VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ----NGIDVVTLILPFIVGRF 194 (322)
T ss_dssp -------------------EECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECEEESCC
T ss_pred -------------------ecCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh----cCCcEEEEcCCceECCC
Confidence 0001100 011126999999877666665543 48999999999999986
Q ss_pred ccccchhhhhhhcchhH----Hhhhc--CccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 272 LFREHIPLFRLLFPPFQ----KYITK--GYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
................. ..... .++.++|+|+++++++..+. .+|.|.
T Consensus 195 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~g~~~ 248 (322)
T 2p4h_X 195 VCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSV--PGGRYN 248 (322)
T ss_dssp CSSSCCHHHHHHTHHHHSCGGGCCEEEEEEEEHHHHHHHHHHHHHSCC--CCEEEE
T ss_pred CCCCCCchHHHHHHHHhCCCccCcCCCcCEEEHHHHHHHHHHHhhCcC--CCCCEE
Confidence 53321111111100000 00101 37899999999999997643 577765
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-20 Score=176.31 Aligned_cols=240 Identities=13% Similarity=0.139 Sum_probs=161.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHH-HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 46 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLK-AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~-~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++|||||+|+||++++++|+++ | +.|++++|+... .....+.+. ..++.++.+|+++.+++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~------- 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPD-VHVTVLDKLTYAGNKANLEAIL--GDRVELVVGDIADAELVDKLAA------- 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTT-CEEEEEECCCTTCCGGGTGGGC--SSSEEEEECCTTCHHHHHHHHT-------
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCC-CEEEEEeCCCCCCChhHHhhhc--cCCeEEEECCCCCHHHHHHHhh-------
Confidence 58999999999999999999999 7 599999986421 111111121 3578999999999998887765
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
.+|+||||||.... +.+.+.++..+++|+.++..+++++.+. + ++||++||...+....... |..
T Consensus 75 ~~d~vih~A~~~~~-----~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~---~~~v~~SS~~vyg~~~~~~-~~~-- 139 (348)
T 1oc2_A 75 KADAIVHYAAESHN-----DNSLNDPSPFIHTNFIGTYTLLEAARKY----D---IRFHHVSTDEVYGDLPLRE-DLP-- 139 (348)
T ss_dssp TCSEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHH----T---CEEEEEEEGGGGCCBCCGG-GST--
T ss_pred cCCEEEECCcccCc-----cchhhCHHHHHHHHHHHHHHHHHHHHHh----C---CeEEEecccceeCCCcccc-ccc--
Confidence 56999999997531 1234567889999999999999999876 1 4999999986542110000 000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-hh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP-LF 280 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~-~~ 280 (358)
........+.++..+..+...|+.+|++.+.+++.++.++ |+++++++||.+.+++..... .+ +.
T Consensus 140 ---------~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilrp~~v~G~~~~~~~~~~~~~ 206 (348)
T 1oc2_A 140 ---------GHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQHIEKFIPRQI 206 (348)
T ss_dssp ---------TTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTCCTTSHHHHHH
T ss_pred ---------ccccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeceeeCCCCCccchHHHHH
Confidence 0000001123333455566789999999999999998876 899999999999998653211 11 11
Q ss_pred hhhcc-----hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFP-----PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~-----~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... .+ .......++.++|+|+++++++..+ .+|+.+..+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~---~~g~~~~i~~~ 255 (348)
T 1oc2_A 207 TNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKG---RMGETYLIGAD 255 (348)
T ss_dssp HHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHC---CTTCEEEECCS
T ss_pred HHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCC---CCCCeEEeCCC
Confidence 11000 00 0001234688999999999999754 35666666654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=216.67 Aligned_cols=182 Identities=19% Similarity=0.190 Sum_probs=140.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH---HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~---~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|++|||||++|||++++++|+++|+.+|++++|+..+ .....+++...+.++.++.||+++.++++++++++.+
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~- 1961 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ- 1961 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH-
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh-
Confidence 689999999999999999999999998668899998533 2344455555567899999999999999999999874
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||.... ..+.+++.++|++.+++|+.|++++.+++.+.+.+. ++||++||..+..
T Consensus 1962 ~g~id~lVnnAgv~~~-~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~----g~iV~iSS~ag~~---------- 2026 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRD-AVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL----DYFVIFSSVSCGR---------- 2026 (2512)
T ss_dssp HSCEEEEEECCCC-----------------CTTTTHHHHHHHHHHHHHHCTTC----CEEEEECCHHHHT----------
T ss_pred cCCCcEEEECCCcCCC-CchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC----CEEEEecchhhcC----------
Confidence 7899999999998754 467788999999999999999999999999988764 6999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.+++..|+++|+++++|++....+ |+...++..|.+...+
T Consensus 2027 -------------------------g~~g~~~Y~aaKaal~~l~~~rr~~-----Gl~~~a~~~g~~~~~G 2067 (2512)
T 2vz8_A 2027 -------------------------GNAGQANYGFANSAMERICEKRRHD-----GLPGLAVQWGAIGDVG 2067 (2512)
T ss_dssp -------------------------TCTTCHHHHHHHHHHHHHHHHHHHT-----TSCCCEEEECCBCTTS
T ss_pred -------------------------CCCCcHHHHHHHHHHHHHHHHHHHC-----CCcEEEEEccCcCCcc
Confidence 4567889999999999999976554 6777777777765443
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.6e-20 Score=175.51 Aligned_cols=227 Identities=12% Similarity=0.057 Sum_probs=154.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
|++|||||+|+||+++++.|+++| +.|++++|+... ++.....+...+. ++.++.+|+++.+++.++++.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 105 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI-- 105 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH--
T ss_pred CeEEEEcCCchHHHHHHHHHHHCC-CEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhc--
Confidence 789999999999999999999999 599999997543 1111111111123 7889999999999999988865
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||.... ..+.+.++..+++|+.++..+++++.+...+++. .++||++||...+....
T Consensus 106 ---~~d~Vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~-~~~~v~~SS~~vyg~~~------ 170 (381)
T 1n7h_A 106 ---KPDEVYNLAAQSHV-----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMFGSTP------ 170 (381)
T ss_dssp ---CCSEEEECCSCCCH-----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGGTTSC------
T ss_pred ---CCCEEEECCcccCc-----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCC-ccEEEEeCcHHHhCCCC------
Confidence 68999999997532 1234678889999999999999999998765321 36999999987552110
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
. +.++..+..+...|+.+|++.+.+++.++.++ ++.+..+.|+.+.+|+......
T Consensus 171 ------------------~-~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~r~~~~~gp~~~~~~~~~ 227 (381)
T 1n7h_A 171 ------------------P-PQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRRGENFVTR 227 (381)
T ss_dssp ------------------S-SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------C-CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeCceeCCCCCCcchhH
Confidence 0 12222344556789999999999999998876 5666656665555553322110
Q ss_pred ---hhhhhhc---ch---hH-HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 278 ---PLFRLLF---PP---FQ-KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 278 ---~~~~~~~---~~---~~-~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.+..... .. +. ......++.++|+|+++++++..+.
T Consensus 228 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~ 273 (381)
T 1n7h_A 228 KITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK 273 (381)
T ss_dssp HHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC
Confidence 0000000 00 00 0112347889999999999998653
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=7.8e-20 Score=174.65 Aligned_cols=235 Identities=10% Similarity=0.031 Sum_probs=159.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
|++|||||+|+||+++++.|+++| +.|++++|+... ++...+.... ...++.++.+|+++.+++.++++.+
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 101 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 101 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEECCCchHHHHHHHHHHHCC-CEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhc--
Confidence 689999999999999999999999 599999987532 1111100000 2346889999999999999988865
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||..... .+.++++..+++|+.++..+++++.+...+. .++||++||...+....
T Consensus 102 ---~~d~vih~A~~~~~~-----~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~---~~~iv~~SS~~~~~~~~------ 164 (375)
T 1t2a_A 102 ---KPTEIYNLGAQSHVK-----ISFDLAEYTADVDGVGTLRLLDAVKTCGLIN---SVKFYQASTSELYGKVQ------ 164 (375)
T ss_dssp ---CCSEEEECCSCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGTCSCS------
T ss_pred ---CCCEEEECCCccccc-----ccccCHHHHHHHHHHHHHHHHHHHHHhCCCc---cceEEEecchhhhCCCC------
Confidence 689999999975321 1346778899999999999999998765422 26999999987653110
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~ 278 (358)
..+.++..+..+...|+.+|++.+.+++.++.++ ++.+..+.|+.+.++....... .
T Consensus 165 ------------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~~~gp~~~~~~~~~ 222 (375)
T 1t2a_A 165 ------------------EIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPRRGANFVTR 222 (375)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------CCCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEecccccCCCCCCCcchH
Confidence 0112222334456789999999999999998876 7888888988887764332211 0
Q ss_pred hh-hhhcchhH----------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 LF-RLLFPPFQ----------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~~-~~~~~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. ..+..... ......++.++|+|++++.++..+. .|.|...++
T Consensus 223 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~---~~~~ni~~~ 277 (375)
T 1t2a_A 223 KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE---PEDFVIATG 277 (375)
T ss_dssp HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS---CCCEEECCS
T ss_pred HHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC---CceEEEeCC
Confidence 00 00000000 0011236789999999999997653 355544443
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=5.8e-20 Score=172.58 Aligned_cols=228 Identities=12% Similarity=-0.021 Sum_probs=155.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.-.++++|||||+|+||+++++.|+++| +.|++++|+..... ...+.+. ...++.++.+|+++.+++.++++.+
T Consensus 10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-- 85 (335)
T 1rpn_A 10 HGSMTRSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-- 85 (335)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH--
T ss_pred ccccCCeEEEECCCChHHHHHHHHHHHCC-CeEEEEeCCCccccccchhhcc-ccCceEEEECCCCCHHHHHHHHHHc--
Confidence 34567899999999999999999999999 59999999754311 1112221 2346889999999999999988865
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||..... .+.+.++..+++|+.++..+++++.+.-. .+++|++||...+....
T Consensus 86 ---~~d~Vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-----~~~~v~~SS~~v~g~~~------ 146 (335)
T 1rpn_A 86 ---QPQEVYNLAAQSFVG-----ASWNQPVTTGVVDGLGVTHLLEAIRQFSP-----ETRFYQASTSEMFGLIQ------ 146 (335)
T ss_dssp ---CCSEEEECCSCCCHH-----HHTTSHHHHHHHHTHHHHHHHHHHHHHCT-----TSEEEEEEEGGGGCSCS------
T ss_pred ---CCCEEEECccccchh-----hhhhChHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEEeCHHHhCCCC------
Confidence 689999999975321 12345678899999999999999876521 15999999976542110
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~ 278 (358)
..+.++..+..+...|+.+|++.+.+++.++.++ ++.+..++|+.+.++....... .
T Consensus 147 ------------------~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~~~~~~~~ 204 (335)
T 1rpn_A 147 ------------------AERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLRGIEFVTR 204 (335)
T ss_dssp ------------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHHH
T ss_pred ------------------CCCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc----CCcEEEEeeCcccCCCCCCCcchH
Confidence 0011222334445689999999999999998776 7888899999988875433221 0
Q ss_pred hhhhhc-chhH----------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 279 LFRLLF-PPFQ----------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 279 ~~~~~~-~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
....+. .... ......++.++|+|++++.++..+.
T Consensus 205 ~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~ 250 (335)
T 1rpn_A 205 KVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 250 (335)
T ss_dssp HHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC
Confidence 001000 0000 0011236788999999999997653
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-20 Score=176.19 Aligned_cols=223 Identities=15% Similarity=0.121 Sum_probs=149.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.++|||||+|+||++++++|+++| +.|++++|+....+. +. ..++.++.+|+++.+++.++++ ++|
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~----l~--~~~~~~~~~Dl~d~~~~~~~~~-------~~d 79 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAG-HDLVLIHRPSSQIQR----LA--YLEPECRVAEMLDHAGLERALR-------GLD 79 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTT-CEEEEEECTTSCGGG----GG--GGCCEEEECCTTCHHHHHHHTT-------TCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCC-CEEEEEecChHhhhh----hc--cCCeEEEEecCCCHHHHHHHHc-------CCC
Confidence 379999999999999999999999 699999998654322 11 1367899999999988877765 699
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||... ...+.++..+++|+.++..+++++.+.- .++||++||...+....... .
T Consensus 80 ~vih~a~~~~-------~~~~~~~~~~~~n~~~~~~l~~a~~~~~------~~~~v~~SS~~~~~~~~~~~---~----- 138 (342)
T 2x4g_A 80 GVIFSAGYYP-------SRPRRWQEEVASALGQTNPFYAACLQAR------VPRILYVGSAYAMPRHPQGL---P----- 138 (342)
T ss_dssp EEEEC-------------------CHHHHHHHHHHHHHHHHHHHT------CSCEEEECCGGGSCCCTTSS---C-----
T ss_pred EEEECCccCc-------CCCCCHHHHHHHHHHHHHHHHHHHHHcC------CCeEEEECCHHhhCcCCCCC---C-----
Confidence 9999999752 1345678889999999999999998752 25999999987653111000 0
Q ss_pred cccccccCCCCCCCCCCCCCCCch----hhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc-cccchhhh
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDG----AKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL-FREHIPLF 280 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~-~~~~~~~~ 280 (358)
. ++..+..+ ...|+.+|++.+.+++.++. . |+++++|+||.+.+++. ......+.
T Consensus 139 --------------~-~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~----~-g~~~~ilrp~~v~g~~~~~~~~~~~~ 198 (342)
T 2x4g_A 139 --------------G-HEGLFYDSLPSGKSSYVLCKWALDEQAREQAR----N-GLPVVIGIPGMVLGELDIGPTTGRVI 198 (342)
T ss_dssp --------------B-CTTCCCSSCCTTSCHHHHHHHHHHHHHHHHHH----T-TCCEEEEEECEEECSCCSSCSTTHHH
T ss_pred --------------C-CCCCCCCccccccChHHHHHHHHHHHHHHHhh----c-CCcEEEEeCCceECCCCccccHHHHH
Confidence 0 11222233 66899999999999888764 3 89999999999999855 21111111
Q ss_pred hhhcc---hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 281 RLLFP---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 281 ~~~~~---~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... .........++.++|+|+++++++..+.. |..+...++
T Consensus 199 ~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~---g~~~~v~~~ 244 (342)
T 2x4g_A 199 TAIGNGEMTHYVAGQRNVIDAAEAGRGLLMALERGRI---GERYLLTGH 244 (342)
T ss_dssp HHHHTTCCCEEECCEEEEEEHHHHHHHHHHHHHHSCT---TCEEEECCE
T ss_pred HHHHcCCCccccCCCcceeeHHHHHHHHHHHHhCCCC---CceEEEcCC
Confidence 11100 00000112367999999999999987542 556665553
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=173.47 Aligned_cols=225 Identities=13% Similarity=0.114 Sum_probs=154.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++| +.|++++|...... ..+ ..++.++.+|+++.+++.+++++. ++|+
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~r~~~~~~---~~~---~~~~~~~~~Dl~~~~~~~~~~~~~-----~~d~ 69 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARG-LEVAVLDNLATGKR---ENV---PKGVPFFRVDLRDKEGVERAFREF-----RPTH 69 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEECCCSSCCG---GGS---CTTCCEECCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCCcCch---hhc---ccCeEEEECCCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999999 59999988532110 011 135778999999999998887752 6899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||.... ..+.++++..+++|+.++..+++++... + .++||++||..+.++....
T Consensus 70 vi~~a~~~~~-----~~~~~~~~~~~~~N~~g~~~l~~a~~~~----~--~~~iv~~SS~~~~~g~~~~----------- 127 (311)
T 2p5y_A 70 VSHQAAQASV-----KVSVEDPVLDFEVNLLGGLNLLEACRQY----G--VEKLVFASTGGAIYGEVPE----------- 127 (311)
T ss_dssp EEECCSCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----T--CSEEEEEEEHHHHHCCCCT-----------
T ss_pred EEECccccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCChhhcCCCCC-----------
Confidence 9999997532 1234677889999999999999988642 2 2699999998322211000
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hhhhhhhcc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IPLFRLLFP 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~~~~~~~~ 285 (358)
..+.++..+..+...|+.||++.+.+++.+++++ |+++++++||.+.+++..... ..+...+..
T Consensus 128 -----------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~~~~~~~~~~~~~~ 192 (311)
T 2p5y_A 128 -----------GERAEETWPPRPKSPYAASKAAFEHYLSVYGQSY----GLKWVSLRYGNVYGPRQDPHGEAGVVAIFAE 192 (311)
T ss_dssp -----------TCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCSSSTTHHHHHHHH
T ss_pred -----------CCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHc----CCCEEEEeeccccCcCCCCCCcCcHHHHHHH
Confidence 0011122233445689999999999999998875 899999999999998653321 011111100
Q ss_pred -hhH--------------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 286 -PFQ--------------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 286 -~~~--------------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
... ......++.++|+|+++++++..+ |..+..++
T Consensus 193 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-----~~~~~i~~ 242 (311)
T 2p5y_A 193 RVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL-----EGIYNVGT 242 (311)
T ss_dssp HHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC-----CEEEEESC
T ss_pred HHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC-----CCEEEeCC
Confidence 000 001124678999999999999763 45555544
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.9e-20 Score=160.15 Aligned_cols=202 Identities=12% Similarity=0.093 Sum_probs=144.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++++||||+|+||++++++|+++| +.|++++|+..+... ....++.++.+|+++.+++.++++ .+
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g-~~V~~~~r~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~-------~~ 68 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS------EGPRPAHVVVGDVLQAADVDKTVA-------GQ 68 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS------SSCCCSEEEESCTTSHHHHHHHHT-------TC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCC-CeEEEEEeChhhccc------ccCCceEEEEecCCCHHHHHHHHc-------CC
Confidence 4789999999999999999999999 699999998754321 113578999999999998887765 58
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|..... + ..++|+.++..+++++.... .+++|++||...+... +
T Consensus 69 d~vi~~a~~~~~~------~------~~~~n~~~~~~~~~~~~~~~------~~~~v~~Ss~~~~~~~-----~------ 119 (206)
T 1hdo_A 69 DAVIVLLGTRNDL------S------PTTVMSEGARNIVAAMKAHG------VDKVVACTSAFLLWDP-----T------ 119 (206)
T ss_dssp SEEEECCCCTTCC------S------CCCHHHHHHHHHHHHHHHHT------CCEEEEECCGGGTSCT-----T------
T ss_pred CEEEECccCCCCC------C------ccchHHHHHHHHHHHHHHhC------CCeEEEEeeeeeccCc-----c------
Confidence 9999999975321 1 12478888888888776531 2599999998654200 0
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
........|+.+|++++.+++ + .|+++++++||.+........... ..
T Consensus 120 --------------------~~~~~~~~y~~~K~~~e~~~~----~----~~i~~~~lrp~~~~~~~~~~~~~~---~~- 167 (206)
T 1hdo_A 120 --------------------KVPPRLQAVTDDHIRMHKVLR----E----SGLKYVAVMPPHIGDQPLTGAYTV---TL- 167 (206)
T ss_dssp --------------------CSCGGGHHHHHHHHHHHHHHH----H----TCSEEEEECCSEEECCCCCSCCEE---ES-
T ss_pred --------------------cccccchhHHHHHHHHHHHHH----h----CCCCEEEEeCCcccCCCCCcceEe---cc-
Confidence 000156789999999888763 2 489999999999832212111110 00
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...+...+++++|+|+.+++++.++. .+|+.+..+++
T Consensus 168 ---~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~g 204 (206)
T 1hdo_A 168 ---DGRGPSRVISKHDLGHFMLRCLTTDE--YDGHSTYPSHQ 204 (206)
T ss_dssp ---SSCSSCSEEEHHHHHHHHHHTTSCST--TTTCEEEEECC
T ss_pred ---cCCCCCCccCHHHHHHHHHHHhcCcc--ccccceeeecc
Confidence 00111367899999999999998864 57887777664
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.8e-20 Score=174.78 Aligned_cols=237 Identities=11% Similarity=0.051 Sum_probs=156.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH------HHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~------~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+|++|||||+|+||++++++|+++| +.|++++|+... .....+.+.. .+.++.++.+|+++.+++.++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 80 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKY 80 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhc
Confidence 4789999999999999999999999 589888875321 1111111211 2357889999999999988887652
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++|+||||||..... .+.+.++..+++|+.++..+++++.. .+ .++||++||...+...
T Consensus 81 -----~~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~--~~~iv~~SS~~~~g~~----- 139 (348)
T 1ek6_A 81 -----SFMAVIHFAGLKAVG-----ESVQKPLDYYRVNLTGTIQLLEIMKA----HG--VKNLVFSSSATVYGNP----- 139 (348)
T ss_dssp -----CEEEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHH----TT--CCEEEEEEEGGGGCSC-----
T ss_pred -----CCCEEEECCCCcCcc-----chhhchHHHHHHHHHHHHHHHHHHHH----hC--CCEEEEECcHHHhCCC-----
Confidence 699999999975321 13456788999999999999987643 22 2699999997654210
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc---c
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL---F 273 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~---~ 273 (358)
. ..+.++..+. +....|+.+|++.+.+++.++.+ .+++.++.++||.+.++.. .
T Consensus 140 -~------------------~~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~lR~~~v~G~~~~g~~ 197 (348)
T 1ek6_A 140 -Q------------------YLPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA---DKTWNAVLLRYFNPTGAHASGCI 197 (348)
T ss_dssp -S------------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEECEEECCCTTSSC
T ss_pred -C------------------CCCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc---CCCcceEEEeeccccCCCccccc
Confidence 0 0111222222 23678999999999999998876 2469999999999887631 0
Q ss_pred c-c----chhhhhhhcchhH-----------------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 274 R-E----HIPLFRLLFPPFQ-----------------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 274 ~-~----~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. . ...+...+..... ......++.++|+|++++.++..+....++..+...+
T Consensus 198 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~~~~ni~~ 271 (348)
T 1ek6_A 198 GEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGT 271 (348)
T ss_dssp CCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred CcCcccchhhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCCceEEEeCC
Confidence 0 0 0011111111100 0011236789999999999987643122335555543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-20 Score=170.94 Aligned_cols=193 Identities=16% Similarity=0.141 Sum_probs=145.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|++|||||+|+||++++++|+++| +.|++++|+.... + ..++.++.+|+++.+++.++++ ++|
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~------~---~~~~~~~~~Dl~d~~~~~~~~~-------~~d 65 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLA-HEVRLSDIVDLGA------A---EAHEEIVACDLADAQAVHDLVK-------DCD 65 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTE-EEEEECCSSCCCC------C---CTTEEECCCCTTCHHHHHHHHT-------TCS
T ss_pred ceEEEECCCCHHHHHHHHHHHhCC-CEEEEEeCCCccc------c---CCCccEEEccCCCHHHHHHHHc-------CCC
Confidence 579999999999999999999999 6999999986421 1 1357889999999998887765 599
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||||... .+.++..+++|+.++..+++++.+. + .++||++||...+.....
T Consensus 66 ~vi~~a~~~~---------~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~iv~~SS~~~~~~~~~----------- 119 (267)
T 3ay3_A 66 GIIHLGGVSV---------ERPWNDILQANIIGAYNLYEAARNL----G--KPRIVFASSNHTIGYYPR----------- 119 (267)
T ss_dssp EEEECCSCCS---------CCCHHHHHHHTHHHHHHHHHHHHHT----T--CCEEEEEEEGGGSTTSBT-----------
T ss_pred EEEECCcCCC---------CCCHHHHHHHHHHHHHHHHHHHHHh----C--CCEEEEeCCHHHhCCCCC-----------
Confidence 9999999751 2346788999999999999998652 2 269999999876531100
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCccc-CCcccccchhhhhhhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIA-TTGLFREHIPLFRLLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~-t~~~~~~~~~~~~~~~ 284 (358)
..+.++..+..+...|+.+|++.+.+++.++.+ .|+++++++||.+. ++.. .
T Consensus 120 ------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~~~~~~-~---------- 172 (267)
T 3ay3_A 120 ------------TTRIDTEVPRRPDSLYGLSKCFGEDLASLYYHK----FDIETLNIRIGSCFPKPKD-A---------- 172 (267)
T ss_dssp ------------TSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHT----TCCCEEEEEECBCSSSCCS-H----------
T ss_pred ------------CCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHH----cCCCEEEEeceeecCCCCC-C----------
Confidence 011222334445678999999999999888654 48999999999984 3210 0
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.....++.++|+|+.++.++..+.
T Consensus 173 -----~~~~~~~~~~dva~~~~~~~~~~~ 196 (267)
T 3ay3_A 173 -----RMMATWLSVDDFMRLMKRAFVAPK 196 (267)
T ss_dssp -----HHHHHBCCHHHHHHHHHHHHHSSC
T ss_pred -----CeeeccccHHHHHHHHHHHHhCCC
Confidence 012346799999999999998764
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=176.68 Aligned_cols=224 Identities=14% Similarity=0.058 Sum_probs=153.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+.+++++|||||+|+||++++++|+++| +.|++++|+....... ...++.++.+|+++.+++.++++
T Consensus 26 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~------~~~~v~~~~~Dl~d~~~~~~~~~------ 92 (379)
T 2c5a_A 26 PSENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEHMTE------DMFCDEFHLVDLRVMENCLKVTE------ 92 (379)
T ss_dssp TTSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSSSCG------GGTCSEEEECCTTSHHHHHHHHT------
T ss_pred cccCCeEEEECCccHHHHHHHHHHHHCC-CeEEEEECCCccchhh------ccCCceEEECCCCCHHHHHHHhC------
Confidence 3467899999999999999999999999 5999999975432110 12467899999999998887764
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+|||+||..... ..+.+.++..+++|+.++..+++++... + .++||++||...+.... ...+...
T Consensus 93 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~~Nv~g~~~ll~a~~~~----~--~~~~V~~SS~~v~~~~~-~~~~~~~ 160 (379)
T 2c5a_A 93 -GVDHVFNLAADMGGM----GFIQSNHSVIMYNNTMISFNMIEAARIN----G--IKRFFYASSACIYPEFK-QLETTNV 160 (379)
T ss_dssp -TCSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHT----T--CSEEEEEEEGGGSCGGG-SSSSSSC
T ss_pred -CCCEEEECceecCcc----cccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEeehheeCCCC-CCCccCC
Confidence 699999999975321 0113457888999999999999988643 2 25999999976542110 0000000
Q ss_pred CccccccccccCCCCCCCCCCCCC--CCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc---
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGG--DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH--- 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~--- 276 (358)
..++.. +..+...|+.+|++.+.+++.++.+. |+++++|+||.+.++......
T Consensus 161 ------------------~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~G~~~~~~~~~~ 218 (379)
T 2c5a_A 161 ------------------SLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFGTWKGGRE 218 (379)
T ss_dssp ------------------EECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCCSSSCC
T ss_pred ------------------CcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH----CCCEEEEEeCceeCcCCCcccccc
Confidence 011111 23345689999999999999998775 899999999999998543211
Q ss_pred --h-hhhhhhcc--h-hH----HhhhcCccchhHHhhhhhhhhcCC
Q 018331 277 --I-PLFRLLFP--P-FQ----KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 277 --~-~~~~~~~~--~-~~----~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
. .+...... . +. ......++.++|+|++++.++..+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~ 264 (379)
T 2c5a_A 219 KAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 264 (379)
T ss_dssp CHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc
Confidence 1 11111100 0 00 001224678999999999999765
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.1e-20 Score=173.84 Aligned_cols=230 Identities=17% Similarity=0.167 Sum_probs=157.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhC---CC--cEEEEEecChHHH-HHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 47 SVIITGASSGLGLATAKALAET---GK--WHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~---Ga--~~Vi~~~r~~~~~-~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|||||+|+||++++++|+++ |. +.|++++|+.... ....+.+. ...++.++.+|+++.+++.+++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~------ 74 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVD-ADPRLRFVHGDIRDAGLLAREL------ 74 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGT-TCTTEEEEECCTTCHHHHHHHT------
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcc-cCCCeEEEEcCCCCHHHHHHHh------
Confidence 6999999999999999999996 61 3899888863210 01111111 1357899999999998887765
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||.... +.+.++++..+++|+.++..+++++.+... ++||++||...+....
T Consensus 75 -~~~d~Vih~A~~~~~-----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~------~~~v~~SS~~vyg~~~------- 135 (337)
T 1r6d_A 75 -RGVDAIVHFAAESHV-----DRSIAGASVFTETNVQGTQTLLQCAVDAGV------GRVVHVSTNQVYGSID------- 135 (337)
T ss_dssp -TTCCEEEECCSCCCH-----HHHHHCCHHHHHHHTHHHHHHHHHHHHTTC------CEEEEEEEGGGGCCCS-------
T ss_pred -cCCCEEEECCCccCc-----hhhhhCHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEecchHHhCCCC-------
Confidence 379999999997532 113456778899999999999999977532 5999999986542110
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~- 278 (358)
..+.++..+..+...|+.||++.+.+++.++.++ |+++++++||.+.+++..... .+
T Consensus 136 -----------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilrp~~v~G~~~~~~~~~~~ 194 (337)
T 1r6d_A 136 -----------------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQHPEKLIPL 194 (337)
T ss_dssp -----------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSHHHH
T ss_pred -----------------CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH----CCCEEEEEeeeeECCCCCCCChHHH
Confidence 0112222344556789999999999999998876 899999999999998643211 11
Q ss_pred hhhhhcc--hhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 LFRLLFP--PFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 ~~~~~~~--~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+...... ... ......++.++|+|++++.++..+ .+|..+...++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~---~~g~~~~v~~~ 245 (337)
T 1r6d_A 195 FVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGG---RAGEIYHIGGG 245 (337)
T ss_dssp HHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHC---CTTCEEEECCC
T ss_pred HHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCC---CCCCEEEeCCC
Confidence 1111000 000 001124678999999999999754 25666666654
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-20 Score=172.64 Aligned_cols=226 Identities=15% Similarity=0.111 Sum_probs=148.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++++++|||||+|+||++++++|+++| +.|++++|+...... .+.. -.++.++.+|+++.+++.++++..
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~---~l~~-~~~~~~~~~Dl~d~~~~~~~~~~~---- 88 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERG-DKVVGIDNFATGRRE---HLKD-HPNLTFVEGSIADHALVNQLIGDL---- 88 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGG---GSCC-CTTEEEEECCTTCHHHHHHHHHHH----
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCC-CEEEEEECCCccchh---hHhh-cCCceEEEEeCCCHHHHHHHHhcc----
Confidence 4678999999999999999999999999 599999997532111 1111 146889999999999998888752
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+||||||..... +.++++ +++|+.++..+++++.+. + .++||++||...+..... .+.
T Consensus 89 -~~D~vih~A~~~~~~------~~~~~~--~~~N~~~~~~l~~a~~~~----~--~~~iV~~SS~~~~g~~~~--~~~-- 149 (333)
T 2q1w_A 89 -QPDAVVHTAASYKDP------DDWYND--TLTNCVGGSNVVQAAKKN----N--VGRFVYFQTALCYGVKPI--QQP-- 149 (333)
T ss_dssp -CCSEEEECCCCCSCT------TCHHHH--HHHHTHHHHHHHHHHHHT----T--CSEEEEEEEGGGGCSCCC--SSS--
T ss_pred -CCcEEEECceecCCC------ccCChH--HHHHHHHHHHHHHHHHHh----C--CCEEEEECcHHHhCCCcc--cCC--
Confidence 699999999976331 234444 899999999999999763 1 269999999765410000 000
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHH-HHHhhcccCCcEEEEecCCcccCCcccccchh-h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE-FHRRFHEETGIAFASLYPGCIATTGLFREHIP-L 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~-la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~ 279 (358)
. +.++.. .+....|+.+|++.+.+++. ++ .+..++|+.+.++.......+ +
T Consensus 150 ----------------~-~~~E~~-~p~~~~Y~~sK~~~E~~~~~s~~---------~~~ilR~~~v~gp~~~~~~~~~~ 202 (333)
T 2q1w_A 150 ----------------V-RLDHPR-NPANSSYAISKSANEDYLEYSGL---------DFVTFRLANVVGPRNVSGPLPIF 202 (333)
T ss_dssp ----------------B-CTTSCC-CCTTCHHHHHHHHHHHHHHHHTC---------CEEEEEESEEESTTCCSSHHHHH
T ss_pred ----------------C-CcCCCC-CCCCCchHHHHHHHHHHHHhhhC---------CeEEEeeceEECcCCcCcHHHHH
Confidence 0 111111 22226899999998888776 43 567788888877751111111 1
Q ss_pred hhhhc---chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 FRLLF---PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ~~~~~---~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
..... ..+.......++.++|+|+++++++..+. |..+..+++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----g~~~~v~~~ 248 (333)
T 2q1w_A 203 FQRLSEGKKCFVTKARRDFVFVKDLARATVRAVDGVG----HGAYHFSSG 248 (333)
T ss_dssp HHHHHTTCCCEEEECEECEEEHHHHHHHHHHHHTTCC----CEEEECSCS
T ss_pred HHHHHcCCeeeCCCceEeeEEHHHHHHHHHHHHhcCC----CCEEEeCCC
Confidence 11100 00001122347899999999999998754 666666553
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=179.35 Aligned_cols=231 Identities=11% Similarity=0.095 Sum_probs=156.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++++++|||||+|+||+++++.|+++|.+.|++++|+..... +.+. ...++.++.+|+++.+++.++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~---~~l~-~~~~v~~~~~Dl~d~~~l~~~~~------ 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEK---INVP-DHPAVRFSETSITDDALLASLQD------ 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCG---GGSC-CCTTEEEECSCTTCHHHHHHCCS------
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCch---hhcc-CCCceEEEECCCCCHHHHHHHhh------
Confidence 5788999999999999999999999999338999999754321 1111 13578999999999987766544
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcC-CCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQS-DYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~-~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|+|||+||..... .+.+.++..+++|+.++..+++++.. . + .++||++||...+... ..
T Consensus 99 -~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~--~~~~V~~SS~~vyg~~-~~----- 160 (377)
T 2q1s_A 99 -EYDYVFHLATYHGNQ-----SSIHDPLADHENNTLTTLKLYERLKH----FKR--LKKVVYSAAGCSIAEK-TF----- 160 (377)
T ss_dssp -CCSEEEECCCCSCHH-----HHHHCHHHHHHHHTHHHHHHHHHHTT----CSS--CCEEEEEEEC--------------
T ss_pred -CCCEEEECCCccCch-----hhhhCHHHHHHHHHHHHHHHHHHHHH----hCC--CCeEEEeCCHHHcCCC-CC-----
Confidence 799999999975321 13456788999999999999988742 2 2 2599999997654211 00
Q ss_pred CCccccccccccCCCCCCCCCC--CCC---CC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc--
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMI--DGG---DF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL-- 272 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~-- 272 (358)
.+.+ +.. +. .+...|+.+|++.+.+++.++.+. |+++++++||.+.++..
T Consensus 161 ------------------~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~~~ 218 (377)
T 2q1s_A 161 ------------------DDAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH----QLPTVRARFQNVYGPGEIL 218 (377)
T ss_dssp ------------------------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCT
T ss_pred ------------------CCcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCCcc
Confidence 0011 111 22 345679999999999999998775 89999999999999855
Q ss_pred -------cc-----cchh-hhhhhcc--h---hH-HhhhcCccchhHHhhh-hhhhhcCCCCCCCceeeecCCC
Q 018331 273 -------FR-----EHIP-LFRLLFP--P---FQ-KYITKGYVSEDEAGKR-LAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 273 -------~~-----~~~~-~~~~~~~--~---~~-~~~~~~~~~~~~~a~~-i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.. ...+ +...... . .. ......++.++|+|++ ++.++..+. +| .+...++
T Consensus 219 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~---~g-~~~i~~~ 288 (377)
T 2q1s_A 219 GAGRWRGTPATVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP---GG-VYNIASG 288 (377)
T ss_dssp TCSSCCSSGGGTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT---TE-EEECCCC
T ss_pred cccccccCcccccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC---CC-eEEecCC
Confidence 21 1111 1111100 0 00 0011236779999999 999998753 67 5555543
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.1e-20 Score=179.94 Aligned_cols=233 Identities=16% Similarity=0.095 Sum_probs=154.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH---HHHHHHHHhcC---------CCCceEEEEecCCCHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL---KAERAAKSAGM---------AKENYTIMHLDLASLDS 109 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~---~~~~~~~~~~~---------~~~~i~~~~~Dl~~~~~ 109 (358)
...++++|||||+|+||++++++|++.| +.|++++|+.. ..+...+.+.. ...++.++.+|+++.++
T Consensus 66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 144 (427)
T 4f6c_A 66 HRPLGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDD 144 (427)
T ss_dssp CCCCEEEEEECTTSHHHHHHHHHHTTTE-EEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CC
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHHcCC-CEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCccc
Confidence 3567899999999999999999999999 59999999875 22333222211 13689999999999887
Q ss_pred HHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 110 VRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 110 i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+. .++++|+||||||.... .+.++..+++|+.++..+++++.+ . ..+||++||...
T Consensus 145 l~--------~~~~~d~Vih~A~~~~~--------~~~~~~~~~~Nv~g~~~l~~aa~~----~---~~~~v~~SS~~~- 200 (427)
T 4f6c_A 145 VV--------LPENMDTIIHAGARTDH--------FGDDDEFEKVNVQGTVDVIRLAQQ----H---HARLIYVSTISV- 200 (427)
T ss_dssp CC--------CSSCCSEEEECCCCC---------------CHHHHHHHHHHHHHHHHHH----T---TCEEEEEEEGGG-
T ss_pred CC--------CcCCCCEEEECCcccCC--------CCCHHHHHHHHHHHHHHHHHHHHh----c---CCcEEEECchHh-
Confidence 66 45689999999998632 245788899999999999999977 2 259999999876
Q ss_pred CCCcCCCCCCCCCccccccccccCCCCCCCCCCCCC---CCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 190 TNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGG---DFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
+......+.. .+..+.. +......|+.+|++.+.+++.++. .|+++++|+||.
T Consensus 201 -G~~~~~~~~~------------------~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~ivRpg~ 256 (427)
T 4f6c_A 201 -GTYFDIDTED------------------VTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGN 256 (427)
T ss_dssp -GSEECSSCSC------------------CEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-----TTCCEEEEEECC
T ss_pred -CCCccCCCCC------------------ccccccccccCCCCCCchHHHHHHHHHHHHHHHH-----cCCCEEEEeCCe
Confidence 2211110100 0111111 133667899999999999888653 489999999999
Q ss_pred ccCCcccccchh------hhhhhcchhH--------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 267 IATTGLFREHIP------LFRLLFPPFQ--------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 267 v~t~~~~~~~~~------~~~~~~~~~~--------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
|.++.....+.. +...+..... ......++.++|+|++++.++..+. .|..+..+++
T Consensus 257 v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~DvA~ai~~~~~~~~---~g~~~~l~~~ 327 (427)
T 4f6c_A 257 LTSPYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLSP 327 (427)
T ss_dssp EESCSSSCCCCTTGGGCHHHHHHHHHHHSSEEEHHHHTCEECCEEHHHHHHHHHHHTTSCC---CCSEEEESCS
T ss_pred eecCCCCCccccCcchHHHHHHHHHHHhcCCCCCccccceEEEeeHHHHHHHHHHHHcCCC---CCCEEEecCC
Confidence 999855432100 1111111000 0112337889999999999998765 5555555443
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-19 Score=169.45 Aligned_cols=228 Identities=12% Similarity=0.129 Sum_probs=156.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++|||||+|+||++++++|+++| +.|++++|+..... +.+ ..++.++.+|+++.+++.+++++ .++|
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~---~~~---~~~~~~~~~D~~~~~~~~~~~~~-----~~~d 69 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEG-LSVVVVDNLQTGHE---DAI---TEGAKFYNGDLRDKAFLRDVFTQ-----ENIE 69 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCG---GGS---CTTSEEEECCTTCHHHHHHHHHH-----SCEE
T ss_pred CEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCcCch---hhc---CCCcEEEECCCCCHHHHHHHHhh-----cCCC
Confidence 579999999999999999999999 69999998753221 112 13688999999999998888765 3799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+||..... .+.+.++..+++|+.++..+++++... + .+++|++||...+... .
T Consensus 70 ~vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~~~-~----------- 126 (330)
T 2c20_A 70 AVMHFAADSLVG-----VSMEKPLQYYNNNVYGALCLLEVMDEF----K--VDKFIFSSTAATYGEV-D----------- 126 (330)
T ss_dssp EEEECCCCCCHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGGCSC-S-----------
T ss_pred EEEECCcccCcc-----ccccCHHHHHHHHhHHHHHHHHHHHHc----C--CCEEEEeCCceeeCCC-C-----------
Confidence 999999975321 134567889999999999999987532 2 2599999997654210 0
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc----------c
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR----------E 275 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~----------~ 275 (358)
..+.++..+..+...|+.+|++.+.+++.++.++ |+++++++||.+.++.... .
T Consensus 127 ------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~g~~~~~~~~ 190 (330)
T 2c20_A 127 ------------VDLITEETMTNPTNTYGETKLAIEKMLHWYSQAS----NLRYKIFRYFNVAGATPNGIIGEDHRPETH 190 (330)
T ss_dssp ------------SSSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHTS----SCEEEEEECSEEECCCTTCSSCCCCSSCCS
T ss_pred ------------CCCCCcCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEecCcccCCCCcCccccccccccc
Confidence 0112233344456789999999999999988764 8999999999998874211 1
Q ss_pred chhhh-hhhcc---hhH----------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 276 HIPLF-RLLFP---PFQ----------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 276 ~~~~~-~~~~~---~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
..+.. ..... .+. ......++.++|+|++++.++..+.....|..+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~ 253 (330)
T 2c20_A 191 LIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLG 253 (330)
T ss_dssp HHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTTCCCEEEECC
T ss_pred hHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccCCCCCeEEeC
Confidence 11111 10000 000 001123578999999999998754332224445443
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-20 Score=175.76 Aligned_cols=242 Identities=14% Similarity=0.137 Sum_probs=159.6
Q ss_pred ccCcccCCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC-CHHHHHHHH
Q 018331 37 PQGKKTLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-SLDSVRQFV 114 (358)
Q Consensus 37 ~~~~~~l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~-~~~~i~~~~ 114 (358)
+.++..++++++|||||+|+||++++++|+++ | +.|++++|+........ ...++.++.+|++ +.+.+.+++
T Consensus 16 ~~~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~~-----~~~~v~~~~~Dl~~d~~~~~~~~ 89 (372)
T 3slg_A 16 TQGPGSMKAKKVLILGVNGFIGHHLSKRILETTD-WEVFGMDMQTDRLGDLV-----KHERMHFFEGDITINKEWVEYHV 89 (372)
T ss_dssp -------CCCEEEEESCSSHHHHHHHHHHHHHSS-CEEEEEESCCTTTGGGG-----GSTTEEEEECCTTTCHHHHHHHH
T ss_pred hcCCcccCCCEEEEECCCChHHHHHHHHHHhCCC-CEEEEEeCChhhhhhhc-----cCCCeEEEeCccCCCHHHHHHHh
Confidence 44555678899999999999999999999998 8 69999999865433221 1257899999999 999988887
Q ss_pred HHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcC
Q 018331 115 DTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLA 194 (358)
Q Consensus 115 ~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~ 194 (358)
+ ++|+|||+||..... ...+.....+++|+.++..+++++...- .++|++||...+. ...
T Consensus 90 ~-------~~d~Vih~A~~~~~~-----~~~~~~~~~~~~nv~~~~~ll~a~~~~~-------~~~v~~SS~~vyg-~~~ 149 (372)
T 3slg_A 90 K-------KCDVILPLVAIATPA-----TYVKQPLRVFELDFEANLPIVRSAVKYG-------KHLVFPSTSEVYG-MCA 149 (372)
T ss_dssp H-------HCSEEEECBCCCCHH-----HHHHCHHHHHHHHTTTTHHHHHHHHHHT-------CEEEEECCGGGGB-SCC
T ss_pred c-------cCCEEEEcCccccHH-----HHhhCHHHHHHHHHHHHHHHHHHHHHhC-------CcEEEeCcHHHhC-CCC
Confidence 6 589999999976321 1234567888999999999998886552 3999999965442 110
Q ss_pred CCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc
Q 018331 195 GNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR 274 (358)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~ 274 (358)
.. | +.+ ...+........+...|+.+|.+.+.+++.++.+ |+.+++++||.+.++....
T Consensus 150 ~~-~----~~e-----------~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~-----g~~~~ilRp~~v~G~~~~~ 208 (372)
T 3slg_A 150 DE-Q----FDP-----------DASALTYGPINKPRWIYACSKQLMDRVIWGYGME-----GLNFTLFRPFNWIGPGLDS 208 (372)
T ss_dssp CS-S----BCT-----------TTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECSEECSSCCC
T ss_pred CC-C----CCc-----------cccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC-----CCCEEEEccccccCCCccc
Confidence 00 0 000 0000000001135568999999988888877643 8999999999999986432
Q ss_pred cc------hhhhhhhcc-hhH---------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 275 EH------IPLFRLLFP-PFQ---------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 275 ~~------~~~~~~~~~-~~~---------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. ..+...+.. ... ......++.++|+|++++.++..+.....|..+...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~ni~~ 275 (372)
T 3slg_A 209 IYTPKEGSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGKIYNIGN 275 (372)
T ss_dssp TTCSBSCSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECC
T ss_pred ccccccccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCceEEeCC
Confidence 10 001111110 000 0111236789999999999998765334666676665
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=162.62 Aligned_cols=204 Identities=16% Similarity=0.160 Sum_probs=133.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+..|++|||||+|+||+++++.|+++|.+.|++++|+.++++. ....++.++++|+++.+++.++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~------- 87 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHK------PYPTNSQIIMGDVLNHAALKQAMQ------- 87 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCS------SCCTTEEEEECCTTCHHHHHHHHT-------
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcc------cccCCcEEEEecCCCHHHHHHHhc-------
Confidence 4567999999999999999999999994499999998755322 123578999999999999888876
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||+|.. .. ...++.+++.+++.+ .++||++||...+......
T Consensus 88 ~~D~vv~~a~~~---------~~--------------~~~~~~~~~~~~~~~--~~~iV~iSS~~~~~~~~~~------- 135 (236)
T 3qvo_A 88 GQDIVYANLTGE---------DL--------------DIQANSVIAAMKACD--VKRLIFVLSLGIYDEVPGK------- 135 (236)
T ss_dssp TCSEEEEECCST---------TH--------------HHHHHHHHHHHHHTT--CCEEEEECCCCC--------------
T ss_pred CCCEEEEcCCCC---------ch--------------hHHHHHHHHHHHHcC--CCEEEEEecceecCCCCcc-------
Confidence 689999999852 00 123567788887765 3799999998876311100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+. ...+.........|..+|.+ + ...||++++|+||++.++.... ...
T Consensus 136 ~~---------------~~~~~~~~~~~~~~~~~~~~-----------l-~~~gi~~~~vrPg~i~~~~~~~-~~~---- 183 (236)
T 3qvo_A 136 FV---------------EWNNAVIGEPLKPFRRAADA-----------I-EASGLEYTILRPAWLTDEDIID-YEL---- 183 (236)
T ss_dssp ------------------------CGGGHHHHHHHHH-----------H-HTSCSEEEEEEECEEECCSCCC-CEE----
T ss_pred cc---------------cchhhcccchHHHHHHHHHH-----------H-HHCCCCEEEEeCCcccCCCCcc-eEE----
Confidence 00 00000112233445444332 2 3469999999999998864321 100
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
... ......++++++|+|+++++++++++... |+.+..+++
T Consensus 184 ~~~--~~~~~~~~i~~~DvA~~i~~ll~~~~~~~-g~~~~i~~~ 224 (236)
T 3qvo_A 184 TSR--NEPFKGTIVSRKSVAALITDIIDKPEKHI-GENIGINQP 224 (236)
T ss_dssp ECT--TSCCSCSEEEHHHHHHHHHHHHHSTTTTT-TEEEEEECS
T ss_pred ecc--CCCCCCcEECHHHHHHHHHHHHcCccccc-CeeEEecCC
Confidence 000 00112356899999999999999987555 555555544
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-19 Score=166.10 Aligned_cols=217 Identities=14% Similarity=0.142 Sum_probs=151.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++|||||+|+||+++++.|+++| +.|++++|+....+ . .++.++.+|++ .+++.++++ ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~-~--------~~~~~~~~Dl~-~~~~~~~~~-------~~ 63 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDG-NTPIILTRSIGNKA-I--------NDYEYRVSDYT-LEDLINQLN-------DV 63 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCCC--------------CCEEEECCCC-HHHHHHHTT-------TC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCC-CEEEEEeCCCCccc-C--------CceEEEEcccc-HHHHHHhhc-------CC
Confidence 3689999999999999999999999 69999999843322 1 16889999999 888777655 79
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+||..... ..+..+++|+.++..+++++... + ..++|++||...+...
T Consensus 64 d~Vih~a~~~~~~---------~~~~~~~~n~~~~~~ll~a~~~~----~--~~r~v~~SS~~vyg~~------------ 116 (311)
T 3m2p_A 64 DAVVHLAATRGSQ---------GKISEFHDNEILTQNLYDACYEN----N--ISNIVYASTISAYSDE------------ 116 (311)
T ss_dssp SEEEECCCCCCSS---------SCGGGTHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCCCG------------
T ss_pred CEEEEccccCCCC---------ChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEEccHHHhCCC------------
Confidence 9999999986432 34667899999999999888543 2 2589999996654211
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-ch-hhhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE-HI-PLFRL 282 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~-~~-~~~~~ 282 (358)
...+.++..+..+...|+.+|.+.+.+++.++.+. |+.++.++||.+.++..... .. .+...
T Consensus 117 ------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~~~~~~~~~~~~ 180 (311)
T 3m2p_A 117 ------------TSLPWNEKELPLPDLMYGVSKLACEHIGNIYSRKK----GLCIKNLRFAHLYGFNEKNNYMINRFFRQ 180 (311)
T ss_dssp ------------GGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHHHS----CCEEEEEEECEEECSCC--CCHHHHHHHH
T ss_pred ------------CCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCEEEEeeCceeCcCCCCCCHHHHHHHH
Confidence 00112233344556789999999999999888763 89999999999999855421 11 11111
Q ss_pred hcc--hh----HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 283 LFP--PF----QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 283 ~~~--~~----~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
... .. .......++.++|+|++++.++..+. .|..+...+
T Consensus 181 ~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~---~~~~~~i~~ 226 (311)
T 3m2p_A 181 AFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK---VSGTFNIGS 226 (311)
T ss_dssp HHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT---CCEEEEECC
T ss_pred HHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC---CCCeEEeCC
Confidence 100 00 00111236789999999999998764 455555444
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-21 Score=178.87 Aligned_cols=241 Identities=14% Similarity=0.075 Sum_probs=148.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH--HHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER--AAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~--~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|++|||||+|+||++++++|+++| +.|+++.|+...... ....+. ...++.++++|+++.+++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G-~~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~------- 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKG-YAVNTTVRDPDNQKKVSHLLELQ-ELGDLKIFRADLTDELSFEAPIA------- 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTT-CEEEEEESCTTCTTTTHHHHHHG-GGSCEEEEECCTTTSSSSHHHHT-------
T ss_pred CCEEEEECCchHHHHHHHHHHHHCC-CEEEEEEcCcchhhhHHHHHhcC-CCCcEEEEecCCCChHHHHHHHc-------
Confidence 6799999999999999999999999 599988887543211 111222 22468899999999988777765
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+|||+|+.... . ..+..++.+++|+.|+..+++++.+... .++||++||..+..+....+....
T Consensus 80 ~~D~Vih~A~~~~~----~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~-----v~r~V~~SS~~~~~~~~~~~~~~~-- 146 (338)
T 2rh8_A 80 GCDFVFHVATPVHF----A--SEDPENDMIKPAIQGVVNVMKACTRAKS-----VKRVILTSSAAAVTINQLDGTGLV-- 146 (338)
T ss_dssp TCSEEEEESSCCCC---------------CHHHHHHHHHHHHHHHHCTT-----CCEEEEECCHHHHHHHHHTCSCCC--
T ss_pred CCCEEEEeCCccCC----C--CCCcHHHHHHHHHHHHHHHHHHHHHcCC-----cCEEEEEecHHHeecCCcCCCCcc--
Confidence 58999999986421 1 1122245899999999999999876431 259999999874321110000000
Q ss_pred ccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+......+...+. +....|+.||++.+.+++.++++. |+++++|+||.+.+++..........
T Consensus 147 ----------~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~~~~~~~~~~~ 212 (338)
T 2rh8_A 147 ----------VDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGSSLTSDVPSSIG 212 (338)
T ss_dssp ----------CCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH----TCCEEEEEECEEESCCSSSSCCHHHH
T ss_pred ----------cChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCCCCCCchHH
Confidence 000000000000010 011269999999888887776553 89999999999999865332211111
Q ss_pred hh------cch-hH---Hh--h--hcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 282 LL------FPP-FQ---KY--I--TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 282 ~~------~~~-~~---~~--~--~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
.. ... +. .. . ...++.++|+|++++++++.+. .+|.|+..
T Consensus 213 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~--~~~~~~~~ 266 (338)
T 2rh8_A 213 LAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKES--ASGRYICC 266 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTT--CCEEEEEC
T ss_pred HHHHHHcCCccccccccccccccCcccEEEHHHHHHHHHHHHcCCC--cCCcEEEe
Confidence 00 000 00 00 0 0147899999999999997643 36776543
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=167.67 Aligned_cols=217 Identities=15% Similarity=0.106 Sum_probs=121.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||+|+||++++++|+++| +.|++++|+... .+ ++.+|+++.+++.++++.. ++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~------------~~--~~~~Dl~d~~~~~~~~~~~-----~~ 61 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNN-WHAVGCGFRRAR------------PK--FEQVNLLDSNAVHHIIHDF-----QP 61 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTT-CEEEEEC--------------------------------CHHHHHHH-----CC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCC-CeEEEEccCCCC------------CC--eEEecCCCHHHHHHHHHhh-----CC
Confidence 5789999999999999999999999 699999987532 12 7789999999988888754 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||..... .+.+.++..+++|+.++..+++++.+. +++||++||...+...
T Consensus 62 d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~~-------~~~~v~~SS~~v~~~~------------ 117 (315)
T 2ydy_A 62 HVIVHCAAERRPD-----VVENQPDAASQLNVDASGNLAKEAAAV-------GAFLIYISSDYVFDGT------------ 117 (315)
T ss_dssp SEEEECC------------------------CHHHHHHHHHHHHH-------TCEEEEEEEGGGSCSS------------
T ss_pred CEEEECCcccChh-----hhhcCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEchHHHcCCC------------
Confidence 9999999976331 245678889999999999999999763 1499999998765310
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc--cchh-hhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR--EHIP-LFR 281 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~--~~~~-~~~ 281 (358)
..+.++..+..+...|+.+|++.+.+++.++.+ +..|+|+.+.++.... .... +..
T Consensus 118 -------------~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~--------~~~lR~~~v~G~~~~~~~~~~~~~~~ 176 (315)
T 2ydy_A 118 -------------NPPYREEDIPAPLNLYGKTKLDGEKAVLENNLG--------AAVLRIPILYGEVEKLEESAVTVMFD 176 (315)
T ss_dssp -------------SCSBCTTSCCCCCSHHHHHHHHHHHHHHHHCTT--------CEEEEECSEECSCSSGGGSTTGGGHH
T ss_pred -------------CCCCCCCCCCCCcCHHHHHHHHHHHHHHHhCCC--------eEEEeeeeeeCCCCcccccHHHHHHH
Confidence 011222233445678999999999998877433 3456666665543221 1111 111
Q ss_pred hhc----ch-hHHhhhcCccchhHHhhhhhhhhcCCC-CCCCceeeecCCC
Q 018331 282 LLF----PP-FQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKD 326 (358)
Q Consensus 282 ~~~----~~-~~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d~~ 326 (358)
... .. ........++.++|+|+++++++..+. ....|..+...++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~~i~~~ 227 (315)
T 2ydy_A 177 KVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGN 227 (315)
T ss_dssp HHHCCSSCEEEECSSBBCCEEHHHHHHHHHHHHHHHHTCTTCCEEEECCCS
T ss_pred HHHhcCCCeeeccCceECcEEHHHHHHHHHHHHHhhccccCCCCeEEEcCC
Confidence 100 00 001122346899999999999987541 1134555555543
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-19 Score=171.65 Aligned_cols=229 Identities=10% Similarity=-0.023 Sum_probs=152.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++++++|||||+|+||+++++.|+++|.+.|++++|+..... ...+. ++. +.+|+++.+.+..+++. ..+
T Consensus 43 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~-~~~d~~~~~~~~~~~~~--~~~ 113 (357)
T 2x6t_A 43 GIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN-IADYMDKEDFLIQIMAG--EEF 113 (357)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGTT----TSC-CSEEEEHHHHHHHHHTT--CCC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhccc----Cce-EeeecCcHHHHHHHHhh--ccc
Confidence 4678999999999999999999999999338888888754321 11111 223 67899998888777653 135
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+|||+||.... +.+.++..+++|+.++..+++++.+. + . +||++||...+... ..
T Consensus 114 ~~~d~Vih~A~~~~~-------~~~~~~~~~~~n~~~~~~ll~a~~~~----~--~-r~V~~SS~~v~g~~-~~------ 172 (357)
T 2x6t_A 114 GDVEAIFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATYGGR-TS------ 172 (357)
T ss_dssp SSCCEEEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGGCSC-SS------
T ss_pred CCCCEEEECCcccCC-------ccCCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEcchHHhCCC-CC------
Confidence 679999999997632 23456788999999999999999763 1 2 99999998754211 00
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc-----cc
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-----EH 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-----~~ 276 (358)
.+.++..+..+...|+.+|++.+.+++.++.+. |+++++|+||.+.++.... ..
T Consensus 173 -----------------~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~Gp~~~~~~~~~~~ 231 (357)
T 2x6t_A 173 -----------------DFIESREYEKPLNVFGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASV 231 (357)
T ss_dssp -----------------CCCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCTTCGGGSCH
T ss_pred -----------------CCcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEecCeEECCCCCCCcccchH
Confidence 011111223345689999999999999888764 8999999999999885431 11
Q ss_pred hh-hhhhhc-----chh-HHhh-hcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 277 IP-LFRLLF-----PPF-QKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 277 ~~-~~~~~~-----~~~-~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. +..... ..+ .... ...++.++|+|+++++++..+. |..+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~----~~~~~i~~ 284 (357)
T 2x6t_A 232 AFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV----SGIFNLGT 284 (357)
T ss_dssp HHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC----CEEEEESC
T ss_pred HHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC----CCeEEecC
Confidence 11 111100 001 0111 2356899999999999998654 45555544
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.6e-19 Score=175.12 Aligned_cols=235 Identities=15% Similarity=0.117 Sum_probs=155.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhC---CCcEEEEEecChHHHHHHH---HHhcC------------CCCceEEEEe
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAET---GKWHIIMACRDFLKAERAA---KSAGM------------AKENYTIMHL 102 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~---Ga~~Vi~~~r~~~~~~~~~---~~~~~------------~~~~i~~~~~ 102 (358)
...++|+||||||+|+||++++++|+++ | ++|++++|+........ +.+.. ...++.++.+
T Consensus 69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g-~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVD-GRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTT-CEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCC-CEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence 3567999999999999999999999999 8 59999999865432222 11111 1358999999
Q ss_pred cCC------CHHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCC
Q 018331 103 DLA------SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYP 176 (358)
Q Consensus 103 Dl~------~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~ 176 (358)
|++ +.+.+.++++ ++|+||||||.... +.++..+++|+.++..+++++.. .+
T Consensus 148 Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~---------~~~~~~~~~Nv~gt~~ll~aa~~----~~-- 205 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA---------FPYHELFGPNVAGTAELIRIALT----TK-- 205 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB---------SSCCEEHHHHHHHHHHHHHHHTS----SS--
T ss_pred ECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC---------cCHHHHHHHHHHHHHHHHHHHHh----CC--
Confidence 998 6666666665 58999999998632 23467789999999999988753 22
Q ss_pred CCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCC-----------chhhhhHHhHHHHHHHHH
Q 018331 177 SKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-----------DGAKAYKDSKVCNMLTMQ 245 (358)
Q Consensus 177 ~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~Y~~sK~al~~~~~ 245 (358)
..++|++||...+. .... . ...+..+. .....|+.||.+.+.+++
T Consensus 206 ~~~~V~iSS~~v~~-~~~~-----~------------------~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 261 (478)
T 4dqv_A 206 LKPFTYVSTADVGA-AIEP-----S------------------AFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLR 261 (478)
T ss_dssp CCCEEEEEEGGGGT-TSCT-----T------------------TCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHH
T ss_pred CCeEEEEeehhhcC-ccCC-----C------------------CcCCcccccccCcccccccccccchHHHHHHHHHHHH
Confidence 25999999976432 1000 0 00111111 122459999999999999
Q ss_pred HHHHhhcccCCcEEEEecCCcccCCcccc---cchhhhhhhcchhHH---hh---------------hcCccchhHHhhh
Q 018331 246 EFHRRFHEETGIAFASLYPGCIATTGLFR---EHIPLFRLLFPPFQK---YI---------------TKGYVSEDEAGKR 304 (358)
Q Consensus 246 ~la~e~~~~~gI~v~~v~PG~v~t~~~~~---~~~~~~~~~~~~~~~---~~---------------~~~~~~~~~~a~~ 304 (358)
.++.+. |+++++|+||.|.++.... +...+...+...... .+ ...++.++++|++
T Consensus 262 ~~~~~~----gi~~~ivRpg~v~G~~~~~g~~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~a 337 (478)
T 4dqv_A 262 EANDLC----ALPVAVFRCGMILADTSYAGQLNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEA 337 (478)
T ss_dssp HHHHHH----CCCEEEEEECEEECCSSSSSCCCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHH
T ss_pred HHHHHh----CCCeEEEECceeeCCCccCCcCCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHH
Confidence 988765 8999999999998864311 111111111111100 00 1135789999999
Q ss_pred hhhhhcCCC--CCCCceeeecCCC
Q 018331 305 LAQVVSDPS--LTKSGVYWSWNKD 326 (358)
Q Consensus 305 i~~l~~~~~--~~~~G~~~~~d~~ 326 (358)
++.++.... ....|..|...++
T Consensus 338 i~~~~~~~~~~~~~~~~~ynv~~~ 361 (478)
T 4dqv_A 338 IAVLGARVAGSSLAGFATYHVMNP 361 (478)
T ss_dssp HHHHHHTTC-CCCCSEEEEEESCC
T ss_pred HHHHHhhcccCCCCCCceEEecCC
Confidence 999987521 1234555555443
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=169.31 Aligned_cols=234 Identities=12% Similarity=0.051 Sum_probs=155.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH-HHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL-DSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~-~~i~~~~~~~~~~~~~ 123 (358)
+++|||||+|+||++++++|+++ | +.|++++|+....+.. . ...++.++.+|+++. +.+.++++ +
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g-~~V~~~~r~~~~~~~~----~-~~~~~~~~~~D~~~~~~~~~~~~~-------~ 67 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRF----L-NHPHFHFVEGDISIHSEWIEYHVK-------K 67 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTT-CEEEEEESCCGGGGGG----T-TCTTEEEEECCTTTCSHHHHHHHH-------H
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCC-CEEEEEeCCcchHHHh----h-cCCCeEEEeccccCcHHHHHhhcc-------C
Confidence 47999999999999999999998 8 5999999986543221 1 135789999999984 55666655 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+||..... ...++++..+++|+.++..+++++... + +++|++||...+.... . ..+
T Consensus 68 ~d~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~v~~SS~~v~g~~~-~-----~~~ 129 (345)
T 2bll_A 68 CDVVLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY----R---KRIIFPSTSEVYGMCS-D-----KYF 129 (345)
T ss_dssp CSEEEECBCCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT----T---CEEEEECCGGGGBTCC-C-----SSB
T ss_pred CCEEEEcccccCcc-----chhcCHHHHHHHHHHHHHHHHHHHHHh----C---CeEEEEecHHHcCCCC-C-----CCc
Confidence 89999999975321 123456788999999999998888542 1 4999999976542110 0 000
Q ss_pred cccccccccCCCCCCCCCCCCCC-CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc-------
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGD-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE------- 275 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~------- 275 (358)
.+ . .......+ ......|+.+|++.+.+++.++++. |+++++++||.+.++.....
T Consensus 130 ~e----------~--~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~~~~~ 193 (345)
T 2bll_A 130 DE----------D--HSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLDNLNAARIGS 193 (345)
T ss_dssp CT----------T--TCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSCCCTTCSBSCB
T ss_pred CC----------c--ccccccCcccCcccccHHHHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCCccccccccccc
Confidence 00 0 00000011 1345689999999999999998775 89999999999999864310
Q ss_pred chhhhhhhcchhHH---------hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 276 HIPLFRLLFPPFQK---------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 276 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...+.......... .....++.++|+|++++.++..+.....|+.+...++
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g~~~~i~~~ 253 (345)
T 2bll_A 194 SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 253 (345)
T ss_dssp CHHHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCT
T ss_pred ccHHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccccCCCceEEeCCC
Confidence 00000110000000 0112368999999999999987643346776666654
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.2e-19 Score=166.65 Aligned_cols=226 Identities=17% Similarity=0.112 Sum_probs=150.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.++++++|||||+|+||++++++|+++|. +.|++++|+...... ....++.++.+|+++.+++.++++
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~ 84 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA------GFSGAVDARAADLSAPGEAEKLVE 84 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT------TCCSEEEEEECCTTSTTHHHHHHH
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc------ccCCceeEEEcCCCCHHHHHHHHh
Confidence 47889999999999999999999999992 389999987532211 124578899999999998888775
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
+++|+||||||.... .+.++++..+++|+.++..+++++.+...+++ ..++||++||...+....
T Consensus 85 ------~~~d~vih~A~~~~~------~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~-~~~~iv~~SS~~~~~~~~-- 149 (342)
T 2hrz_A 85 ------ARPDVIFHLAAIVSG------EAELDFDKGYRINLDGTRYLFDAIRIANGKDG-YKPRVVFTSSIAVFGAPL-- 149 (342)
T ss_dssp ------TCCSEEEECCCCCHH------HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHC-CCCEEEEEEEGGGCCSSC--
T ss_pred ------cCCCEEEECCccCcc------cccccHHHHHHHHHHHHHHHHHHHHhcccccC-CCcEEEEeCchHhhCCCC--
Confidence 379999999997531 23567889999999999999999987653211 025999999987552110
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEec--CCcccCCcc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLY--PGCIATTGL 272 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~--PG~v~t~~~ 272 (358)
+ .+.++..+..+...|+.||++.+.+++.++.+.. ....++++.|. ||.+.++.
T Consensus 150 --~--------------------~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~- 206 (342)
T 2hrz_A 150 --P--------------------YPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAA- 206 (342)
T ss_dssp --C--------------------SSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSG-
T ss_pred --C--------------------CCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchh-
Confidence 0 0122233444567899999999999998887631 11234555554 66554431
Q ss_pred cccch-hhhhhhcch------hHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 273 FREHI-PLFRLLFPP------FQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 273 ~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.... .+....... ........++.++|+|++++.++..+
T Consensus 207 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~ 252 (342)
T 2hrz_A 207 -SGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMID 252 (342)
T ss_dssp -GGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSC
T ss_pred -HHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhcc
Confidence 1111 011100000 00000011568999999999998764
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=165.43 Aligned_cols=192 Identities=12% Similarity=0.067 Sum_probs=139.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.++++|||||+|+||++++++|+++|. ..|++++|+... ...++.++.+|+++.+++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~----------~~~~~~~~~~D~~~~~~~~~~~-------- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPRLDNPVGPLAELLPQLDGS-------- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTTEECCBSCHHHHGGGCCSC--------
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc----------cCCCceEEeccccCHHHHHHhh--------
Confidence 467899999999999999999999994 299999998643 1246788899998876654432
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
+|+||||+|.... +.+.++..+++|+.++..+++++.+. + .+++|++||...+.
T Consensus 66 -~d~vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~Ss~~~~~------------ 119 (215)
T 2a35_A 66 -IDTAFCCLGTTIK-------EAGSEEAFRAVDFDLPLAVGKRALEM----G--ARHYLVVSALGADA------------ 119 (215)
T ss_dssp -CSEEEECCCCCHH-------HHSSHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEECCTTCCT------------
T ss_pred -hcEEEECeeeccc-------cCCCHHHHHHhhHHHHHHHHHHHHHc----C--CCEEEEECCcccCC------------
Confidence 8999999996521 23567888999999999999987643 2 25899999987652
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcE-EEEecCCcccCCcccccchhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIA-FASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~-v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
++...|+.+|++++.+++. .|++ ++.|+||.+.++...........
T Consensus 120 -------------------------~~~~~y~~sK~~~e~~~~~--------~~~~~~~~vrp~~v~g~~~~~~~~~~~~ 166 (215)
T 2a35_A 120 -------------------------KSSIFYNRVKGELEQALQE--------QGWPQLTIARPSLLFGPREEFRLAEILA 166 (215)
T ss_dssp -------------------------TCSSHHHHHHHHHHHHHTT--------SCCSEEEEEECCSEESTTSCEEGGGGTT
T ss_pred -------------------------CCccHHHHHHHHHHHHHHH--------cCCCeEEEEeCceeeCCCCcchHHHHHH
Confidence 1234799999998777653 2888 99999999999754322111111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
....++.. ....++.++|+|++++.++..+.
T Consensus 167 ~~~~~~~~-~~~~~i~~~Dva~~~~~~~~~~~ 197 (215)
T 2a35_A 167 APIARILP-GKYHGIEACDLARALWRLALEEG 197 (215)
T ss_dssp CCCC-----CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhhhhccC-CCcCcEeHHHHHHHHHHHHhcCC
Confidence 00111110 02246789999999999998763
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=156.62 Aligned_cols=213 Identities=13% Similarity=0.134 Sum_probs=132.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++| +.|++++|+.++++... .++.++.+|+++.++ +. ++++|+
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~-------~~~~~~~~D~~d~~~--~~-------~~~~d~ 64 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRG-HEVTAIVRNAGKITQTH-------KDINILQKDIFDLTL--SD-------LSDQNV 64 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCSHHHHHHC-------SSSEEEECCGGGCCH--HH-------HTTCSE
T ss_pred eEEEEcCCchhHHHHHHHHHhCC-CEEEEEEcCchhhhhcc-------CCCeEEeccccChhh--hh-------hcCCCE
Confidence 59999999999999999999999 69999999976654431 478999999999887 22 247999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||.... ...+|+.+ ++.+++.+++.+ .+++|++||..++.+.....
T Consensus 65 vi~~ag~~~~--------------~~~~~~~~----~~~l~~a~~~~~--~~~~v~~SS~~~~~~~~~~~---------- 114 (221)
T 3ew7_A 65 VVDAYGISPD--------------EAEKHVTS----LDHLISVLNGTV--SPRLLVVGGAASLQIDEDGN---------- 114 (221)
T ss_dssp EEECCCSSTT--------------TTTSHHHH----HHHHHHHHCSCC--SSEEEEECCCC-------------------
T ss_pred EEECCcCCcc--------------ccchHHHH----HHHHHHHHHhcC--CceEEEEecceEEEcCCCCc----------
Confidence 9999998421 13345554 455555556653 37999999988764221100
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
...+..+......|+.+|.+.+.+ ..+.. ...|++++.|+||.+.++...... +.......
T Consensus 115 -------------~~~~~~~~~~~~~y~~~k~~~e~~-~~~~~---~~~gi~~~ivrp~~v~g~~~~~~~--~~~~~~~~ 175 (221)
T 3ew7_A 115 -------------TLLESKGLREAPYYPTARAQAKQL-EHLKS---HQAEFSWTYISPSAMFEPGERTGD--YQIGKDHL 175 (221)
T ss_dssp -----------------------CCCSCCHHHHHHHH-HHHHT---TTTTSCEEEEECSSCCCCC---------------
T ss_pred -------------cccccCCCCCHHHHHHHHHHHHHH-HHHHh---hccCccEEEEeCcceecCCCccCc--eEeccccc
Confidence 000111222345699999997776 22222 146999999999999987321111 10000000
Q ss_pred hHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 287 FQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 287 ~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
........+++++|+|++++.++..+. ..|+.|...+..
T Consensus 176 ~~~~~~~~~i~~~Dva~~~~~~l~~~~--~~g~~~~~~~~~ 214 (221)
T 3ew7_A 176 LFGSDGNSFISMEDYAIAVLDEIERPN--HLNEHFTVAGKL 214 (221)
T ss_dssp --------CCCHHHHHHHHHHHHHSCS--CTTSEEECCC--
T ss_pred eecCCCCceEeHHHHHHHHHHHHhCcc--ccCCEEEECCCC
Confidence 001111247899999999999998875 367888777753
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-19 Score=165.53 Aligned_cols=223 Identities=12% Similarity=0.078 Sum_probs=144.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..++++++|||||+|+||++++++|+++| +.|++++|+........+.+. ...++.++.+|+.+..
T Consensus 23 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~------------ 88 (343)
T 2b69_A 23 MEKDRKRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVEHWI-GHENFELINHDVVEPL------------ 88 (343)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTGGGT-TCTTEEEEECCTTSCC------------
T ss_pred cccCCCEEEEEcCccHHHHHHHHHHHHCC-CEEEEEeCCCccchhhhhhhc-cCCceEEEeCccCChh------------
Confidence 45788999999999999999999999999 599999986432111111111 1346889999998742
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+.++|+|||+||...... ..+.++..+++|+.++..+++++... + .++|++||...+. ..... |
T Consensus 89 ~~~~d~vih~A~~~~~~~-----~~~~~~~~~~~n~~~~~~l~~a~~~~----~---~~~v~~SS~~v~g-~~~~~-~-- 152 (343)
T 2b69_A 89 YIEVDQIYHLASPASPPN-----YMYNPIKTLKTNTIGTLNMLGLAKRV----G---ARLLLASTSEVYG-DPEVH-P-- 152 (343)
T ss_dssp CCCCSEEEECCSCCSHHH-----HTTCHHHHHHHHHHHHHHHHHHHHHH----T---CEEEEEEEGGGGB-SCSSS-S--
T ss_pred hcCCCEEEECccccCchh-----hhhCHHHHHHHHHHHHHHHHHHHHHh----C---CcEEEECcHHHhC-CCCCC-C--
Confidence 457999999999753210 11345678899999999999988653 1 4999999976542 10000 0
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+ .+.. ..+..+..+...|+.+|++.+.+++.++++. |+.+++++||.+.++..........
T Consensus 153 --~----------~E~~---~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~~~ 213 (343)
T 2b69_A 153 --Q----------SEDY---WGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRMHMNDGRVV 213 (343)
T ss_dssp --B----------CTTC---CCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCTTCCCHH
T ss_pred --C----------cccc---cccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEEcceeCcCCCCCcccHH
Confidence 0 0000 0001234456789999999999999988775 8999999999999985432111110
Q ss_pred hhh-cchhHH---------hhhcCccchhHHhhhhhhhhcCC
Q 018331 281 RLL-FPPFQK---------YITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~-~~~~~~---------~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
..+ ...... .....++.++|+|++++.++..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 255 (343)
T 2b69_A 214 SNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 255 (343)
T ss_dssp HHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcC
Confidence 010 000000 01123678999999999998754
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-19 Score=157.18 Aligned_cols=212 Identities=11% Similarity=0.002 Sum_probs=139.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++| +.|++++|+..++... ...++.++.+|+++.++ +. ++++|+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~------~~~~~~~~~~D~~d~~~--~~-------~~~~d~ 65 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRG-HEVLAVVRDPQKAADR------LGATVATLVKEPLVLTE--AD-------LDSVDA 65 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESCHHHHHHH------TCTTSEEEECCGGGCCH--HH-------HTTCSE
T ss_pred EEEEEcCCCHHHHHHHHHHHHCC-CEEEEEEecccccccc------cCCCceEEecccccccH--hh-------cccCCE
Confidence 59999999999999999999999 5999999997665533 12578999999999887 22 247999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||...... ...+|+.++ +.+++.+++.+ +++|++||..+....... ...+.
T Consensus 66 vi~~ag~~~~~~------------~~~~n~~~~----~~l~~a~~~~~---~~~v~~SS~~~~~~~~~~----~~~~~-- 120 (224)
T 3h2s_A 66 VVDALSVPWGSG------------RGYLHLDFA----THLVSLLRNSD---TLAVFILGSASLAMPGAD----HPMIL-- 120 (224)
T ss_dssp EEECCCCCTTSS------------CTHHHHHHH----HHHHHTCTTCC---CEEEEECCGGGSBCTTCS----SCGGG--
T ss_pred EEECCccCCCcc------------hhhHHHHHH----HHHHHHHHHcC---CcEEEEecceeeccCCCC----ccccc--
Confidence 999999862210 134566665 44455555543 699999998765422110 00000
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcch
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPP 286 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~ 286 (358)
++.........|+.+|++.+.+ +.+. ...|++++.|+||.+.+++....+. .....
T Consensus 121 ---------------~~~~~~~~~~~y~~sK~~~e~~-~~~~----~~~~i~~~ivrp~~v~g~~~~~~~~----~~~~~ 176 (224)
T 3h2s_A 121 ---------------DFPESAASQPWYDGALYQYYEY-QFLQ----MNANVNWIGISPSEAFPSGPATSYV----AGKDT 176 (224)
T ss_dssp ---------------GCCGGGGGSTTHHHHHHHHHHH-HHHT----TCTTSCEEEEEECSBCCCCCCCCEE----EESSB
T ss_pred ---------------cCCCCCccchhhHHHHHHHHHH-HHHH----hcCCCcEEEEcCccccCCCcccCce----ecccc
Confidence 0001112256799999997744 2222 3569999999999999874322211 11000
Q ss_pred h-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 287 F-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 287 ~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
+ .......++.++|+|++++.++..+.. .|+.+...+
T Consensus 177 ~~~~~~~~~~i~~~DvA~~~~~~l~~~~~--~g~~~~~~~ 214 (224)
T 3h2s_A 177 LLVGEDGQSHITTGNMALAILDQLEHPTA--IRDRIVVRD 214 (224)
T ss_dssp CCCCTTSCCBCCHHHHHHHHHHHHHSCCC--TTSEEEEEE
T ss_pred cccCCCCCceEeHHHHHHHHHHHhcCccc--cCCEEEEec
Confidence 0 011123478999999999999988753 566665544
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-19 Score=166.64 Aligned_cols=217 Identities=12% Similarity=0.104 Sum_probs=151.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 45 KGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++++|||||+|+||++++++|+++ | +.|++++|+....+ .. .++.++.+|+++.+++.+++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~-~~-------~~~~~~~~D~~d~~~~~~~~~~~----- 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGT-ENVIASDIRKLNTD-VV-------NSGPFEVVNALDFNQIEHLVEVH----- 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCG-GGEEEEESCCCSCH-HH-------HSSCEEECCTTCHHHHHHHHHHT-----
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCC-CEEEEEcCCCcccc-cc-------CCCceEEecCCCHHHHHHHHhhc-----
Confidence 467999999999999999999999 8 68989888754421 11 24678999999999988887643
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+|||+||..... ..+.++..+++|+.++..+++++.+. + .+++|++||...+.....
T Consensus 68 ~~d~vih~a~~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~~~~~~~~-------- 127 (312)
T 2yy7_A 68 KITDIYLMAALLSAT------AEKNPAFAWDLNMNSLFHVLNLAKAK----K--IKKIFWPSSIAVFGPTTP-------- 127 (312)
T ss_dssp TCCEEEECCCCCHHH------HHHCHHHHHHHHHHHHHHHHHHHHTT----S--CSEEECCEEGGGCCTTSC--------
T ss_pred CCCEEEECCccCCCc------hhhChHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEeccHHHhCCCCC--------
Confidence 699999999975221 23567888999999999999988642 2 259999999876531100
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc---hhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IPL 279 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~---~~~ 279 (358)
....++..+..+...|+.+|++.+.+++.++.+. |+++++++||.+.++...... ...
T Consensus 128 ---------------~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~g~~~~~~~~~~~~~ 188 (312)
T 2yy7_A 128 ---------------KENTPQYTIMEPSTVYGISKQAGERWCEYYHNIY----GVDVRSIRYPGLISWSTPPGGGTTDYA 188 (312)
T ss_dssp ---------------SSSBCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEECEEECEEECSSSCCCSCTTTHH
T ss_pred ---------------CCCccccCcCCCCchhHHHHHHHHHHHHHHHHhc----CCcEEEEeCCeEecCCCCCCCchhhhH
Confidence 0011122233446689999999999999988775 899999999999986432111 001
Q ss_pred hhhhcchhH---------HhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 280 FRLLFPPFQ---------KYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 280 ~~~~~~~~~---------~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
...+..... ......++.++|+|++++.++..+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~ 232 (312)
T 2yy7_A 189 VDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVE 232 (312)
T ss_dssp HHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCccc
Confidence 111111000 00112357889999999999987643
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=163.83 Aligned_cols=177 Identities=14% Similarity=0.097 Sum_probs=126.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++|||||+|+||++++++|+++| +.|++++|.. ...+...+ + .+.++.++.+|+++.+++.++++..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G-~~V~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~Dl~~~~~~~~~~~~~----- 72 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIER-L--GGKHPTFVEGDIRNEALMTEILHDH----- 72 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHH-H--HTSCCEEEECCTTCHHHHHHHHHHT-----
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEecCCCcchhHHHHHHh-h--cCCcceEEEccCCCHHHHHHHhhcc-----
Confidence 69999999999999999999999 5888887642 12222111 1 1346788999999999988887642
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||..... ...+..+..+++|+.++..+++++... + .++||++||...+... .
T Consensus 73 ~~D~vih~A~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~iv~~SS~~~~g~~-~-------- 132 (338)
T 1udb_A 73 AIDTVIHFAGLKAVG-----ESVQKPLEYYDNNVNGTLRLISAMRAA----N--VKNFIFSSSATVYGDN-P-------- 132 (338)
T ss_dssp TCSEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGCSC-C--------
T ss_pred CCCEEEECCccCccc-----cchhcHHHHHHHHHHHHHHHHHHHHhc----C--CCeEEEEccHHHhCCC-C--------
Confidence 699999999975321 123456778999999999998876432 2 2599999997654210 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
..+.++..+. +....|+.||++.+.+++.++.+. +++++..++|+.+.++
T Consensus 133 ---------------~~~~~e~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~ 183 (338)
T 1udb_A 133 ---------------KIPYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_dssp ---------------SSSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECC
T ss_pred ---------------CCCcCcccCCCCCCChHHHHHHHHHHHHHHHHHhc---CCCceEEEeeceecCC
Confidence 0011122222 235689999999999999998774 4899999998777654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-18 Score=158.32 Aligned_cols=205 Identities=13% Similarity=0.125 Sum_probs=144.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
-+++|||||+|+||+++++.|+++| +.|++++|+ .+|+++.+++.++++.. ++
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~Dl~d~~~~~~~~~~~-----~~ 64 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKN-VEVIPTDVQ---------------------DLDITNVLAVNKFFNEK-----KP 64 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSS-EEEEEECTT---------------------TCCTTCHHHHHHHHHHH-----CC
T ss_pred cceEEEECCCChHHHHHHHHHHhCC-CeEEeccCc---------------------cCCCCCHHHHHHHHHhc-----CC
Confidence 4589999999999999999999999 699999996 38999999998888754 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... +.+.+.++..+++|+.++..+++++.+. + .+||++||...+....
T Consensus 65 d~vih~A~~~~~-----~~~~~~~~~~~~~nv~~~~~l~~a~~~~----~---~~iv~~SS~~v~~~~~----------- 121 (292)
T 1vl0_A 65 NVVINCAAHTAV-----DKCEEQYDLAYKINAIGPKNLAAAAYSV----G---AEIVQISTDYVFDGEA----------- 121 (292)
T ss_dssp SEEEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHH----T---CEEEEEEEGGGSCSCC-----------
T ss_pred CEEEECCccCCH-----HHHhcCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEechHHeECCCC-----------
Confidence 999999997522 1234678899999999999999998763 1 4999999987553110
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLL 283 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~ 283 (358)
..+.++..+..+...|+.+|++.+.+++.++. .+..++|+.+.++ ...... +....
T Consensus 122 -------------~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~--------~~~~lR~~~v~G~--~~~~~~~~~~~~ 178 (292)
T 1vl0_A 122 -------------KEPITEFDEVNPQSAYGKTKLEGENFVKALNP--------KYYIVRTAWLYGD--GNNFVKTMINLG 178 (292)
T ss_dssp -------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEESS--SSCHHHHHHHHH
T ss_pred -------------CCCCCCCCCCCCccHHHHHHHHHHHHHHhhCC--------CeEEEeeeeeeCC--CcChHHHHHHHH
Confidence 00112223334456899999998888877642 3678889998876 222111 11100
Q ss_pred c--chh--HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 284 F--PPF--QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 284 ~--~~~--~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ... .......++.++|+|+++++++..+ .|..+...++
T Consensus 179 ~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~----~~~~~~i~~~ 221 (292)
T 1vl0_A 179 KTHDELKVVHDQVGTPTSTVDLARVVLKVIDEK----NYGTFHCTCK 221 (292)
T ss_dssp HHCSEEEEESSCEECCEEHHHHHHHHHHHHHHT----CCEEEECCCB
T ss_pred hcCCcEEeecCeeeCCccHHHHHHHHHHHHhcC----CCcEEEecCC
Confidence 0 000 0001234678999999999999874 4555555543
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=159.88 Aligned_cols=223 Identities=14% Similarity=0.108 Sum_probs=150.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 47 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++|||||+|+||++++++|+++ | +.|++++|+.... .++.++.+|+++.+++.+++++. ++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~-----~~ 63 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGK-KNVIASDIVQRDT-----------GGIKFITLDVSNRDEIDRAVEKY-----SI 63 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCG-GGEEEEESSCCCC-----------TTCCEEECCTTCHHHHHHHHHHT-----TC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCC-CEEEEecCCCccc-----------cCceEEEecCCCHHHHHHHHhhc-----CC
Confidence 4899999999999999999998 7 5888888864321 14678899999999988887642 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+||.... ...+.++..+++|+.++..+++++.+. + .+++|++||...+.... +.
T Consensus 64 d~vih~a~~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~~~~v~~SS~~~~~~~~----~~----- 122 (317)
T 3ajr_A 64 DAIFHLAGILSA------KGEKDPALAYKVNMNGTYNILEAAKQH----R--VEKVVIPSTIGVFGPET----PK----- 122 (317)
T ss_dssp CEEEECCCCCHH------HHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEEEEGGGCCTTS----CS-----
T ss_pred cEEEECCcccCC------ccccChHHHhhhhhHHHHHHHHHHHHc----C--CCEEEEecCHHHhCCCC----CC-----
Confidence 999999997521 123567888999999999999988653 2 25999999987653110 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc---hhhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH---IPLFR 281 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~---~~~~~ 281 (358)
...++..+..+...|+.+|++.+.+++.++++. |+++++++|+.+.++...... .....
T Consensus 123 --------------~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~~~g~~~~~~~~~~~~~~~ 184 (317)
T 3ajr_A 123 --------------NKVPSITITRPRTMFGVTKIAAELLGQYYYEKF----GLDVRSLRYPGIISYKAEPTAGTTDYAVE 184 (317)
T ss_dssp --------------SSBCSSSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECSSSCCCSCSSTHHHH
T ss_pred --------------CCccccccCCCCchHHHHHHHHHHHHHHHHHhc----CCeEEEEecCcEeccCCCCCCcchhHHHH
Confidence 011122233456789999999999999887765 899999987777665321110 00000
Q ss_pred hhcchh---------HHhhhcCccchhHHhhhhhhhhcCCCCC-CCceeeecCC
Q 018331 282 LLFPPF---------QKYITKGYVSEDEAGKRLAQVVSDPSLT-KSGVYWSWNK 325 (358)
Q Consensus 282 ~~~~~~---------~~~~~~~~~~~~~~a~~i~~l~~~~~~~-~~G~~~~~d~ 325 (358)
.+.... .......++.++|+|++++.++..+... .+|..+...+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~~~~i~~ 238 (317)
T 3ajr_A 185 IFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTA 238 (317)
T ss_dssp HHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCSCEECCS
T ss_pred HHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCceEecCC
Confidence 000000 0001123567899999999998765432 2344444443
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=177.57 Aligned_cols=231 Identities=13% Similarity=0.076 Sum_probs=158.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHH-HHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~-i~~~~~~~~~~ 120 (358)
++++++|||||+|+||++++++|+++ | +.|++++|+....+.. . ...++.++.+|+++.++ +.++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g-~~V~~~~r~~~~~~~~----~-~~~~v~~v~~Dl~d~~~~~~~~~~----- 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDH-YEVYGLDIGSDAISRF----L-NHPHFHFVEGDISIHSEWIEYHVK----- 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSS-EEEEEEESCCTTTGGG----T-TCTTEEEEECCTTTCHHHHHHHHH-----
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCC-CEEEEEEcCchhhhhh----c-cCCceEEEECCCCCcHHHHHHhhc-----
Confidence 57889999999999999999999998 7 6999999986443211 1 13578899999998754 555554
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
++|+||||||..... ...+.++..+++|+.++..+++++... + +++|++||...+.... .
T Consensus 382 --~~D~Vih~Aa~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~aa~~~----~---~r~V~~SS~~vyg~~~-~----- 441 (660)
T 1z7e_A 382 --KCDVVLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY----R---KRIIFPSTSEVYGMCS-D----- 441 (660)
T ss_dssp --HCSEEEECCCCCCTH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT----T---CEEEEECCGGGGBTCC-S-----
T ss_pred --CCCEEEECceecCcc-----ccccCHHHHHHhhhHHHHHHHHHHHHh----C---CEEEEEecHHHcCCCC-C-----
Confidence 589999999975321 123456788999999999999888653 1 4999999976542110 0
Q ss_pred CCccccccccccCCCCCCCCCCCCC------C-CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGG------D-FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
...++.. + ......|+.||++.+.+++.++++. |+++++++||.+.++...
T Consensus 442 ------------------~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRpg~v~Gp~~~ 499 (660)
T 1z7e_A 442 ------------------KYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLD 499 (660)
T ss_dssp ------------------SSBCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEESTTSS
T ss_pred ------------------cccCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECCCcccCCCcc
Confidence 0001111 1 1345689999999999999998775 899999999999998542
Q ss_pred c---------cchh-hhhhhcc--hh---H-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 274 R---------EHIP-LFRLLFP--PF---Q-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 274 ~---------~~~~-~~~~~~~--~~---~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ...+ +...... .. . ......++.++|+|++++.++..+....+|+.+..+++
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g~~~ni~~~ 568 (660)
T 1z7e_A 500 NLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNP 568 (660)
T ss_dssp CHHHHTTTCSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCG
T ss_pred ccccccccccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCCeEEEECCC
Confidence 1 0000 1110000 00 0 00112367899999999999987643356777777664
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.7e-18 Score=156.81 Aligned_cols=204 Identities=14% Similarity=0.088 Sum_probs=144.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||+++++.|+++| +.|++++|. ++|+++.+++.++++.. ++|+
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~r~---------------------~~D~~d~~~~~~~~~~~-----~~d~ 59 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEE-YDIYPFDKK---------------------LLDITNISQVQQVVQEI-----RPHI 59 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTT-EEEEEECTT---------------------TSCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeccc---------------------ccCCCCHHHHHHHHHhc-----CCCE
Confidence 79999999999999999999999 699999992 38999999999888865 6999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||..... ...+.++..+++|+.++..+++++.+. + .++|++||...+...
T Consensus 60 vi~~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~~----~---~~~v~~SS~~vy~~~-------------- 113 (287)
T 3sc6_A 60 IIHCAAYTKVD-----QAEKERDLAYVINAIGARNVAVASQLV----G---AKLVYISTDYVFQGD-------------- 113 (287)
T ss_dssp EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHHHH----T---CEEEEEEEGGGSCCC--------------
T ss_pred EEECCcccChH-----HHhcCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEEchhhhcCCC--------------
Confidence 99999986321 122567889999999999999998654 2 489999998755211
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc-
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP- 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~- 285 (358)
...+.++..+..+...|+.+|.+.+.+++.++. .++.++||.+.++....-...+......
T Consensus 114 ----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~--------~~~ilR~~~v~G~~~~~~~~~~~~~~~~~ 175 (287)
T 3sc6_A 114 ----------RPEGYDEFHNPAPINIYGASKYAGEQFVKELHN--------KYFIVRTSWLYGKYGNNFVKTMIRLGKER 175 (287)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEECSSSCCHHHHHHHHHTTC
T ss_pred ----------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhCC--------CcEEEeeeeecCCCCCcHHHHHHHHHHcC
Confidence 011223334445567899999998888876643 4578999999887432111111111100
Q ss_pred -hhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 286 -PFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 286 -~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.+. ......++.++|+|+++++++..+. +| .+...+
T Consensus 176 ~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~---~~-~~~i~~ 214 (287)
T 3sc6_A 176 EEISVVADQIGSPTYVADLNVMINKLIHTSL---YG-TYHVSN 214 (287)
T ss_dssp SEEEEECSCEECCEEHHHHHHHHHHHHTSCC---CE-EEECCC
T ss_pred CCeEeecCcccCceEHHHHHHHHHHHHhCCC---CC-eEEEcC
Confidence 000 0012346779999999999998764 45 444444
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-18 Score=157.48 Aligned_cols=211 Identities=16% Similarity=0.152 Sum_probs=144.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+++++|||||+|+||++++++|+++| +.|++++|+. .+|+++.+++.++++.. +
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~v~~~~r~~--------------------~~D~~d~~~~~~~~~~~-----~ 55 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----R 55 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----C
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCC-CeEEEEecCc--------------------cCCccCHHHHHHHHHhc-----C
Confidence 45789999999999999999999999 5888888762 27999999988887754 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+||..... ....+..+..+++|+.++..+++++... + ..++|++||...+... .. ..+
T Consensus 56 ~d~vih~a~~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~----~--~~~~v~~SS~~vyg~~-~~-----~~~ 119 (321)
T 1e6u_A 56 IDQVYLAAAKVGGI----VANNTYPADFIYQNMMIESNIIHAAHQN----D--VNKLLFLGSSCIYPKL-AK-----QPM 119 (321)
T ss_dssp CSEEEECCCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHT----T--CCEEEEECCGGGSCTT-CC-----SSB
T ss_pred CCEEEEcCeecCCc----chhhhCHHHHHHHHHHHHHHHHHHHHHh----C--CCeEEEEccHHHcCCC-CC-----CCc
Confidence 99999999975311 1123456788999999999999988653 1 2599999998765211 00 000
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc-----cchh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-----EHIP 278 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-----~~~~ 278 (358)
.+-. . ......+....|+.+|++.+.+++.++++. |+++++++||.+.++.... ...+
T Consensus 120 ~E~~------------~-~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~~~~~~~~~~~~ 182 (321)
T 1e6u_A 120 AESE------------L-LQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHDNFHPSNSHVIP 182 (321)
T ss_dssp CGGG------------T-TSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTCCCCTTCSSHHH
T ss_pred Cccc------------c-ccCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEEeCCcCCcCCCCCCCCCccHH
Confidence 0000 0 000122334689999999999999988765 8999999999999985532 1111
Q ss_pred -hhhhhcc-------hhH----HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 279 -LFRLLFP-------PFQ----KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 279 -~~~~~~~-------~~~----~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
+...... .+. ......++.++|+|++++.++..+.
T Consensus 183 ~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~ 229 (321)
T 1e6u_A 183 ALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAH 229 (321)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcc
Confidence 1111100 000 0011235789999999999997653
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=159.20 Aligned_cols=221 Identities=10% Similarity=0.013 Sum_probs=147.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++++++|||||+|+||++++++|+++| + +.. .....+.++.+|+++.+++.++++..
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~------~~~-----------~~~~~~~~~~~D~~d~~~~~~~~~~~---- 60 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGA-G------LPG-----------EDWVFVSSKDADLTDTAQTRALFEKV---- 60 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTT-C------CTT-----------CEEEECCTTTCCTTSHHHHHHHHHHS----
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcC-C------ccc-----------ccccccCceecccCCHHHHHHHHhhc----
Confidence 3678899999999999999999999999 4 110 00123445579999999988888742
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++|+|||+|+..... ....+..+..+++|+.++..+++++.... ..++|++||...+... ..
T Consensus 61 -~~d~Vih~A~~~~~~----~~~~~~~~~~~~~nv~gt~~ll~a~~~~~------~~~~v~~SS~~vyg~~------~~- 122 (319)
T 4b8w_A 61 -QPTHVIHLAAMVGGL----FRNIKYNLDFWRKNVHMNDNVLHSAFEVG------ARKVVSCLSTCIFPDK------TT- 122 (319)
T ss_dssp -CCSEEEECCCCCCCH----HHHTTCHHHHHHHHHHHHHHHHHHHHHTT------CSEEEEECCGGGSCSS------CC-
T ss_pred -CCCEEEECceecccc----cccccCHHHHHHHHHHHHHHHHHHHHHcC------CCeEEEEcchhhcCCC------CC-
Confidence 699999999985321 11234566789999999999998885432 1599999998654211 00
Q ss_pred CccccccccccCCCCCCCCCCCC-----CCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDG-----GDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
.+.++. .+.+....|+.+|.+.+.+++.++++. |+.+++++||.+.++......
T Consensus 123 -----------------~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~Gp~~~~~~ 181 (319)
T 4b8w_A 123 -----------------YPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY----GCTFTAVIPTNVFGPHDNFNI 181 (319)
T ss_dssp -----------------SSBCGGGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCCCT
T ss_pred -----------------CCccccccccCCCCCCcchHHHHHHHHHHHHHHHHHhh----CCCEEEEeeccccCCCCCCCC
Confidence 011111 122334479999999999999988775 899999999999998643211
Q ss_pred -----hh-hhhhhcc-hhH---------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 277 -----IP-LFRLLFP-PFQ---------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 277 -----~~-~~~~~~~-~~~---------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.+ +...+.. ... ......++.++|+|++++.++..+.. ..|..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~-~~~~~~ni~ 244 (319)
T 4b8w_A 182 EDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNE-VEPIILSVG 244 (319)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCC-SSCEEECCC
T ss_pred ccccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhcccc-CCceEEEec
Confidence 01 1111000 000 00112357899999999999987543 345555444
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-18 Score=155.80 Aligned_cols=216 Identities=11% Similarity=-0.021 Sum_probs=144.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++|.+.|++++|+..... ...+. ++. +.+|+++.+.+..+++.. .++++|+
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----~~~-~~~d~~~~~~~~~~~~~~--~~~~~d~ 71 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----DLN-IADYMDKEDFLIQIMAGE--EFGDVEA 71 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----TSC-CSEEEEHHHHHHHHHTTC--CCSSCCE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----cce-eccccccHHHHHHHHhcc--ccCCCcE
Confidence 48999999999999999999999448888888754321 01111 122 678999888777665411 0236999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||.... ..+.++..+++|+.++..+++++.+. + . ++|++||...+... . .
T Consensus 72 vi~~a~~~~~-------~~~~~~~~~~~n~~~~~~l~~a~~~~----~--~-~~v~~SS~~v~g~~-~-----~------ 125 (310)
T 1eq2_A 72 IFHEGACSST-------TEWDGKYMMDNNYQYSKELLHYCLER----E--I-PFLYASSAATYGGR-T-----S------ 125 (310)
T ss_dssp EEECCSCCCT-------TCCCHHHHHHHTHHHHHHHHHHHHHH----T--C-CEEEEEEGGGGTTC-C-----S------
T ss_pred EEECcccccC-------cccCHHHHHHHHHHHHHHHHHHHHHc----C--C-eEEEEeeHHHhCCC-C-----C------
Confidence 9999997632 22456788999999999999988654 2 3 99999998654211 0 0
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccc-----cchh-hh
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFR-----EHIP-LF 280 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~-----~~~~-~~ 280 (358)
.+.++..+..+...|+.+|.+.+.+++.++.+. |+++++++||.+.++.... ...+ +.
T Consensus 126 ------------~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~G~~~~~~~~~~~~~~~~~ 189 (310)
T 1eq2_A 126 ------------DFIESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASVAFHLN 189 (310)
T ss_dssp ------------CBCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCGGGGGGSCHHHHHH
T ss_pred ------------CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEeCCcEECcCCCCCCccchHHHHHH
Confidence 011111223345689999999999999887653 8999999999999985431 1111 11
Q ss_pred hhhcc--h---hH-Hhh-hcCccchhHHhhhhhhhhcCCC
Q 018331 281 RLLFP--P---FQ-KYI-TKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 281 ~~~~~--~---~~-~~~-~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
..... . +. ... ...++.++|+|++++.++..+.
T Consensus 190 ~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~ 229 (310)
T 1eq2_A 190 TQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV 229 (310)
T ss_dssp HHHHC-------------CBCEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC
Confidence 11100 0 10 011 2356889999999999997654
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=160.98 Aligned_cols=222 Identities=13% Similarity=0.050 Sum_probs=143.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++.++++|||||+|+||++++++|+++| +.|++++|+..........+.. ...++.++.+|++
T Consensus 4 ~~~~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------------- 68 (321)
T 3vps_A 4 NTLKHRILITGGAGFIGGHLARALVASG-EEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-------------- 68 (321)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTT-CCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT--------------
T ss_pred ccCCCeEEEECCCChHHHHHHHHHHHCC-CEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc--------------
Confidence 3567899999999999999999999999 5999999976410000001110 1234556666665
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+|||+||...... ..+.....++ |+.++..+++++..... .++|++||...+...
T Consensus 69 ---~~d~vi~~a~~~~~~~-----~~~~~~~~~~-n~~~~~~ll~a~~~~~v------~~~v~~SS~~v~~~~------- 126 (321)
T 3vps_A 69 ---DVRLVYHLASHKSVPR-----SFKQPLDYLD-NVDSGRHLLALCTSVGV------PKVVVGSTCEVYGQA------- 126 (321)
T ss_dssp ---TEEEEEECCCCCCHHH-----HTTSTTTTHH-HHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCSC-------
T ss_pred ---cCCEEEECCccCChHH-----HHhCHHHHHH-HHHHHHHHHHHHHHcCC------CeEEEecCHHHhCCC-------
Confidence 6999999999764211 1122234566 99999999998866532 599999998765311
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc-EEEEecCCcccCCcccccc-h
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREH-I 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI-~v~~v~PG~v~t~~~~~~~-~ 277 (358)
...+.++..+..+...|+.+|.+.+.+++.++.+. |+ .+++++||.+.++...... .
T Consensus 127 -----------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~~~~~ 185 (321)
T 3vps_A 127 -----------------DTLPTPEDSPLSPRSPYAASKVGLEMVAGAHQRAS----VAPEVGIVRFFNVYGPGERPDALV 185 (321)
T ss_dssp -----------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS----SSCEEEEEEECEEECTTCCTTSHH
T ss_pred -----------------CCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCceEEEEeccccCcCCCCCChH
Confidence 01122233444556789999999999999888764 88 9999999999998544311 1
Q ss_pred h-hhhhhcc-----hhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 278 P-LFRLLFP-----PFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 278 ~-~~~~~~~-----~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
+ +...... ... ......++.++|+|++++.++..+.. | .+...+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~---g-~~~i~~ 236 (321)
T 3vps_A 186 PRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP---S-VVNFGS 236 (321)
T ss_dssp HHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC---S-EEEESC
T ss_pred HHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC---C-eEEecC
Confidence 1 1111000 000 00112357999999999999987653 6 555444
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.74 E-value=2.8e-17 Score=150.87 Aligned_cols=198 Identities=14% Similarity=0.079 Sum_probs=138.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
|++|||||+|+||++++++|+++ | +.|++++|+..+.+.... .++.++.+|+++.+++.++++ +
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~l~~------~~~~~~~~D~~d~~~l~~~~~-------~ 66 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPA-SQIIAIVRNVEKASTLAD------QGVEVRHGDYNQPESLQKAFA-------G 66 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTTHHHHH------TTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCC-CeEEEEEcCHHHHhHHhh------cCCeEEEeccCCHHHHHHHHh-------c
Confidence 46999999999999999999999 8 689999998755443321 367899999999988877755 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+||.. . . + ++|+.++..+++++.. .+ .++||++||.....
T Consensus 67 ~d~vi~~a~~~-~-------~-~------~~n~~~~~~l~~a~~~----~~--~~~~v~~Ss~~~~~------------- 112 (287)
T 2jl1_A 67 VSKLLFISGPH-Y-------D-N------TLLIVQHANVVKAARD----AG--VKHIAYTGYAFAEE------------- 112 (287)
T ss_dssp CSEEEECCCCC-S-------C-H------HHHHHHHHHHHHHHHH----TT--CSEEEEEEETTGGG-------------
T ss_pred CCEEEEcCCCC-c-------C-c------hHHHHHHHHHHHHHHH----cC--CCEEEEECCCCCCC-------------
Confidence 89999999852 1 1 1 5788888888887743 22 25999999976531
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
....|+.+|.+.+.+++. .|+.++.++||.+.++.............
T Consensus 113 -------------------------~~~~y~~~K~~~E~~~~~--------~~~~~~ilrp~~~~~~~~~~~~~~~~~~~ 159 (287)
T 2jl1_A 113 -------------------------SIIPLAHVHLATEYAIRT--------TNIPYTFLRNALYTDFFVNEGLRASTESG 159 (287)
T ss_dssp -------------------------CCSTHHHHHHHHHHHHHH--------TTCCEEEEEECCBHHHHSSGGGHHHHHHT
T ss_pred -------------------------CCCchHHHHHHHHHHHHH--------cCCCeEEEECCEeccccchhhHHHHhhCC
Confidence 112699999998877642 48999999999987653211111100000
Q ss_pred cchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 284 FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 284 ~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.... .......++.++|+|++++.++..+. ..|+.+...++
T Consensus 160 ~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~~ 201 (287)
T 2jl1_A 160 AIVTNAGSGIVNSVTRNELALAAATVLTEEG--HENKTYNLVSN 201 (287)
T ss_dssp EEEESCTTCCBCCBCHHHHHHHHHHHHTSSS--CTTEEEEECCS
T ss_pred ceeccCCCCccCccCHHHHHHHHHHHhcCCC--CCCcEEEecCC
Confidence 0000 00112347899999999999998754 36777776665
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-18 Score=158.75 Aligned_cols=210 Identities=13% Similarity=0.035 Sum_probs=141.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+++++|||| +|+||+++++.|+++| +.|++++|+.+.. ..++.++.+|+++.+++.++++ ++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g-~~V~~~~r~~~~~----------~~~~~~~~~Dl~d~~~~~~~~~------~~ 63 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQG-HEVTGLRRSAQPM----------PAGVQTLIADVTRPDTLASIVH------LR 63 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTT-CCEEEEECTTSCC----------CTTCCEEECCTTCGGGCTTGGG------GC
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCC-CEEEEEeCCcccc----------ccCCceEEccCCChHHHHHhhc------CC
Confidence 457899999 5999999999999999 5999999986431 3578899999999988777654 26
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+||.. ....+..+++|+.++..+++++. +.+ .+++|++||...+...
T Consensus 64 ~d~vih~a~~~----------~~~~~~~~~~n~~~~~~ll~a~~----~~~--~~~~v~~SS~~vyg~~----------- 116 (286)
T 3gpi_A 64 PEILVYCVAAS----------EYSDEHYRLSYVEGLRNTLSALE----GAP--LQHVFFVSSTGVYGQE----------- 116 (286)
T ss_dssp CSEEEECHHHH----------HHC-----CCSHHHHHHHHHHTT----TSC--CCEEEEEEEGGGCCCC-----------
T ss_pred CCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHHHHHh----hCC--CCEEEEEcccEEEcCC-----------
Confidence 99999999964 13346678899999988888775 332 2699999998654211
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
...+.++..+..+...|+.+|.+.+.+ +. + +.+++++||.+.++... .+...+
T Consensus 117 -------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~----~-----~~~~ilR~~~v~G~~~~----~~~~~~ 169 (286)
T 3gpi_A 117 -------------VEEWLDEDTPPIAKDFSGKRMLEAEAL-LA----A-----YSSTILRFSGIYGPGRL----RMIRQA 169 (286)
T ss_dssp -------------CSSEECTTSCCCCCSHHHHHHHHHHHH-GG----G-----SSEEEEEECEEEBTTBC----HHHHHT
T ss_pred -------------CCCCCCCCCCCCCCChhhHHHHHHHHH-Hh----c-----CCeEEEecccccCCCch----hHHHHH
Confidence 001122333445567899999996666 32 1 78999999999987542 111122
Q ss_pred cc-hh--HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 FP-PF--QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 ~~-~~--~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. .. .......++.++|+|++++.++..+.....|..+...+
T Consensus 170 ~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~ 214 (286)
T 3gpi_A 170 QTPEQWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPERLYIVTD 214 (286)
T ss_dssp TCGGGSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred HhcccCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCceEEEeC
Confidence 11 00 00111236789999999999998753223444555443
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=149.17 Aligned_cols=202 Identities=14% Similarity=0.046 Sum_probs=138.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|++ | +.|++++|+... . .+ +.+|+++.+++.++++.+ ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~-g-~~V~~~~r~~~~--------~---~~---~~~Dl~~~~~~~~~~~~~-----~~d~ 60 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLSE-R-HEVIKVYNSSEI--------Q---GG---YKLDLTDFPRLEDFIIKK-----RPDV 60 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHTT-T-SCEEEEESSSCC--------T---TC---EECCTTSHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCChhHHHHHHHHhc-C-CeEEEecCCCcC--------C---CC---ceeccCCHHHHHHHHHhc-----CCCE
Confidence 599999999999999999994 8 699999998631 0 11 789999999999988865 6999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||.... ..+.+.++..+++|+.++..+++++.+ . +++||++||...+.+.. .
T Consensus 61 vi~~a~~~~~-----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~---~~~iv~~SS~~~~~~~~-----~------- 116 (273)
T 2ggs_A 61 IINAAAMTDV-----DKCEIEKEKAYKINAEAVRHIVRAGKV----I---DSYIVHISTDYVFDGEK-----G------- 116 (273)
T ss_dssp EEECCCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHH----T---TCEEEEEEEGGGSCSSS-----C-------
T ss_pred EEECCcccCh-----hhhhhCHHHHHHHhHHHHHHHHHHHHH----h---CCeEEEEecceeEcCCC-----C-------
Confidence 9999997532 123467889999999999999999864 2 25999999988763110 0
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh-hhh--
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF-RLL-- 283 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~-~~~-- 283 (358)
+.++..+..+...|+.+|++.+.+++. + ....++|+.+.++ ....... ...
T Consensus 117 -------------~~~e~~~~~~~~~Y~~sK~~~e~~~~~----~------~~~~iR~~~v~G~---~~~~~~~~~~~~~ 170 (273)
T 2ggs_A 117 -------------NYKEEDIPNPINYYGLSKLLGETFALQ----D------DSLIIRTSGIFRN---KGFPIYVYKTLKE 170 (273)
T ss_dssp -------------SBCTTSCCCCSSHHHHHHHHHHHHHCC----T------TCEEEEECCCBSS---SSHHHHHHHHHHT
T ss_pred -------------CcCCCCCCCCCCHHHHHHHHHHHHHhC----C------CeEEEeccccccc---cHHHHHHHHHHHc
Confidence 111222333456899999998888775 2 2345566666531 1111100 000
Q ss_pred -c--chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 -F--PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 -~--~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. ..... ...++.++|+|++++++++.+. +| .+..++
T Consensus 171 ~~~~~~~~~--~~~~~~~~dva~~i~~~~~~~~---~g-~~~i~~ 209 (273)
T 2ggs_A 171 GKTVFAFKG--YYSPISARKLASAILELLELRK---TG-IIHVAG 209 (273)
T ss_dssp TCCEEEESC--EECCCBHHHHHHHHHHHHHHTC---CE-EEECCC
T ss_pred CCCEEeecC--CCCceEHHHHHHHHHHHHhcCc---CC-eEEECC
Confidence 0 00000 3457899999999999998652 56 455554
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=167.94 Aligned_cols=191 Identities=14% Similarity=0.127 Sum_probs=132.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.+++|++|||||+|+||++++++|+++| +.|++++|+........+.+.. ...++.++.+|+++.+++.+++++.
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G-~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~-- 83 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-- 83 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS--
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhC--
Confidence 35778999999999999999999999999 5999998864321111111110 1356889999999999988887643
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||||||..... ...+..+..+++|+.++..+++++... + .++||++||...+.....
T Consensus 84 ---~~D~Vih~A~~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~--~~~iV~~SS~~vyg~~~~----- 144 (699)
T 1z45_A 84 ---KIDSVIHFAGLKAVG-----ESTQIPLRYYHNNILGTVVLLELMQQY----N--VSKFVFSSSATVYGDATR----- 144 (699)
T ss_dssp ---CCCEEEECCSCCCHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHH----T--CCEEEEEEEGGGGCCGGG-----
T ss_pred ---CCCEEEECCcccCcC-----ccccCHHHHHHHHHHHHHHHHHHHHHc----C--CCEEEEECcHHHhCCCcc-----
Confidence 699999999975321 012334567899999999998877543 2 269999999765421100
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+. ...+..+..+..+...|+.+|++.+.+++.++.+. ..|+.+.+++|+.+.++
T Consensus 145 ---~~------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 145 ---FP------------NMIPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp ---ST------------TCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred ---cc------------ccCCccccCCCCCCChHHHHHHHHHHHHHHHHHhc--cCCCcEEEEEeccccCC
Confidence 00 00111222233456689999999999999988763 35899999999888775
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.3e-17 Score=162.10 Aligned_cols=230 Identities=17% Similarity=0.109 Sum_probs=150.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH---HHHHHHhc---------CCCCceEEEEecCCCHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSAG---------MAKENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~---~~~~~~~~---------~~~~~i~~~~~Dl~~~~~i~~ 112 (358)
.++||||||||+||++++++|++.| +.|+++.|+.... +...+.+. ....++.++.+|+++.+.+.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~- 227 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYS-HRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV- 227 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTE-EEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-
T ss_pred CCeEEEECCccchHHHHHHHHHhcC-CEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-
Confidence 4799999999999999999999999 6999999986532 22222221 12468999999999977666
Q ss_pred HHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 113 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 113 ~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
...++|+|||||+.... ...++..+++|+.++..+++++.. . ..++|++||... +.
T Consensus 228 -------~~~~~D~Vih~Aa~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~----~---~~~~v~iSS~~v--G~ 283 (508)
T 4f6l_B 228 -------LPENMDTIIHAGARTDH--------FGDDDEFEKVNVQGTVDVIRLAQQ----H---HARLIYVSTISV--GT 283 (508)
T ss_dssp -------CSSCCSEEEECCCC----------------CCHHHHHHHHHHHHHHHHT----T---TCEEEEEEESCT--TS
T ss_pred -------CccCCCEEEECCceecC--------CCCHHHHhhhHHHHHHHHHHHHHh----C---CCcEEEeCChhh--cc
Confidence 34689999999997632 234677889999999999998865 2 269999999876 22
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCC---CchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccC
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD---FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t 269 (358)
.....+.. .+..+..+ ......|+.+|++.+.+++.++. .|+++++++||.|.+
T Consensus 284 ~~~~~~~~------------------~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~gi~~~ilRp~~v~G 340 (508)
T 4f6l_B 284 YFDIDTED------------------VTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNLTS 340 (508)
T ss_dssp EECTTCSC------------------CEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-----TTCEEEEEEECCEES
T ss_pred CCccCCcC------------------cccccccccccccCCCcHHHHHHHHHHHHHHHHH-----cCCCEEEEecceecc
Confidence 11110000 01111111 23567899999998888887642 499999999999998
Q ss_pred Ccccccc---------hhhhhhhcc--hhH---HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 270 TGLFREH---------IPLFRLLFP--PFQ---KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 270 ~~~~~~~---------~~~~~~~~~--~~~---~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+.....+ ..+...... .+. ......++.++++|++++.++..+. .|..+...++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~v~v~DvA~ai~~~~~~~~---~~~~~nl~~~ 408 (508)
T 4f6l_B 341 PYNGRWHMRNIKTNRFSMVMNDLLQLDCIGVSMAEMPVDFSFVDTTARQIVALAQVNT---PQIIYHVLSP 408 (508)
T ss_dssp CSSSCCCCTTCTTCHHHHHHHHHTTCSEEETTGGGSEEECEEHHHHHHHHHHHTTBCC---SCSEEEESCS
T ss_pred CCCCCcccCCcchHHHHHHHHHHHHcCCCCCCccCceEEEEcHHHHHHHHHHHHhCCC---CCCEEEeCCC
Confidence 7543321 011111110 000 0112236789999999999998765 4455554443
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-17 Score=152.79 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=142.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+ +| +.|++++|+. .++.+|+++.+++.++++.. ++|+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g-~~V~~~~r~~-----------------~~~~~D~~d~~~~~~~~~~~-----~~d~ 57 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PV-GNLIALDVHS-----------------KEFCGDFSNPKGVAETVRKL-----RPDV 57 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TT-SEEEEECTTC-----------------SSSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred eEEEECCCCHHHHHHHHHhh-cC-CeEEEecccc-----------------ccccccCCCHHHHHHHHHhc-----CCCE
Confidence 69999999999999999999 89 6999999975 13579999999988888754 5999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||..... ...+.++..+++|+.++..+++++.. .+ .++|++||...+....
T Consensus 58 vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~----~~---~~~v~~SS~~vy~~~~------------- 112 (299)
T 1n2s_A 58 IVNAAAHTAVD-----KAESEPELAQLLNATSVEAIAKAANE----TG---AWVVHYSTDYVFPGTG------------- 112 (299)
T ss_dssp EEECCCCCCHH-----HHTTCHHHHHHHHTHHHHHHHHHHTT----TT---CEEEEEEEGGGSCCCT-------------
T ss_pred EEECcccCCHh-----hhhcCHHHHHHHHHHHHHHHHHHHHH----cC---CcEEEEecccEEeCCC-------------
Confidence 99999975321 12345678899999999999988842 22 4899999987653110
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhhcc
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLLFP 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~~~ 285 (358)
..+.++..+..+...|+.+|++.+.+++.++. +++.++||.+.++... .... +......
T Consensus 113 -----------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~--------~~~ilRp~~v~G~~~~-~~~~~~~~~~~~ 172 (299)
T 1n2s_A 113 -----------DIPWQETDATSPLNVYGKTKLAGEKALQDNCP--------KHLIFRTSWVYAGKGN-NFAKTMLRLAKE 172 (299)
T ss_dssp -----------TCCBCTTSCCCCSSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEECSSSC-CHHHHHHHHHHH
T ss_pred -----------CCCCCCCCCCCCccHHHHHHHHHHHHHHHhCC--------CeEEEeeeeecCCCcC-cHHHHHHHHHhc
Confidence 00112222334456899999998888776532 7889999999998542 1111 1111000
Q ss_pred --hh--HHhhhcCccchhHHhhhhhhhhcCCCCCC-CceeeecCC
Q 018331 286 --PF--QKYITKGYVSEDEAGKRLAQVVSDPSLTK-SGVYWSWNK 325 (358)
Q Consensus 286 --~~--~~~~~~~~~~~~~~a~~i~~l~~~~~~~~-~G~~~~~d~ 325 (358)
.. .......++.++|+|++++.++..+.... .|..+...+
T Consensus 173 ~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~i~~ 217 (299)
T 1n2s_A 173 RQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVA 217 (299)
T ss_dssp CSEEEEECSCEECCEEHHHHHHHHHHHHHHHHHCGGGCEEEECCC
T ss_pred CCCEEeecCcccCCeeHHHHHHHHHHHHHHhccccccCceEEEeC
Confidence 00 00011335679999999999997652111 244454444
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=146.11 Aligned_cols=194 Identities=16% Similarity=0.175 Sum_probs=130.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 47 SVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++|||||+|+||+++++.|+++ | +.|++++|+....+.... .++.++.+|+++.+++.++++ ++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~-------~~ 66 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPA-SQIVAIVRNPAKAQALAA------QGITVRQADYGDEAALTSALQ-------GV 66 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCG-GGEEEEESCTTTCHHHHH------TTCEEEECCTTCHHHHHHHTT-------TC
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCC-ceEEEEEcChHhhhhhhc------CCCeEEEcCCCCHHHHHHHHh-------CC
Confidence 4899999999999999999998 8 689999998755443221 357899999999988877654 68
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+||... ..|+.++..+++++... + .++||++||...+.
T Consensus 67 d~vi~~a~~~~-----------------~~~~~~~~~l~~a~~~~----~--~~~~v~~Ss~~~~~-------------- 109 (286)
T 2zcu_A 67 EKLLLISSSEV-----------------GQRAPQHRNVINAAKAA----G--VKFIAYTSLLHADT-------------- 109 (286)
T ss_dssp SEEEECC-------------------------CHHHHHHHHHHHH----T--CCEEEEEEETTTTT--------------
T ss_pred CEEEEeCCCCc-----------------hHHHHHHHHHHHHHHHc----C--CCEEEEECCCCCCC--------------
Confidence 99999998521 02566666666666443 2 25999999976541
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh-
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL- 283 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~- 283 (358)
....|+.+|.+.+.+++. .|++++.++||++.++.. ..........
T Consensus 110 ------------------------~~~~y~~sK~~~e~~~~~--------~~~~~~ilrp~~~~~~~~-~~~~~~~~~~~ 156 (286)
T 2zcu_A 110 ------------------------SPLGLADEHIETEKMLAD--------SGIVYTLLRNGWYSENYL-ASAPAALEHGV 156 (286)
T ss_dssp ------------------------CCSTTHHHHHHHHHHHHH--------HCSEEEEEEECCBHHHHH-TTHHHHHHHTE
T ss_pred ------------------------CcchhHHHHHHHHHHHHH--------cCCCeEEEeChHHhhhhH-HHhHHhhcCCc
Confidence 113699999998877653 389999999998866421 1100000000
Q ss_pred cchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 284 FPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...........++.++|+|+++++++..+. .+|+.+...++
T Consensus 157 ~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~--~~g~~~~i~~~ 197 (286)
T 2zcu_A 157 FIGAAGDGKIASATRADYAAAAARVISEAG--HEGKVYELAGD 197 (286)
T ss_dssp EEESCTTCCBCCBCHHHHHHHHHHHHHSSS--CTTCEEEECCS
T ss_pred eeccCCCCccccccHHHHHHHHHHHhcCCC--CCCceEEEeCC
Confidence 000000112347899999999999998754 36766766665
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-16 Score=140.76 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=132.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+++||||| |+||+++++.|+++| +.|++++|+....+.... .++.++.+|+++.+ +.++|
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g-~~V~~~~r~~~~~~~~~~------~~~~~~~~D~~d~~------------~~~~d 65 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQG-WRIIGTSRNPDQMEAIRA------SGAEPLLWPGEEPS------------LDGVT 65 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGT-CEEEEEESCGGGHHHHHH------TTEEEEESSSSCCC------------CTTCC
T ss_pred CcEEEECC-cHHHHHHHHHHHHCC-CEEEEEEcChhhhhhHhh------CCCeEEEecccccc------------cCCCC
Confidence 68999998 999999999999999 699999999876554432 46899999999832 45799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+|+..... .. ..+.++..+.+......++|++||...+...
T Consensus 66 ~vi~~a~~~~~~------~~----------------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~------------- 110 (286)
T 3ius_A 66 HLLISTAPDSGG------DP----------------VLAALGDQIAARAAQFRWVGYLSTTAVYGDH------------- 110 (286)
T ss_dssp EEEECCCCBTTB------CH----------------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCC-------------
T ss_pred EEEECCCccccc------cH----------------HHHHHHHHHHhhcCCceEEEEeecceecCCC-------------
Confidence 999999976321 11 0133333333311012699999997654210
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh-hhc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR-LLF 284 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~-~~~ 284 (358)
...+.++..+..+...|+.+|.+.+.+++.+ .|+++++++||.+.++.... ...+.. ...
T Consensus 111 -----------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~-------~~~~~~ilRp~~v~G~~~~~-~~~~~~~~~~ 171 (286)
T 3ius_A 111 -----------DGAWVDETTPLTPTAARGRWRVMAEQQWQAV-------PNLPLHVFRLAGIYGPGRGP-FSKLGKGGIR 171 (286)
T ss_dssp -----------TTCEECTTSCCCCCSHHHHHHHHHHHHHHHS-------TTCCEEEEEECEEEBTTBSS-STTSSSSCCC
T ss_pred -----------CCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh-------cCCCEEEEeccceECCCchH-HHHHhcCCcc
Confidence 0011223334445678999999987777655 48999999999998875321 111100 000
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..........++.++|+|++++.++..+. .|..+...+
T Consensus 172 ~~~~~~~~~~~i~v~Dva~a~~~~~~~~~---~g~~~~i~~ 209 (286)
T 3ius_A 172 RIIKPGQVFSRIHVEDIAQVLAASMARPD---PGAVYNVCD 209 (286)
T ss_dssp EEECTTCCBCEEEHHHHHHHHHHHHHSCC---TTCEEEECC
T ss_pred ccCCCCcccceEEHHHHHHHHHHHHhCCC---CCCEEEEeC
Confidence 01111122356889999999999998865 454554443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.9e-15 Score=141.48 Aligned_cols=206 Identities=17% Similarity=0.162 Sum_probs=133.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++.+++|||||||+||+++++.|+++| +.|++++|+. .+.+.. +.+. ..++.++.+|++|.+++.+++++.
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~-~~l~--~~~v~~~~~Dl~d~~~l~~~~~~~- 82 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAH-RPTYILARPGPRSPSKAKIF-KALE--DKGAIIVYGLINEQEAMEKILKEH- 82 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTT-CCEEEEECSSCCCHHHHHHH-HHHH--HTTCEEEECCTTCHHHHHHHHHHT-
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCC-CCEEEEECCCCCChhHHHHH-HHHH--hCCcEEEEeecCCHHHHHHHHhhC-
Confidence 446789999999999999999999999 6999999975 233222 1221 257899999999999988887753
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++|+|||++|.. |+.+...+++++..... -.++|+ |..+..
T Consensus 83 ----~~d~Vi~~a~~~--------------------n~~~~~~l~~aa~~~g~-----v~~~v~--S~~g~~-------- 123 (346)
T 3i6i_A 83 ----EIDIVVSTVGGE--------------------SILDQIALVKAMKAVGT-----IKRFLP--SEFGHD-------- 123 (346)
T ss_dssp ----TCCEEEECCCGG--------------------GGGGHHHHHHHHHHHCC-----CSEEEC--SCCSSC--------
T ss_pred ----CCCEEEECCchh--------------------hHHHHHHHHHHHHHcCC-----ceEEee--cccCCC--------
Confidence 699999999872 77788888877765420 136664 322220
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
.++..+......|+.+|.+.+.+.+. .|+.++.++||.+.+.....-..+
T Consensus 124 ----------------------~~e~~~~~p~~~y~~sK~~~e~~l~~--------~g~~~tivrpg~~~g~~~~~~~~~ 173 (346)
T 3i6i_A 124 ----------------------VNRADPVEPGLNMYREKRRVRQLVEE--------SGIPFTYICCNSIASWPYYNNIHP 173 (346)
T ss_dssp ----------------------TTTCCCCTTHHHHHHHHHHHHHHHHH--------TTCCBEEEECCEESSCCCSCC---
T ss_pred ----------------------CCccCcCCCcchHHHHHHHHHHHHHH--------cCCCEEEEEecccccccCcccccc
Confidence 01122445677899999997766553 489999999999977432111111
Q ss_pred hh---hhh-cchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 279 LF---RLL-FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 279 ~~---~~~-~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.. ... .... .......++.++|+|+.++.++.++.. .|..+...
T Consensus 174 ~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~i~ 222 (346)
T 3i6i_A 174 SEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRT--LNKSVHFR 222 (346)
T ss_dssp --CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGG--TTEEEECC
T ss_pred ccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccc--cCeEEEEe
Confidence 00 000 0000 001123478999999999999987642 34444433
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=140.85 Aligned_cols=208 Identities=14% Similarity=0.071 Sum_probs=132.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|++|||||||+||++++++|+++|.+.|++++|+..+... +.+. ...+.++.+|+++.+++.++++ .+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~--~~~~~~~~~D~~d~~~l~~~~~-------~~ 73 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELR--LQGAEVVQGDQDDQVIMELALN-------GA 73 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHH--HTTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHH--HCCCEEEEecCCCHHHHHHHHh-------cC
Confidence 47899999999999999999999983399999998654321 1111 1357899999999999887765 68
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||+|..... ....|+.+...+++++ ++.+ .++||++|+..... .
T Consensus 74 d~vi~~a~~~~~~-------------~~~~~~~~~~~~~~aa----~~~g--v~~iv~~S~~~~~~-~------------ 121 (299)
T 2wm3_A 74 YATFIVTNYWESC-------------SQEQEVKQGKLLADLA----RRLG--LHYVVYSGLENIKK-L------------ 121 (299)
T ss_dssp SEEEECCCHHHHT-------------CHHHHHHHHHHHHHHH----HHHT--CSEEEECCCCCHHH-H------------
T ss_pred CEEEEeCCCCccc-------------cchHHHHHHHHHHHHH----HHcC--CCEEEEEcCccccc-c------------
Confidence 9999999864210 1234454444444444 4433 25899955533221 0
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-hhhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-LFRLL 283 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-~~~~~ 283 (358)
.+......|+.+|.+++.+.+. .|++++.|+||++.++... ...+ .....
T Consensus 122 --------------------~~~~~~~~y~~sK~~~e~~~~~--------~gi~~~ilrp~~~~~~~~~-~~~~~~~~~g 172 (299)
T 2wm3_A 122 --------------------TAGRLAAAHFDGKGEVEEYFRD--------IGVPMTSVRLPCYFENLLS-HFLPQKAPDG 172 (299)
T ss_dssp --------------------TTTSCCCHHHHHHHHHHHHHHH--------HTCCEEEEECCEEGGGGGT-TTCCEECTTS
T ss_pred --------------------CCCcccCchhhHHHHHHHHHHH--------CCCCEEEEeecHHhhhchh-hcCCcccCCC
Confidence 0001134689999998877653 2899999999999886332 1111 00000
Q ss_pred c--c-hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 F--P-PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 ~--~-~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. . .. .......++.++|+|+.++.++.++.. ..|+.+...+
T Consensus 173 ~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~-~~g~~~~~~g 217 (299)
T 2wm3_A 173 KSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEK-YVGQNIGLST 217 (299)
T ss_dssp SSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHH-HTTCEEECCS
T ss_pred CEEEEEecCCCCccceecHHHHHHHHHHHHcChhh-hCCeEEEeee
Confidence 0 0 00 011122468999999999999986432 2566666655
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=144.33 Aligned_cols=204 Identities=15% Similarity=0.147 Sum_probs=129.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEec-CCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD-LASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~D-l~~~~~i~~~~~~~~~~~~ 122 (358)
+++++|||||||+||++++++|+++| +.|++++|+.+.... +.+.. ..++.++.+| +++.+++.++++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~--~~l~~-~~~v~~v~~D~l~d~~~l~~~~~------- 72 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIA--EELQA-IPNVTLFQGPLLNNVPLMDTLFE------- 72 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHHH--HHHHT-STTEEEEESCCTTCHHHHHHHHT-------
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCChhhH--HHHhh-cCCcEEEECCccCCHHHHHHHHh-------
Confidence 46789999999999999999999999 589999998654321 12211 1368889999 999998887765
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC-CCCCcCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG-NTNTLAGNVPPKA 201 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~-~~~~~~~~~~~~~ 201 (358)
.+|+||||++... ...|..+ ..+++++ ++.+. .++||++||... ..
T Consensus 73 ~~d~Vi~~a~~~~----------------~~~~~~~-~~l~~aa----~~~g~-v~~~V~~SS~~~~~~----------- 119 (352)
T 1xgk_A 73 GAHLAFINTTSQA----------------GDEIAIG-KDLADAA----KRAGT-IQHYIYSSMPDHSLY----------- 119 (352)
T ss_dssp TCSEEEECCCSTT----------------SCHHHHH-HHHHHHH----HHHSC-CSEEEEEECCCGGGT-----------
T ss_pred cCCEEEEcCCCCC----------------cHHHHHH-HHHHHHH----HHcCC-ccEEEEeCCcccccc-----------
Confidence 5899999987531 0224444 4444444 33320 159999999762 21
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+......|+.+|++.+.+++. .|+++++|+||++.+ .......+.+.
T Consensus 120 ------------------------~~~~~~~y~~sK~~~E~~~~~--------~gi~~~ivrpg~~g~-~~~~~~~~~~~ 166 (352)
T 1xgk_A 120 ------------------------GPWPAVPMWAPKFTVENYVRQ--------LGLPSTFVYAGIYNN-NFTSLPYPLFQ 166 (352)
T ss_dssp ------------------------SSCCCCTTTHHHHHHHHHHHT--------SSSCEEEEEECEEGG-GCBSSSCSSCB
T ss_pred ------------------------CCCCCccHHHHHHHHHHHHHH--------cCCCEEEEecceecC-Cchhccccccc
Confidence 001234688999998877653 289999999998743 33221111110
Q ss_pred hh---cc------hhHHhhhcCccch-hHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 282 LL---FP------PFQKYITKGYVSE-DEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 282 ~~---~~------~~~~~~~~~~~~~-~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.. .. +........++.+ +|+|++++.++.++.....|+.+...
T Consensus 167 ~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~~~~l~ 219 (352)
T 1xgk_A 167 MELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALT 219 (352)
T ss_dssp EEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEEC
T ss_pred ccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCeEEEEe
Confidence 00 00 0000011235778 89999999999764222245555444
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=139.11 Aligned_cols=195 Identities=15% Similarity=0.170 Sum_probs=123.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++|||||||+||++++++|++. | +.|+++.|+.++.... ...++.++.+|+++.+++.++++ ++|
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g-~~V~~~~R~~~~~~~~------~~~~v~~~~~D~~d~~~l~~~~~-------~~d 67 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHI-DHFHIGVRNVEKVPDD------WRGKVSVRQLDYFNQESMVEAFK-------GMD 67 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTC-TTEEEEESSGGGSCGG------GBTTBEEEECCTTCHHHHHHHTT-------TCS
T ss_pred EEEEEcCCchHHHHHHHHHhhCCC-CcEEEEECCHHHHHHh------hhCCCEEEEcCCCCHHHHHHHHh-------CCC
Confidence 5999999999999999999998 8 5999999987653321 13578999999999998877765 799
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+||||+|.... . ..|+.+...+ ++.+++.+ .++||++||.....
T Consensus 68 ~vi~~a~~~~~--------~-------~~~~~~~~~l----~~aa~~~g--v~~iv~~Ss~~~~~--------------- 111 (289)
T 3e48_A 68 TVVFIPSIIHP--------S-------FKRIPEVENL----VYAAKQSG--VAHIIFIGYYADQH--------------- 111 (289)
T ss_dssp EEEECCCCCCS--------H-------HHHHHHHHHH----HHHHHHTT--CCEEEEEEESCCST---------------
T ss_pred EEEEeCCCCcc--------c-------hhhHHHHHHH----HHHHHHcC--CCEEEEEcccCCCC---------------
Confidence 99999986521 1 1245554444 44445443 26999999955321
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP 285 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~ 285 (358)
..++. .++.. .+++ ..+ ...|+.++.++||++.++.. ............
T Consensus 112 ------------------~~~~~------~~~~~--~~~e---~~~-~~~g~~~~ilrp~~~~~~~~-~~~~~~~~~~~~ 160 (289)
T 3e48_A 112 ------------------NNPFH------MSPYF--GYAS---RLL-STSGIDYTYVRMAMYMDPLK-PYLPELMNMHKL 160 (289)
T ss_dssp ------------------TCCST------THHHH--HHHH---HHH-HHHCCEEEEEEECEESTTHH-HHHHHHHHHTEE
T ss_pred ------------------CCCCc------cchhH--HHHH---HHH-HHcCCCEEEEeccccccccH-HHHHHHHHCCCE
Confidence 01111 11211 0112 222 23489999999999988632 111000000000
Q ss_pred hhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 286 PFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 286 ~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.+. ......++.++|+|++++.++.++.. .|+.+...
T Consensus 161 ~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~--~g~~~~~~ 198 (289)
T 3e48_A 161 IYPAGDGRINYITRNDIARGVIAIIKNPDT--WGKRYLLS 198 (289)
T ss_dssp CCCCTTCEEEEECHHHHHHHHHHHHHCGGG--TTCEEEEC
T ss_pred ecCCCCceeeeEEHHHHHHHHHHHHcCCCc--CCceEEeC
Confidence 000 00112268999999999999988754 26666666
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=144.26 Aligned_cols=190 Identities=14% Similarity=0.067 Sum_probs=135.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++|||||+|+||++++++|+++|...|+.++|+ ++.+++.++++ ++|+
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------------~d~~~l~~~~~-------~~d~ 49 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------------TKEEELESALL-------KADF 49 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------------CCHHHHHHHHH-------HCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------------CCHHHHHHHhc-------cCCE
Confidence 699999999999999999999993266666654 67788777776 4899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||.... +..+..+++|+.++..+++++. +.+. +.++|++||...+
T Consensus 50 Vih~a~~~~~---------~~~~~~~~~n~~~~~~l~~a~~----~~~~-~~~~v~~Ss~~~~----------------- 98 (369)
T 3st7_A 50 IVHLAGVNRP---------EHDKEFSLGNVSYLDHVLDILT----RNTK-KPAILLSSSIQAT----------------- 98 (369)
T ss_dssp EEECCCSBCT---------TCSTTCSSSCCBHHHHHHHHHT----TCSS-CCEEEEEEEGGGG-----------------
T ss_pred EEECCcCCCC---------CCHHHHHHHHHHHHHHHHHHHH----HhCC-CCeEEEeCchhhc-----------------
Confidence 9999997642 2345578899999999888873 3221 2489999998765
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcc-
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFP- 285 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~- 285 (358)
+...|+.+|.+.+.+++.++++. |+.+..++||.+.++....+...+...+..
T Consensus 99 ----------------------~~~~Y~~sK~~~E~~~~~~~~~~----g~~~~i~R~~~v~G~~~~~~~~~~~~~~~~~ 152 (369)
T 3st7_A 99 ----------------------QDNPYGESKLQGEQLLREYAEEY----GNTVYIYRWPNLFGKWCKPNYNSVIATFCYK 152 (369)
T ss_dssp ----------------------SCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSSCHHHHHHHH
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHh----CCCEEEEECCceeCCCCCCCcchHHHHHHHH
Confidence 14579999999999999998875 789999999999887543321111111110
Q ss_pred --------hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 286 --------PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 286 --------~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
.........++.++|+|++++.++..+.. ..|.++...++
T Consensus 153 ~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~-~~~~~~~i~~~ 200 (369)
T 3st7_A 153 IARNEEIQVNDRNVELTLNYVDDIVAEIKRAIEGTPT-IENGVPTVPNV 200 (369)
T ss_dssp HHTTCCCCCSCTTCEEEEEEHHHHHHHHHHHHHTCCC-EETTEECCSCC
T ss_pred HHcCCCeEecCCCeEEEEEEHHHHHHHHHHHHhCCcc-cCCceEEeCCC
Confidence 00011112367899999999999987653 22556655543
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=133.57 Aligned_cols=201 Identities=14% Similarity=0.178 Sum_probs=125.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++++||||||+||++++++|+++| +.|++++|+. ++.+.. +.+. ...+.++++|+++.+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~~~-~~l~--~~~v~~v~~D~~d~~~l~~~~~-- 75 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAG-NPTYALVRKTITAANPETKEELI-DNYQ--SLGVILLEGDINDHETLVKAIK-- 75 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHT-CCEEEEECCSCCSSCHHHHHHHH-HHHH--HTTCEEEECCTTCHHHHHHHHT--
T ss_pred CcEEEEECCCchHHHHHHHHHHhCC-CcEEEEECCCcccCChHHHHHHH-HHHH--hCCCEEEEeCCCCHHHHHHHHh--
Confidence 4679999999999999999999999 5898999985 333332 2221 1357899999999998887765
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++|+||||+|... +.+...+++++. +.+. -.++| .|..+.. ..
T Consensus 76 -----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~----~~g~-v~~~v--~S~~g~~--~~--- 118 (307)
T 2gas_A 76 -----QVDIVICAAGRLL--------------------IEDQVKIIKAIK----EAGN-VKKFF--PSEFGLD--VD--- 118 (307)
T ss_dssp -----TCSEEEECSSSSC--------------------GGGHHHHHHHHH----HHCC-CSEEE--CSCCSSC--TT---
T ss_pred -----CCCEEEECCcccc--------------------cccHHHHHHHHH----hcCC-ceEEe--ecccccC--cc---
Confidence 6999999999642 223344444443 3220 14776 3433321 00
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
......+....| .+|.+++.+.+ + .|+.++.++||++.+... ....
T Consensus 119 ------------------------~~~~~~p~~~~y-~sK~~~e~~~~----~----~~i~~~~lrp~~~~~~~~-~~~~ 164 (307)
T 2gas_A 119 ------------------------RHDAVEPVRQVF-EEKASIRRVIE----A----EGVPYTYLCCHAFTGYFL-RNLA 164 (307)
T ss_dssp ------------------------SCCCCTTHHHHH-HHHHHHHHHHH----H----HTCCBEEEECCEETTTTG-GGTT
T ss_pred ------------------------cccCCCcchhHH-HHHHHHHHHHH----H----cCCCeEEEEcceeecccc-cccc
Confidence 000123456789 99999777664 2 278999999999987532 1111
Q ss_pred hhh-----hhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 278 PLF-----RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 278 ~~~-----~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
... ....... .......++.++|+|+.++.++.++.. .|+.+...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~ 215 (307)
T 2gas_A 165 QLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNT--LNKAVHIR 215 (307)
T ss_dssp CTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGG--TTEEEECC
T ss_pred ccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccc--cCceEEEe
Confidence 100 0000000 001123468999999999999987642 35544444
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.5e-15 Score=138.69 Aligned_cols=225 Identities=10% Similarity=0.036 Sum_probs=137.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC----cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga----~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++++|||||+|+||++++++|+++|. +.|++++|+..... ....++.++.+|+++.+++.++++.
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-------~~~~~~~~~~~Dl~d~~~~~~~~~~---- 69 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-------HEDNPINYVQCDISDPDDSQAKLSP---- 69 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-------CCSSCCEEEECCTTSHHHHHHHHTT----
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-------cccCceEEEEeecCCHHHHHHHHhc----
Confidence 46899999999999999999999992 38999999764322 1235788999999999887776652
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEE-------EEecCCCCCCCc
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLI-------IVGSITGNTNTL 193 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv-------~vsS~~~~~~~~ 193 (358)
.+++|+|||+||... ...+..+++|+.++..+++++.+.... ..++| ++||...+....
T Consensus 70 ~~~~d~vih~a~~~~----------~~~~~~~~~n~~~~~~l~~a~~~~~~~----~~~~v~~~g~~i~~Ss~~vyg~~~ 135 (364)
T 2v6g_A 70 LTDVTHVFYVTWANR----------STEQENCEANSKMFRNVLDAVIPNCPN----LKHISLQTGRKHYMGPFESYGKIE 135 (364)
T ss_dssp CTTCCEEEECCCCCC----------SSHHHHHHHHHHHHHHHHHHHTTTCTT----CCEEEEECCTHHHHCCGGGTTTSC
T ss_pred CCCCCEEEECCCCCc----------chHHHHHHHhHHHHHHHHHHHHHhccc----cceEEeccCceEEEechhhccccc
Confidence 224999999999752 235678899999999999988654211 14776 577765432100
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCC-chhhhhHHhHHHHHHHHHHHHHhhcccCC-cEEEEecCCcccCCc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDF-DGAKAYKDSKVCNMLTMQEFHRRFHEETG-IAFASLYPGCIATTG 271 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~al~~~~~~la~e~~~~~g-I~v~~v~PG~v~t~~ 271 (358)
+. ..+.++..+. +....|. +.+.+++.++.+ .| +.+++++||.+.++.
T Consensus 136 ----~~------------------~~~~~E~~~~~~~~~~y~----~~E~~~~~~~~~----~~~~~~~ilRp~~v~G~~ 185 (364)
T 2v6g_A 136 ----SH------------------DPPYTEDLPRLKYMNFYY----DLEDIMLEEVEK----KEGLTWSVHRPGNIFGFS 185 (364)
T ss_dssp ----CC------------------CSSBCTTSCCCSSCCHHH----HHHHHHHHHHTT----STTCEEEEEEESSEECCC
T ss_pred ----cC------------------CCCCCccccCCccchhhH----HHHHHHHHHhhc----CCCceEEEECCCceeCCC
Confidence 00 0011111111 1123452 233444444332 35 999999999999975
Q ss_pred ccccch---h--hhhhh-----cc-h-hH-H---hhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 272 LFREHI---P--LFRLL-----FP-P-FQ-K---YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 272 ~~~~~~---~--~~~~~-----~~-~-~~-~---~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...... + +...+ .. . .. . ........++|+|++++.++..+. ..|+.+...++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~--~~g~~~ni~~~ 254 (364)
T 2v6g_A 186 PYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPY--AKNEAFNVSNG 254 (364)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGG--GTTEEEEECCS
T ss_pred CCcccchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCC--CCCceEEecCC
Confidence 432111 0 01111 00 0 00 0 001124556889999999997653 25655555443
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=143.65 Aligned_cols=215 Identities=16% Similarity=0.078 Sum_probs=138.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++|||||+|+||+++++.|+++| +.|++++|+.... ..+.+|+.+. ..+.+.++
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G-~~V~~l~R~~~~~--------------~~v~~d~~~~---------~~~~l~~~ 202 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGG-HEVIQLVRKEPKP--------------GKRFWDPLNP---------ASDLLDGA 202 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESSSCCT--------------TCEECCTTSC---------CTTTTTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCc--------------cceeecccch---------hHHhcCCC
Confidence 6789999999999999999999999 6999999986431 1256777632 12334589
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+||..... ..+.+..+..+++|+.++..+++++. ...+ .+++|++||...+....
T Consensus 203 D~Vih~A~~~~~~----~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~~--~~r~V~~SS~~vyg~~~----------- 262 (516)
T 3oh8_A 203 DVLVHLAGEPIFG----RFNDSHKEAIRESRVLPTKFLAELVA---ESTQ--CTTMISASAVGFYGHDR----------- 262 (516)
T ss_dssp SEEEECCCC---------CCGGGHHHHHHHTHHHHHHHHHHHH---HCSS--CCEEEEEEEGGGGCSEE-----------
T ss_pred CEEEECCCCcccc----ccchhHHHHHHHHHHHHHHHHHHHHH---hcCC--CCEEEEeCcceEecCCC-----------
Confidence 9999999986332 34567788899999999999999754 2222 26999999977542000
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-hhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLL 283 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~~~~ 283 (358)
...+.++..+. +...|+.+|...+.+... . ...|+++++++||.+.++.. ..... ....
T Consensus 263 ------------~~~~~~E~~~~-~~~~y~~~~~~~E~~~~~----~-~~~gi~~~ilRp~~v~Gp~~--~~~~~~~~~~ 322 (516)
T 3oh8_A 263 ------------GDEILTEESES-GDDFLAEVCRDWEHATAP----A-SDAGKRVAFIRTGVALSGRG--GMLPLLKTLF 322 (516)
T ss_dssp ------------EEEEECTTSCC-CSSHHHHHHHHHHHTTHH----H-HHTTCEEEEEEECEEEBTTB--SHHHHHHHTT
T ss_pred ------------CCCccCCCCCC-CcChHHHHHHHHHHHHHH----H-HhCCCCEEEEEeeEEECCCC--ChHHHHHHHH
Confidence 00011122222 345688888775544332 2 34599999999999999752 11111 1111
Q ss_pred cchhH-----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 FPPFQ-----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 ~~~~~-----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
..... ......++.++|+|++++.++..+. .+|.|...++
T Consensus 323 ~~g~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~--~~g~~ni~~~ 367 (516)
T 3oh8_A 323 STGLGGKFGDGTSWFSWIAIDDLTDIYYRAIVDAQ--ISGPINAVAP 367 (516)
T ss_dssp C---CCCCTTSCCEECEEEHHHHHHHHHHHHHCTT--CCEEEEESCS
T ss_pred HhCCCcccCCCCceEceEeHHHHHHHHHHHHhCcc--cCCcEEEECC
Confidence 10000 0011246789999999999998764 3676655444
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.54 E-value=6.6e-14 Score=129.83 Aligned_cols=197 Identities=16% Similarity=0.139 Sum_probs=123.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++++||||||+||++++++|+++| +.|++++|+. .+.+.. +.+. ..++.++.+|+++.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~-~~~~--~~~~~~~~~D~~d~~~l~~~~~---- 75 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQML-LYFK--QLGAKLIEASLDDHQRLVDALK---- 75 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHH-HHHH--TTTCEEECCCSSCHHHHHHHHT----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CcEEEEECCCcccchhHHHHH-HHHH--hCCeEEEeCCCCCHHHHHHHHh----
Confidence 3579999999999999999999999 5899999983 232222 2221 2468899999999998887765
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+|||++|..... .|+.+...+++++. +.+. -.++|+ |..+....
T Consensus 76 ---~~d~vi~~a~~~~~~----------------~~~~~~~~l~~aa~----~~g~-v~~~v~--S~~g~~~~------- 122 (313)
T 1qyd_A 76 ---QVDVVISALAGGVLS----------------HHILEQLKLVEAIK----EAGN-IKRFLP--SEFGMDPD------- 122 (313)
T ss_dssp ---TCSEEEECCCCSSSS----------------TTTTTHHHHHHHHH----HSCC-CSEEEC--SCCSSCTT-------
T ss_pred ---CCCEEEECCccccch----------------hhHHHHHHHHHHHH----hcCC-CceEEe--cCCcCCcc-------
Confidence 699999999975321 15566666655553 3320 147774 33332100
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
.+ .....+....| .+|.+++.+.+ + .|+.++.++||++.+... ......
T Consensus 123 --~~-------------------~~~~~p~~~~y-~sK~~~e~~~~----~----~g~~~~ilrp~~~~~~~~-~~~~~~ 171 (313)
T 1qyd_A 123 --IM-------------------EHALQPGSITF-IDKRKVRRAIE----A----ASIPYTYVSSNMFAGYFA-GSLAQL 171 (313)
T ss_dssp --SC-------------------CCCCSSTTHHH-HHHHHHHHHHH----H----TTCCBCEEECCEEHHHHT-TTSSCT
T ss_pred --cc-------------------ccCCCCCcchH-HHHHHHHHHHH----h----cCCCeEEEEeceeccccc-cccccc
Confidence 00 00112335678 99999776654 2 378889999998865321 111000
Q ss_pred ------hhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 280 ------FRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 280 ------~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.......+ .......++.++|+|++++.++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~ 212 (313)
T 1qyd_A 172 DGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQ 212 (313)
T ss_dssp TCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGG
T ss_pred cccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcc
Confidence 00000000 00112346899999999999998764
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.4e-14 Score=131.07 Aligned_cols=202 Identities=10% Similarity=0.060 Sum_probs=124.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh------HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~------~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++||||+|+||++++++|+++| +.|++++|+. ...+.. +.+. ..++.++.+|+++.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~~~R~~~~~~~~~~~~~l-~~~~--~~~v~~v~~D~~d~~~l~~a~~--- 76 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFS-HPTFIYARPLTPDSTPSSVQLR-EEFR--SMGVTIIEGEMEEHEKMVSVLK--- 76 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECCCCTTCCHHHHHHH-HHHH--HTTCEEEECCTTCHHHHHHHHT---
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCC-CcEEEEECCcccccChHHHHHH-HHhh--cCCcEEEEecCCCHHHHHHHHc---
Confidence 4579999999999999999999999 5899999985 222222 2221 2468899999999998887776
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
.+|+||||+|... +.+...+++++ .+.+. -++|| .|..+.. .
T Consensus 77 ----~~d~vi~~a~~~~--------------------~~~~~~l~~aa----~~~g~-v~~~v--~S~~g~~--~----- 118 (321)
T 3c1o_A 77 ----QVDIVISALPFPM--------------------ISSQIHIINAI----KAAGN-IKRFL--PSDFGCE--E----- 118 (321)
T ss_dssp ----TCSEEEECCCGGG--------------------SGGGHHHHHHH----HHHCC-CCEEE--CSCCSSC--G-----
T ss_pred ----CCCEEEECCCccc--------------------hhhHHHHHHHH----HHhCC-ccEEe--ccccccC--c-----
Confidence 5999999998642 22334444444 33220 14776 3433321 0
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
. ......+....| .+|.+++.+++ +. |+.++.|+||++.+... .....
T Consensus 119 -----~-----------------~~~~~~p~~~~y-~sK~~~e~~~~----~~----~~~~~~lrp~~~~~~~~-~~~~~ 166 (321)
T 3c1o_A 119 -----D-----------------RIKPLPPFESVL-EKKRIIRRAIE----AA----ALPYTYVSANCFGAYFV-NYLLH 166 (321)
T ss_dssp -----G-----------------GCCCCHHHHHHH-HHHHHHHHHHH----HH----TCCBEEEECCEEHHHHH-HHHHC
T ss_pred -----c-----------------ccccCCCcchHH-HHHHHHHHHHH----Hc----CCCeEEEEeceeccccc-ccccc
Confidence 0 000122346689 99999877765 22 67888899998865321 11000
Q ss_pred h-----hhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 L-----FRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~-----~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. .......+ .......++.++|+|+.++.++.++.. .|+.+...+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~g~~~~~~g 217 (321)
T 3c1o_A 167 PSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRC--CNRIVIYRP 217 (321)
T ss_dssp CCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGG--TTEEEECCC
T ss_pred ccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccc--cCeEEEEeC
Confidence 0 00000000 001123468999999999999987643 355555443
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-13 Score=126.83 Aligned_cols=201 Identities=18% Similarity=0.185 Sum_probs=122.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH------HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL------KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~------~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++++||||||+||+++++.|+++| +.|++++|+.. +.+. .+.+. ..++.++++|+++.+++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~~~~~-~~~l~--~~~v~~v~~D~~d~~~l~~~~~--- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQL-LESFK--ASGANIVHGSIDDHASLVEAVK--- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHH-HHHHH--TTTCEEECCCTTCHHHHHHHHH---
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCC-CCEEEEECCcccccCHHHHHH-HHHHH--hCCCEEEEeccCCHHHHHHHHc---
Confidence 4679999999999999999999999 58999999742 2221 12222 2468899999999999888776
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++|+|||++|... +.+...+++++. +.+. -.++|+ |..+.. ..
T Consensus 77 ----~~d~vi~~a~~~~--------------------~~~~~~l~~aa~----~~g~-v~~~v~--S~~g~~--~~---- 119 (308)
T 1qyc_A 77 ----NVDVVISTVGSLQ--------------------IESQVNIIKAIK----EVGT-VKRFFP--SEFGND--VD---- 119 (308)
T ss_dssp ----TCSEEEECCCGGG--------------------SGGGHHHHHHHH----HHCC-CSEEEC--SCCSSC--TT----
T ss_pred ----CCCEEEECCcchh--------------------hhhHHHHHHHHH----hcCC-CceEee--cccccC--cc----
Confidence 5999999998641 223334444443 3220 147763 333210 00
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
......+....| .+|.+++.+.+. .|+.++.++||++.+... .....
T Consensus 120 -----------------------~~~~~~p~~~~y-~sK~~~e~~~~~--------~~~~~~~~r~~~~~~~~~-~~~~~ 166 (308)
T 1qyc_A 120 -----------------------NVHAVEPAKSVF-EVKAKVRRAIEA--------EGIPYTYVSSNCFAGYFL-RSLAQ 166 (308)
T ss_dssp -----------------------SCCCCTTHHHHH-HHHHHHHHHHHH--------HTCCBEEEECCEEHHHHT-TTTTC
T ss_pred -----------------------ccccCCcchhHH-HHHHHHHHHHHh--------cCCCeEEEEeceeccccc-ccccc
Confidence 000122446678 999997766652 267888899998865321 11100
Q ss_pred hh-----hhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 279 LF-----RLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 279 ~~-----~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
.. ....... .......++.++|+|+.++.++.++.. .|+.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~ 216 (308)
T 1qyc_A 167 AGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRT--LNKTLYLR 216 (308)
T ss_dssp TTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGG--TTEEEECC
T ss_pred ccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccc--cCeEEEEe
Confidence 00 0000000 001123467899999999999987542 34444443
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=127.85 Aligned_cols=200 Identities=15% Similarity=0.112 Sum_probs=121.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++|||||+|+||++++++|+++| +.|++++|+.. ..+.. +.+. ...+.++++|++|.+++.++++ .+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g-~~V~~l~R~~~~~~~~~-~~l~--~~~v~~v~~Dl~d~~~l~~a~~-------~~ 80 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLG-HPTYVFTRPNSSKTTLL-DEFQ--SLGAIIVKGELDEHEKLVELMK-------KV 80 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTT-CCEEEEECTTCSCHHHH-HHHH--HTTCEEEECCTTCHHHHHHHHT-------TC
T ss_pred CeEEEECCCchHHHHHHHHHHHCC-CcEEEEECCCCchhhHH-HHhh--cCCCEEEEecCCCHHHHHHHHc-------CC
Confidence 579999999999999999999999 58999999864 22221 2221 1357899999999998887775 59
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+++... +.+...+++++ ++.+. ..++|+ |..+.. ..
T Consensus 81 d~vi~~a~~~~--------------------~~~~~~l~~aa----~~~g~-v~~~v~--S~~g~~--~~---------- 121 (318)
T 2r6j_A 81 DVVISALAFPQ--------------------ILDQFKILEAI----KVAGN-IKRFLP--SDFGVE--ED---------- 121 (318)
T ss_dssp SEEEECCCGGG--------------------STTHHHHHHHH----HHHCC-CCEEEC--SCCSSC--TT----------
T ss_pred CEEEECCchhh--------------------hHHHHHHHHHH----HhcCC-CCEEEe--eccccC--cc----------
Confidence 99999998641 22333344444 33220 147763 333210 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh--hhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL--FRL 282 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~--~~~ 282 (358)
......+....| .+|.+++.+.+. .|+.++.++||++.+. ........ ...
T Consensus 122 -----------------~~~~~~p~~~~y-~sK~~~e~~~~~--------~~~~~~~lr~~~~~~~-~~~~~~~~~~~~~ 174 (318)
T 2r6j_A 122 -----------------RINALPPFEALI-ERKRMIRRAIEE--------ANIPYTYVSANCFASY-FINYLLRPYDPKD 174 (318)
T ss_dssp -----------------TCCCCHHHHHHH-HHHHHHHHHHHH--------TTCCBEEEECCEEHHH-HHHHHHCTTCCCS
T ss_pred -----------------cccCCCCcchhH-HHHHHHHHHHHh--------cCCCeEEEEcceehhh-hhhhhccccCCCC
Confidence 000112345678 999997766542 3788889999987553 11100000 000
Q ss_pred hcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 283 LFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 283 ~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
..... .......++.++|+++.++.++.++.. .|+.+...
T Consensus 175 ~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~--~~~~~~~~ 215 (318)
T 2r6j_A 175 EITVYGTGEAKFAMNYEQDIGLYTIKVATDPRA--LNRVVIYR 215 (318)
T ss_dssp EEEEETTSCCEEEEECHHHHHHHHHHHTTCGGG--TTEEEECC
T ss_pred ceEEecCCCceeeEeeHHHHHHHHHHHhcCccc--cCeEEEec
Confidence 00000 001123467899999999999987642 34444443
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-12 Score=118.21 Aligned_cols=214 Identities=11% Similarity=0.060 Sum_probs=128.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+||||||||.||++++++|+++| +.|+++.|++.. .++. .| . + ..+.+..+|.
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G-~~V~~l~R~~~~------------~~~~---~~-----~---~---~~~~l~~~d~ 54 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARG-HEVTLVSRKPGP------------GRIT---WD-----E---L---AASGLPSCDA 54 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCT------------TEEE---HH-----H---H---HHHCCCSCSE
T ss_pred EEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCc------------Ceee---cc-----h---h---hHhhccCCCE
Confidence 59999999999999999999999 699999997422 1221 11 1 1 1233568999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||.||.... ......+....+..++.|+.++..+.+++...-.+ ..++|+.||...+...
T Consensus 55 vihla~~~i~-~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~----~~~~i~~Ss~~vyg~~-------------- 115 (298)
T 4b4o_A 55 AVNLAGENIL-NPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQP----PKAWVLVTGVAYYQPS-------------- 115 (298)
T ss_dssp EEECCCCCSS-CTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSC----CSEEEEEEEGGGSCCC--------------
T ss_pred EEEeccCccc-chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCC----ceEEEEEeeeeeecCC--------------
Confidence 9999986422 12223466777788889998888777766433222 2467777777655311
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh---
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL--- 283 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~--- 283 (358)
.....++..+......|+..|...+. +... ...++++..++||.|.++.- .....+....
T Consensus 116 ----------~~~~~~E~~p~~~~~~~~~~~~~~e~-----~~~~-~~~~~~~~~~r~~~v~g~~~-~~~~~~~~~~~~~ 178 (298)
T 4b4o_A 116 ----------LTAEYDEDSPGGDFDFFSNLVTKWEA-----AARL-PGDSTRQVVVRSGVVLGRGG-GAMGHMLLPFRLG 178 (298)
T ss_dssp ----------SSCCBCTTCCCSCSSHHHHHHHHHHH-----HHCC-SSSSSEEEEEEECEEECTTS-HHHHHHHHHHHTT
T ss_pred ----------CCCcccccCCccccchhHHHHHHHHH-----HHHh-hccCCceeeeeeeeEEcCCC-CchhHHHHHHhcC
Confidence 01112233344444445555544221 1222 56799999999999998742 1111110000
Q ss_pred c--chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 284 F--PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 284 ~--~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
. ..........++..+|+++++..++.++.. +|.|-..++
T Consensus 179 ~~~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~--~g~yn~~~~ 220 (298)
T 4b4o_A 179 LGGPIGSGHQFFPWIHIGDLAGILTHALEANHV--HGVLNGVAP 220 (298)
T ss_dssp CCCCBTTSCSBCCEEEHHHHHHHHHHHHHCTTC--CEEEEESCS
T ss_pred CcceecccCceeecCcHHHHHHHHHHHHhCCCC--CCeEEEECC
Confidence 0 000001112357899999999999987753 776654443
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=8e-13 Score=121.71 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=83.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|++|||||+||||++++..|+++|+ .|++++|+.++++...+++... .++.++.+|+++.+++.++++
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~-~~~~~~~~D~~~~~~~~~~~~----- 187 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAVK----- 187 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHTT-----
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhc-CCcEEEEecCCCHHHHHHHHH-----
Confidence 457899999999999999999999999996 7999999987777776665432 246778899999988777655
Q ss_pred CCCccEEEEcccccCCCCCCCCCCH-HhHHhhhhhhhhHHH
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTA-EGFELSVGTNHLGHF 160 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~-~~~~~~~~vN~~~~~ 160 (358)
.+|+||||+|......+..+.+. +.++..+++|+.+++
T Consensus 188 --~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 --GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp --TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred --hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 58999999986422111112232 555667788887765
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-10 Score=105.12 Aligned_cols=173 Identities=10% Similarity=0.055 Sum_probs=109.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecCh--HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~--~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++||||+|.||.+++..|+.+|. ..|+++++.. ...+.....+... .+.++ .|+.+.+++.+.+
T Consensus 6 kVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--~~~~~-~di~~~~~~~~a~---- 78 (327)
T 1y7t_A 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--AFPLL-AGLEATDDPKVAF---- 78 (327)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--TCTTE-EEEEEESCHHHHT----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--ccccc-CCeEeccChHHHh----
Confidence 699999999999999999999883 2799999864 2222222233221 11222 4665544443333
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
...|+|||+||..... ..+ ....+++|+.++..+++++..+- . ++.+++++|+..........
T Consensus 79 ---~~~D~Vih~Ag~~~~~----~~~---~~~~~~~Nv~~t~~l~~a~~~~~-~---~~~~vvv~snp~~~~~~~~~--- 141 (327)
T 1y7t_A 79 ---KDADYALLVGAAPRKA----GME---RRDLLQVNGKIFTEQGRALAEVA-K---KDVKVLVVGNPANTNALIAY--- 141 (327)
T ss_dssp ---TTCSEEEECCCCCCCT----TCC---HHHHHHHHHHHHHHHHHHHHHHS-C---TTCEEEECSSSHHHHHHHHH---
T ss_pred ---CCCCEEEECCCcCCCC----CCC---HHHHHHHHHHHHHHHHHHHHhhc-C---CCeEEEEeCCchhhhHHHHH---
Confidence 3689999999975321 122 34578899999999999987763 0 12588888775421100000
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
....++++...|+.+|..-+.+.+.+++.+ |+.+..|+|..|.++
T Consensus 142 -----------------------~~~~~~~p~~~yg~tkl~~er~~~~~a~~~----g~~~~~vr~~~V~G~ 186 (327)
T 1y7t_A 142 -----------------------KNAPGLNPRNFTAMTRLDHNRAKAQLAKKT----GTGVDRIRRMTVWGN 186 (327)
T ss_dssp -----------------------HTCTTSCGGGEEECCHHHHHHHHHHHHHHH----TCCGGGEECCEEEBC
T ss_pred -----------------------HHcCCCChhheeccchHHHHHHHHHHHHHh----CcChhheeeeEEEcC
Confidence 000123455679999999888888888776 555555555555444
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=4.2e-09 Score=92.73 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=60.2
Q ss_pred cCCCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC
Q 018331 42 TLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105 (358)
Q Consensus 42 ~l~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~ 105 (358)
+|+||++||||| |||+|+++|+.|+++|+ .|++++++.. + .. ...+ -.+|++
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga-~V~l~~~~~~-l-------~~-~~g~--~~~dv~ 72 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVS-L-------PT-PPFV--KRVDVM 72 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCC-C-------CC-CTTE--EEEECC
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCC-EEEEEECCcc-c-------cc-CCCC--eEEccC
Confidence 689999999999 69999999999999996 8888877641 1 10 1122 357888
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
+.++ +++.+.+.++++|++|||||...
T Consensus 73 ~~~~---~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 73 TALE---MEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp SHHH---HHHHHHHHGGGCSEEEECCBCCS
T ss_pred cHHH---HHHHHHHhcCCCCEEEECCcccC
Confidence 7655 55566666789999999999763
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.8e-08 Score=77.04 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=62.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+++++|+|+ |++|+++++.|+++|.+.|++++|+++..+... ...+.++.+|+++.+++.++++ +
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~-------~ 69 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN------RMGVATKQVDAKDEAGLAKALG-------G 69 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH------TTTCEEEECCTTCHHHHHHHTT-------T
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH------hCCCcEEEecCCCHHHHHHHHc-------C
Confidence 3568999999 999999999999999558999999987766543 2356788999999887776653 7
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+||++++.
T Consensus 70 ~d~vi~~~~~ 79 (118)
T 3ic5_A 70 FDAVISAAPF 79 (118)
T ss_dssp CSEEEECSCG
T ss_pred CCEEEECCCc
Confidence 9999999963
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-08 Score=88.76 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=56.6
Q ss_pred CCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCH
Q 018331 44 RKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107 (358)
Q Consensus 44 ~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~ 107 (358)
+||++||||| ||++|+++|+.|+++|+ .|++++|+... .. .....+. ..|+.+
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga-~V~lv~~~~~~-~~------~~~~~~~--~~~v~s- 70 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGY-EVCLITTKRAL-KP------EPHPNLS--IREITN- 70 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTC-EEEEEECTTSC-CC------CCCTTEE--EEECCS-
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCC-EEEEEeCCccc-cc------cCCCCeE--EEEHhH-
Confidence 5899999999 88899999999999996 89999886421 00 0012232 345554
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
+.++++.+.+.++++|++|+|||...
T Consensus 71 --~~em~~~v~~~~~~~Dili~aAAvsD 96 (232)
T 2gk4_A 71 --TKDLLIEMQERVQDYQVLIHSMAVSD 96 (232)
T ss_dssp --HHHHHHHHHHHGGGCSEEEECSBCCS
T ss_pred --HHHHHHHHHHhcCCCCEEEEcCcccc
Confidence 45556666666778999999999763
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.51 E-value=5.5e-07 Score=86.62 Aligned_cols=83 Identities=23% Similarity=0.333 Sum_probs=70.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC--cEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga--~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++++|+|| |+||+++++.|+++|. ..|++++|+.++++...+.+... +.++..+.+|+++.+++.++++..
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----- 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----- 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-----
Confidence 47999999 8999999999999984 38999999998888877776532 246889999999999999998865
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
++|+||||+|..
T Consensus 76 ~~DvVin~ag~~ 87 (405)
T 4ina_A 76 KPQIVLNIALPY 87 (405)
T ss_dssp CCSEEEECSCGG
T ss_pred CCCEEEECCCcc
Confidence 589999999853
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.1e-08 Score=79.74 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=61.2
Q ss_pred chHHHHHHHHHhCCCcEEEEEecChHHHH---HHHHHhcCCCCceEEEEecCCCH--HHHHHHHHHHHhcCCCccEEEEc
Q 018331 56 GLGLATAKALAETGKWHIIMACRDFLKAE---RAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTFRRSGRPLDVLVCN 130 (358)
Q Consensus 56 gIG~aia~~La~~Ga~~Vi~~~r~~~~~~---~~~~~~~~~~~~i~~~~~Dl~~~--~~i~~~~~~~~~~~~~iD~lv~~ 130 (358)
-++.++++.|++.|+ +|++..|+..... ...+.+...+.+...+.+|+++. ++++++++.+.+.+|+ |+||||
T Consensus 27 ~p~~a~a~~La~~Ga-~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVnn 104 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGV-DVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVHC 104 (157)
T ss_dssp CCCHHHHHHHHHTTC-CEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEEC
T ss_pred CCCHHHHHHHHHcCC-CEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEC
Confidence 478999999999996 7777777654321 12334444466788889999999 9999999999998889 999999
Q ss_pred cccc
Q 018331 131 AAVY 134 (358)
Q Consensus 131 ag~~ 134 (358)
||+.
T Consensus 105 Agg~ 108 (157)
T 3gxh_A 105 LANY 108 (157)
T ss_dssp SBSH
T ss_pred CCCC
Confidence 9974
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-07 Score=93.63 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=67.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|||| ||+|++++..|++.|+ +|++++|+.++++...+.+. .++. ++.+ +.++ ..
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~-~V~i~~R~~~~a~~la~~~~---~~~~----~~~d---l~~~------~~ 422 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGA-KVVIANRTYERALELAEAIG---GKAL----SLTD---LDNY------HP 422 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC--CEEEESSHHHHHHHHHHTT---C-CE----ETTT---TTTC--------
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---Ccee----eHHH---hhhc------cc
Confidence 578999999999 5999999999999997 89999999888877776663 2221 2222 1000 12
Q ss_pred CCccEEEEcccccCCC----CCCCCCCHHhHHhhhhhhhhHHH
Q 018331 122 RPLDVLVCNAAVYLPT----AKEPTFTAEGFELSVGTNHLGHF 160 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~----~~~~~~~~~~~~~~~~vN~~~~~ 160 (358)
+.+|+||||+|....+ .++.+.+.+.|...+++|+.+..
T Consensus 423 ~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~ 465 (523)
T 2o7s_A 423 EDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 465 (523)
T ss_dssp CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred cCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc
Confidence 3589999999974221 23445667788899999998653
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=6e-07 Score=83.84 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++|||||+||||.++++.+...|+ +|++++|++++.+.+ +++. .. ..+|.++.+++.+.+.++.. ++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~-~~~g---~~---~~~d~~~~~~~~~~~~~~~~--~~ 214 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYL-KQIG---FD---AAFNYKTVNSLEEALKKASP--DG 214 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHTT---CS---EEEETTSCSCHHHHHHHHCT--TC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HhcC---Cc---EEEecCCHHHHHHHHHHHhC--CC
Confidence 589999999999999999999999997 999999998777665 4442 22 23577764455555555433 57
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|+|+|
T Consensus 215 ~d~vi~~~g 223 (333)
T 1v3u_A 215 YDCYFDNVG 223 (333)
T ss_dssp EEEEEESSC
T ss_pred CeEEEECCC
Confidence 999999998
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-07 Score=84.99 Aligned_cols=109 Identities=19% Similarity=0.201 Sum_probs=75.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.+++++++|+|+ |+||+++++.+...|+ +|++++|+..+++...+.+. .. +.+|.++.+++.+++.
T Consensus 162 ~~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g---~~---~~~~~~~~~~l~~~~~----- 228 (369)
T 2eez_A 162 PGVAPASVVILGG-GTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFG---GR---VITLTATEANIKKSVQ----- 228 (369)
T ss_dssp TBBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTT---TS---EEEEECCHHHHHHHHH-----
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcC---ce---EEEecCCHHHHHHHHh-----
Confidence 3688999999999 9999999999999997 99999999877766554442 22 4577888877766654
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
..|+||+|+|...... +..+.+..++.|++ +++||++++..+
T Consensus 229 --~~DvVi~~~g~~~~~~--------------------~~li~~~~l~~mk~----gg~iV~v~~~~g 270 (369)
T 2eez_A 229 --HADLLIGAVLVPGAKA--------------------PKLVTRDMLSLMKE----GAVIVDVAVDQG 270 (369)
T ss_dssp --HCSEEEECCC---------------------------CCSCHHHHTTSCT----TCEEEECC----
T ss_pred --CCCEEEECCCCCcccc--------------------chhHHHHHHHhhcC----CCEEEEEecCCC
Confidence 5899999998642110 01233455556643 479999988654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.39 E-value=7.5e-07 Score=86.79 Aligned_cols=78 Identities=21% Similarity=0.295 Sum_probs=61.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++|+++|+| +|++|++++..|++.|+ .|++++|+.++++...+.+ ..+..+.+|+++.+++.++++ +
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~----~~~~~~~~Dv~d~~~l~~~l~-------~ 68 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA-------K 68 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTC----TTEEEEECCTTCHHHHHHHHT-------T
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhc----CCceEEEeecCCHHHHHHHHc-------C
Confidence 578899997 89999999999999994 8999999976655443222 246788899999988777654 6
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|+||||++..
T Consensus 69 ~DvVIn~a~~~ 79 (450)
T 1ff9_A 69 HDLVISLIPYT 79 (450)
T ss_dssp SSEEEECCC--
T ss_pred CcEEEECCccc
Confidence 99999999864
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=9.1e-07 Score=76.12 Aligned_cols=79 Identities=22% Similarity=0.231 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++|||||+||||.++++.+...|+ +|++++|++++.+... .+ +.. ..+|.++.+..+.+.+... .++
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~-~~---g~~---~~~d~~~~~~~~~~~~~~~--~~~ 107 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS-RL---GVE---YVGDSRSVDFADEILELTD--GYG 107 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-TT---CCS---EEEETTCSTHHHHHHHHTT--TCC
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-Hc---CCC---EEeeCCcHHHHHHHHHHhC--CCC
Confidence 578999999999999999999999996 8999999876655442 22 222 1257776554444333221 236
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|+|+|
T Consensus 108 ~D~vi~~~g 116 (198)
T 1pqw_A 108 VDVVLNSLA 116 (198)
T ss_dssp EEEEEECCC
T ss_pred CeEEEECCc
Confidence 999999997
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.5e-09 Score=101.08 Aligned_cols=45 Identities=22% Similarity=0.306 Sum_probs=39.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
.+.||+++|||++ +||+++|+.|+..|+ +|+++++++..+.....
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~ 306 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGA-RVIVTEIDPICALQATM 306 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 4899999999987 999999999999997 99999999766555443
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-06 Score=78.36 Aligned_cols=84 Identities=17% Similarity=0.221 Sum_probs=64.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC---hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~---~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.++++|+++|+|+ ||+|++++..|++.|+..|+++.|+ .++++...+++..... +.+...++.+.+++.+.+.
T Consensus 150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~-~~~~~~~~~~~~~l~~~l~-- 225 (315)
T 3tnl_A 150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD-CKAQLFDIEDHEQLRKEIA-- 225 (315)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS-CEEEEEETTCHHHHHHHHH--
T ss_pred CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC-CceEEeccchHHHHHhhhc--
Confidence 4688999999997 7999999999999997689999999 7777777766643221 3344557777666555444
Q ss_pred HhcCCCccEEEEcccc
Q 018331 118 RRSGRPLDVLVCNAAV 133 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~ 133 (358)
..|+|||+...
T Consensus 226 -----~aDiIINaTp~ 236 (315)
T 3tnl_A 226 -----ESVIFTNATGV 236 (315)
T ss_dssp -----TCSEEEECSST
T ss_pred -----CCCEEEECccC
Confidence 68999999764
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.30 E-value=2.5e-07 Score=84.85 Aligned_cols=81 Identities=23% Similarity=0.279 Sum_probs=59.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|||++ |+|++++..|++.| +|++++|+.++++...+.+.........+.+|+.+. .+.+
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G--~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~----------~~~~ 191 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN--NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL----------DVDL 191 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT----------TCCC
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH----------HHhh
Confidence 5789999999997 99999999999999 899999998877777665532110000123444441 3456
Q ss_pred CCccEEEEcccccC
Q 018331 122 RPLDVLVCNAAVYL 135 (358)
Q Consensus 122 ~~iD~lv~~ag~~~ 135 (358)
+++|+||||+|...
T Consensus 192 ~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 192 DGVDIIINATPIGM 205 (287)
T ss_dssp TTCCEEEECSCTTC
T ss_pred CCCCEEEECCCCCC
Confidence 78999999999753
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.9e-06 Score=82.94 Aligned_cols=81 Identities=17% Similarity=0.258 Sum_probs=63.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++++++|+|+ |++|++++..|++.|...|++++|+.++++...+. ..+..+.+|+.+.+++.++++
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~-----~~~~~~~~D~~d~~~l~~~l~----- 87 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP-----SGSKAISLDVTDDSALDKVLA----- 87 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG-----GTCEEEECCTTCHHHHHHHHH-----
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh-----cCCcEEEEecCCHHHHHHHHc-----
Confidence 4678899999997 99999999999998335899999998777665433 235677899999988777665
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
++|+||||++..
T Consensus 88 --~~DvVIn~tp~~ 99 (467)
T 2axq_A 88 --DNDVVISLIPYT 99 (467)
T ss_dssp --TSSEEEECSCGG
T ss_pred --CCCEEEECCchh
Confidence 689999999864
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.8e-06 Score=77.59 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=60.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|++++|++++.+.+. .+. .. ..+|.++.+++.+.+.++... +
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~-~~g---~~---~~~d~~~~~~~~~~~~~~~~~--~ 238 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFR-SIG---GE---VFIDFTKEKDIVGAVLKATDG--G 238 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHH-HTT---CC---EEEETTTCSCHHHHHHHHHTS--C
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHH-HcC---Cc---eEEecCccHhHHHHHHHHhCC--C
Confidence 588999999999999999999999996 9999999877665443 332 22 224877555666666655443 7
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 239 ~D~vi~~~g~ 248 (347)
T 2hcy_A 239 AHGVINVSVS 248 (347)
T ss_dssp EEEEEECSSC
T ss_pred CCEEEECCCc
Confidence 9999999984
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=4e-06 Score=78.55 Aligned_cols=81 Identities=11% Similarity=0.093 Sum_probs=59.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|++++|++++.+.+.+++. .. ..+|.++.+++.+.+.++.. ++
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~g---~~---~~~d~~~~~~~~~~~~~~~~--~~ 225 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKFG---FD---DAFNYKEESDLTAALKRCFP--NG 225 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTSC---CS---EEEETTSCSCSHHHHHHHCT--TC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC---Cc---eEEecCCHHHHHHHHHHHhC--CC
Confidence 589999999999999999999999997 99999999877766543442 22 12466654444444544432 47
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 226 ~d~vi~~~g~ 235 (345)
T 2j3h_A 226 IDIYFENVGG 235 (345)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCH
Confidence 9999999983
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.3e-05 Score=64.91 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+++++++|+|+ |.+|+++++.|.++| +.|++++++++..+...+ ....++.+|.++.+.+.++ ...
T Consensus 4 ~~~~~v~I~G~-G~iG~~la~~L~~~g-~~V~~id~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~------~~~ 69 (141)
T 3llv_A 4 NGRYEYIVIGS-EAAGVGLVRELTAAG-KKVLAVDKSKEKIELLED------EGFDAVIADPTDESFYRSL------DLE 69 (141)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH------TTCEEEECCTTCHHHHHHS------CCT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHH------CCCcEEECCCCCHHHHHhC------Ccc
Confidence 34568999998 889999999999999 599999999877665543 2367888999999876553 234
Q ss_pred CccEEEEccc
Q 018331 123 PLDVLVCNAA 132 (358)
Q Consensus 123 ~iD~lv~~ag 132 (358)
+.|+||.+.+
T Consensus 70 ~~d~vi~~~~ 79 (141)
T 3llv_A 70 GVSAVLITGS 79 (141)
T ss_dssp TCSEEEECCS
T ss_pred cCCEEEEecC
Confidence 7899998776
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.12 E-value=7e-06 Score=74.46 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=57.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|+|+ ||+|++++..|++.| .+|++++|+.++++...+.+...+ .+. ..|+ +++ .+
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G-~~V~v~~R~~~~~~~la~~~~~~~-~~~--~~~~---~~~-------~~-- 178 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLD-CAVTITNRTVSRAEELAKLFAHTG-SIQ--ALSM---DEL-------EG-- 178 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHHTGGGS-SEE--ECCS---GGG-------TT--
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHhhccC-Cee--EecH---HHh-------cc--
Confidence 578999999998 799999999999999 599999999888877777664322 221 2332 211 11
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
+++|+||||+|..
T Consensus 179 ~~~DivVn~t~~~ 191 (271)
T 1nyt_A 179 HEFDLIINATSSG 191 (271)
T ss_dssp CCCSEEEECCSCG
T ss_pred CCCCEEEECCCCC
Confidence 5899999999875
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.10 E-value=9.8e-06 Score=75.56 Aligned_cols=80 Identities=21% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++|||||+|+||.++++.+...|+ +|++++|++++.+.+.+ +. .. ..+|.++.+..+.+.+.. . .++
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~-~g---~~---~~~d~~~~~~~~~i~~~~-~-~~~ 214 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARK-LG---CH---HTINYSTQDFAEVVREIT-G-GKG 214 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-HT---CS---EEEETTTSCHHHHHHHHH-T-TCC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC---CC---EEEECCCHHHHHHHHHHh-C-CCC
Confidence 588999999999999999999999996 99999999877665543 32 22 224766654444433322 1 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 215 ~d~vi~~~g~ 224 (333)
T 1wly_A 215 VDVVYDSIGK 224 (333)
T ss_dssp EEEEEECSCT
T ss_pred CeEEEECCcH
Confidence 9999999984
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-06 Score=76.62 Aligned_cols=160 Identities=8% Similarity=-0.030 Sum_probs=98.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecC----hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGK------WHIIMACRD----FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~----~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
.+++||||+|.||.+++..|+..|. ..|++++++ .++++.....+....... ..|+....+..+.+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~---~~~i~~~~~~~~al- 81 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL---LAGMTAHADPMTAF- 81 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT---EEEEEEESSHHHHT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc---cCcEEEecCcHHHh-
Confidence 4799999999999999999999884 279999998 544544444443311111 12443333333333
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
...|+||++||..... ..+. ...+..|+.....+++.+..+-. ++++||++|...........
T Consensus 82 ------~~aD~Vi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~~----p~a~ii~~SNPv~~~t~~~~ 144 (329)
T 1b8p_A 82 ------KDADVALLVGARPRGP----GMER---KDLLEANAQIFTVQGKAIDAVAS----RNIKVLVVGNPANTNAYIAM 144 (329)
T ss_dssp ------TTCSEEEECCCCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHSC----TTCEEEECSSSHHHHHHHHH
T ss_pred ------CCCCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHhcC----CCeEEEEccCchHHHHHHHH
Confidence 3789999999975321 2233 34577888888888888876631 13699999876532211000
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH 252 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~ 252 (358)
. ...+++....|+.++.--..+...+++.++
T Consensus 145 ~--------------------------~~~~~p~~~v~g~t~Ld~~r~~~~la~~lg 175 (329)
T 1b8p_A 145 K--------------------------SAPSLPAKNFTAMLRLDHNRALSQIAAKTG 175 (329)
T ss_dssp H--------------------------TCTTSCGGGEEECCHHHHHHHHHHHHHHHT
T ss_pred H--------------------------HcCCCCHHHEEEeecHHHHHHHHHHHHHhC
Confidence 0 001333444577777766667777777763
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=8.2e-06 Score=76.84 Aligned_cols=80 Identities=13% Similarity=0.126 Sum_probs=57.6
Q ss_pred CC--CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RK--GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~--k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.| +++|||||+||||.++++.+...|+.+|+++++++++.+.+.+++. .. ..+|.++.+. .+.+.+...
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g---~~---~~~d~~~~~~-~~~~~~~~~-- 228 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG---FD---AAINYKKDNV-AEQLRESCP-- 228 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC---CS---EEEETTTSCH-HHHHHHHCT--
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---Cc---eEEecCchHH-HHHHHHhcC--
Confidence 46 8999999999999999999999995489999999877666654443 12 2357665432 222333222
Q ss_pred CCccEEEEccc
Q 018331 122 RPLDVLVCNAA 132 (358)
Q Consensus 122 ~~iD~lv~~ag 132 (358)
+++|++|+|+|
T Consensus 229 ~~~d~vi~~~G 239 (357)
T 2zb4_A 229 AGVDVYFDNVG 239 (357)
T ss_dssp TCEEEEEESCC
T ss_pred CCCCEEEECCC
Confidence 26999999998
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=7.7e-06 Score=76.01 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=57.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++|||||+||||.++++.+...|+ +|++++|++++.+.+.+ +. .. ..+|.++.+..+.+.+... .++
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~-~g---~~---~~~~~~~~~~~~~~~~~~~--~~~ 209 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK-AG---AW---QVINYREEDLVERLKEITG--GKK 209 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH-HT---CS---EEEETTTSCHHHHHHHHTT--TCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH-cC---CC---EEEECCCccHHHHHHHHhC--CCC
Confidence 588999999999999999999999996 99999999877665543 32 22 2246666554444333221 236
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|+|+|
T Consensus 210 ~D~vi~~~g 218 (327)
T 1qor_A 210 VRVVYDSVG 218 (327)
T ss_dssp EEEEEECSC
T ss_pred ceEEEECCc
Confidence 999999998
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-06 Score=67.76 Aligned_cols=78 Identities=9% Similarity=0.123 Sum_probs=56.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++|+|+ |++|+.+++.|.+.| ..|++++|+++..+.. ... ...++.+|.++.+.+.++ ..
T Consensus 3 ~~~~~~v~I~G~-G~iG~~~a~~l~~~g-~~v~~~d~~~~~~~~~----~~~--~~~~~~~d~~~~~~l~~~------~~ 68 (144)
T 2hmt_A 3 RIKNKQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINEEKVNAY----ASY--ATHAVIANATEENELLSL------GI 68 (144)
T ss_dssp ---CCSEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCHHHHHTT----TTT--CSEEEECCTTCHHHHHTT------TG
T ss_pred CCcCCcEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHH----HHh--CCEEEEeCCCCHHHHHhc------CC
Confidence 456778999998 999999999999999 4899999987554332 211 235677899887655432 12
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
++.|+||++++.
T Consensus 69 ~~~d~vi~~~~~ 80 (144)
T 2hmt_A 69 RNFEYVIVAIGA 80 (144)
T ss_dssp GGCSEEEECCCS
T ss_pred CCCCEEEECCCC
Confidence 468999999874
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=8.6e-06 Score=76.01 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|++++|++++.+.+.+++. .. ...|..+.+..+. +.+.. .++
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~g---~~---~~~~~~~~~~~~~-~~~~~--~~~ 218 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEELG---FD---GAIDYKNEDLAAG-LKREC--PKG 218 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC---CS---EEEETTTSCHHHH-HHHHC--TTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcC---CC---EEEECCCHHHHHH-HHHhc--CCC
Confidence 588999999999999999999999997 99999999877776645543 22 1246655443333 22222 347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 219 ~d~vi~~~g~ 228 (336)
T 4b7c_A 219 IDVFFDNVGG 228 (336)
T ss_dssp EEEEEESSCH
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.05 E-value=9.7e-06 Score=73.98 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=60.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|+|+ ||+|++++..|++.|+.+|++++|+.++++...+.+......+.+...+..+. .+.+.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l---~~~l~------ 193 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGI---EDVIA------ 193 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTH---HHHHH------
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHH---HHHHh------
Confidence 688999999998 89999999999999976899999999888877777654322333334454443 23333
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
..|+|||+...
T Consensus 194 -~~DiVInaTp~ 204 (283)
T 3jyo_A 194 -AADGVVNATPM 204 (283)
T ss_dssp -HSSEEEECSST
T ss_pred -cCCEEEECCCC
Confidence 47999999864
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-05 Score=75.60 Aligned_cols=80 Identities=16% Similarity=0.205 Sum_probs=58.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+||||.++++.+...|+ +|++++|++++.+.+ +.+. .. ..+|..+.+..+.+.+ ... .++
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~g---~~---~~~~~~~~~~~~~~~~-~~~-~~~ 231 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMA-EKLG---AA---AGFNYKKEDFSEATLK-FTK-GAG 231 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHHT---CS---EEEETTTSCHHHHHHH-HTT-TSC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HHcC---Cc---EEEecCChHHHHHHHH-Hhc-CCC
Confidence 588999999999999999999999997 999999998777665 3442 22 2356665443333322 211 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 232 ~d~vi~~~G~ 241 (354)
T 2j8z_A 232 VNLILDCIGG 241 (354)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCc
Confidence 9999999984
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.8e-05 Score=74.44 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=57.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+||||.++++.+...|+ +|++++|++++.+.+ +.+. .. ..+|..+.+..+.+.+.. ..++
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~g---a~---~~~d~~~~~~~~~~~~~~--~~~~ 239 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIV-LQNG---AH---EVFNHREVNYIDKIKKYV--GEKG 239 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHTT---CS---EEEETTSTTHHHHHHHHH--CTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHH-HHcC---CC---EEEeCCCchHHHHHHHHc--CCCC
Confidence 588999999999999999999999996 899999998776643 3332 22 225666654433332221 1237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 240 ~D~vi~~~G~ 249 (351)
T 1yb5_A 240 IDIIIEMLAN 249 (351)
T ss_dssp EEEEEESCHH
T ss_pred cEEEEECCCh
Confidence 9999999984
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-05 Score=70.92 Aligned_cols=84 Identities=24% Similarity=0.264 Sum_probs=61.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC---hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~---~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.++++|++||+|+ ||.|++++..|++.|+..|.++.|+ .++++...+++.... ...+...+..+.+...+.+.
T Consensus 144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~-~~~v~~~~~~~l~~~~~~l~-- 219 (312)
T 3t4e_A 144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENT-DCVVTVTDLADQHAFTEALA-- 219 (312)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHS-SCEEEEEETTCHHHHHHHHH--
T ss_pred CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhcc-CcceEEechHhhhhhHhhcc--
Confidence 4678999999997 8999999999999997789999999 777777766664321 12333456666533333333
Q ss_pred HhcCCCccEEEEcccc
Q 018331 118 RRSGRPLDVLVCNAAV 133 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~ 133 (358)
..|+|||+...
T Consensus 220 -----~~DiIINaTp~ 230 (312)
T 3t4e_A 220 -----SADILTNGTKV 230 (312)
T ss_dssp -----HCSEEEECSST
T ss_pred -----CceEEEECCcC
Confidence 47999999765
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.6e-05 Score=71.43 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=56.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.|+++|||||+|+||..+++.+... |+ +|+++++++++.+.+. ++. .. . .+|.++.+..+. +.++... +
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~-~~g---~~-~--~~~~~~~~~~~~-~~~~~~~-~ 239 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAK-RAG---AD-Y--VINASMQDPLAE-IRRITES-K 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHH-HHT---CS-E--EEETTTSCHHHH-HHHHTTT-S
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHH-HhC---CC-E--EecCCCccHHHH-HHHHhcC-C
Confidence 5889999999999999999999999 96 8999999987766553 332 22 1 246655433222 2222221 4
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|+|+|.
T Consensus 240 ~~d~vi~~~g~ 250 (347)
T 1jvb_A 240 GVDAVIDLNNS 250 (347)
T ss_dssp CEEEEEESCCC
T ss_pred CceEEEECCCC
Confidence 79999999985
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.7e-05 Score=72.65 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=54.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++|+++||+|| |+||..+++.+...|+ +|+++++++ ++.+.+ +.+. ...+ | .+ ++.+.+.+ .
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~-~~~g-----a~~v--~-~~--~~~~~~~~-~ 243 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVI-EETK-----TNYY--N-SS--NGYDKLKD-S 243 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHH-HHHT-----CEEE--E-CT--TCSHHHHH-H
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHH-HHhC-----Ccee--c-hH--HHHHHHHH-h
Confidence 355999999999 9999999999999997 999999987 665443 3332 2233 5 54 22222232 2
Q ss_pred hcCCCccEEEEcccc
Q 018331 119 RSGRPLDVLVCNAAV 133 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~ 133 (358)
. +++|++|+++|.
T Consensus 244 ~--~~~d~vid~~g~ 256 (366)
T 2cdc_A 244 V--GKFDVIIDATGA 256 (366)
T ss_dssp H--CCEEEEEECCCC
T ss_pred C--CCCCEEEECCCC
Confidence 2 579999999985
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00019 Score=66.74 Aligned_cols=119 Identities=11% Similarity=-0.005 Sum_probs=73.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+++||||+|.+|..++..|+.+|. ..|+++++++. +....++........+ .. +...++..++++ ..
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v-~~-~~~t~d~~~al~-------ga 77 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVV-RG-FLGQQQLEAALT-------GM 77 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEE-EE-EESHHHHHHHHT-------TC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceE-EE-EeCCCCHHHHcC-------CC
Confidence 3699999999999999999999882 37888998765 2222223221111111 11 223444444433 68
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
|+||+++|..... ..+. ...+.+|+.+...+.+.+..+-. ++.|+++|...
T Consensus 78 DvVi~~ag~~~~~----g~~r---~dl~~~N~~~~~~i~~~i~~~~p-----~~~viv~SNPv 128 (326)
T 1smk_A 78 DLIIVPAGVPRKP----GMTR---DDLFKINAGIVKTLCEGIAKCCP-----RAIVNLISNPV 128 (326)
T ss_dssp SEEEECCCCCCCS----SCCC---SHHHHHHHHHHHHHHHHHHHHCT-----TSEEEECCSSH
T ss_pred CEEEEcCCcCCCC----CCCH---HHHHHHHHHHHHHHHHHHHhhCC-----CeEEEEECCch
Confidence 9999999965322 1122 23477888888888888876542 24555554443
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.8e-05 Score=69.70 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=57.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|+++++++++.+.+.+ +. .. .. +|..+.+..+.+ .++. .++
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-lG---a~-~~--~~~~~~~~~~~~-~~~~--~~g 235 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACER-LG---AK-RG--INYRSEDFAAVI-KAET--GQG 235 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-HT---CS-EE--EETTTSCHHHHH-HHHH--SSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-cC---CC-EE--EeCCchHHHHHH-HHHh--CCC
Confidence 588999999999999999999999997 89999999877765543 32 22 22 455554433333 3332 457
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 236 ~Dvvid~~g~ 245 (353)
T 4dup_A 236 VDIILDMIGA 245 (353)
T ss_dssp EEEEEESCCG
T ss_pred ceEEEECCCH
Confidence 9999999984
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.78 E-value=5.8e-05 Score=69.30 Aligned_cols=78 Identities=24% Similarity=0.253 Sum_probs=57.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++++++|+|+ ||+|++++..|++.|+..|+++.|+.++++...+.+..... .++ +.+++ .+..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~--~~~-----~~~~~-------~~~~ 202 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS--AYF-----SLAEA-------ETRL 202 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC--CEE-----CHHHH-------HHTG
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC--cee-----eHHHH-------Hhhh
Confidence 578999999997 89999999999999966999999998888877776643211 111 22222 2223
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+||++.+..
T Consensus 203 ~~aDivIn~t~~~ 215 (297)
T 2egg_A 203 AEYDIIINTTSVG 215 (297)
T ss_dssp GGCSEEEECSCTT
T ss_pred ccCCEEEECCCCC
Confidence 4689999999865
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=66.58 Aligned_cols=76 Identities=20% Similarity=0.232 Sum_probs=56.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|+|+ ||+|++++..|++.| .+|+++.|+.++++...+.+...+ .+. ..|+. ++. +
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G-~~v~v~~R~~~~a~~l~~~~~~~~-~~~--~~~~~---~~~-------~-- 178 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYG-NIQ--AVSMD---SIP-------L-- 178 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGS-CEE--EEEGG---GCC-------C--
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHccccC-CeE--EeeHH---Hhc-------c--
Confidence 578999999998 899999999999999 599999999888887777664321 222 23331 110 1
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
+..|+||||++..
T Consensus 179 ~~~DivIn~t~~~ 191 (272)
T 1p77_A 179 QTYDLVINATSAG 191 (272)
T ss_dssp SCCSEEEECCCC-
T ss_pred CCCCEEEECCCCC
Confidence 4799999999865
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00017 Score=59.14 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=57.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.++|.|+ |.+|+.+++.|.+.| +.|++++++ .+..+...+... ..+.++.+|.++.+.+.++ ...+
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g-~~V~vid~~~~~~~~~~~~~~~---~~~~~i~gd~~~~~~l~~a------~i~~ 71 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRLG---DNADVIPGDSNDSSVLKKA------GIDR 71 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHC---TTCEEEESCTTSHHHHHHH------TTTT
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCChHHHHHHHHhhc---CCCeEEEcCCCCHHHHHHc------Chhh
Confidence 456889986 999999999999999 589999997 444444443322 3578899999998875543 1236
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
.|.||.+.+
T Consensus 72 ad~vi~~~~ 80 (153)
T 1id1_A 72 CRAILALSD 80 (153)
T ss_dssp CSEEEECSS
T ss_pred CCEEEEecC
Confidence 899998875
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=67.70 Aligned_cols=79 Identities=20% Similarity=0.258 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++++++++.+.+. .+. .. . .+|.++.+. .+.+.++.. .++
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~-~~g---a~-~--~~d~~~~~~-~~~~~~~~~-~~~ 235 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAK-ALG---AD-E--TVNYTHPDW-PKEVRRLTG-GKG 235 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HHT---CS-E--EEETTSTTH-HHHHHHHTT-TTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-hcC---CC-E--EEcCCcccH-HHHHHHHhC-CCC
Confidence 588999999999999999999999996 9999999987776654 332 22 1 257665432 222332221 237
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|+|+|
T Consensus 236 ~d~vi~~~g 244 (343)
T 2eih_A 236 ADKVVDHTG 244 (343)
T ss_dssp EEEEEESSC
T ss_pred ceEEEECCC
Confidence 999999998
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00022 Score=56.90 Aligned_cols=75 Identities=19% Similarity=0.265 Sum_probs=55.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++.++|+|+ |.+|..+++.|.+.| ..|++++|+++..+...+.. .+.++..|.++.+.+.+. ...+.
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g-~~v~~~d~~~~~~~~~~~~~-----~~~~~~~d~~~~~~l~~~------~~~~~ 70 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDA------GIEDA 70 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHT------TTTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHhc-----CcEEEEcCCCCHHHHHHc------CcccC
Confidence 357899987 999999999999999 59999999987665554322 345778898887654321 23468
Q ss_pred cEEEEccc
Q 018331 125 DVLVCNAA 132 (358)
Q Consensus 125 D~lv~~ag 132 (358)
|+||.+.+
T Consensus 71 d~vi~~~~ 78 (140)
T 1lss_A 71 DMYIAVTG 78 (140)
T ss_dssp SEEEECCS
T ss_pred CEEEEeeC
Confidence 99999964
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00015 Score=65.66 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=58.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|+++|+|+ ||.|++++..|++.|+.+|.++.|+.++++...+.+.. ..+..+. +.+.. .
T Consensus 116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--~~~~~~~--~~~l~----------~- 179 (272)
T 3pwz_A 116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--SRLRISR--YEALE----------G- 179 (272)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--TTEEEEC--SGGGT----------T-
T ss_pred CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--CCeeEee--HHHhc----------c-
Confidence 3678999999998 79999999999999966999999999888888887764 2344332 22111 1
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
...|+|||+...
T Consensus 180 -~~~DivInaTp~ 191 (272)
T 3pwz_A 180 -QSFDIVVNATSA 191 (272)
T ss_dssp -CCCSEEEECSSG
T ss_pred -cCCCEEEECCCC
Confidence 368999999754
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00021 Score=65.06 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++++|+++|+|+ ||+|++++..|++.|+.+|.++.|+.++++...+.+...+ .+.....+ +.
T Consensus 122 ~~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~-~~~~~~~~--~l------------- 184 (281)
T 3o8q_A 122 VLLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG-EVKAQAFE--QL------------- 184 (281)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS-CEEEEEGG--GC-------------
T ss_pred CCccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC-CeeEeeHH--Hh-------------
Confidence 3678999999998 7999999999999996599999999988888877775432 33333221 11
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
....|+|||+....
T Consensus 185 ~~~aDiIInaTp~g 198 (281)
T 3o8q_A 185 KQSYDVIINSTSAS 198 (281)
T ss_dssp CSCEEEEEECSCCC
T ss_pred cCCCCEEEEcCcCC
Confidence 03689999998653
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=9e-05 Score=68.96 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=56.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|+++++++++.+.+ +++. .. .+ .|..+.+..+.+ .++.. ..+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~-~~~g---a~-~~--~~~~~~~~~~~~-~~~~~-~~g 217 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIA-KEYG---AE-YL--INASKEDILRQV-LKFTN-GKG 217 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHTT---CS-EE--EETTTSCHHHHH-HHHTT-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHH-HHcC---Cc-EE--EeCCCchHHHHH-HHHhC-CCC
Confidence 588999999999999999999999997 999999998777644 3332 22 22 355543332222 22211 236
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 218 ~D~vid~~g~ 227 (334)
T 3qwb_A 218 VDASFDSVGK 227 (334)
T ss_dssp EEEEEECCGG
T ss_pred ceEEEECCCh
Confidence 9999999985
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=68.28 Aligned_cols=76 Identities=17% Similarity=0.302 Sum_probs=58.1
Q ss_pred cCCCC--eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKG--SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k--~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++|| +|+|.|| |++|+.+++.|++. +.|.+++++.+.++.+. ..+..+.+|++|.+++.++++
T Consensus 11 ~~~g~~mkilvlGa-G~vG~~~~~~L~~~--~~v~~~~~~~~~~~~~~-------~~~~~~~~d~~d~~~l~~~~~---- 76 (365)
T 3abi_A 11 HIEGRHMKVLILGA-GNIGRAIAWDLKDE--FDVYIGDVNNENLEKVK-------EFATPLKVDASNFDKLVEVMK---- 76 (365)
T ss_dssp -----CCEEEEECC-SHHHHHHHHHHTTT--SEEEEEESCHHHHHHHT-------TTSEEEECCTTCHHHHHHHHT----
T ss_pred cccCCccEEEEECC-CHHHHHHHHHHhcC--CCeEEEEcCHHHHHHHh-------ccCCcEEEecCCHHHHHHHHh----
Confidence 44544 6899998 99999999999764 58899999987766542 345678899999998887766
Q ss_pred cCCCccEEEEccccc
Q 018331 120 SGRPLDVLVCNAAVY 134 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~ 134 (358)
+.|+||++++..
T Consensus 77 ---~~DvVi~~~p~~ 88 (365)
T 3abi_A 77 ---EFELVIGALPGF 88 (365)
T ss_dssp ---TCSEEEECCCGG
T ss_pred ---CCCEEEEecCCc
Confidence 689999998754
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00036 Score=64.44 Aligned_cols=118 Identities=18% Similarity=0.098 Sum_probs=74.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEec--ChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r--~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++||||+|.+|..++..|+..|. ..++++++ +.+.++.....+.. .+..+.+...| +++.+
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~----d~l~~------- 70 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVES----DENLR------- 70 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEE----TTCGG-------
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCC----cchHH-------
Confidence 589999999999999999998873 36888898 65444332222211 11222333222 01111
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.+...|+||++||..... ..+. ...+.+|+.+...+++.+..+- + +.|+++|....
T Consensus 71 al~gaD~Vi~~Ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~~-~-----~~vlv~SNPv~ 126 (313)
T 1hye_A 71 IIDESDVVIITSGVPRKE----GMSR---MDLAKTNAKIVGKYAKKIAEIC-D-----TKIFVITNPVD 126 (313)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHC-C-----CEEEECSSSHH
T ss_pred HhCCCCEEEECCCCCCCC----CCcH---HHHHHHHHHHHHHHHHHHHHhC-C-----eEEEEecCcHH
Confidence 234799999999975321 1232 3458889999999998888765 2 46666665543
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00015 Score=70.35 Aligned_cols=86 Identities=20% Similarity=0.280 Sum_probs=59.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEE--ecCC---------CHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH--LDLA---------SLDSVR 111 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~--~Dl~---------~~~~i~ 111 (358)
-.|+++||+||+|+||.++++.+...|+ +|+++++++++.+.+ +++. ....+-. .|+. +.+++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga-~vi~~~~~~~~~~~~-~~lG---a~~~i~~~~~~~~~~~~~~~~~~~~~~~ 293 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKEAAV-RALG---CDLVINRAELGITDDIADDPRRVVETGR 293 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHTT---CCCEEEHHHHTCCTTGGGCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH-HhcC---CCEEEecccccccccccccccccchhhh
Confidence 3588999999999999999999999997 888888988776655 3332 2222211 1221 124445
Q ss_pred HHHHHHHhc-CCCccEEEEcccc
Q 018331 112 QFVDTFRRS-GRPLDVLVCNAAV 133 (358)
Q Consensus 112 ~~~~~~~~~-~~~iD~lv~~ag~ 133 (358)
.+.+++.+. .+++|++|+|+|.
T Consensus 294 ~~~~~v~~~~g~g~Dvvid~~G~ 316 (447)
T 4a0s_A 294 KLAKLVVEKAGREPDIVFEHTGR 316 (447)
T ss_dssp HHHHHHHHHHSSCCSEEEECSCH
T ss_pred HHHHHHHHHhCCCceEEEECCCc
Confidence 555555553 3479999999984
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0003 Score=66.37 Aligned_cols=78 Identities=18% Similarity=0.201 Sum_probs=57.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+++++++|+|+ |++|+++++.+...|+ +|++++|+.++++.+.+.... .+. ++..+.+++.+.+.
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~---~~~---~~~~~~~~~~~~~~------ 229 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS---RVE---LLYSNSAEIETAVA------ 229 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG---GSE---EEECCHHHHHHHHH------
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc---eeE---eeeCCHHHHHHHHc------
Confidence 467899999999 9999999999999998 999999998887766554321 222 22233444433332
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||++++..
T Consensus 230 -~~DvVI~~~~~~ 241 (361)
T 1pjc_A 230 -EADLLIGAVLVP 241 (361)
T ss_dssp -TCSEEEECCCCT
T ss_pred -CCCEEEECCCcC
Confidence 689999999864
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00023 Score=66.46 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=55.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++++++++.+.+.+ +. .. .++ |.. +++.+.+.++.. ..+
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-~g---a~-~v~--~~~--~~~~~~v~~~~~-~~g 227 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKS-VG---AD-IVL--PLE--EGWAKAVREATG-GAG 227 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-HT---CS-EEE--ESS--TTHHHHHHHHTT-TSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-cC---Cc-EEe--cCc--hhHHHHHHHHhC-CCC
Confidence 588999999999999999999999997 99999998877765443 32 22 222 333 223333333221 226
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 228 ~Dvvid~~g~ 237 (342)
T 4eye_A 228 VDMVVDPIGG 237 (342)
T ss_dssp EEEEEESCC-
T ss_pred ceEEEECCch
Confidence 9999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00013 Score=67.58 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||.++++.+...|+ +|+++++++++.+.+. ++. .. .. .|.++.+..+.+.+ .. ...+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~G---a~-~~--~~~~~~~~~~~~~~-~~-~~~g 209 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAK-ALG---AW-ET--IDYSHEDVAKRVLE-LT-DGKK 209 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH-HHT---CS-EE--EETTTSCHHHHHHH-HT-TTCC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-HcC---CC-EE--EeCCCccHHHHHHH-Hh-CCCC
Confidence 588999999999999999999999997 9999999987776554 332 22 22 35554433333222 21 1237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 210 ~Dvvid~~g~ 219 (325)
T 3jyn_A 210 CPVVYDGVGQ 219 (325)
T ss_dssp EEEEEESSCG
T ss_pred ceEEEECCCh
Confidence 9999999985
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00033 Score=66.49 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=59.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.+.+++++|+|+ |+||+++++.+...|+ +|++++|+...++.+.+.+. ..+ ..+..+..++.+++.
T Consensus 164 ~~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g---~~~---~~~~~~~~~l~~~l~----- 230 (377)
T 2vhw_A 164 PGVEPADVVVIGA-GTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFC---GRI---HTRYSSAYELEGAVK----- 230 (377)
T ss_dssp TTBCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTT---TSS---EEEECCHHHHHHHHH-----
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcC---Cee---EeccCCHHHHHHHHc-----
Confidence 3588999999998 9999999999999997 99999999877766655442 222 234445555554443
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
..|+||++++..
T Consensus 231 --~aDvVi~~~~~p 242 (377)
T 2vhw_A 231 --RADLVIGAVLVP 242 (377)
T ss_dssp --HCSEEEECCCCT
T ss_pred --CCCEEEECCCcC
Confidence 589999998853
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=60.75 Aligned_cols=78 Identities=13% Similarity=0.090 Sum_probs=57.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++.++.++|.| .|.+|..+++.|.+. | ..|++++++++..+...+ ..+.++.+|.++.+.+.++ ..
T Consensus 36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g-~~V~vid~~~~~~~~~~~------~g~~~~~gd~~~~~~l~~~-----~~ 102 (183)
T 3c85_A 36 NPGHAQVLILG-MGRIGTGAYDELRARYG-KISLGIEIREEAAQQHRS------EGRNVISGDATDPDFWERI-----LD 102 (183)
T ss_dssp CCTTCSEEEEC-CSHHHHHHHHHHHHHHC-SCEEEEESCHHHHHHHHH------TTCCEEECCTTCHHHHHTB-----CS
T ss_pred CCCCCcEEEEC-CCHHHHHHHHHHHhccC-CeEEEEECCHHHHHHHHH------CCCCEEEcCCCCHHHHHhc-----cC
Confidence 45677789998 599999999999999 9 599999999877665432 1356777899987654332 01
Q ss_pred CCCccEEEEccc
Q 018331 121 GRPLDVLVCNAA 132 (358)
Q Consensus 121 ~~~iD~lv~~ag 132 (358)
..+.|+||.+.+
T Consensus 103 ~~~ad~vi~~~~ 114 (183)
T 3c85_A 103 TGHVKLVLLAMP 114 (183)
T ss_dssp CCCCCEEEECCS
T ss_pred CCCCCEEEEeCC
Confidence 346899998765
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=67.19 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++++++++.+.+.+ +. .. .. .|..+.+..+.+ .++. ...+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~-lg---a~-~~--~~~~~~~~~~~~-~~~~-~~~g 213 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLR-LG---AA-YV--IDTSTAPLYETV-MELT-NGIG 213 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH-HT---CS-EE--EETTTSCHHHHH-HHHT-TTSC
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-CC---Cc-EE--EeCCcccHHHHH-HHHh-CCCC
Confidence 588999999999999999999999997 99999998877665543 32 22 22 355543332222 2221 1237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 214 ~Dvvid~~g~ 223 (340)
T 3gms_A 214 ADAAIDSIGG 223 (340)
T ss_dssp EEEEEESSCH
T ss_pred CcEEEECCCC
Confidence 9999999985
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00028 Score=66.54 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||..+++.+...|+ +|+++++++++.+.+.+.+. .. . ..|..+.+.+.+ ..++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lG---a~-~--v~~~~~~~~~~~-------~~~~ 251 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFG---AD-S--FLVSRDQEQMQA-------AAGT 251 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSC---CS-E--EEETTCHHHHHH-------TTTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcC---Cc-e--EEeccCHHHHHH-------hhCC
Confidence 6899999996 9999999999999997 89999999877766554443 22 1 246666543322 2247
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 252 ~D~vid~~g~ 261 (366)
T 1yqd_A 252 LDGIIDTVSA 261 (366)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCc
Confidence 9999999985
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00025 Score=58.24 Aligned_cols=80 Identities=14% Similarity=0.171 Sum_probs=56.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+..+++++|.|+ |.+|..+++.|.+.| ..|++++|+++..+.. .. .....++..|.++.+.+.+. .
T Consensus 15 ~~~~~~~v~IiG~-G~iG~~la~~L~~~g-~~V~vid~~~~~~~~~----~~-~~g~~~~~~d~~~~~~l~~~------~ 81 (155)
T 2g1u_A 15 KKQKSKYIVIFGC-GRLGSLIANLASSSG-HSVVVVDKNEYAFHRL----NS-EFSGFTVVGDAAEFETLKEC------G 81 (155)
T ss_dssp --CCCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCGGGGGGS----CT-TCCSEEEESCTTSHHHHHTT------T
T ss_pred cccCCCcEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHH----Hh-cCCCcEEEecCCCHHHHHHc------C
Confidence 3566789999996 999999999999999 5999999997654332 20 12345677888876543321 1
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
....|+||.+.+.
T Consensus 82 ~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 82 MEKADMVFAFTND 94 (155)
T ss_dssp GGGCSEEEECSSC
T ss_pred cccCCEEEEEeCC
Confidence 2368999998763
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00057 Score=66.46 Aligned_cols=85 Identities=21% Similarity=0.274 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEE---e--------cCCCHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH---L--------DLASLDSVR 111 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~---~--------Dl~~~~~i~ 111 (358)
-.|.++||+||+|+||...++.+...|+ +|+++++++++++.+ +++.. . .++. . +..+..+++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga-~vi~~~~~~~~~~~~-~~lGa---~-~vi~~~~~d~~~~~~~~~~~~~~~~ 300 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGA-NPICVVSSPQKAEIC-RAMGA---E-AIIDRNAEGYRFWKDENTQDPKEWK 300 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH-HHHTC---C-EEEETTTTTCCSEEETTEECHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEECCHHHHHHH-HhhCC---c-EEEecCcCcccccccccccchHHHH
Confidence 3588999999999999999999999997 888888888777655 33432 1 1111 1 124566777
Q ss_pred HHHHHHHhcC--CCccEEEEcccc
Q 018331 112 QFVDTFRRSG--RPLDVLVCNAAV 133 (358)
Q Consensus 112 ~~~~~~~~~~--~~iD~lv~~ag~ 133 (358)
++.+.+.+.. .++|++|.++|.
T Consensus 301 ~~~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 301 RFGKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHHHhCCCCCcEEEEcCCc
Confidence 7777776642 379999999984
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0003 Score=62.79 Aligned_cols=84 Identities=21% Similarity=0.270 Sum_probs=61.6
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCC--ceE
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKE--NYT 98 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~--~i~ 98 (358)
...|++++++|.|+ ||+|.++++.|+..|..+|.+++++. .+.+.+.+.+...+. ++.
T Consensus 26 q~~l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~ 104 (249)
T 1jw9_B 26 QEALKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAIT 104 (249)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEE
Confidence 34688899999996 79999999999999977999999986 677777666655333 455
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 99 ~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
.+..+++. +.+.++++ ..|+||.+.+
T Consensus 105 ~~~~~~~~-~~~~~~~~-------~~DvVi~~~d 130 (249)
T 1jw9_B 105 PVNALLDD-AELAALIA-------EHDLVLDCTD 130 (249)
T ss_dssp EECSCCCH-HHHHHHHH-------TSSEEEECCS
T ss_pred EEeccCCH-hHHHHHHh-------CCCEEEEeCC
Confidence 55555653 33344333 6899998864
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00055 Score=63.98 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=55.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||...++.+...|+ +|+++++++++.+.+.+ +. .. .+ .|..+ ++.+.+.++ ..+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~-lG---a~-~v--i~~~~--~~~~~~~~~--~~~g 217 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKK-MG---AD-IV--LNHKE--SLLNQFKTQ--GIEL 217 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHH-HT---CS-EE--ECTTS--CHHHHHHHH--TCCC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh-cC---Cc-EE--EECCc--cHHHHHHHh--CCCC
Confidence 689999999999999999999999997 99999999877665544 32 12 22 23332 222223333 2347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+|+|.
T Consensus 218 ~Dvv~d~~g~ 227 (346)
T 3fbg_A 218 VDYVFCTFNT 227 (346)
T ss_dssp EEEEEESSCH
T ss_pred ccEEEECCCc
Confidence 9999999885
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00046 Score=65.00 Aligned_cols=103 Identities=21% Similarity=0.270 Sum_probs=69.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++++++++.+.+.+ +. .. .+ .|..+.+ +.+.+.+.. .++
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~-~G---a~-~~--~~~~~~~-~~~~~~~~~--~~g 231 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS-LG---CD-RP--INYKTEP-VGTVLKQEY--PEG 231 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-TT---CS-EE--EETTTSC-HHHHHHHHC--TTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH-cC---Cc-EE--EecCChh-HHHHHHHhc--CCC
Confidence 588999999999999999999999997 89999999777665543 32 22 22 3444322 223333321 247
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+|++|+|+|.. ..+.+++.+.. +|++|.+++..+
T Consensus 232 ~D~vid~~g~~---------------------------~~~~~~~~l~~----~G~iv~~g~~~~ 265 (362)
T 2c0c_A 232 VDVVYESVGGA---------------------------MFDLAVDALAT----KGRLIVIGFISG 265 (362)
T ss_dssp EEEEEECSCTH---------------------------HHHHHHHHEEE----EEEEEECCCGGG
T ss_pred CCEEEECCCHH---------------------------HHHHHHHHHhc----CCEEEEEeCCCC
Confidence 99999999831 12344555555 379999887654
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00095 Score=61.32 Aligned_cols=115 Identities=14% Similarity=0.016 Sum_probs=71.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEec--ChHHHHHHHHHhcC---CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACR--DFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r--~~~~~~~~~~~~~~---~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+++||||+|.+|.+++..|+..|. ..++++++ +.++++.....+.. ....+.+.. + +. +.
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~~----~a------- 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--GY----ED------- 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--CG----GG-------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--CH----HH-------
Confidence 589999999999999999998873 36888998 76554433333321 122333332 2 11 11
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+...|+||++||..... ..+. ...+.+|+.....+.+.+..+ . +++.|+++|...
T Consensus 68 ~~~aDvVi~~ag~~~~~----g~~r---~dl~~~N~~i~~~i~~~i~~~----~-p~~~viv~SNPv 122 (303)
T 1o6z_A 68 TAGSDVVVITAGIPRQP----GQTR---IDLAGDNAPIMEDIQSSLDEH----N-DDYISLTTSNPV 122 (303)
T ss_dssp GTTCSEEEECCCCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHTT----C-SCCEEEECCSSH
T ss_pred hCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHH----C-CCcEEEEeCChH
Confidence 33799999999975322 1233 234777888777777776544 2 235666655444
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00063 Score=63.59 Aligned_cols=79 Identities=13% Similarity=0.100 Sum_probs=55.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
++++||+||+|+||..+++.+...|+ +|+++++++++.+.+. ++. .. .+ .|..+.+..+. +.++... .++
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~~G---a~-~~--~~~~~~~~~~~-v~~~~~~-~g~ 234 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTVRRDEQIALLK-DIG---AA-HV--LNEKAPDFEAT-LREVMKA-EQP 234 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESCGGGHHHHH-HHT---CS-EE--EETTSTTHHHH-HHHHHHH-HCC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-HcC---CC-EE--EECCcHHHHHH-HHHHhcC-CCC
Confidence 48999999999999999999999997 9999999987776554 332 22 22 34444332222 2222221 269
Q ss_pred cEEEEcccc
Q 018331 125 DVLVCNAAV 133 (358)
Q Consensus 125 D~lv~~ag~ 133 (358)
|++|+|+|.
T Consensus 235 D~vid~~g~ 243 (349)
T 3pi7_A 235 RIFLDAVTG 243 (349)
T ss_dssp CEEEESSCH
T ss_pred cEEEECCCC
Confidence 999999985
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00084 Score=62.51 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+|| |+||..+++.+...|+ +|+++++++++.+.+. ++. .. . .+|.++.+ +.+.+.++. ++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~lG---a~-~--~~d~~~~~-~~~~~~~~~---~~ 230 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAK-ELG---AD-L--VVNPLKED-AAKFMKEKV---GG 230 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHH-HTT---CS-E--EECTTTSC-HHHHHHHHH---SS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HCC---CC-E--EecCCCcc-HHHHHHHHh---CC
Confidence 5889999999 8899999999999997 9999999987776553 332 22 1 24666433 222233332 47
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+++|.
T Consensus 231 ~d~vid~~g~ 240 (339)
T 1rjw_A 231 VHAAVVTAVS 240 (339)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00067 Score=63.34 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++ +++++.+.+ +++. .. . +| .+. ++.+.+.+... ..+
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~-~~lG---a~--~--i~-~~~-~~~~~~~~~~~-~~g 216 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYV-RDLG---AT--P--ID-ASR-EPEDYAAEHTA-GQG 216 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHH-HHHT---SE--E--EE-TTS-CHHHHHHHHHT-TSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHH-HHcC---CC--E--ec-cCC-CHHHHHHHHhc-CCC
Confidence 588999999999999999999999997 88888 777665544 3342 22 2 44 332 22333333322 237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.|+|.
T Consensus 217 ~D~vid~~g~ 226 (343)
T 3gaz_A 217 FDLVYDTLGG 226 (343)
T ss_dssp EEEEEESSCT
T ss_pred ceEEEECCCc
Confidence 9999999983
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0015 Score=52.49 Aligned_cols=77 Identities=6% Similarity=0.048 Sum_probs=58.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++ .++|.|+ |.+|..+++.|.+.| +.|++++++++..+...+ ..+.++.+|.++.+.+.++ ..
T Consensus 5 ~~~~-~viIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~~~~------~g~~~i~gd~~~~~~l~~a------~i 69 (140)
T 3fwz_A 5 DICN-HALLVGY-GRVGSLLGEKLLASD-IPLVVIETSRTRVDELRE------RGVRAVLGNAANEEIMQLA------HL 69 (140)
T ss_dssp CCCS-CEEEECC-SHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHH------TTCEEEESCTTSHHHHHHT------TG
T ss_pred cCCC-CEEEECc-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHH------cCCCEEECCCCCHHHHHhc------Cc
Confidence 3444 4778886 899999999999999 599999999877766543 2567888999999866553 11
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
.+.|++|.+.+.
T Consensus 70 ~~ad~vi~~~~~ 81 (140)
T 3fwz_A 70 ECAKWLILTIPN 81 (140)
T ss_dssp GGCSEEEECCSC
T ss_pred ccCCEEEEECCC
Confidence 257888887653
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0013 Score=61.40 Aligned_cols=104 Identities=22% Similarity=0.266 Sum_probs=68.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+|+ |+||..+++.+...|+.+|+++++++++.+.+. ++. .. .+ .|..+.+ +.+.+.++.. ...
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~G---a~-~~--~~~~~~~-~~~~v~~~~~-g~g 236 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVG---AD-YV--INPFEED-VVKEVMDITD-GNG 236 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHT---CS-EE--ECTTTSC-HHHHHHHHTT-TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhC---CC-EE--ECCCCcC-HHHHHHHHcC-CCC
Confidence 7889999999 999999999999999647999999977766543 332 11 12 3544432 2222222211 236
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+|++|.++|.. ..++.+++.+.. +|++|.+++..
T Consensus 237 ~D~vid~~g~~--------------------------~~~~~~~~~l~~----~G~iv~~g~~~ 270 (348)
T 2d8a_A 237 VDVFLEFSGAP--------------------------KALEQGLQAVTP----AGRVSLLGLYP 270 (348)
T ss_dssp EEEEEECSCCH--------------------------HHHHHHHHHEEE----EEEEEECCCCS
T ss_pred CCEEEECCCCH--------------------------HHHHHHHHHHhc----CCEEEEEccCC
Confidence 99999999841 123455566655 37999987654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0018 Score=60.79 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=60.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |++|...++.+...|+..|+++++++++.+.+.+. . ..+..+..|-.+.+++.+.+.++.. ..+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~---~~~~~~~~~~~~~~~~~~~v~~~t~-g~g 252 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C---PEVVTHKVERLSAEESAKKIVESFG-GIE 252 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C---TTCEEEECCSCCHHHHHHHHHHHTS-SCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c---hhcccccccccchHHHHHHHHHHhC-CCC
Confidence 5889999998 99999999999999984599999998777665543 2 3444455665556655544444322 237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 253 ~Dvvid~~g~ 262 (363)
T 3m6i_A 253 PAVALECTGV 262 (363)
T ss_dssp CSEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999884
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00067 Score=62.05 Aligned_cols=74 Identities=16% Similarity=0.198 Sum_probs=53.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|++|..+++.+...|+ +|+++++++++.+.+. ++. .. .. .|..+.++ +.+.+ ++
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~-~~g---a~-~~--~~~~~~~~---~~~~~----~~ 189 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL-ALG---AE-EA--ATYAEVPE---RAKAW----GG 189 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH-HTT---CS-EE--EEGGGHHH---HHHHT----TS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH-hcC---CC-EE--EECCcchh---HHHHh----cC
Confidence 588999999999999999999999997 9999999887766553 332 22 12 45544112 22222 47
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|+ +|.
T Consensus 190 ~d~vid-~g~ 198 (302)
T 1iz0_A 190 LDLVLE-VRG 198 (302)
T ss_dssp EEEEEE-CSC
T ss_pred ceEEEE-CCH
Confidence 999999 874
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00022 Score=57.87 Aligned_cols=71 Identities=13% Similarity=0.198 Sum_probs=53.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++++|.|+ |++|+.+++.|.+.|+ .|++++|+.++.+...+.+. .... +..+. .+++. ..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~-----~~~~--~~~~~---~~~~~-------~~ 81 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYE-----YEYV--LINDI---DSLIK-------NN 81 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHT-----CEEE--ECSCH---HHHHH-------TC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhC-----CceE--eecCH---HHHhc-------CC
Confidence 889999996 9999999999999996 69999999888777666653 1211 23333 23333 58
Q ss_pred cEEEEccccc
Q 018331 125 DVLVCNAAVY 134 (358)
Q Consensus 125 D~lv~~ag~~ 134 (358)
|+||++.+..
T Consensus 82 Divi~at~~~ 91 (144)
T 3oj0_A 82 DVIITATSSK 91 (144)
T ss_dssp SEEEECSCCS
T ss_pred CEEEEeCCCC
Confidence 9999998764
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00026 Score=65.07 Aligned_cols=93 Identities=15% Similarity=0.152 Sum_probs=62.5
Q ss_pred cCCCCe-EEEEcCCC-----------------c-hHHHHHHHHHhCCCcEEEEEecChHHH--------HHHHHHhcC--
Q 018331 42 TLRKGS-VIITGASS-----------------G-LGLATAKALAETGKWHIIMACRDFLKA--------ERAAKSAGM-- 92 (358)
Q Consensus 42 ~l~~k~-~lITGas~-----------------g-IG~aia~~La~~Ga~~Vi~~~r~~~~~--------~~~~~~~~~-- 92 (358)
++.||+ +|||+|.. | .|.++|+.++++|+ .|+++.+..+.. ....+.+..
T Consensus 33 ~l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga-~V~lv~g~~sl~p~~r~~~~~~~~~~~~~~~ 111 (313)
T 1p9o_A 33 GAQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGY-GVLFLYRARSAFPYAHRFPPQTWLSALRPSG 111 (313)
T ss_dssp HHTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTC-EEEEEEETTSCCTTGGGSCHHHHHHHCEECC
T ss_pred hhcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCC-EEEEEecCCCcCcchhccCccchhhhhcccc
Confidence 578888 99997765 5 99999999999996 888887753210 011121111
Q ss_pred -CCCceEEEEecCCCHHHHHHHHHHH------------------------------HhcCCCccEEEEcccccC
Q 018331 93 -AKENYTIMHLDLASLDSVRQFVDTF------------------------------RRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 93 -~~~~i~~~~~Dl~~~~~i~~~~~~~------------------------------~~~~~~iD~lv~~ag~~~ 135 (358)
....+..+.+|+.+.+++.+++.+. .+.++..|++|++|+...
T Consensus 112 ~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsD 185 (313)
T 1p9o_A 112 PALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSD 185 (313)
T ss_dssp C-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCS
T ss_pred ccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhh
Confidence 1123456777887777777766543 234567999999999864
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=63.20 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=55.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.|++++|.|+ |++|+.+++.|...|+.+|++++|+..+++...+.+.. .. .+. +++.+.+.
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~-----~~--~~~---~~l~~~l~------ 226 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-----EA--VRF---DELVDHLA------ 226 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-----EE--CCG---GGHHHHHH------
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-----ce--ecH---HhHHHHhc------
Confidence 478999999998 99999999999999965899999998777655555531 11 222 22333332
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||++.|..
T Consensus 227 -~aDvVi~at~~~ 238 (404)
T 1gpj_A 227 -RSDVVVSATAAP 238 (404)
T ss_dssp -TCSEEEECCSSS
T ss_pred -CCCEEEEccCCC
Confidence 689999998643
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0019 Score=58.80 Aligned_cols=91 Identities=20% Similarity=0.399 Sum_probs=66.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh------------------HHHHHHHHHhcCCCC--ceEEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF------------------LKAERAAKSAGMAKE--NYTIM 100 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~------------------~~~~~~~~~~~~~~~--~i~~~ 100 (358)
..|++++++|.|+ ||+|.++++.|+..|.-++.+++.+. .+.+.+.+.+...+. ++..+
T Consensus 32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~ 110 (292)
T 3h8v_A 32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVH 110 (292)
T ss_dssp CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEe
Confidence 4688899999976 89999999999999988999998765 456666666654433 46666
Q ss_pred EecCCCHHHHHHHHHHHHhc----CCCccEEEEccc
Q 018331 101 HLDLASLDSVRQFVDTFRRS----GRPLDVLVCNAA 132 (358)
Q Consensus 101 ~~Dl~~~~~i~~~~~~~~~~----~~~iD~lv~~ag 132 (358)
..+++..+.+..+++.+... ....|+||.+..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D 146 (292)
T 3h8v_A 111 NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD 146 (292)
T ss_dssp CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred cccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence 67787767777666554321 136899987664
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0011 Score=61.69 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|| |++|..+++.+...|+.+|+++++++++.+.+.+ + .. . ..|..+. ++.+.+.++. .++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l----a~-~--v~~~~~~-~~~~~~~~~~--~~g 231 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y----AD-R--LVNPLEE-DLLEVVRRVT--GSG 231 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T----CS-E--EECTTTS-CHHHHHHHHH--SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h----HH-h--ccCcCcc-CHHHHHHHhc--CCC
Confidence 7889999999 9999999999989996479999998766543321 1 11 1 1354442 2333334333 347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 232 ~D~vid~~g~ 241 (343)
T 2dq4_A 232 VEVLLEFSGN 241 (343)
T ss_dssp EEEEEECSCC
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0018 Score=56.20 Aligned_cols=73 Identities=23% Similarity=0.238 Sum_probs=57.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.|+ |.+|..+++.|.++| +.|++++++++..+...+.. ...++.+|.++.+.++++ ...+.|+
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g-~~v~vid~~~~~~~~l~~~~-----~~~~i~gd~~~~~~l~~a------~i~~ad~ 68 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRK-YGVVIINKDRELCEEFAKKL-----KATIIHGDGSHKEILRDA------EVSKNDV 68 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTT-CCEEEEESCHHHHHHHHHHS-----SSEEEESCTTSHHHHHHH------TCCTTCE
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHc-----CCeEEEcCCCCHHHHHhc------CcccCCE
Confidence 4899996 999999999999999 59999999987776654432 457899999998776543 1346899
Q ss_pred EEEccc
Q 018331 127 LVCNAA 132 (358)
Q Consensus 127 lv~~ag 132 (358)
+|.+.+
T Consensus 69 vi~~~~ 74 (218)
T 3l4b_C 69 VVILTP 74 (218)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 987764
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.005 Score=56.74 Aligned_cols=118 Identities=16% Similarity=0.111 Sum_probs=72.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCC--ceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~--~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++.|+||+|.+|..++..|+..|. ..|+++++++ .+.....+..... ++.... ..++.+++++ .
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~-------~ 68 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYL----GPEQLPDCLK-------G 68 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHT-------T
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEec----CCCCHHHHhC-------C
Confidence 589999999999999999998872 4899999986 2333334433211 122211 0122333333 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.|+||+++|..... ..+. ...+..|+.....+.+.+..+. +++++|++|-....
T Consensus 69 aDvVvi~ag~~~~~----g~~r---~dl~~~n~~i~~~i~~~i~~~~-----p~a~viv~sNPv~~ 122 (314)
T 1mld_A 69 CDVVVIPAGVPRKP----GMTR---DDLFNTNATIVATLTAACAQHC-----PDAMICIISNPVNS 122 (314)
T ss_dssp CSEEEECCSCCCCT----TCCG---GGGHHHHHHHHHHHHHHHHHHC-----TTSEEEECSSCHHH
T ss_pred CCEEEECCCcCCCC----CCcH---HHHHHHHHHHHHHHHHHHHhhC-----CCeEEEEECCCcch
Confidence 89999999975322 1222 2335667666666666665543 24788888766543
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=60.55 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=52.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|+++||+||+|+||..+++.+...|+ +|+++++ +++.+.+ +++. .. .+ .|..+.+. .+++.+ .++
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~~-~~~~~~~-~~lG---a~-~v--~~~~~~~~----~~~~~~-~~g 248 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVCS-QDASELV-RKLG---AD-DV--IDYKSGSV----EEQLKS-LKP 248 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC-GGGHHHH-HHTT---CS-EE--EETTSSCH----HHHHHT-SCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEeC-hHHHHHH-HHcC---CC-EE--EECCchHH----HHHHhh-cCC
Confidence 588999999999999999999999997 8888884 4454443 4442 22 22 35444322 223332 257
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.|+|.
T Consensus 249 ~D~vid~~g~ 258 (375)
T 2vn8_A 249 FDFILDNVGG 258 (375)
T ss_dssp BSEEEESSCT
T ss_pred CCEEEECCCC
Confidence 9999999984
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0045 Score=58.52 Aligned_cols=81 Identities=20% Similarity=0.255 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC--CHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~--~~~~i~~~~~~~~~~~ 121 (358)
.|.++||+| +|++|...++.+...|+.+|+++++++++.+.+. ++. .. .+ .|.. +.+++.+.+.++.. .
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~lG---a~-~v--i~~~~~~~~~~~~~v~~~~~-g 265 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIG---AD-LT--LNRRETSVEERRKAIMDITH-G 265 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTT---CS-EE--EETTTSCHHHHHHHHHHHTT-T
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-HcC---Cc-EE--EeccccCcchHHHHHHHHhC-C
Confidence 478999999 8999999999998899549999999987766554 332 22 22 2433 23343333333321 1
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
.++|++|.++|.
T Consensus 266 ~g~Dvvid~~g~ 277 (380)
T 1vj0_A 266 RGADFILEATGD 277 (380)
T ss_dssp SCEEEEEECSSC
T ss_pred CCCcEEEECCCC
Confidence 269999999984
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00022 Score=64.68 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=37.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAER 85 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~ 85 (358)
++++|+++|+|+ ||.|++++..|++.|+..|.++.|+.++++.
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~ 156 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNN 156 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTT
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHH
Confidence 578999999997 8999999999999996689999999766543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0096 Score=55.64 Aligned_cols=80 Identities=15% Similarity=0.212 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCC--CHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA--SLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~--~~~~i~~~~~~~~~~~ 121 (358)
.|.++||+|+ |++|...++.+...|+.+|+++++++++.+.+. ++. .. .+ .|.. +.+++.+.+.+...
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a~-~v--i~~~~~~~~~~~~~i~~~~~-- 240 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIG---AD-LV--LQISKESPQEIARKVEGQLG-- 240 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTT---CS-EE--EECSSCCHHHHHHHHHHHHT--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhC---CC-EE--EcCcccccchHHHHHHHHhC--
Confidence 5889999996 999999999888899658999999987766543 332 22 22 3444 22333322333222
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+++|++|.++|.
T Consensus 241 ~g~D~vid~~g~ 252 (356)
T 1pl8_A 241 CKPEVTIECTGA 252 (356)
T ss_dssp SCCSEEEECSCC
T ss_pred CCCCEEEECCCC
Confidence 479999999984
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0036 Score=55.77 Aligned_cols=83 Identities=23% Similarity=0.283 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCCc--eEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKEN--YTI 99 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~--i~~ 99 (358)
..|++++++|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+...+.. +..
T Consensus 24 ~~l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 102 (251)
T 1zud_1 24 QKLLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTA 102 (251)
T ss_dssp HHHHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 4678899999997 78999999999999987888886542 4566666666543333 444
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 100 ~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
+..+++ .+.+.++++ ..|+||++..
T Consensus 103 ~~~~~~-~~~~~~~~~-------~~DvVi~~~d 127 (251)
T 1zud_1 103 LQQRLT-GEALKDAVA-------RADVVLDCTD 127 (251)
T ss_dssp ECSCCC-HHHHHHHHH-------HCSEEEECCS
T ss_pred EeccCC-HHHHHHHHh-------cCCEEEECCC
Confidence 444444 334444443 4799998754
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0019 Score=60.29 Aligned_cols=119 Identities=16% Similarity=0.080 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++++.|+|++|.+|..++..++..|. ..|++++.+.++++-....+... ..++.+ . ++. .+.++
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t---~d~---~~al~--- 75 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-T---SDI---KEALT--- 75 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-E---SCH---HHHHT---
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-c---CCH---HHHhC---
Confidence 4567899999999999999999999983 47999999987666544444321 112221 0 121 22222
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCe-EEEEecCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKR-LIIVGSIT 187 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~-iv~vsS~~ 187 (358)
..|+||.++|....+ ..+ -...+..|..-...+.+.+..+- +++. ++++|-..
T Consensus 76 ----dADvVvitaG~p~kp----G~~---R~dLl~~N~~I~~~i~~~i~~~~-----p~a~~vlvvsNPv 129 (343)
T 3fi9_A 76 ----DAKYIVSSGGAPRKE----GMT---REDLLKGNAEIAAQLGKDIKSYC-----PDCKHVIIIFNPA 129 (343)
T ss_dssp ----TEEEEEECCC-----------C---HHHHHHHHHHHHHHHHHHHHHHC-----TTCCEEEECSSSH
T ss_pred ----CCCEEEEccCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhc-----cCcEEEEEecCch
Confidence 689999999974221 122 23345666655555555554442 2364 77777654
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0051 Score=57.76 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+| +|++|...++.+...|+ +|+++++++++.+.+ +++. .. .+ .| .+.+++.+.+.++.. ..+
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~lG---a~-~v--i~-~~~~~~~~~v~~~~~-g~g 257 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGA-EVIVTSSSREKLDRA-FALG---AD-HG--IN-RLEEDWVERVYALTG-DRG 257 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHHT---CS-EE--EE-TTTSCHHHHHHHHHT-TCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCC-EEEEEecCchhHHHH-HHcC---CC-EE--Ec-CCcccHHHHHHHHhC-CCC
Confidence 588999999 89999999999999997 999999998776664 3343 22 22 34 332333333333332 236
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|.++|
T Consensus 258 ~D~vid~~g 266 (363)
T 3uog_A 258 ADHILEIAG 266 (363)
T ss_dssp EEEEEEETT
T ss_pred ceEEEECCC
Confidence 999999998
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.014 Score=54.47 Aligned_cols=80 Identities=19% Similarity=0.246 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHh--c
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRR--S 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~--~ 120 (358)
.|.++||+|+ |++|...++.+...|+ .|+++++++++.+.+. ++. .. .+ .|..+ .+..+++. +... .
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~lG---a~-~~--~~~~~~~~~~~~i~-~~~~~~~ 237 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAK-NCG---AD-VT--LVVDPAKEEESSII-ERIRSAI 237 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH-HTT---CS-EE--EECCTTTSCHHHHH-HHHHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHH-HhC---CC-EE--EcCcccccHHHHHH-HHhcccc
Confidence 5889999997 9999999999988997 6999999987766543 332 22 22 34443 22222222 2211 1
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
.+++|++|.++|.
T Consensus 238 g~g~D~vid~~g~ 250 (352)
T 1e3j_A 238 GDLPNVTIDCSGN 250 (352)
T ss_dssp SSCCSEEEECSCC
T ss_pred CCCCCEEEECCCC
Confidence 2469999999984
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0022 Score=59.27 Aligned_cols=75 Identities=16% Similarity=0.214 Sum_probs=49.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++||+||+|++|...++.+...|+ +|+++++++++.+.+. ++. .. .+ +|..+.+ .+.+.++. .+++|+
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~-~lG---a~-~~--i~~~~~~--~~~~~~~~--~~~~d~ 219 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLR-VLG---AK-EV--LAREDVM--AERIRPLD--KQRWAA 219 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHH-HTT---CS-EE--EECC-----------CC--SCCEEE
T ss_pred eEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH-HcC---Cc-EE--EecCCcH--HHHHHHhc--CCcccE
Confidence 799999999999999999999997 7999999876666553 332 22 22 3444332 12222221 246999
Q ss_pred EEEcccc
Q 018331 127 LVCNAAV 133 (358)
Q Consensus 127 lv~~ag~ 133 (358)
+|.|+|.
T Consensus 220 vid~~g~ 226 (328)
T 1xa0_A 220 AVDPVGG 226 (328)
T ss_dssp EEECSTT
T ss_pred EEECCcH
Confidence 9999984
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0021 Score=59.81 Aligned_cols=119 Identities=11% Similarity=0.004 Sum_probs=71.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cE-----EEEEecCh--HHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WH-----IIMACRDF--LKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~-----Vi~~~r~~--~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++||||+|.||..++..|+..|. .. +++++++. +.++-...++.... .-.. .....+ ...+.
T Consensus 5 kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~--~~~~~~--~~~~~---- 76 (333)
T 5mdh_A 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLK--DVIATD--KEEIA---- 76 (333)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEE--EEEEES--CHHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccC--CEEEcC--CcHHH----
Confidence 699999999999999999998773 23 88999864 34444444443221 1111 111111 11111
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCC-eEEEEecCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSK-RLIIVGSITG 188 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g-~iv~vsS~~~ 188 (358)
+...|+||++||....+ ..+ -...++.|+.....+...+..+-. ++ +++++|-...
T Consensus 77 ---~~daDvVvitAg~prkp----G~t---R~dll~~N~~i~~~i~~~i~~~~~-----~~~~vivvsNPvd 133 (333)
T 5mdh_A 77 ---FKDLDVAILVGSMPRRD----GME---RKDLLKANVKIFKCQGAALDKYAK-----KSVKVIVVGNPAN 133 (333)
T ss_dssp ---TTTCSEEEECCSCCCCT----TCC---TTTTHHHHHHHHHHHHHHHHHHSC-----TTCEEEECSSSHH
T ss_pred ---hCCCCEEEEeCCCCCCC----CCC---HHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEEcCCchH
Confidence 33789999999864221 122 234566777776666666655432 24 5888876643
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0051 Score=57.91 Aligned_cols=80 Identities=16% Similarity=0.182 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |++|...++.+...|+.+|+++++++++.+.+. ++. .. .+ +|..+ .+++.+.+.++.. +
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lG---a~-~v--i~~~~~~~~~~~~~~~~~~--~ 261 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VFG---AT-DF--VNPNDHSEPISQVLSKMTN--G 261 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTT---CC-EE--ECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HhC---Cc-eE--EeccccchhHHHHHHHHhC--C
Confidence 5789999995 999999999998899658999999987776553 332 22 22 34432 1223333444333 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 262 g~D~vid~~g~ 272 (374)
T 1cdo_A 262 GVDFSLECVGN 272 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999985
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0029 Score=59.28 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=50.6
Q ss_pred CC-CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH---HHHHHHhcCCCCceEEEEecCCCH--HHHHHHHHHH
Q 018331 44 RK-GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA---ERAAKSAGMAKENYTIMHLDLASL--DSVRQFVDTF 117 (358)
Q Consensus 44 ~~-k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~---~~~~~~~~~~~~~i~~~~~Dl~~~--~~i~~~~~~~ 117 (358)
.| .++||+||+|++|...++.+...|+ +|+.++++.++. ....+++. .. .++ |..+. +++.+.+.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~~~~lG---a~-~vi--~~~~~~~~~~~~~i~~~ 238 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELG---AT-QVI--TEDQNNSREFGPTIKEW 238 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHT---CS-EEE--EHHHHHCGGGHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCC-EEEEEecCccccHHHHHHHHhcC---Ce-EEE--ecCccchHHHHHHHHHH
Confidence 46 8999999999999999998888997 788887665442 12223443 22 222 22110 1222222322
Q ss_pred Hh-cCCCccEEEEcccc
Q 018331 118 RR-SGRPLDVLVCNAAV 133 (358)
Q Consensus 118 ~~-~~~~iD~lv~~ag~ 133 (358)
.. ..+++|++|.++|.
T Consensus 239 t~~~~~g~Dvvid~~G~ 255 (364)
T 1gu7_A 239 IKQSGGEAKLALNCVGG 255 (364)
T ss_dssp HHHHTCCEEEEEESSCH
T ss_pred hhccCCCceEEEECCCc
Confidence 20 13479999999984
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0088 Score=55.98 Aligned_cols=78 Identities=22% Similarity=0.195 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|| |++|...++.+... |+ +|+++++++++.+.+. ++. .. ++ .|..+. +.+.+.++.. ..
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga-~Vi~~~~~~~~~~~~~-~lG---a~-~v--i~~~~~--~~~~v~~~~~-g~ 253 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPA-TVIALDVKEEKLKLAE-RLG---AD-HV--VDARRD--PVKQVMELTR-GR 253 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCC-EEEEEESSHHHHHHHH-HTT---CS-EE--EETTSC--HHHHHHHHTT-TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCC-eEEEEeCCHHHHHHHH-HhC---CC-EE--Eeccch--HHHHHHHHhC-CC
Confidence 5789999999 89999999988888 97 8999999987766553 342 22 22 354443 3333333322 22
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 254 g~Dvvid~~G~ 264 (359)
T 1h2b_A 254 GVNVAMDFVGS 264 (359)
T ss_dssp CEEEEEESSCC
T ss_pred CCcEEEECCCC
Confidence 69999999985
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0036 Score=54.83 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=55.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+.++|.|+ |.+|+.+++.|.+.| + |++++++++..+... ..+.++.+|.++.+.+.++ ...+.
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g-~-v~vid~~~~~~~~~~-------~~~~~i~gd~~~~~~l~~a------~i~~a 72 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKKVLR-------SGANFVHGDPTRVSDLEKA------NVRGA 72 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSE-E-EEEESCGGGHHHHHH-------TTCEEEESCTTCHHHHHHT------TCTTC
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCC-e-EEEEECCHHHHHHHh-------cCCeEEEcCCCCHHHHHhc------Ccchh
Confidence 346899997 899999999999999 6 999999876655443 2478899999998765543 12368
Q ss_pred cEEEEccc
Q 018331 125 DVLVCNAA 132 (358)
Q Consensus 125 D~lv~~ag 132 (358)
|.||.+.+
T Consensus 73 d~vi~~~~ 80 (234)
T 2aef_A 73 RAVIVDLE 80 (234)
T ss_dssp SEEEECCS
T ss_pred cEEEEcCC
Confidence 89888754
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0051 Score=55.34 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|+++|.|+ ||.|++++..|++.| ..|.++.|+.++++... ++. +... +..+. ...
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G-~~v~V~nRt~~ka~~la-~~~-----~~~~--~~~~l--------------~~~ 173 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQG-LQVSVLNRSSRGLDFFQ-RLG-----CDCF--MEPPK--------------SAF 173 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCTTHHHHH-HHT-----CEEE--SSCCS--------------SCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHH-HCC-----CeEe--cHHHh--------------ccC
Confidence 889999997 999999999999999 69999999988877766 443 2222 22221 158
Q ss_pred cEEEEccccc
Q 018331 125 DVLVCNAAVY 134 (358)
Q Consensus 125 D~lv~~ag~~ 134 (358)
|+|||+....
T Consensus 174 DiVInaTp~G 183 (269)
T 3phh_A 174 DLIINATSAS 183 (269)
T ss_dssp SEEEECCTTC
T ss_pred CEEEEcccCC
Confidence 9999997653
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0065 Score=57.06 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=52.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-C
Q 018331 44 RKGSVIITGASSGLGLATAKALAE-TGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-G 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~ 121 (358)
.|.++||+||+|++|...++.+.. .|+ +|+++++++++.+.+. ++. .. .+ .|..+ + +.+.+.+. .
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~~~~~-~lG---ad-~v--i~~~~--~---~~~~v~~~~~ 237 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQEWVK-SLG---AH-HV--IDHSK--P---LAAEVAALGL 237 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHHHHHH-HTT---CS-EE--ECTTS--C---HHHHHHTTCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHH-HcC---CC-EE--EeCCC--C---HHHHHHHhcC
Confidence 578999999999999988877665 475 9999999987766553 332 22 22 24332 2 22333332 3
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
+++|++|.|+|.
T Consensus 238 ~g~Dvvid~~g~ 249 (363)
T 4dvj_A 238 GAPAFVFSTTHT 249 (363)
T ss_dssp CCEEEEEECSCH
T ss_pred CCceEEEECCCc
Confidence 479999999884
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.013 Score=54.20 Aligned_cols=120 Identities=17% Similarity=0.055 Sum_probs=68.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+-+++++.|+|+ |.+|.+++..|+..|. ..|++++++.++++-....+.... ..+.+...| .
T Consensus 6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~---~---------- 71 (326)
T 3vku_A 6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE---Y---------- 71 (326)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC---G----------
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc---H----------
Confidence 445678999996 9999999999999884 489999999877765555554321 123333221 1
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+.+...|+||.++|....+ ..+ -...++.|..- ++.+.+.+.+.. +++.++++|-...
T Consensus 72 -~a~~~aDiVvi~ag~~~kp----G~t---R~dL~~~N~~I----~~~i~~~i~~~~-p~a~ilvvtNPvd 129 (326)
T 3vku_A 72 -SDAKDADLVVITAGAPQKP----GET---RLDLVNKNLKI----LKSIVDPIVDSG-FNGIFLVAANPVD 129 (326)
T ss_dssp -GGGTTCSEEEECCCCC-----------------------C----HHHHHHHHHTTT-CCSEEEECSSSHH
T ss_pred -HHhcCCCEEEECCCCCCCC----Cch---HHHHHHHHHHH----HHHHHHHHHhcC-CceEEEEccCchH
Confidence 2234789999999974221 112 22334555544 444444444433 3578888876653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.011 Score=54.88 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
-.|.++||+|+ |++|...++.+...|+ +|+++++++++.+.+ +++. .. .+ .|..+.+..+.+.+ ..+
T Consensus 165 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~-~~lG---a~-~~--i~~~~~~~~~~~~~----~~g 231 (340)
T 3s2e_A 165 RPGQWVVISGI-GGLGHVAVQYARAMGL-RVAAVDIDDAKLNLA-RRLG---AE-VA--VNARDTDPAAWLQK----EIG 231 (340)
T ss_dssp CTTSEEEEECC-STTHHHHHHHHHHTTC-EEEEEESCHHHHHHH-HHTT---CS-EE--EETTTSCHHHHHHH----HHS
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHH-HHcC---CC-EE--EeCCCcCHHHHHHH----hCC
Confidence 35889999997 8999999999999997 999999998777654 3332 22 22 35444333333222 234
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 232 ~~d~vid~~g~ 242 (340)
T 3s2e_A 232 GAHGVLVTAVS 242 (340)
T ss_dssp SEEEEEESSCC
T ss_pred CCCEEEEeCCC
Confidence 79999999873
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0065 Score=57.20 Aligned_cols=78 Identities=24% Similarity=0.298 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh---c
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR---S 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~---~ 120 (358)
.|.++||+|+ |++|...++.+...|+..|+++++++++.+.+ +++. .. .+ .|.++.+. .+.+.+ .
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lG---a~-~v--i~~~~~~~----~~~i~~~~~~ 249 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEVG---AT-AT--VDPSAGDV----VEAIAGPVGL 249 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---CS-EE--ECTTSSCH----HHHHHSTTSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---CC-EE--ECCCCcCH----HHHHHhhhhc
Confidence 5889999998 99999999999999976899999988776544 3343 12 12 34444332 223332 1
Q ss_pred -CCCccEEEEcccc
Q 018331 121 -GRPLDVLVCNAAV 133 (358)
Q Consensus 121 -~~~iD~lv~~ag~ 133 (358)
.+++|++|.++|.
T Consensus 250 ~~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 250 VPGGVDVVIECAGV 263 (370)
T ss_dssp STTCEEEEEECSCC
T ss_pred cCCCCCEEEECCCC
Confidence 2479999999874
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.005 Score=57.63 Aligned_cols=77 Identities=18% Similarity=0.156 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCCCchHHHH-HHHH-HhCCCcEEEEEecChH---HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLAT-AKAL-AETGKWHIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 43 l~~k~~lITGas~gIG~ai-a~~L-a~~Ga~~Vi~~~r~~~---~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+++.++||+|| |++|... ++.+ ...|+.+|++++++++ +.+.+ +++. ...+ |..+.+ +.+ +.++
T Consensus 171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~-~~lG-----a~~v--~~~~~~-~~~-i~~~ 239 (357)
T 2b5w_A 171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDII-EELD-----ATYV--DSRQTP-VED-VPDV 239 (357)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHH-HHTT-----CEEE--ETTTSC-GGG-HHHH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHH-HHcC-----Cccc--CCCccC-HHH-HHHh
Confidence 33489999999 9999999 7777 6789745999999876 66554 3442 1223 554422 233 4444
Q ss_pred HhcCCCccEEEEcccc
Q 018331 118 RRSGRPLDVLVCNAAV 133 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~ 133 (358)
.+++|++|.++|.
T Consensus 240 ---~gg~Dvvid~~g~ 252 (357)
T 2b5w_A 240 ---YEQMDFIYEATGF 252 (357)
T ss_dssp ---SCCEEEEEECSCC
T ss_pred ---CCCCCEEEECCCC
Confidence 2379999999984
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.05 Score=50.62 Aligned_cols=122 Identities=11% Similarity=0.027 Sum_probs=69.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecChH--HHHHHHHHhcCC--CCceEEEEecCCCHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK------WHIIMACRDFL--KAERAAKSAGMA--KENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~~--~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~ 112 (358)
++.-++.|+||+|+||+.++..|+.... ..+.+++.++. .++-...++... ......+..+ +. ..
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~--~~---~~ 96 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTA--DP---RV 96 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEES--CH---HH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcC--Ch---HH
Confidence 4455799999999999999999987542 26888888652 233333333321 1111222221 22 11
Q ss_pred HHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 113 FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 113 ~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
. +..-|+||..||....+ .++.++ .++.|..-. +.+.+.+.+...++.+|+.+|-..
T Consensus 97 a-------~~~advVvi~aG~prkp----GmtR~D---Ll~~Na~I~----~~~~~~i~~~a~~~~~vlvvsNPv 153 (345)
T 4h7p_A 97 A-------FDGVAIAIMCGAFPRKA----GMERKD---LLEMNARIF----KEQGEAIAAVAASDCRVVVVGNPA 153 (345)
T ss_dssp H-------TTTCSEEEECCCCCCCT----TCCHHH---HHHHHHHHH----HHHHHHHHHHSCTTCEEEECSSSH
T ss_pred H-------hCCCCEEEECCCCCCCC----CCCHHH---HHHHhHHHH----HHHHHHHHhhccCceEEEEeCCCc
Confidence 1 34789999999985332 345444 355565544 444444443322235677776553
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0077 Score=56.69 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |+||..+++.+...|+.+|+++++++++.+.+. ++. .. .+ +|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~lG---a~-~v--i~~~~~~~~~~~~~~~~~~--~ 260 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EVG---AT-EC--VNPQDYKKPIQEVLTEMSN--G 260 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTT---CS-EE--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhC---Cc-eE--ecccccchhHHHHHHHHhC--C
Confidence 5789999995 999999999999999658999999887766553 332 22 22 34332 1223333333322 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 261 g~D~vid~~g~ 271 (374)
T 2jhf_A 261 GVDFSFEVIGR 271 (374)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEECCCC
Confidence 79999999985
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0021 Score=57.43 Aligned_cols=71 Identities=24% Similarity=0.327 Sum_probs=49.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++ +++|.|+ ||.|++++..|++.|+..|.++.|+.++++...+. +... +. +++.+.+.
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~-------~~~~--~~---~~~~~~~~------ 165 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALDFP-------VKIF--SL---DQLDEVVK------ 165 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSS-------CEEE--EG---GGHHHHHH------
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-------cccC--CH---HHHHhhhc------
Confidence 3577 8999987 99999999999999966899999998665543222 1111 22 22333332
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
..|+|||+...
T Consensus 166 -~aDiVInatp~ 176 (253)
T 3u62_A 166 -KAKSLFNTTSV 176 (253)
T ss_dssp -TCSEEEECSST
T ss_pred -CCCEEEECCCC
Confidence 58999998754
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0037 Score=58.98 Aligned_cols=80 Identities=23% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++++.+ +++. .. .+ .|..+ .+++.+.+.++.. +
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~lG---a~-~v--i~~~~~~~~~~~~i~~~~~--g 262 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKFG---VN-EF--VNPKDHDKPIQEVIVDLTD--G 262 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTTT---CC-EE--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---Cc-EE--EccccCchhHHHHHHHhcC--C
Confidence 5889999998 99999999999999976899999988776644 3332 22 22 33331 2233333333332 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 263 g~D~vid~~g~ 273 (378)
T 3uko_A 263 GVDYSFECIGN 273 (378)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999885
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.042 Score=50.75 Aligned_cols=118 Identities=14% Similarity=-0.028 Sum_probs=72.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++.|+|+ |.+|.+++..|+..|. ..|++++++.++++-...++... ...+.+...| . +
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~---~-----------~ 69 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT---Y-----------E 69 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC---G-----------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc---H-----------H
Confidence 457999996 9999999999999883 38999999987766544444321 1233333222 1 1
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.+..-|+||.++|....+ ..+. ...+..|..-...+.+.+ .+.. +++.++++|.....
T Consensus 70 a~~~aDvVvi~ag~p~kp----G~~R---~dL~~~N~~Iv~~i~~~I----~~~~-p~a~vlvvtNPvd~ 127 (326)
T 3pqe_A 70 DCKDADIVCICAGANQKP----GETR---LELVEKNLKIFKGIVSEV----MASG-FDGIFLVATNPVDI 127 (326)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHH----HHTT-CCSEEEECSSSHHH
T ss_pred HhCCCCEEEEecccCCCC----CccH---HHHHHHHHHHHHHHHHHH----HHhc-CCeEEEEcCChHHH
Confidence 234689999999964221 2232 233555554444444444 4332 24788888866543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.37 E-value=0.012 Score=55.37 Aligned_cols=74 Identities=20% Similarity=0.301 Sum_probs=53.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |++|...++.+...|+ .|+++++++++.+.+.+ +. .. .+ .|..+.+.+ +++. ++
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~-lG---a~-~v--i~~~~~~~~----~~~~---~g 257 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA-LG---AD-EV--VNSRNADEM----AAHL---KS 257 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-HT---CS-EE--EETTCHHHH----HTTT---TC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH-cC---Cc-EE--eccccHHHH----HHhh---cC
Confidence 5789999998 8999999999988997 79999998877765543 43 12 22 455554322 2222 47
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 258 ~Dvvid~~g~ 267 (369)
T 1uuf_A 258 FDFILNTVAA 267 (369)
T ss_dssp EEEEEECCSS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0083 Score=56.40 Aligned_cols=80 Identities=16% Similarity=0.121 Sum_probs=54.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |++|...++.+...|+..|+++++++++.+.+. ++.. . .+ .|..+ .+++.+.+.++.. +
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~lGa---~-~v--i~~~~~~~~~~~~v~~~~~--~ 259 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFGA---T-EC--INPQDFSKPIQEVLIEMTD--G 259 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHTC---S-EE--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcCC---c-eE--eccccccccHHHHHHHHhC--C
Confidence 5789999996 999999999988899658999999887776554 3431 1 22 34332 1223333333322 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 260 g~D~vid~~g~ 270 (373)
T 2fzw_A 260 GVDYSFECIGN 270 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCc
Confidence 79999999985
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0097 Score=56.01 Aligned_cols=80 Identities=16% Similarity=0.135 Sum_probs=54.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+. ++. .. .+ .|..+ .+++.+.+.++.. +
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a~-~v--i~~~~~~~~~~~~v~~~~~--~ 264 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-ALG---AT-DC--LNPRELDKPVQDVITELTA--G 264 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HTT---CS-EE--ECGGGCSSCHHHHHHHHHT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhC---Cc-EE--EccccccchHHHHHHHHhC--C
Confidence 5789999996 999999999998899758999999987766553 343 22 22 34332 1223333333332 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.++|.
T Consensus 265 g~Dvvid~~G~ 275 (376)
T 1e3i_A 265 GVDYSLDCAGT 275 (376)
T ss_dssp CBSEEEESSCC
T ss_pred CccEEEECCCC
Confidence 79999999985
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.014 Score=55.49 Aligned_cols=81 Identities=21% Similarity=0.319 Sum_probs=54.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
-.|.++||+|+ |++|...++.+...|+..|+++++++++.+.+ +++. .. .+ .|..+.+.. +.+.++. ...
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lG---a~-~v--i~~~~~~~~-~~i~~~t-~g~ 281 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELG---AD-HV--IDPTKENFV-EAVLDYT-NGL 281 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---CS-EE--ECTTTSCHH-HHHHHHT-TTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---CC-EE--EcCCCCCHH-HHHHHHh-CCC
Confidence 35889999998 99999999999899976899999998776654 3342 22 22 344433222 2222222 123
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 282 g~D~vid~~g~ 292 (404)
T 3ip1_A 282 GAKLFLEATGV 292 (404)
T ss_dssp CCSEEEECSSC
T ss_pred CCCEEEECCCC
Confidence 69999999985
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.023 Score=52.75 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC--CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAET--GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~--Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|.++||+|+ |+||...++.+... |+ +|+++++++++.+.+. ++. .. .+ .|..+. .+.++++.. .
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~-~lG---a~-~v--i~~~~~---~~~~~~~~~-g 236 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNI-TIVGISRSKKHRDFAL-ELG---AD-YV--SEMKDA---ESLINKLTD-G 236 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHH-HHT---CS-EE--ECHHHH---HHHHHHHHT-T
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHH-HhC---CC-EE--eccccc---hHHHHHhhc-C
Confidence 7899999999 99999999988888 97 8999999987766554 332 11 22 232220 123333332 2
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
.++|++|.++|.
T Consensus 237 ~g~D~vid~~g~ 248 (344)
T 2h6e_A 237 LGASIAIDLVGT 248 (344)
T ss_dssp CCEEEEEESSCC
T ss_pred CCccEEEECCCC
Confidence 379999999984
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0062 Score=57.01 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=53.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||...++.+...|+ +|+++++++++.+.+.+++. .. .+ .|..+.+.+. +..++
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lG---a~-~v--i~~~~~~~~~-------~~~~g 244 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLG---AD-DY--VIGSDQAKMS-------ELADS 244 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSC---CS-CE--EETTCHHHHH-------HSTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcC---Cc-ee--eccccHHHHH-------HhcCC
Confidence 6889999995 9999999999988997 89999998777665543443 22 12 3444443222 22247
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 245 ~D~vid~~g~ 254 (357)
T 2cf5_A 245 LDYVIDTVPV 254 (357)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCC
Confidence 9999999985
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0043 Score=56.22 Aligned_cols=47 Identities=15% Similarity=0.169 Sum_probs=40.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
.++++|+++|.|+ ||.|++++..|++.|+..|.++.|+.++++...+
T Consensus 118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 3578999999997 7999999999999997689999999877666543
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.013 Score=55.62 Aligned_cols=81 Identities=21% Similarity=0.218 Sum_probs=55.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |++|...++.+...|+..|+++++++++++.+ +++. . .. +|.++.+.+.+.+.++. ...+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a-~~lG---a--~~--i~~~~~~~~~~~v~~~t-~g~g 254 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHA-KAQG---F--EI--ADLSLDTPLHEQIAALL-GEPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTT---C--EE--EETTSSSCHHHHHHHHH-SSSC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHH-HHcC---C--cE--EccCCcchHHHHHHHHh-CCCC
Confidence 5889999995 99999999988889976899999998776655 3342 2 22 45544332222233222 1236
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|++|.++|..
T Consensus 255 ~Dvvid~~G~~ 265 (398)
T 1kol_A 255 VDCAVDAVGFE 265 (398)
T ss_dssp EEEEEECCCTT
T ss_pred CCEEEECCCCc
Confidence 99999999864
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0095 Score=55.30 Aligned_cols=59 Identities=25% Similarity=0.195 Sum_probs=44.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCCceEEEE
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKENYTIMH 101 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~i~~~~ 101 (358)
.+++++++|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+...+..+.+..
T Consensus 31 kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~ 108 (340)
T 3rui_A 31 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG 108 (340)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEE
T ss_pred HHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEE
Confidence 578889999987 89999999999999988899987642 455666666655444444333
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.007 Score=55.67 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=50.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|...++.+...|+ +|+.++++. +. ...+++. .. .+ .|..+.+.+. +...+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~~~~-~~-~~~~~lG---a~-~~--i~~~~~~~~~-------~~~~g 215 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTASKR-NH-AFLKALG---AE-QC--INYHEEDFLL-------AISTP 215 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEECHH-HH-HHHHHHT---CS-EE--EETTTSCHHH-------HCCSC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeccc-hH-HHHHHcC---CC-EE--EeCCCcchhh-------hhccC
Confidence 588999999999999999999999997 888887543 33 3334443 22 22 3444433111 22247
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 216 ~D~v~d~~g~ 225 (321)
T 3tqh_A 216 VDAVIDLVGG 225 (321)
T ss_dssp EEEEEESSCH
T ss_pred CCEEEECCCc
Confidence 9999999884
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.014 Score=55.15 Aligned_cols=82 Identities=16% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCCCeEEEEc-CCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITG-as~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
-.|.++||.| |+|++|...++.+...|+ +|+++++++++.+.+.+ +. .. .+ .|..+.+..+. +.++...
T Consensus 169 ~~g~~vlV~gag~G~vG~~a~q~a~~~Ga-~Vi~~~~~~~~~~~~~~-lG---a~-~~--~~~~~~~~~~~-v~~~t~~- 238 (379)
T 3iup_A 169 LEGHSALVHTAAASNLGQMLNQICLKDGI-KLVNIVRKQEQADLLKA-QG---AV-HV--CNAASPTFMQD-LTEALVS- 238 (379)
T ss_dssp HTTCSCEEESSTTSHHHHHHHHHHHHHTC-CEEEEESSHHHHHHHHH-TT---CS-CE--EETTSTTHHHH-HHHHHHH-
T ss_pred cCCCEEEEECCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHh-CC---Cc-EE--EeCCChHHHHH-HHHHhcC-
Confidence 3578899997 999999999999999997 89999999877665543 32 22 22 34444332222 2222221
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
.++|++|.|+|..
T Consensus 239 ~g~d~v~d~~g~~ 251 (379)
T 3iup_A 239 TGATIAFDATGGG 251 (379)
T ss_dssp HCCCEEEESCEEE
T ss_pred CCceEEEECCCch
Confidence 2699999999863
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.012 Score=56.20 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=38.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~ 86 (358)
.+.+++++|+|+ |.+|..+++.+...|+ .|++++++...++..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGA-IVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHH
Confidence 478999999996 9999999999999997 899999998776654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.031 Score=52.44 Aligned_cols=79 Identities=20% Similarity=0.238 Sum_probs=52.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
-.|.++||+||+|++|...++.+...|+ +|+.+. ++++.+. .+++. .. .+ .|..+.+ +.+.+.++. .+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~-~~~lG---a~-~v--i~~~~~~-~~~~v~~~t--~g 230 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDL-AKSRG---AE-EV--FDYRAPN-LAQTIRTYT--KN 230 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHH-HHHTT---CS-EE--EETTSTT-HHHHHHHHT--TT
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHH-HHHcC---Cc-EE--EECCCch-HHHHHHHHc--cC
Confidence 4688999999999999999999999997 888876 5555553 34443 22 22 3444433 222222222 24
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
++|++|.++|.
T Consensus 231 ~~d~v~d~~g~ 241 (371)
T 3gqv_A 231 NLRYALDCITN 241 (371)
T ss_dssp CCCEEEESSCS
T ss_pred CccEEEECCCc
Confidence 69999999985
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.013 Score=54.92 Aligned_cols=75 Identities=20% Similarity=0.248 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +. .. .+ .|..+.. ++.+++. ++
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~-lG---a~-~v--~~~~~~~---~~~~~~~---~~ 243 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK-MG---AD-HY--IATLEEG---DWGEKYF---DT 243 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH-HT---CS-EE--EEGGGTS---CHHHHSC---SC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH-cC---CC-EE--EcCcCch---HHHHHhh---cC
Confidence 5889999999 9999999999988997 89999998877665543 43 12 22 2333220 1122222 47
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 244 ~D~vid~~g~ 253 (360)
T 1piw_A 244 FDLIVVCASS 253 (360)
T ss_dssp EEEEEECCSC
T ss_pred CCEEEECCCC
Confidence 9999999986
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.013 Score=55.03 Aligned_cols=80 Identities=16% Similarity=0.133 Sum_probs=53.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+. ++. .. .+ .|..+ .+++.+.+.++.. +
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a~-~v--i~~~~~~~~~~~~i~~~t~--g 260 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-ELG---AT-EC--LNPKDYDKPIYEVICEKTN--G 260 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HTT---CS-EE--ECGGGCSSCHHHHHHHHTT--S
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcC---Cc-EE--EecccccchHHHHHHHHhC--C
Confidence 4789999995 999999999888889668999999887766553 342 22 22 23332 1123333333322 3
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.++|.
T Consensus 261 g~Dvvid~~g~ 271 (373)
T 1p0f_A 261 GVDYAVECAGR 271 (373)
T ss_dssp CBSEEEECSCC
T ss_pred CCCEEEECCCC
Confidence 79999999985
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.007 Score=56.36 Aligned_cols=69 Identities=20% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||...++.+...|+ +|+++++++++.+.+. ++. .. .++ ++.+.+. .+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~-~lG---a~-~v~----~~~~~~~----------~~ 234 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGA-EVSVFARNEHKKQDAL-SMG---VK-HFY----TDPKQCK----------EE 234 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHH-HTT---CS-EEE----SSGGGCC----------SC
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH-hcC---CC-eec----CCHHHHh----------cC
Confidence 5889999997 9999999999999997 9999999887776543 332 22 222 2322211 16
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 235 ~D~vid~~g~ 244 (348)
T 3two_A 235 LDFIISTIPT 244 (348)
T ss_dssp EEEEEECCCS
T ss_pred CCEEEECCCc
Confidence 9999999985
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.03 E-value=0.02 Score=53.70 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=52.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||...++.+...|+..|+++++++++.+.+. ++. .. .+ .|..+.+. .+.+.++. .++
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---a~-~v--i~~~~~~~-~~~~~~~~--~gg 258 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLG---AT-HV--INSKTQDP-VAAIKEIT--DGG 258 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHT---CS-EE--EETTTSCH-HHHHHHHT--TSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcC---CC-EE--ecCCccCH-HHHHHHhc--CCC
Confidence 5789999995 999999999888899757999999987766553 332 12 22 24333222 22222222 237
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 259 ~D~vid~~g~ 268 (371)
T 1f8f_A 259 VNFALESTGS 268 (371)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEECCCC
Confidence 9999999984
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.004 Score=56.24 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=38.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
++++++++|.|+ |++|++++..|++.|+ .|.+++|+.++.+...
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~-~V~v~~r~~~~~~~l~ 169 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGA-KVFLWNRTKEKAIKLA 169 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTC-EEEEECSSHHHHHHHT
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHH
Confidence 577899999996 8999999999999996 9999999986665543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.047 Score=50.50 Aligned_cols=81 Identities=22% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|.+++|+|+ |++|...++.+...|+..++++++++++.+.+ +++. .. +++ |..+.+ ..+..+.+. ..+
T Consensus 159 ~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~lG---a~-~~i--~~~~~~-~~~~~~~~~-~~~ 228 (346)
T 4a2c_A 159 CENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KSFG---AM-QTF--NSSEMS-APQMQSVLR-ELR 228 (346)
T ss_dssp CTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHTT---CS-EEE--ETTTSC-HHHHHHHHG-GGC
T ss_pred CCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HHcC---Ce-EEE--eCCCCC-HHHHHHhhc-ccC
Confidence 46889999987 99999999999999987788899988776544 3332 22 333 333322 222333333 335
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
..|+++.++|.
T Consensus 229 g~d~v~d~~G~ 239 (346)
T 4a2c_A 229 FNQLILETAGV 239 (346)
T ss_dssp SSEEEEECSCS
T ss_pred Ccccccccccc
Confidence 68999998874
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0061 Score=57.02 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.|.++||+||+|++|...++.+...|+ .++.+.++
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~ 201 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRD 201 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecC
Confidence 588999999999999999998888997 66665544
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.082 Score=48.07 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=69.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|+|+ |.+|.+++..|+..|. ..|++.+++++.++-...++.. ......+... ++.+ . +
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~----a-------~ 67 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--ADYS----L-------L 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SCGG----G-------G
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CCHH----H-------h
Confidence 4789999 9999999999999883 2899999998766522222211 1112222221 1111 1 2
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
..-|+||.++|....+ ..+..+ .+..|. .+++.+.+.+.+.. +++.++++|-...
T Consensus 68 ~~aDiVViaag~~~kp----G~~R~d---l~~~N~----~i~~~i~~~i~~~~-p~a~iivvsNPvd 122 (294)
T 1oju_A 68 KGSEIIVVTAGLARKP----GMTRLD---LAHKNA----GIIKDIAKKIVENA-PESKILVVTNPMD 122 (294)
T ss_dssp TTCSEEEECCCCCCCS----SCCHHH---HHHHHH----HHHHHHHHHHHTTS-TTCEEEECSSSHH
T ss_pred CCCCEEEECCCCCCCC----CCcHHH---HHHHHH----HHHHHHHHHHHhhC-CCeEEEEeCCcch
Confidence 3689999999975322 223322 344453 45555555555543 3578888886653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.03 Score=51.94 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=66.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
-.|.+++|+|+ |++|...++.+...|+.+|+++++++++.+.+. ++. .. .++ |..+ + ..+.+.++.. ..
T Consensus 170 ~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~lG---a~-~~i--~~~~-~-~~~~v~~~t~-g~ 238 (345)
T 3jv7_A 170 GPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EVG---AD-AAV--KSGA-G-AADAIRELTG-GQ 238 (345)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HTT---CS-EEE--ECST-T-HHHHHHHHHG-GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-HcC---CC-EEE--cCCC-c-HHHHHHHHhC-CC
Confidence 35889999998 999999988887774459999999987766553 332 22 222 2222 2 2222222222 23
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
++|++|.++|.. ...+.++..+.. +|+++.++...+
T Consensus 239 g~d~v~d~~G~~--------------------------~~~~~~~~~l~~----~G~iv~~G~~~~ 274 (345)
T 3jv7_A 239 GATAVFDFVGAQ--------------------------STIDTAQQVVAV----DGHISVVGIHAG 274 (345)
T ss_dssp CEEEEEESSCCH--------------------------HHHHHHHHHEEE----EEEEEECSCCTT
T ss_pred CCeEEEECCCCH--------------------------HHHHHHHHHHhc----CCEEEEECCCCC
Confidence 799999999852 123444555555 379998875543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=95.81 E-value=0.078 Score=49.06 Aligned_cols=120 Identities=11% Similarity=0.040 Sum_probs=76.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
...+.+.|+|+ |.+|.+++..|+..|. ..|++++++.++++-...++... ......+..+ +.+
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~--d~~---------- 83 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK--DYS---------- 83 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS--SGG----------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC--CHH----------
Confidence 45668999997 9999999999999983 48999999987776655555321 1111222221 211
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.+..-|+||.++|....+ .++. ...++.|..-...+.+.+..+ . +++.++++|-...
T Consensus 84 -~~~~aDiVvi~aG~~~kp----G~tR---~dL~~~N~~I~~~i~~~i~~~----~-p~a~vlvvtNPvd 140 (331)
T 4aj2_A 84 -VTANSKLVIITAGARQQE----GESR---LNLVQRNVNIFKFIIPNVVKY----S-PQCKLLIVSNPVD 140 (331)
T ss_dssp -GGTTEEEEEECCSCCCCT----TCCG---GGGHHHHHHHHHHHHHHHHHH----C-TTCEEEECSSSHH
T ss_pred -HhCCCCEEEEccCCCCCC----CccH---HHHHHHHHHHHHHHHHHHHHH----C-CCeEEEEecChHH
Confidence 134689999999975322 2232 344666666555566665554 1 2478888887654
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.027 Score=51.12 Aligned_cols=72 Identities=19% Similarity=0.251 Sum_probs=51.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++.|++++|.| .|+||+++++.|...|+ +|++++|+..+.+... .+ + +.++ +. +++.++
T Consensus 151 ~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~-~~---g--~~~~--~~---~~l~~~------- 210 (293)
T 3d4o_A 151 FTIHGANVAVLG-LGRVGMSVARKFAALGA-KVKVGARESDLLARIA-EM---G--MEPF--HI---SKAAQE------- 210 (293)
T ss_dssp SCSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HT---T--SEEE--EG---GGHHHH-------
T ss_pred CCCCCCEEEEEe-eCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH-HC---C--Ceec--Ch---hhHHHH-------
Confidence 468999999999 59999999999999996 9999999976654432 22 1 2222 21 122222
Q ss_pred CCCccEEEEccc
Q 018331 121 GRPLDVLVCNAA 132 (358)
Q Consensus 121 ~~~iD~lv~~ag 132 (358)
....|+|+++..
T Consensus 211 l~~aDvVi~~~p 222 (293)
T 3d4o_A 211 LRDVDVCINTIP 222 (293)
T ss_dssp TTTCSEEEECCS
T ss_pred hcCCCEEEECCC
Confidence 236899999875
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.092 Score=48.23 Aligned_cols=119 Identities=17% Similarity=0.130 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCc-EEEEEecC--hHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKW-HIIMACRD--FLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~-~Vi~~~r~--~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
++.+.+.|+|+ |.+|..++..|+..| . .|++++++ +..++-....+... .....+...+ +.
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g-~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d~-------- 73 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKE-LADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--DY-------- 73 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--CG--------
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--CH--------
Confidence 45678999997 999999999999999 6 89999998 44443322222110 0111111111 11
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+.+...|+||.++|....+ ..+. ...+..|..-.-.+.+.+..+ . +++.++++|-...
T Consensus 74 ---~a~~~aDvVIiaag~p~kp----g~~R---~dl~~~N~~i~~~i~~~i~~~----~-p~a~vlvvsNPvd 131 (315)
T 3tl2_A 74 ---ADTADSDVVVITAGIARKP----GMSR---DDLVATNSKIMKSITRDIAKH----S-PNAIIVVLTNPVD 131 (315)
T ss_dssp ---GGGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHH----C-TTCEEEECCSSHH
T ss_pred ---HHhCCCCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHh----C-CCeEEEECCChHH
Confidence 1234789999999975322 2233 334556665555555555544 2 2478888886543
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.034 Score=51.32 Aligned_cols=120 Identities=9% Similarity=0.027 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCc-EEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~-~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++.+.+.|+|+ |.+|.+++..|+..| . .|+++++++++++....++... .....+...+ +.
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~-~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~--d~---------- 70 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKE-LGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGAN--DY---------- 70 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTT-CCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEES--SG----------
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCC-CCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeC--CH----------
Confidence 45678999998 999999999999998 5 8999999876654333333211 1112222111 11
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
+.+..-|+||.++|....+ ..+. ...+..|..-...+.+.+..+ . +++.++++|-....
T Consensus 71 -~a~~~aDiVIiaag~p~k~----G~~R---~dl~~~N~~i~~~i~~~i~~~----~-p~a~iivvtNPvd~ 129 (324)
T 3gvi_A 71 -AAIEGADVVIVTAGVPRKP----GMSR---DDLLGINLKVMEQVGAGIKKY----A-PEAFVICITNPLDA 129 (324)
T ss_dssp -GGGTTCSEEEECCSCCCC------------CHHHHHHHHHHHHHHHHHHHH----C-TTCEEEECCSSHHH
T ss_pred -HHHCCCCEEEEccCcCCCC----CCCH---HHHHHhhHHHHHHHHHHHHHH----C-CCeEEEecCCCcHH
Confidence 1123689999999864221 1122 233445554444444444443 2 24788888876543
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.035 Score=52.67 Aligned_cols=81 Identities=19% Similarity=0.154 Sum_probs=54.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+. ++ +. .. +|..+.+.+.+.+.++.. ..+
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---Ga--~~--i~~~~~~~~~~~~~~~~~-g~g 254 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-DA---GF--ET--IDLRNSAPLRDQIDQILG-KPE 254 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-TT---TC--EE--EETTSSSCHHHHHHHHHS-SSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc---CC--cE--EcCCCcchHHHHHHHHhC-CCC
Confidence 5889999996 999999999888889658999999987765543 33 22 22 354442211222222221 226
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|++|.++|..
T Consensus 255 ~Dvvid~~g~~ 265 (398)
T 2dph_A 255 VDCGVDAVGFE 265 (398)
T ss_dssp EEEEEECSCTT
T ss_pred CCEEEECCCCc
Confidence 99999999864
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.77 E-value=0.033 Score=51.80 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc--C
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~--~ 121 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+ +++. .. .+ .|..+.+ +.+++.+. .
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lG---a~-~v--i~~~~~~----~~~~v~~~t~g 233 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEYG---AT-DI--INYKNGD----IVEQILKATDG 233 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHHT---CC-EE--ECGGGSC----HHHHHHHHTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhC---Cc-eE--EcCCCcC----HHHHHHHHcCC
Confidence 5889999985 99999999999889975799999988766544 3343 11 22 2333322 22233232 2
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
.++|++|.++|.
T Consensus 234 ~g~D~v~d~~g~ 245 (352)
T 3fpc_A 234 KGVDKVVIAGGD 245 (352)
T ss_dssp CCEEEEEECSSC
T ss_pred CCCCEEEECCCC
Confidence 369999999885
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.018 Score=49.30 Aligned_cols=42 Identities=33% Similarity=0.393 Sum_probs=35.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
+++|+||+|.+|.++++.|++.| +.|++++|+.+..+...+.
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g-~~V~~~~r~~~~~~~~~~~ 43 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAE 43 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHH
Confidence 58899999999999999999999 5999999998776655443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.022 Score=54.46 Aligned_cols=59 Identities=22% Similarity=0.250 Sum_probs=43.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~ 112 (358)
..++|.|. |-+|+.+++.|.+.| ..|++++++++..+...+. .+.++.+|.++.+.+.+
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g-~~vvvId~d~~~v~~~~~~------g~~vi~GDat~~~~L~~ 63 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSG-VKMVVLDHDPDHIETLRKF------GMKVFYGDATRMDLLES 63 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCHHHHHHHHHT------TCCCEESCTTCHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHhC------CCeEEEcCCCCHHHHHh
Confidence 35888886 889999999999999 5999999998777665431 23455566666554433
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=95.71 E-value=0.022 Score=56.71 Aligned_cols=92 Identities=22% Similarity=0.177 Sum_probs=58.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCCc--eEEE
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKEN--YTIM 100 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~~--i~~~ 100 (358)
.+++.+++|.|+ ||+|.++++.|+..|..++.+++.+. .+++.+.+.+...+.. +..+
T Consensus 323 kL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~ 401 (615)
T 4gsl_A 323 IIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 401 (615)
T ss_dssp HHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEe
Confidence 578899999987 79999999999999988999988753 4556666666554444 4444
Q ss_pred EecC-------CCHHHHHHHHHHHHhcCCCccEEEEccccc
Q 018331 101 HLDL-------ASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 101 ~~Dl-------~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~ 134 (358)
..++ .+.+...--.+.+.+.+...|+||.+....
T Consensus 402 ~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~ 442 (615)
T 4gsl_A 402 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR 442 (615)
T ss_dssp CCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSG
T ss_pred eccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCH
Confidence 4433 221110000111111123589999887654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.12 Score=46.47 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=34.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
+++.|.|+ |.+|..+|..|+..| +.|++.+|+++.++...+.
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G-~~V~l~d~~~~~~~~~~~~ 46 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHG-FAVTAYDINTDALDAAKKR 46 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEeCCHHHHHHHHHH
Confidence 56778865 889999999999999 5999999998777655543
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.012 Score=55.15 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=59.3
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCC--ceE
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKE--NYT 98 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~--~i~ 98 (358)
...|++++|+|.|+ ||+|.++++.|+..|..++.+++++. .+.+.+.+.+...+. ++.
T Consensus 113 q~~L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~ 191 (353)
T 3h5n_A 113 QDKLKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVS 191 (353)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEE
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEE
Confidence 45688999999987 89999999999999988999998752 244555555544333 456
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 99 ~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
.+..+++....+ .+ +...|+||.+..
T Consensus 192 ~~~~~i~~~~~~-------~~-~~~~DlVvd~~D 217 (353)
T 3h5n_A 192 EIALNINDYTDL-------HK-VPEADIWVVSAD 217 (353)
T ss_dssp EEECCCCSGGGG-------GG-SCCCSEEEECCC
T ss_pred EeecccCchhhh-------hH-hccCCEEEEecC
Confidence 666666654321 12 457899888764
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.03 Score=52.94 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=38.3
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
.+.+++++|+|+ |++|+.+++.+...|+ .|++++|+....+...
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~ 212 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVE 212 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 678999999996 9999999999999997 7999999876665543
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.14 Score=46.98 Aligned_cols=119 Identities=15% Similarity=0.041 Sum_probs=71.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-C-CcEEEEEecChHHHHHHHHHhcCCCCceEEEEe-cCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAET-G-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHL-DLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~-Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++.|+||+|.+|.+++..|+.+ + +..+++++.++ ..+-...++........+... .-.+.+ .+ ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~----~~-------~~ 69 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATP----AL-------EG 69 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHH----HH-------TT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHH----Hh-------CC
Confidence 5889999999999999999876 4 35899999986 333333344333222222221 101121 22 26
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.|++|.++|....+ .++. ...++.|..-...+.+.+..+- +++.++++|-....
T Consensus 70 aDivii~ag~~rkp----G~~R---~dll~~N~~I~~~i~~~i~~~~-----p~a~vlvvtNPvd~ 123 (312)
T 3hhp_A 70 ADVVLISAGVARKP----GMDR---SDLFNVNAGIVKNLVQQVAKTC-----PKACIGIITNPVNT 123 (312)
T ss_dssp CSEEEECCSCSCCT----TCCH---HHHHHHHHHHHHHHHHHHHHHC-----TTSEEEECSSCHHH
T ss_pred CCEEEEeCCCCCCC----CCCH---HHHHHHHHHHHHHHHHHHHHHC-----CCcEEEEecCcchh
Confidence 89999999975322 2333 3445667666666666665542 24788888765533
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.33 Score=44.01 Aligned_cols=115 Identities=12% Similarity=0.031 Sum_probs=70.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|+|+ |+||..++..|+.++ +..+++++.++...+-....+.. .+........+ +.+ .+
T Consensus 2 KV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~~-----------~~ 67 (294)
T 2x0j_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DYS-----------LL 67 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CGG-----------GG
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CHH-----------Hh
Confidence 3678895 999999999999887 46899999987655544333322 12223333221 111 12
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
..-|+||..||....+ .++..+ .++.|.. +++.+.+.+.+.. +++.++.+|-..
T Consensus 68 ~~aDvVvitAG~prkp----GmtR~d---Ll~~Na~----I~~~i~~~i~~~~-p~aivlvvsNPv 121 (294)
T 2x0j_A 68 KGSEIIVVTAGLARKP----GMTRLD---LAHKNAG----IIKDIAKKIVENA-PESKILVVTNPM 121 (294)
T ss_dssp TTCSEEEECCCCCCCS----SSCHHH---HHHHHHH----HHHHHHHHHHTTS-TTCEEEECSSSH
T ss_pred CCCCEEEEecCCCCCC----CCchHH---HHHHHHH----HHHHHHHHHHhcC-CceEEEEecCcc
Confidence 3689999999976332 334433 3455554 5555555555544 357888887664
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.13 Score=47.23 Aligned_cols=120 Identities=11% Similarity=0.043 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.+.+.|+|+ |.+|.+++..|+..|...|++++++++.++....++... .....+...+ +. +
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~--d~-----------~ 69 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTN--DY-----------K 69 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CG-----------G
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcC--CH-----------H
Confidence 4567889995 999999999999988228999999987665444444332 1122222111 11 1
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.+..-|+||.++|....+ ..+.. ..+..|..-...+.+.+..+ . +++.++++|-....
T Consensus 70 a~~~aDvVIi~ag~p~k~----G~~R~---dl~~~N~~i~~~i~~~i~~~----~-p~a~vivvtNPvd~ 127 (321)
T 3p7m_A 70 DLENSDVVIVTAGVPRKP----GMSRD---DLLGINIKVMQTVGEGIKHN----C-PNAFVICITNPLDI 127 (321)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCHH---HHHHHHHHHHHHHHHHHHHH----C-TTCEEEECCSSHHH
T ss_pred HHCCCCEEEEcCCcCCCC----CCCHH---HHHHHhHHHHHHHHHHHHHH----C-CCcEEEEecCchHH
Confidence 133689999999974322 22332 33455555555555555444 2 24788888765433
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.032 Score=52.36 Aligned_cols=47 Identities=17% Similarity=0.211 Sum_probs=40.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
+++||+++|.|. |.+|..+++.|.+.|+ +|++.+++...++...+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHc
Confidence 699999999986 8999999999999996 8889999987777665554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.064 Score=50.48 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=39.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
+.+.+++++|.|+ |.+|..+++.+...|+ +|++++|+...++.+.+
T Consensus 180 ~~v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 225 (381)
T 3p2y_A 180 GTVKPASALVLGV-GVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRS 225 (381)
T ss_dssp CEECCCEEEEESC-SHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHH
T ss_pred CCcCCCEEEEECc-hHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 3567899999999 8999999999999997 89999999877766544
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.018 Score=52.76 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=46.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|| |++|...++.+...|+ +|+.++ ++++.+.+. ++. . -.++ | | .++ + .++
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~-~lG---a-~~v~--~--d---~~~----v---~~g 199 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAA-KRG---V-RHLY--R--E---PSQ----V---TQK 199 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHH-HHT---E-EEEE--S--S---GGG----C---CSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHH-HcC---C-CEEE--c--C---HHH----h---CCC
Confidence 5889999999 9999999999989997 999998 766655543 342 1 1222 3 2 111 1 457
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 200 ~Dvv~d~~g~ 209 (315)
T 3goh_A 200 YFAIFDAVNS 209 (315)
T ss_dssp EEEEECC---
T ss_pred ccEEEECCCc
Confidence 9999999885
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.014 Score=53.74 Aligned_cols=82 Identities=18% Similarity=0.113 Sum_probs=54.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceE-EEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYT-IMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~-~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++.|++++|.|++.-+|+.+|+.|+..|+ +|.++.|+........+.+. ...+ ...+..++.+++.+.+.
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la---~~~~~~t~~~~t~~~~L~e~l~----- 244 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLK---LNKHHVEDLGEYSEDLLKKCSL----- 244 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSS---CCCCEEEEEEECCHHHHHHHHH-----
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHh---hhcccccccccccHhHHHHHhc-----
Confidence 79999999999998999999999999997 89998887322111111111 1111 11122244456666655
Q ss_pred CCCccEEEEccccc
Q 018331 121 GRPLDVLVCNAAVY 134 (358)
Q Consensus 121 ~~~iD~lv~~ag~~ 134 (358)
.-|+||.+.|..
T Consensus 245 --~ADIVIsAtg~p 256 (320)
T 1edz_A 245 --DSDVVITGVPSE 256 (320)
T ss_dssp --HCSEEEECCCCT
T ss_pred --cCCEEEECCCCC
Confidence 579999999864
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.23 Score=45.80 Aligned_cols=119 Identities=16% Similarity=0.048 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+..++.|+|| |.+|..++..|+..+ +..|++++.+.++++.....+... ...+.+.. | +.+
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~~~----------- 72 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--EYS----------- 72 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--CHH-----------
Confidence 3467999999 999999999999887 248999999987776655555332 12333332 2 111
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.+..-|+||..+|....+ ..+.. ..+..|..-...+.+.+..+ . +++.|+++|-....
T Consensus 73 a~~~aDvVii~ag~~~k~----g~~R~---dl~~~n~~i~~~i~~~i~~~----~-p~a~iiv~tNPv~~ 130 (326)
T 2zqz_A 73 DAKDADLVVITAGAPQKP----GETRL---DLVNKNLKILKSIVDPIVDS----G-FNGIFLVAANPVDI 130 (326)
T ss_dssp GGGGCSEEEECCCCC---------CHH---HHHHHHHHHHHHHHHHHHHH----T-CCSEEEECSSSHHH
T ss_pred HhCCCCEEEEcCCCCCCC----CCCHH---HHHHHHHHHHHHHHHHHHHH----C-CCeEEEEeCCcHHH
Confidence 123689999999874221 12322 23444554444444444443 2 35788888765543
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.06 Score=48.86 Aligned_cols=38 Identities=13% Similarity=0.206 Sum_probs=34.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
-+++||+++|.|+++-+|+.++..|+..|| +|.++.|.
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~ 198 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSG 198 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 468999999999999999999999999997 88888773
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.24 Score=44.87 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=34.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~ 86 (358)
+++.|.|+ |.+|.++|..|+..| +.|++++|+++.++..
T Consensus 16 ~~I~VIG~-G~mG~~iA~~la~~G-~~V~~~d~~~~~~~~~ 54 (302)
T 1f0y_A 16 KHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTEDILAKS 54 (302)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCC-CeEEEEECCHHHHHHH
Confidence 57888988 999999999999999 6999999998776643
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=95.01 E-value=0.044 Score=54.47 Aligned_cols=63 Identities=27% Similarity=0.224 Sum_probs=45.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-------------------hHHHHHHHHHhcCCCCc--eEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMAKEN--YTI 99 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~--i~~ 99 (358)
..+++++|+|.|+ ||+|.++++.|+..|..++.+++.+ ..+++.+.+.+...+.. +..
T Consensus 323 ~kL~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~ 401 (598)
T 3vh1_A 323 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG 401 (598)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence 4577889999975 7999999999999998889998654 14666666666654444 444
Q ss_pred EEecC
Q 018331 100 MHLDL 104 (358)
Q Consensus 100 ~~~Dl 104 (358)
+..++
T Consensus 402 ~~~~I 406 (598)
T 3vh1_A 402 VKLSI 406 (598)
T ss_dssp ECCCC
T ss_pred Eeccc
Confidence 44443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.065 Score=51.98 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=57.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.|+ |-+|+.+|+.|.+.| +.|++++++++.++.+.+.+ .+.++.+|-++++.++++- ....|+
T Consensus 5 ~iiI~G~-G~vG~~la~~L~~~~-~~v~vId~d~~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~Ag------i~~ad~ 71 (461)
T 4g65_A 5 KIIILGA-GQVGGTLAENLVGEN-NDITIVDKDGDRLRELQDKY-----DLRVVNGHASHPDVLHEAG------AQDADM 71 (461)
T ss_dssp EEEEECC-SHHHHHHHHHTCSTT-EEEEEEESCHHHHHHHHHHS-----SCEEEESCTTCHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHhc-----CcEEEEEcCCCHHHHHhcC------CCcCCE
Confidence 4777776 789999999999999 79999999998887776554 4678899999998766651 125788
Q ss_pred EEEccc
Q 018331 127 LVCNAA 132 (358)
Q Consensus 127 lv~~ag 132 (358)
+|...+
T Consensus 72 ~ia~t~ 77 (461)
T 4g65_A 72 LVAVTN 77 (461)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 887654
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.034 Score=51.37 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=56.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+.++|.|+ |.+|+.+++.|.++| . |++++++++..+ ..+ ..+.++.+|.++.+.++++ ...+.
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g-~-v~vid~~~~~~~-~~~------~~~~~i~gd~~~~~~L~~a------~i~~a 178 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSE-V-FVLAEDENVRKK-VLR------SGANFVHGDPTRVSDLEKA------NVRGA 178 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSC-E-EEEESCGGGHHH-HHH------TTCEEEESCTTSHHHHHHT------CSTTE
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCC-c-EEEEeCChhhhh-HHh------CCcEEEEeCCCCHHHHHhc------Chhhc
Confidence 457999996 999999999999999 6 999999987766 332 3578999999999876654 12367
Q ss_pred cEEEEccc
Q 018331 125 DVLVCNAA 132 (358)
Q Consensus 125 D~lv~~ag 132 (358)
|.+|.+.+
T Consensus 179 ~~vi~~~~ 186 (336)
T 1lnq_A 179 RAVIVDLE 186 (336)
T ss_dssp EEEEECCS
T ss_pred cEEEEcCC
Confidence 88887653
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.058 Score=51.60 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=52.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+-+.+|+++|.|+ |-+|+.+++.+.+.| +.|++++.+...... .+ .-..+..|..|.+.+.++++
T Consensus 31 ~~~~~~~IlIlG~-G~lg~~~~~aa~~lG-~~v~v~d~~~~~p~~---~~-----ad~~~~~~~~d~~~l~~~a~----- 95 (419)
T 4e4t_A 31 PILPGAWLGMVGG-GQLGRMFCFAAQSMG-YRVAVLDPDPASPAG---AV-----ADRHLRAAYDDEAALAELAG----- 95 (419)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCTTCHHH---HH-----SSEEECCCTTCHHHHHHHHH-----
T ss_pred cCCCCCEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCcCchh---hh-----CCEEEECCcCCHHHHHHHHh-----
Confidence 4578999999986 579999999999999 588888876432211 11 11355688999988888774
Q ss_pred CCCccEEE
Q 018331 121 GRPLDVLV 128 (358)
Q Consensus 121 ~~~iD~lv 128 (358)
++|+|+
T Consensus 96 --~~D~V~ 101 (419)
T 4e4t_A 96 --LCEAVS 101 (419)
T ss_dssp --HCSEEE
T ss_pred --cCCEEE
Confidence 588887
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.21 Score=45.86 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=69.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 46 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
..+.|+|| |.+|..++..|+..+ +..|++++++.++++.....+... ...+.+.. | +. +.+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~~-----------~a~ 70 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--EY-----------SDC 70 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--CG-----------GGG
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--CH-----------HHh
Confidence 47999999 999999999999887 248999999987777555544322 12233332 2 11 123
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..-|+||..+|....+ ..+. ...+..|.. +++.+.+.+.+.. +++.|+++|-....
T Consensus 71 ~~aDvVii~ag~~~~~----g~~R---~dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 126 (318)
T 1ez4_A 71 KDADLVVITAGAPQKP----GESR---LDLVNKNLN----ILSSIVKPVVDSG-FDGIFLVAANPVDI 126 (318)
T ss_dssp TTCSEEEECCCC-----------------CHHHHHH----HHHHHHHHHHHTT-CCSEEEECSSSHHH
T ss_pred CCCCEEEECCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhC-CCeEEEEeCCcHHH
Confidence 4789999999875322 1121 123344444 4444455444443 35788888765543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.14 Score=48.62 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=39.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
+.+.+.+++|.|+ |.+|..+++.+...|+ +|++++++...++.+.+
T Consensus 186 g~v~~~kV~ViG~-G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~ 231 (405)
T 4dio_A 186 GTVPAAKIFVMGA-GVAGLQAIATARRLGA-VVSATDVRPAAKEQVAS 231 (405)
T ss_dssp EEECCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHH
T ss_pred CCcCCCEEEEECC-cHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence 3467889999999 8999999999999997 89999999877665543
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.061 Score=48.91 Aligned_cols=73 Identities=15% Similarity=0.285 Sum_probs=51.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++.+++++|.|+ |+||+++++.|...|+ +|++++|+.++.+...+ . + ...+ +. .++.++
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~-~---g--~~~~--~~---~~l~~~------- 212 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGA-NVKVGARSSAHLARITE-M---G--LVPF--HT---DELKEH------- 212 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---T--CEEE--EG---GGHHHH-------
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH-C---C--CeEE--ch---hhHHHH-------
Confidence 4689999999996 9999999999999996 99999999765544322 1 1 2222 11 122222
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
....|+||++...
T Consensus 213 l~~aDvVi~~~p~ 225 (300)
T 2rir_A 213 VKDIDICINTIPS 225 (300)
T ss_dssp STTCSEEEECCSS
T ss_pred hhCCCEEEECCCh
Confidence 2368999999875
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=94.68 E-value=0.05 Score=50.36 Aligned_cols=121 Identities=11% Similarity=-0.043 Sum_probs=67.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC------CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~------~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++.|+|| |.+|.+++..|+..|...|++++++++.++.....+.. ...++... ++.+ +.++
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~---ea~~---- 77 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSYE---AALT---- 77 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSHH---HHHT----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCHH---HHhC----
Confidence 47999998 99999999999999932799999998666553322211 11222211 2222 1222
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.-|+||.++|...... . +.+.-.-...+..|..-...+++.+.++. +++.++++|-..+
T Consensus 78 ---~aDiVi~a~g~p~~~g-~-~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-----p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 78 ---GADCVIVTAGLTKVPG-K-PDSEWSRNDLLPFNSKIIREIGQNIKKYC-----PKTFIIVVTNPLD 136 (331)
T ss_dssp ---TCSEEEECCSCSSCTT-C-CGGGCCGGGGHHHHHHHHHHHHHHHHHHC-----TTCEEEECCSSHH
T ss_pred ---CCCEEEEccCCCCCCC-c-ccCCCCHHHHHHHHHHHHHHHHHHHHHHC-----CCcEEEEEcCchH
Confidence 6899999998643211 0 00000012223444444444555554442 2367776655443
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.67 E-value=0.31 Score=44.38 Aligned_cols=113 Identities=17% Similarity=0.102 Sum_probs=64.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc--EEEEEecChHHHHHHHHHhcCCC---CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGKW--HIIMACRDFLKAERAAKSAGMAK---ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~--~Vi~~~r~~~~~~~~~~~~~~~~---~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++.|+|| |.+|..++..|+..| . .|++++++++.++.....+.... ....+.. + +.+ .+
T Consensus 2 kI~VIGa-G~vG~~la~~la~~g-~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~--~~~-----------a~ 65 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLRG-SCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-G--GHS-----------EL 65 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-E--CGG-----------GG
T ss_pred EEEEECC-CHHHHHHHHHHHhCC-CCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-C--CHH-----------Hh
Confidence 5889998 999999999999998 5 89999999876654444443221 1222221 1 111 12
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...|+||.++|...... .+ -...+..|..-...+++.+.++ . +++.++++|-..
T Consensus 66 ~~aDvVIi~~~~~~~~g----~~---r~dl~~~n~~i~~~i~~~i~~~-~----p~~~vi~~tNP~ 119 (304)
T 2v6b_A 66 ADAQVVILTAGANQKPG----ES---RLDLLEKNADIFRELVPQITRA-A----PDAVLLVTSNPV 119 (304)
T ss_dssp TTCSEEEECC-------------------CHHHHHHHHHHHHHHHHHH-C----SSSEEEECSSSH
T ss_pred CCCCEEEEcCCCCCCCC----Cc---HHHHHHhHHHHHHHHHHHHHHh-C----CCeEEEEecCch
Confidence 36899999998643211 11 1223455555555555655554 2 236777665444
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.18 Score=45.25 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=36.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
+++.|.|++|.+|.++++.|++.| +.|++++|+++..+...+
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g-~~V~~~~r~~~~~~~~~~ 53 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSA-HHLAAIEIAPEGRDRLQG 53 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSS-SEEEEECCSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHh
Confidence 479999999999999999999999 699999999877665543
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.036 Score=50.76 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=36.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
|+ +||+||+|++|...++.+...|+ +|+++++++++.+.+.+
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~ 189 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKS 189 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHh
Confidence 45 99999999999999999999997 99999998877766543
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.041 Score=51.27 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=53.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-------------------hHHHHHHHHHhcCCCCc--eEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-------------------FLKAERAAKSAGMAKEN--YTI 99 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-------------------~~~~~~~~~~~~~~~~~--i~~ 99 (358)
..|++.+|+|.|+ ||+|.++++.|+..|..++.+++.+ ..+++.+.+.+...+.. +..
T Consensus 32 ~~L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~ 110 (346)
T 1y8q_A 32 KRLRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKV 110 (346)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEE
T ss_pred HHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEE
Confidence 4678889999985 7999999999999998789888532 13556666666554343 444
Q ss_pred EEecCCCHHHHHHHHHHHHhcCCCccEEEEcc
Q 018331 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131 (358)
Q Consensus 100 ~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~a 131 (358)
+..++++ ...+++ ...|+||.+.
T Consensus 111 ~~~~~~~--~~~~~~-------~~~dvVv~~~ 133 (346)
T 1y8q_A 111 DTEDIEK--KPESFF-------TQFDAVCLTC 133 (346)
T ss_dssp ECSCGGG--CCHHHH-------TTCSEEEEES
T ss_pred EecccCc--chHHHh-------cCCCEEEEcC
Confidence 4444432 112222 3678888764
|
| >4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.055 Score=50.23 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|...++.+...|+..|+.+++ ..+.+.+. +. .. .++ | .+.+ +.+.+.++. .+.
T Consensus 142 ~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~-~~~~~~~~--~g---a~-~~~--~-~~~~-~~~~~~~~~--~~g 208 (349)
T 4a27_A 142 EGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAIK--DS---VT-HLF--D-RNAD-YVQEVKRIS--AEG 208 (349)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC-GGGHHHHG--GG---SS-EEE--E-TTSC-HHHHHHHHC--TTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC-HHHHHHHH--cC---Cc-EEE--c-CCcc-HHHHHHHhc--CCC
Confidence 58899999999999999888777676458888774 34444332 22 22 222 3 2222 222233322 347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.|.|.
T Consensus 209 ~Dvv~d~~g~ 218 (349)
T 4a27_A 209 VDIVLDCLCG 218 (349)
T ss_dssp EEEEEEECC-
T ss_pred ceEEEECCCc
Confidence 9999999985
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.14 Score=47.18 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=49.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
-.|.++||+|+ |++|...+..+...|+.+|+++++++++++.+. ++. .. .+ .|..+.+..+++ .++. ...
T Consensus 162 ~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~G---a~-~~--i~~~~~~~~~~v-~~~t-~g~ 231 (348)
T 4eez_A 162 KPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KIG---AD-VT--INSGDVNPVDEI-KKIT-GGL 231 (348)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HTT---CS-EE--EEC-CCCHHHHH-HHHT-TSS
T ss_pred CCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hcC---Ce-EE--EeCCCCCHHHHh-hhhc-CCC
Confidence 35889999987 788887787777665469999999987765443 222 22 22 344443333222 2221 123
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|.++.+++.
T Consensus 232 g~d~~~~~~~~ 242 (348)
T 4eez_A 232 GVQSAIVCAVA 242 (348)
T ss_dssp CEEEEEECCSC
T ss_pred CceEEEEeccC
Confidence 58888888764
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.04 Score=49.64 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=34.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.+++||+++|.|+++-+|+.++..|+..|| +|.++.|+
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~ 193 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIK 193 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 468999999999999999999999999998 88887764
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.32 Score=44.56 Aligned_cols=118 Identities=12% Similarity=0.083 Sum_probs=69.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+...+.|+|| |.+|..++..|+..|. ..|++++.++++++.....+.. .+..+.+.. | +.
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~~----------- 69 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--EY----------- 69 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--CG-----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--CH-----------
Confidence 3457999999 9999999999998873 4899999987665543333221 112333332 2 11
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
+.+..-|+||.++|..... ..+.. ..+..|.. +++.+.+.+.+.. +++.++++|-...
T Consensus 70 ~a~~~aDvVvi~ag~~~~~----g~~r~---dl~~~n~~----i~~~i~~~i~~~~-p~a~viv~tNPv~ 127 (317)
T 3d0o_A 70 SDCHDADLVVICAGAAQKP----GETRL---DLVSKNLK----IFKSIVGEVMASK-FDGIFLVATNPVD 127 (317)
T ss_dssp GGGTTCSEEEECCCCCCCT----TCCHH---HHHHHHHH----HHHHHHHHHHHTT-CCSEEEECSSSHH
T ss_pred HHhCCCCEEEECCCCCCCC----CCcHH---HHHHHHHH----HHHHHHHHHHHhC-CCcEEEEecCcHH
Confidence 1133789999999875322 12322 23344444 4444444444442 3578888765543
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.023 Score=52.25 Aligned_cols=40 Identities=25% Similarity=0.393 Sum_probs=34.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
++||+||+|++|..+++.+...|+ +|+++++++++.+.+.
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~ 192 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLK 192 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHH
Confidence 799999999999999999999997 7999999876665543
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.67 Score=43.45 Aligned_cols=121 Identities=12% Similarity=0.007 Sum_probs=67.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCc-E---EEEEec----ChHHHHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKW-H---IIMACR----DFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~-~---Vi~~~r----~~~~~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.++.|+||+|.||.+++..|+..+.. . |++.+. +.+.++-...++..... -..-+ .+... .
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v--~i~~~-~------- 102 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREV--SIGID-P------- 102 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEE--EEESC-H-------
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCc--EEecC-C-------
Confidence 46999999999999999999987732 1 555443 33344444444543221 11111 11211 1
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.+.+...|+||..||....+ .++. ...++.|.. +++...+.+.+...+++.++++|....
T Consensus 103 -y~~~~daDvVVitag~prkp----G~tR---~DLl~~N~~----I~k~i~~~i~~~a~p~~ivlVvsNPvD 162 (375)
T 7mdh_A 103 -YEVFEDVDWALLIGAKPRGP----GMER---AALLDINGQ----IFADQGKALNAVASKNVKVLVVGNPCN 162 (375)
T ss_dssp -HHHTTTCSEEEECCCCCCCT----TCCH---HHHHHHHHH----HHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred -HHHhCCCCEEEEcCCCCCCC----CCCH---HHHHHHHHH----HHHHHHHHHHHhcCCCeEEEEecCchh
Confidence 11234789999999864222 2333 334555554 444444444442112478888886643
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.47 Score=43.42 Aligned_cols=116 Identities=20% Similarity=0.145 Sum_probs=66.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++.|+|+ |.+|..++..|+..| +..|++++++++.++.....+.. .+..+.+.. | +. +
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~~-----------~ 70 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--DY-----------D 70 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--CG-----------G
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--cH-----------H
Confidence 357999999 999999999999887 34899999997655533333321 111333332 1 11 1
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.+...|+||.++|...... .+. ...+..|.. +.+.+.+.+.+.. +++.++++|-..
T Consensus 71 al~~aDvViia~~~~~~~g----~~r---~dl~~~n~~----i~~~i~~~i~~~~-p~a~~iv~tNPv 126 (316)
T 1ldn_A 71 DCRDADLVVICAGANQKPG----ETR---LDLVDKNIA----IFRSIVESVMASG-FQGLFLVATNPV 126 (316)
T ss_dssp GTTTCSEEEECCSCCCCTT----TCS---GGGHHHHHH----HHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred HhCCCCEEEEcCCCCCCCC----CCH---HHHHHcChH----HHHHHHHHHHHHC-CCCEEEEeCCch
Confidence 2347899999998753321 122 122344433 3444444443332 246777765543
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.5 Score=43.12 Aligned_cols=116 Identities=21% Similarity=0.093 Sum_probs=71.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++.|+|| |.+|..++..|+..+ +..|++++.+.++++.....+... ...+.+.. | +.+ .+.
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~~~-----------a~~ 66 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--SYG-----------DLE 66 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--CGG-----------GGT
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--CHH-----------HhC
Confidence 5889998 999999999999887 348999999987777555555332 12223322 2 221 133
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.-|+||..+|....+ ..+.. ..+..|..-...+.+.+..+ . +++.|+++|-....
T Consensus 67 ~aD~Vii~ag~~~~~----g~~r~---dl~~~n~~i~~~i~~~i~~~----~-p~a~iiv~tNPv~~ 121 (310)
T 2xxj_A 67 GARAVVLAAGVAQRP----GETRL---QLLDRNAQVFAQVVPRVLEA----A-PEAVLLVATNPVDV 121 (310)
T ss_dssp TEEEEEECCCCCCCT----TCCHH---HHHHHHHHHHHHHHHHHHHH----C-TTCEEEECSSSHHH
T ss_pred CCCEEEECCCCCCCC----CcCHH---HHHHhhHHHHHHHHHHHHHH----C-CCcEEEEecCchHH
Confidence 789999999975322 22332 23444554444444444443 2 24788888765543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.29 Score=45.11 Aligned_cols=117 Identities=10% Similarity=-0.008 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---CCceEEE-EecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIM-HLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~-~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+++.|+|+ |.+|..++..|+..|. ..|++++.+++.++-....+... .....+. ..|..
T Consensus 21 ~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~-------------- 85 (330)
T 3ldh_A 21 YNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS-------------- 85 (330)
T ss_dssp CCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--------------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--------------
Confidence 457999999 9999999999999983 38999999987666544433221 1111222 12221
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.+..-|+||.++|....+ .++. ...+..|..-.-.+.+.+..+ . +++.++++|-...
T Consensus 86 ~~~daDiVIitaG~p~kp----G~tR---~dll~~N~~I~k~i~~~I~k~----~-P~a~ilvvtNPvd 142 (330)
T 3ldh_A 86 VSAGSKLVVITAGARQQE----GESR---LNLVQRNVNIFKFIIPNIVKH----S-PDCLKELHPELGT 142 (330)
T ss_dssp SCSSCSEEEECCSCCCCS----SCCT---TGGGHHHHHHHHHHHHHHHHH----C-TTCEEEECSSSHH
T ss_pred HhCCCCEEEEeCCCCCCC----CCCH---HHHHHhhHHHHHHHHHHHHhh----C-CCceEEeCCCccH
Confidence 134789999999975332 1222 233455555545555555544 1 2478888886653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.12 Score=44.96 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=42.2
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCC
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLA 105 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~ 105 (358)
-..+++||.+||.|| |.+|...++.|++.|| .|.+++.+.. .++...+ ..++.++..+..
T Consensus 25 ifl~L~gk~VLVVGg-G~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~-----~~~i~~i~~~~~ 85 (223)
T 3dfz_A 25 VMLDLKGRSVLVVGG-GTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEA-----KGQLRVKRKKVG 85 (223)
T ss_dssp EEECCTTCCEEEECC-SHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHH-----TTSCEEECSCCC
T ss_pred cEEEcCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHH-----cCCcEEEECCCC
Confidence 335899999999997 5899999999999997 7777777642 2333322 134566654443
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.32 Score=44.33 Aligned_cols=116 Identities=17% Similarity=0.091 Sum_probs=64.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++.|+|| |.+|..++..|+..|...|+++++++++++.....+... .....+... ++.+ .+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~-----------a~ 68 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NNYA-----------DT 68 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SCGG-----------GG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CCHH-----------HH
Confidence 46899999 999999999999999426999999876665444444321 111111110 1111 12
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...|+||.++|....+. .+.. ..+..|. .+.+.+.+.+.+.. +++.++++|-..
T Consensus 69 ~~aD~Vi~a~g~p~~~g----~~r~---dl~~~n~----~i~~~i~~~i~~~~-p~a~vi~~tNPv 122 (309)
T 1ur5_A 69 ANSDVIVVTSGAPRKPG----MSRE---DLIKVNA----DITRACISQAAPLS-PNAVIIMVNNPL 122 (309)
T ss_dssp TTCSEEEECCCC------------C---HHHHHHH----HHHHHHHHHHGGGC-TTCEEEECCSSH
T ss_pred CCCCEEEEcCCCCCCCC----CCHH---HHHHHHH----HHHHHHHHHHHhhC-CCeEEEEcCCch
Confidence 36899999998743211 1111 1222333 34455555555443 345666665443
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=94.16 E-value=0.059 Score=54.14 Aligned_cols=84 Identities=26% Similarity=0.265 Sum_probs=54.5
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCCCC--ceE
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMAKE--NYT 98 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~~~--~i~ 98 (358)
...|.+.+++|.|+ ||+|.++++.|+..|..++.+++.+. .+++.+.+.+...+. ++.
T Consensus 12 Q~kL~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~ 90 (640)
T 1y8q_B 12 AEAVAGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIV 90 (640)
T ss_dssp HHHHHHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEE
T ss_pred HHHHhcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEE
Confidence 34577889999987 89999999999999987899987642 234444555544333 455
Q ss_pred EEEecCCCHHHHHHHHHHHHhcCCCccEEEEcc
Q 018331 99 IMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNA 131 (358)
Q Consensus 99 ~~~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~a 131 (358)
.+..+++.......++ ..+|+||++.
T Consensus 91 a~~~~i~~~~~~~~~~-------~~~DlVvda~ 116 (640)
T 1y8q_B 91 AYHDSIMNPDYNVEFF-------RQFILVMNAL 116 (640)
T ss_dssp EEESCTTSTTSCHHHH-------TTCSEEEECC
T ss_pred EEecccchhhhhHhhh-------cCCCEEEECC
Confidence 5555554322111222 3578887764
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.041 Score=52.92 Aligned_cols=81 Identities=28% Similarity=0.331 Sum_probs=53.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-------------------HHHHHHHHHhcCC--CCceEEE
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-------------------LKAERAAKSAGMA--KENYTIM 100 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-------------------~~~~~~~~~~~~~--~~~i~~~ 100 (358)
.|++.+++|.|+ ||+|.++++.|+..|..++.+++.+. .+++.+.+.+.+. ..++..+
T Consensus 37 ~L~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~ 115 (434)
T 1tt5_B 37 LLDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH 115 (434)
T ss_dssp HHHTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred HhcCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEE
Confidence 357888999987 89999999999999987888886431 3455555555442 3345555
Q ss_pred EecCCCHHHHHHHHHHHHhcCCCccEEEEccc
Q 018331 101 HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 101 ~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag 132 (358)
..++.+.. .+++ ...|+||.+..
T Consensus 116 ~~~i~~~~--~~~~-------~~~DlVi~~~D 138 (434)
T 1tt5_B 116 FNKIQDFN--DTFY-------RQFHIIVCGLD 138 (434)
T ss_dssp ESCGGGBC--HHHH-------TTCSEEEECCS
T ss_pred ecccchhh--HHHh-------cCCCEEEECCC
Confidence 55554321 1222 25788888743
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.24 Score=45.49 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=67.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCC---ceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKE---NYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~---~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++.|+|+ |.+|..++..|+..|. ..|++++.++++++-....+..... .+.+. . .+ .+.+
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~-~--~~-----------~~a~ 72 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY-A--GD-----------YSDV 72 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C-----------GGGG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEE-E--CC-----------HHHh
Confidence 46888998 9999999999999882 3899999987665544444433211 22211 1 11 1123
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
..-|+||.++|..... ..+. ...+..|..-...+++.+.++- +++.|+++|-..+
T Consensus 73 ~~aDvVii~~g~p~k~----g~~r---~dl~~~n~~i~~~i~~~i~~~~-----p~a~viv~tNPv~ 127 (318)
T 1y6j_A 73 KDCDVIVVTAGANRKP----GETR---LDLAKKNVMIAKEVTQNIMKYY-----NHGVILVVSNPVD 127 (318)
T ss_dssp TTCSEEEECCCC----------CH---HHHHHHHHHHHHHHHHHHHHHC-----CSCEEEECSSSHH
T ss_pred CCCCEEEEcCCCCCCC----CcCH---HHHHHhhHHHHHHHHHHHHHhC-----CCcEEEEecCcHH
Confidence 4789999999874221 1222 2345566665566666665551 2467877765543
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.0092 Score=55.81 Aligned_cols=39 Identities=26% Similarity=0.364 Sum_probs=34.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 82 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~ 82 (358)
+++||++.|.| .|.||+.+++.|.+.|+ +|++.+++...
T Consensus 172 ~L~GktV~I~G-~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~ 210 (355)
T 1c1d_A 172 SLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTER 210 (355)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred CCCCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEeCCccH
Confidence 68999999996 69999999999999997 88888888654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.083 Score=46.99 Aligned_cols=69 Identities=29% Similarity=0.334 Sum_probs=51.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++| +++|.|+ |++|+++++.|.+.|+ .|.+++|+.++.+...+.+.. . . .+.+ ++
T Consensus 114 ~l~~-~v~iiG~-G~~g~~~a~~l~~~g~-~v~v~~r~~~~~~~l~~~~~~-----~---~--~~~~---~~-------- 169 (263)
T 2d5c_A 114 PLKG-PALVLGA-GGAGRAVAFALREAGL-EVWVWNRTPQRALALAEEFGL-----R---A--VPLE---KA-------- 169 (263)
T ss_dssp CCCS-CEEEECC-SHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHTC-----E---E--CCGG---GG--------
T ss_pred CCCC-eEEEECC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcc-----c---h--hhHh---hc--------
Confidence 5788 8999996 8899999999999996 899999998777766655432 1 1 1221 11
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+||++.+..
T Consensus 170 ~~~Divi~~tp~~ 182 (263)
T 2d5c_A 170 REARLLVNATRVG 182 (263)
T ss_dssp GGCSEEEECSSTT
T ss_pred cCCCEEEEccCCC
Confidence 2589999998764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.31 Score=44.68 Aligned_cols=117 Identities=13% Similarity=0.117 Sum_probs=68.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|+|+ |.+|..++..|+..|. ..|+++++++++++-...++... .....+...|. . +.+
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~--~-----------~a~ 67 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND--Y-----------GPT 67 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS--S-----------GGG
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC--H-----------HHh
Confidence 4788996 9999999999999883 38999999986655433333221 11222222221 1 123
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
..-|++|.++|....+ .++. ...+..|. .+++.+.+.+.+.. +++.++++|-....
T Consensus 68 ~~aDvVii~ag~~~kp----G~~R---~dl~~~N~----~i~~~i~~~i~~~~-p~a~vivvtNPvd~ 123 (314)
T 3nep_X 68 EDSDVCIITAGLPRSP----GMSR---DDLLAKNT----EIVGGVTEQFVEGS-PDSTIIVVANPLDV 123 (314)
T ss_dssp TTCSEEEECCCC-----------C---HHHHHHHH----HHHHHHHHHHHTTC-TTCEEEECCSSHHH
T ss_pred CCCCEEEECCCCCCCC----CCCH---HHHHHhhH----HHHHHHHHHHHHhC-CCcEEEecCCchhH
Confidence 4689999999975322 1122 23344454 44555555555543 35788888876533
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.32 Score=42.95 Aligned_cols=88 Identities=16% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-----C---CCceEEEEecCCCHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----A---KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-----~---~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+.++.|.|+ |.+|..++..|++.|...|.+++|+++..+...+.+.- . -....++-.- .....+.+++++
T Consensus 10 ~m~i~iiG~-G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~a-v~~~~~~~v~~~ 87 (266)
T 3d1l_A 10 DTPIVLIGA-GNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVS-LKDSAFAELLQG 87 (266)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEEC-CCHHHHHHHHHH
T ss_pred CCeEEEEcC-CHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEe-cCHHHHHHHHHH
Confidence 446888986 99999999999999942388999998877766654321 0 0111222222 233456777777
Q ss_pred HHhcCCCccEEEEccccc
Q 018331 117 FRRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~ 134 (358)
+....++=.+||++++..
T Consensus 88 l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 88 IVEGKREEALMVHTAGSI 105 (266)
T ss_dssp HHTTCCTTCEEEECCTTS
T ss_pred HHhhcCCCcEEEECCCCC
Confidence 765443334677777654
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.09 Score=61.19 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc--C
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~--~ 121 (358)
.|.++||.||+||+|.+.++.....|+ .|++++++.++.+.+.+.+...+.. ++ .|..+.+ +.+.+.+. .
T Consensus 1667 ~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~-~v--~~~~~~~----~~~~i~~~t~g 1738 (2512)
T 2vz8_A 1667 PGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDET-CF--ANSRDTS----FEQHVLRHTAG 1738 (2512)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCST-TE--EESSSSH----HHHHHHHTTTS
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCce-EE--ecCCCHH----HHHHHHHhcCC
Confidence 588999999999999999998888997 8999999887766665543222222 12 2333332 23333332 2
Q ss_pred CCccEEEEccc
Q 018331 122 RPLDVLVCNAA 132 (358)
Q Consensus 122 ~~iD~lv~~ag 132 (358)
.++|+||++.|
T Consensus 1739 ~GvDvVld~~g 1749 (2512)
T 2vz8_A 1739 KGVDLVLNSLA 1749 (2512)
T ss_dssp CCEEEEEECCC
T ss_pred CCceEEEECCC
Confidence 36999999875
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.097 Score=46.89 Aligned_cols=36 Identities=14% Similarity=0.166 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
++||+++|.|+++-+|+.++..|+..|| +|.++.++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 8999999999999999999999999997 88887653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.33 Score=44.29 Aligned_cols=116 Identities=21% Similarity=0.177 Sum_probs=67.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.|+|| |.+|..++..|+..|...|+++++++++++-...++... .....+... .+.+ .+..
T Consensus 2 I~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d~~-----------a~~~ 67 (308)
T 2d4a_B 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS--NSYE-----------DMRG 67 (308)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE--SCGG-----------GGTT
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC--CCHH-----------HhCC
Confidence 778998 999999999999888425999999976665444443221 112222221 1111 1336
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGN 189 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~ 189 (358)
.|+||..+|....+ ..+.. ..+..|.. +.+.+.+.+.+.. +++.++++|-....
T Consensus 68 aD~Vi~~ag~~~k~----G~~r~---dl~~~n~~----i~~~i~~~i~~~~-p~a~iiv~tNPv~~ 121 (308)
T 2d4a_B 68 SDIVLVTAGIGRKP----GMTRE---QLLEANAN----TMADLAEKIKAYA-KDAIVVITTNPVDA 121 (308)
T ss_dssp CSEEEECCSCCCCS----SCCTH---HHHHHHHH----HHHHHHHHHHHHC-TTCEEEECCSSHHH
T ss_pred CCEEEEeCCCCCCC----CCcHH---HHHHHHHH----HHHHHHHHHHHHC-CCeEEEEeCCchHH
Confidence 89999999975322 22322 22334444 4444444444322 34788888665433
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.1 Score=46.81 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=40.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG 91 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~ 91 (358)
.+++++|.| +||.|++++..|++.|+..|.++.|+.++++...+.+.
T Consensus 118 ~~~~vlvlG-aGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~ 164 (271)
T 1npy_A 118 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 164 (271)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 467899998 58999999999999997689999999888877776653
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=93.59 E-value=0.094 Score=47.22 Aligned_cols=37 Identities=24% Similarity=0.257 Sum_probs=33.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACR 78 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r 78 (358)
-+++||+++|.|.++-+|+.++..|+..|| +|.++.+
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs 193 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHR 193 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeC
Confidence 468999999999999999999999999997 8888765
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.21 Score=44.01 Aligned_cols=76 Identities=13% Similarity=0.138 Sum_probs=54.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-CCcEEEE-EecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 47 SVIITGASSGLGLATAKALAET-GKWHIIM-ACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-Ga~~Vi~-~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++|.|++|.+|+.+++.+.+. +. .|+. ++++ ..++.... .... +..|++.++...+.+..+.+. ++
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~-elva~~d~~-~dl~~~~~----~~~D---vvIDfT~p~a~~~~~~~a~~~--g~ 70 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDL-TLSAELDAG-DPLSLLTD----GNTE---VVIDFTHPDVVMGNLEFLIDN--GI 70 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTC-EEEEEECTT-CCTHHHHH----TTCC---EEEECSCTTTHHHHHHHHHHT--TC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEccC-CCHHHHhc----cCCc---EEEEccChHHHHHHHHHHHHc--CC
Confidence 5899999999999999999876 74 6654 4443 23333222 1122 558999999988888877765 58
Q ss_pred cEEEEcccc
Q 018331 125 DVLVCNAAV 133 (358)
Q Consensus 125 D~lv~~ag~ 133 (358)
++|+...|.
T Consensus 71 ~~VigTTG~ 79 (245)
T 1p9l_A 71 HAVVGTTGF 79 (245)
T ss_dssp EEEECCCCC
T ss_pred CEEEcCCCC
Confidence 889888874
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.6 Score=42.80 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=67.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC------CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~------~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++.|+|| |.+|..++..|+..|...|++++++++.++.....+... ..++... .| .+
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d---~~----------- 68 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NT---YD----------- 68 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CC---GG-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CC---HH-----------
Confidence 46889998 999999999999999426999999987666444443321 1122211 12 11
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHH--hHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAE--GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~--~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.+...|+||.++|..... ..+.+ .-...+..|..-...+.+.+.++. +++.++++|-..+
T Consensus 69 al~~aD~Vi~a~g~p~k~----g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-----p~a~iiv~tNP~~ 130 (322)
T 1t2d_A 69 DLAGADVVIVTAGFTKAP----GKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-----PNAFIIVVTNPVD 130 (322)
T ss_dssp GGTTCSEEEECCSCSSCT----TCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-----TTSEEEECSSSHH
T ss_pred HhCCCCEEEEeCCCCCCC----CCCcccccHHHHHHHHHHHHHHHHHHHHHHC-----CCeEEEEecCChH
Confidence 123689999999964221 11100 011223344444444444444442 2467777655443
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.28 Score=41.88 Aligned_cols=77 Identities=10% Similarity=0.131 Sum_probs=50.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+..+++.|.| .|.+|.+++..|++.| +.|++++|+++ ......+.++.+- ...+..+++++....+
T Consensus 17 ~~~~~I~iiG-~G~mG~~la~~l~~~g-~~V~~~~~~~~---------~~~~aD~vi~av~---~~~~~~v~~~l~~~~~ 82 (209)
T 2raf_A 17 FQGMEITIFG-KGNMGQAIGHNFEIAG-HEVTYYGSKDQ---------ATTLGEIVIMAVP---YPALAALAKQYATQLK 82 (209)
T ss_dssp ---CEEEEEC-CSHHHHHHHHHHHHTT-CEEEEECTTCC---------CSSCCSEEEECSC---HHHHHHHHHHTHHHHT
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCC-CEEEEEcCCHH---------HhccCCEEEEcCC---cHHHHHHHHHHHHhcC
Confidence 5677899999 7999999999999999 69999999864 1122344444443 5666777776654333
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
=.++|.++...
T Consensus 83 -~~~vi~~~~g~ 93 (209)
T 2raf_A 83 -GKIVVDITNPL 93 (209)
T ss_dssp -TSEEEECCCCB
T ss_pred -CCEEEEECCCC
Confidence 23566665443
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.25 Score=44.42 Aligned_cols=84 Identities=10% Similarity=0.238 Sum_probs=55.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCc---EEEEEecChHHHHHHHHHhcC----------CCCceEEEEecCCCHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKW---HIIMACRDFLKAERAAKSAGM----------AKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~---~Vi~~~r~~~~~~~~~~~~~~----------~~~~i~~~~~Dl~~~~~i~ 111 (358)
.+++.|.|+ |.+|.++++.|++.| + .|++++|+++.++...+.+.- ....+.++.+ .++.+.
T Consensus 3 ~~~I~iIG~-G~mG~aia~~l~~~g-~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav---~p~~~~ 77 (280)
T 3tri_A 3 TSNITFIGG-GNMARNIVVGLIANG-YDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAV---KPHQIK 77 (280)
T ss_dssp CSCEEEESC-SHHHHHHHHHHHHTT-CCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECS---CGGGHH
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHCC-CCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEe---CHHHHH
Confidence 356888877 999999999999999 6 799999998887776654311 1223444444 235566
Q ss_pred HHHHHHHhc-CCCcc-EEEEccccc
Q 018331 112 QFVDTFRRS-GRPLD-VLVCNAAVY 134 (358)
Q Consensus 112 ~~~~~~~~~-~~~iD-~lv~~ag~~ 134 (358)
.+++++... +. -+ +||.+++..
T Consensus 78 ~vl~~l~~~~l~-~~~iiiS~~agi 101 (280)
T 3tri_A 78 MVCEELKDILSE-TKILVISLAVGV 101 (280)
T ss_dssp HHHHHHHHHHHT-TTCEEEECCTTC
T ss_pred HHHHHHHhhccC-CCeEEEEecCCC
Confidence 666666543 32 23 677665543
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.031 Score=53.25 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=37.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEE-EEec----------ChHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHII-MACR----------DFLKAERAAKS 89 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi-~~~r----------~~~~~~~~~~~ 89 (358)
.+++|++++|+| .|.+|..+++.|++.|+ +|+ +.++ +.+.+....++
T Consensus 214 ~~l~gk~vaVqG-~GnVG~~~a~~L~~~Ga-kVVavsD~~G~i~dp~Gld~~~l~~~~~~ 271 (419)
T 3aoe_E 214 LDLRGARVVVQG-LGQVGAAVALHAERLGM-RVVAVATSMGGMYAPEGLDVAEVLSAYEA 271 (419)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEEETTEEEECTTCCCHHHHHHHHHH
T ss_pred CCccCCEEEEEC-cCHHHHHHHHHHHHCCC-EEEEEEcCCCeEECCCCCCHHHHHHHHHh
Confidence 368999999998 89999999999999997 666 7777 55555555544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=93.44 E-value=0.09 Score=47.36 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.+++||+++|.|+++-+|+.++..|+..|| +|.++.|+
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~ 194 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF 194 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC
Confidence 468999999999999999999999999998 88777653
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.17 Score=47.59 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=54.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+||+||-.|+.+|| ++...++.||.+|+++..++ -++.+.+.+..+ ..++.++..|+.+.+
T Consensus 81 ~~~~k~VLDvG~GtGi---Ls~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~----------- 145 (376)
T 4hc4_A 81 ALRGKTVLDVGAGTGI---LSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE----------- 145 (376)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-----------
T ss_pred hcCCCEEEEeCCCccH---HHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-----------
Confidence 4689999999998886 34556778998999999875 344444444333 567999999988752
Q ss_pred cCCCccEEEEcc
Q 018331 120 SGRPLDVLVCNA 131 (358)
Q Consensus 120 ~~~~iD~lv~~a 131 (358)
.-.++|+||...
T Consensus 146 lpe~~DvivsE~ 157 (376)
T 4hc4_A 146 LPEQVDAIVSEW 157 (376)
T ss_dssp CSSCEEEEECCC
T ss_pred CCccccEEEeec
Confidence 124799999754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 358 | ||||
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 8e-32 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 2e-27 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 4e-22 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 6e-22 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 2e-20 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 9e-20 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 2e-19 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 7e-19 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 9e-19 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 1e-18 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 2e-18 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 4e-18 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 4e-18 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 7e-18 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 1e-17 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 1e-17 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 4e-17 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 1e-16 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 1e-16 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 2e-16 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 4e-16 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 1e-15 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 1e-15 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 2e-15 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 2e-15 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-15 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 8e-15 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 1e-14 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 2e-14 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 2e-14 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 3e-14 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 5e-14 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 5e-14 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 8e-14 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 1e-13 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-13 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 3e-13 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 5e-13 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 1e-12 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 2e-12 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 2e-12 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 7e-12 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 7e-12 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 7e-12 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 1e-11 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 2e-11 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-11 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-11 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 4e-11 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 4e-11 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 5e-11 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 6e-11 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 9e-11 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-10 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 3e-10 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 5e-10 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 5e-10 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 6e-10 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 6e-10 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-09 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 2e-08 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 3e-08 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 1e-06 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 2e-06 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 1e-04 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 3e-04 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 3e-04 |
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 118 bits (297), Expect = 8e-32
Identities = 56/272 (20%), Positives = 100/272 (36%), Gaps = 25/272 (9%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG + G+GLA + L +++ RD + + A + + LD+ L
Sbjct: 6 ALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDL 65
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
S+R D R+ LDVLV NA + A T E+++ TN G + LL
Sbjct: 66 QSIRALRDFLRKEYGGLDVLVNNAGIAFKVADP-TPFHIQAEVTMKTNFFGTRDVCTELL 124
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL------NSSSM 221
+K R++ V SI + + + L GL ++
Sbjct: 125 PLIKPQG----RVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKG 180
Query: 222 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE---TGIAFASLYPGCIATTGLFREH-- 276
+ + + AY +K+ + + R+ E+ I + PG + T +
Sbjct: 181 VHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVR-TDMAGPKAT 239
Query: 277 --------IPLFRLLFPPFQKYITKGYVSEDE 300
P++ L PP + +VSE
Sbjct: 240 KSPEEGAETPVYLALLPPDAEGPHGQFVSEKR 271
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 106 bits (265), Expect = 2e-27
Identities = 49/283 (17%), Positives = 91/283 (32%), Gaps = 44/283 (15%)
Query: 45 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
GSV++TGA+ G+GL + L + HII RD E+A + + ++ L
Sbjct: 3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARD---VEKATELKSIKDSRVHVLPLT 59
Query: 104 LASLDSVRQFVDTFRR--SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ S+ FV L +L+ NA V L + N L
Sbjct: 60 VTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVL 119
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSM 221
L++ LL LK + + S +G + +
Sbjct: 120 LTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLG-------------------SITDN 160
Query: 222 IDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281
G AY+ SK + + ++ + + PG + T L ++ L
Sbjct: 161 TSGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQ-TNLGGKNAAL-- 216
Query: 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324
+ +++ L + + +G ++ N
Sbjct: 217 ---------------TVEQSTAELISSFNKLDNSHNGRFFMRN 244
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 91.9 bits (228), Expect = 4e-22
Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 10/172 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
IITG+S+G+G ATA A G + + R + E + +AG++++N + D+
Sbjct: 8 AIITGSSNGIGRATAVLFAREG-AKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADV 66
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTA---EGFELSVGTNHLGHFL 161
+ + + T LD+LV NA +P ++ T TA E ++ ++ N
Sbjct: 67 TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIA 126
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L++ + ++ + SI + + +
Sbjct: 127 LTKKA---VPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNT 175
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.5 bits (227), Expect = 6e-22
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 4/143 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLA 105
++TGAS G+G A A+AL + G ++ R E A A DL+
Sbjct: 13 ALVTGASGGIGAAVARALVQQG-LKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLS 71
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + + R +D+ + NA + P + + G++ N L + +R
Sbjct: 72 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLL-SGSTSGWKDMFNVNVLALSICTRE 130
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
+K+ + +I + S++G
Sbjct: 131 AYQSMKERNVDDGHIININSMSG 153
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.0 bits (215), Expect = 2e-20
Identities = 41/248 (16%), Positives = 76/248 (30%), Gaps = 41/248 (16%)
Query: 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 99
+K++ V+ITGA G+G TA A+ +++ + E A
Sbjct: 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLK-SKLVLWDINKHGLEETAAKCKGLGAKVHT 60
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGH 159
+D ++ + + + + +LV N A + T+ E + N L H
Sbjct: 61 FVVDCSNREDIYSSAKKVKAEIGDVSILV-NNAGVVYTSDLFATQDPQIEKTFEVNVLAH 119
Query: 160 FLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSS 219
F ++ L + +++ ++ V S G L
Sbjct: 120 FWTTKAFLPAMTKNN--HGHIVTVASAAG-----------------HVSVPFLL------ 154
Query: 220 SMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRF--HEETGIAFASLYPGCIATTGLFREHI 277
AY SK + + + TG+ L P + T +
Sbjct: 155 ------------AYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPST 202
Query: 278 PLFRLLFP 285
L L P
Sbjct: 203 SLGPTLEP 210
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 85.4 bits (211), Expect = 9e-20
Identities = 32/172 (18%), Positives = 67/172 (38%), Gaps = 10/172 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
VIITG+S+G+G TA A+ G ++ + R + E + +G++++ + D+
Sbjct: 8 VIITGSSNGIGRTTAILFAQEG-ANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADV 66
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTF---TAEGFELSVGTNHLGHFL 161
+ D Q +++ + +DVLV NA +P A T + + ++ N
Sbjct: 67 TTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIE 126
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
+++ + ++ V SI + L +
Sbjct: 127 MTKKV---KPHLVASKGEIVNVSSIVAGPQAQPDFLYYAIAKAALDQYTRST 175
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 84.7 bits (209), Expect = 2e-19
Identities = 34/163 (20%), Positives = 59/163 (36%), Gaps = 5/163 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG +SG+GL K L G + + + ++ A G E + D++S
Sbjct: 9 ALVTGGASGVGLEVVKLLLGEG-AKVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSE 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ +R L+VLV NA + LP T E F + N F+ + +
Sbjct: 65 ADWTLVMAAVQRRLGTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGI 123
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 210
+K++ + V S + A R A
Sbjct: 124 AAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTRAAA 166
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.7 bits (204), Expect = 7e-19
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 8/141 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG G+G +A +G +++ +D + + D+
Sbjct: 9 VVVTGGGRGIGAGIVRAFVNSG-ARVVICDKDESGGRALEQELP----GAVFILCDVTQE 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D V+ V R LD +V NA + P + +A+GF + N LG + L++L L
Sbjct: 64 DDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLAL 123
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
L++S +I + S+ G
Sbjct: 124 PYLRKS---QGNVINISSLVG 141
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 82.4 bits (203), Expect = 9e-19
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 5/144 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG S G+G + LA G + R+ + DL+S
Sbjct: 11 ALVTGGSRGIGYGIVEELASLG-ASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSR 69
Query: 108 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
++ ++T L++LV NA + + + +T E + L + N + LS L
Sbjct: 70 SERQELMNTVANHFHGKLNILVNNAGIVIYKEAK-DYTVEDYSLIMSINFEAAYHLSVLA 128
Query: 167 LDDLKQSDYPSKRLIIVGSITGNT 190
LK S+ + + + S++G
Sbjct: 129 HPFLKASERGNV--VFISSVSGAL 150
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 81.9 bits (202), Expect = 1e-18
Identities = 28/128 (21%), Positives = 53/128 (41%), Gaps = 4/128 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG ++G+G A A+ A G I +A A A + + D++
Sbjct: 8 AVITGGANGIGRAIAERFAVEG-ADIAIADLV--PAPEAEAAIRNLGRRVLTVKCDVSQP 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V F + D+LV NA +Y + T E ++ + N FL+++ +
Sbjct: 65 GDVEAFGKQVISTFGRCDILVNNAGIYPLIPFD-ELTFEQWKKTFEINVDSGFLMAKAFV 123
Query: 168 DDLKQSDY 175
+K++ +
Sbjct: 124 PGMKRNGW 131
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 81.3 bits (199), Expect = 2e-18
Identities = 53/282 (18%), Positives = 101/282 (35%), Gaps = 47/282 (16%)
Query: 47 SVIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104
S++ITG + GLGL KAL + H+ CR+ +A+ A N I+ +DL
Sbjct: 4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAK-NHSNIHILEIDL 62
Query: 105 ASLDSVRQFVDTFRRSGR--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
+ D+ + V + L+VL NA + +A+ ++ ++ TN + +L
Sbjct: 63 RNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIML 122
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMI 222
++ L LK++ ++ + N + I
Sbjct: 123 AKACLPLLKKAAKANESQPMGVGRAAIINMSSI-----------------------LGSI 159
Query: 223 DGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282
G G AY+ SK + + I SL+PG + T + PL
Sbjct: 160 QGNTDGGMYAYRTSKSA-LNAATKSLSVDLYPQRIMCVSLHPGWVK-TDMGGSSAPLDV- 216
Query: 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324
+ ++ Q +S ++G + +++
Sbjct: 217 ----------------PTSTGQIVQTISKLGEKQNGGFVNYD 242
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.4 bits (198), Expect = 4e-18
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 12/165 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE--NYTIMHLDLA 105
++TGA+ G+G A A+AL G + + + + + E + D+A
Sbjct: 6 ALVTGAAQGIGRAFAEALLLKG-AKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVA 64
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+R LD+LV NA V +E ++ N + + L
Sbjct: 65 DQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN---------WEKTLQINLVSVISGTYL 115
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 210
LD + + + +II S +A A+ + GF
Sbjct: 116 GLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFT 160
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.4 bits (198), Expect = 4e-18
Identities = 29/131 (22%), Positives = 46/131 (35%), Gaps = 3/131 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG + G+G A + A G I R+ + T D +
Sbjct: 11 VLVTGGTKGIGHAIVEEFAGFG-AVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLR 69
Query: 108 DSVRQFVD-TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ + G LD+L+ N +TAE F + TN + LS+L
Sbjct: 70 PEREKLMQTVSSMFGGKLDILINNLGAIRSKPTL-DYTAEDFSFHISTNLESAYHLSQLA 128
Query: 167 LDDLKQSDYPS 177
LK S +
Sbjct: 129 HPLLKASGCGN 139
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 79.9 bits (197), Expect = 7e-18
Identities = 36/166 (21%), Positives = 57/166 (34%), Gaps = 11/166 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG + G+G A A+A A G + + E A G +DL
Sbjct: 8 VLVTGGARGIGRAIAQAFAREG-ALVALCDLRPEGKEVAEAIGG------AFFQVDLEDE 60
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+FV+ + +DVLV NAA+ P + T + + N LS L
Sbjct: 61 RERVRFVEEAAYALGRVDVLVNNAAIAAPGSAL-TVRLPEWRRVLEVNLTAPMHLSALA- 118
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
++ I+ + N A+ G L L
Sbjct: 119 --AREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRSL 162
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 78.9 bits (194), Expect = 1e-17
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 7/114 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
I+T G+ +A L+E G + F + + A T L S
Sbjct: 3 AIVTNVKHFGGMGSALRLSEAG-HTVACHDESFKQKDELEAFAE------TYPQLKPMSE 55
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ ++ + +DVLV N + E + +V + F
Sbjct: 56 QEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 78.9 bits (194), Expect = 1e-17
Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 5/165 (3%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITG + G+GLA A E G +++ R E+AAKS G + D +
Sbjct: 9 AIITGGTLGIGLAIATKFVEEG-AKVMITGRHSDVGEKAAKSVG-TPDQIQFFQHDSSDE 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D + D ++ P+ LV NA + T + + N G F +RL +
Sbjct: 67 DGWTKLFDATEKAFGPVSTLVNNAGIA-VNKSVEETTTAEWRKLLAVNLDGVFFGTRLGI 125
Query: 168 DDLKQSDYPSKRLII--VGSITGNTNTLAGNVPPKANLGDLRGFA 210
+K + + + + G+ + A N A + A
Sbjct: 126 QRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAA 170
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 78.2 bits (192), Expect = 4e-17
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 4/158 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITG + G+G TAK G +++A ++ + G + + + +H D+
Sbjct: 9 AIITGGAGGIGETTAKLFVRYG-AKVVIADIADDHGQKVCNNIG-SPDVISFVHCDVTKD 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEP-TFTAEGFELSVGTNHLGHFLLSRLL 166
+ VR VDT LD++ N V T E F+ + N G FL+++
Sbjct: 67 EDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHA 126
Query: 167 LDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANL 203
+ + S + S T K +
Sbjct: 127 ARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHAV 164
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 76.6 bits (188), Expect = 1e-16
Identities = 35/223 (15%), Positives = 63/223 (28%), Gaps = 45/223 (20%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA-S 106
VI A G+GL T++ L + + ++ R A A K N T D+
Sbjct: 8 VIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVP 67
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ ++ + + +D+L+ A + E ++ N G + +
Sbjct: 68 VAESKKLLKKIFDQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAI 118
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 226
LD + +I N S+
Sbjct: 119 LDFWDKRKGGPGGIIA----------------------------------NICSVTGFNA 144
Query: 227 FDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIAT 269
Y SK + + TG+ S+ PG T
Sbjct: 145 IHQVPVYSASKAAVVSFTNSL-AKLAPITGVTAYSINPGITRT 186
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 76.6 bits (188), Expect = 1e-16
Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 5/119 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK---SAGMAKENYTIMHLDL 104
VIITG+S+G+G + A A+ G + + R+ + E + AG+ E + D+
Sbjct: 7 VIITGSSNGIGRSAAVIFAKEG-AQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADV 65
Query: 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPT-FTAEGFELSVGTNHLGHFLL 162
++T +D+LV NA L T E ++ + N +
Sbjct: 66 TEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEM 124
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 75.8 bits (186), Expect = 2e-16
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 8/167 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITG +SGLG A G + + + AER A+ +N + D+ SL
Sbjct: 8 VLITGGASGLGRALVDRFVAEG-AKVAVLDKS---AERLAELETDHGDNVLGIVGDVRSL 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLS 163
+ +Q +D L+ NA ++ + F+ N G+
Sbjct: 64 EDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAV 123
Query: 164 RLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 210
+ L L S I N A +G +R A
Sbjct: 124 KACLPALVASRGNVIFTISNAGFYPNGGGPLYTAAKHAIVGLVRELA 170
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.7 bits (183), Expect = 4e-16
Identities = 35/166 (21%), Positives = 63/166 (37%), Gaps = 12/166 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TGA G+G T +AL TG ++ R + + + +DL
Sbjct: 10 VLVTGAGKGIGRGTVQALHATG-ARVVAVSRTQADLDSLVRECP----GIEPVCVDLGDW 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
++ + + + P+D+LV NAAV L T E F+ S N +S+++
Sbjct: 65 EATERALGSV----GPVDLLVNNAAVALLQPFL-EVTKEAFDRSFEVNLRAVIQVSQIVA 119
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L P I+ S + + + + G L +
Sbjct: 120 RGLIARGVPGA--IVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM 163
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 73.5 bits (180), Expect = 1e-15
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 12/166 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA G+G T KAL +G ++ R AK + +DL
Sbjct: 8 ALVTGAGKGIGRDTVKALHASG-AKVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDW 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
D+ + + +D+LV NAA+ + T E F+ S N F +S+++
Sbjct: 63 DATEKALGGIGP----VDLLVNNAALVIMQPFL-EVTKEAFDRSFSVNLRSVFQVSQMVA 117
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
D+ P I+ S T + + G + +
Sbjct: 118 RDMINRGVPGS--IVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAM 161
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 73.5 bits (180), Expect = 1e-15
Identities = 33/141 (23%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
VIITG + GLG A+ G +++A + A+ G + HLD+
Sbjct: 8 VIITGGARGLGAEAARQAVAAG-ARVVLADVLDEEGAATARELG---DAARYQHLDVTIE 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ ++ V R +D LV NA + E E F V N G F+ + ++
Sbjct: 64 EDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETES-VERFRKVVEINLTGVFIGMKTVI 122
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+K + ++ + S G
Sbjct: 123 PAMKDAGGG--SIVNISSAAG 141
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 73.5 bits (180), Expect = 2e-15
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 10/147 (6%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLK------AERAAKSAGMAKENYTIMH 101
V++TGA GLG A A A AE G +++ + A K +
Sbjct: 10 VLVTGAGGGLGRAYALAFAERG-ALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV 68
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ S+++ + V T + +DV+V NA + + + E +++ + G F
Sbjct: 69 ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRI-SDEDWDIIQRVHLRGSFQ 127
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITG 188
++R D +K+ +Y R+I+ S +G
Sbjct: 128 VTRAAWDHMKKQNYG--RIIMTASASG 152
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 72.4 bits (177), Expect = 2e-15
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 5/117 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++G + G+G + +A+ G ++ E A + +HLD+
Sbjct: 9 ALVSGGARGMGASHVRAMVAEG-AKVVFGDIL---DEEGKAMAAELADAARYVHLDVTQP 64
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+ VDT + L VLV NA + E + ++ + N G FL R
Sbjct: 65 AQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIE-DYALTEWQRILDVNLTGVFLGIR 120
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 72.0 bits (176), Expect = 4e-15
Identities = 33/170 (19%), Positives = 57/170 (33%), Gaps = 5/170 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLAS 106
+I+TG + G+GLA +A+A G ++ + R A + G D+++
Sbjct: 12 IIVTGGNRGIGLAFTRAVAAAG-ANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN 70
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
D V + + P+ L+ NA V + T E F N G F R +
Sbjct: 71 TDIVTKTIQQIDADLGPISGLIANAGVSVVKPAT-ELTHEDFAFVYDVNVFGVFNTCRAV 129
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGL 216
K I+V S + ++ + L
Sbjct: 130 AK--LWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVFYNSSKAACSNL 177
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 71.3 bits (174), Expect = 8e-15
Identities = 26/114 (22%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG S G+G A + LA G + R+ + + + N DL S
Sbjct: 9 ALVTGGSKGIGYAIVEELAGLG-ARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSR 67
Query: 108 DSVRQFVDTF-RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
+ + T L++LV NA V + + FT + + + +GTN +
Sbjct: 68 TERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAK-DFTEKDYNIIMGTNFEAAY 120
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 70.9 bits (173), Expect = 1e-14
Identities = 42/166 (25%), Positives = 60/166 (36%), Gaps = 4/166 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR--DFLKAERAAKSAGMAKENYTIMHLDLA 105
V+ITG SGLG ATA LA G + + + L+A +AA D++
Sbjct: 7 VLITGGGSGLGRATAVRLAAEG-AKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVS 65
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
V +V +D NA + +FTA F+ V N G FL
Sbjct: 66 DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEK 125
Query: 166 LLDDLKQSDYPSKRLII-VGSITGNTNTLAGNVPPKANLGDLRGFA 210
+L +++ VG I G N +G R A
Sbjct: 126 VLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLTRNSA 171
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 70.2 bits (171), Expect = 2e-14
Identities = 32/163 (19%), Positives = 52/163 (31%), Gaps = 1/163 (0%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ TGA G+G A L G ++ AE + D++
Sbjct: 9 ALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKP 68
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
V D LD ++ N+ + + + T E F+ N G F +++ L
Sbjct: 69 SEVVALFDKAVSHFGGLDFVMSNSGMEVWCDEL-EVTQELFDKVFNLNTRGQFFVAQQGL 127
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 210
++ I +TG N A G R FA
Sbjct: 128 KHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAVEGFCRAFA 170
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 69.8 bits (170), Expect = 2e-14
Identities = 35/172 (20%), Positives = 63/172 (36%), Gaps = 10/172 (5%)
Query: 48 VIITGASSGLGLATAKALAETGKWH------IIMACRDFLKAERAAKSAGMAKENYTIMH 101
++ITGA G+G A A A + H ++++ R E+ + +
Sbjct: 4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTIT 63
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
D++ + VR+ +D LV NA V A T E F+ ++ TN G F
Sbjct: 64 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSD-LTEEDFDYTMNTNLKGTFF 122
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L++ L +++ I + T + + RG +
Sbjct: 123 LTQALFALMERQHSGHIFFI---TSVAATKAFRHSSIYCMSKFGQRGLVETM 171
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 69.7 bits (170), Expect = 3e-14
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
++TG S GLG A+ LAE G +++A R+ +A AA+ D+++
Sbjct: 8 ALVTGGSRGLGFGIAQGLAEAG-CSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN 66
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAV 133
+ V++ ++ + LD +V A +
Sbjct: 67 YEEVKKLLEAVKEKFGKLDTVVNAAGI 93
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 68.9 bits (168), Expect = 5e-14
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
IITGA +G+G A A G ++++ + A D+ S
Sbjct: 14 AIITGAGAGIGKEIAITFATAG-ASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSE 72
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 140
+ D +D+LV NA P +
Sbjct: 73 QELSALADFAISKLGKVDILVNNAGGGGPKPFD 105
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.3 bits (169), Expect = 5e-14
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 7/149 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-----AGMAKENYTIMHL 102
I+TG ++G+G A K L E G ++++A R + + AA + +
Sbjct: 15 AIVTGGATGIGKAIVKELLELG-SNVVIASRKLERLKSAADELQANLPPTKQARVIPIQC 73
Query: 103 DLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLL 162
++ + + V V + + ++ LV N + E +++G+ + TN G F +
Sbjct: 74 NIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHI-SSKGWHAVLETNLTGTFYM 132
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTN 191
+ + + S IIV + G
Sbjct: 133 CKAVYSSWMKEHGGSIVNIIVPTKAGFPL 161
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 68.3 bits (166), Expect = 8e-14
Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTI 99
KK ++TGA G+G A A L + G + + +A + A+ A A +
Sbjct: 1 KKV-----ALVTGAGQGIGKAIALRLVKDG-FAVAIADYNDATAKAVASEINQAGGHAVA 54
Query: 100 MHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKE 140
+ +D++ D V V+ R++ DV+V NA V T E
Sbjct: 55 VKVDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIE 95
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 67.4 bits (164), Expect = 1e-13
Identities = 42/223 (18%), Positives = 75/223 (33%), Gaps = 27/223 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMAC-RDFLKAERAAKSAGMAKENYTIMHLDLAS 106
V++TGAS G+G A A +L + G +++ R AE +K D++
Sbjct: 4 VVVTGASRGIGKAIALSLGKAG-CKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK 62
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
V + T + +DV+V NA + T ++ + N G FL ++
Sbjct: 63 EADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKK-SQWDEVIDLNLTGVFLCTQAA 121
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 226
+ + R+I + S+ G L G G N + + + G
Sbjct: 122 TKIMMKKRKG--RIINIASVVG-----------------LIGNIGQANYAAAKAGVIGFS 162
Query: 227 FDGAKAYKDSK-----VCNMLTMQEFHRRFHEETGIAFASLYP 264
A+ VC + + E+ P
Sbjct: 163 KTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP 205
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 67.0 bits (163), Expect = 2e-13
Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 7/163 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V+ITGA+ G+G AT + A+ G ++ + AA++ G + +D+A
Sbjct: 8 VLITGAAHGIGRATLELFAKEG-ARLVACDIEEGPLREAAEAVG-----AHPVVMDVADP 61
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
SV + LD +V A E +EL + N G FL+++
Sbjct: 62 ASVERGFAEALAHLGRLDGVVHYAG-ITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAAS 120
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFA 210
+ +++ + S L GN +G R A
Sbjct: 121 EAMREKNPGSIVLTASRVYLGNLGQANYAASMAGVVGLTRTLA 163
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 66.7 bits (162), Expect = 3e-13
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA+SG+GL A+ L + G + + R K A D+ S+
Sbjct: 5 ALVTGATSGIGLEIARRLGKEG-LRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSV 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTA 138
+ V P+DVLV NA A
Sbjct: 64 PEIEALVAAVVERYGPVDVLVNNAGRPGGGA 94
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 66.1 bits (160), Expect = 5e-13
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRD------FLKAERAAKSAGMAKENYTIMH 101
+ITG + +G + A L + G + +++ R L AE A AG A +
Sbjct: 4 AVITGGARRIGHSIAVRLHQQG-FRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62
Query: 102 LDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPT 137
L + LD +D R+ DVLV NA+ Y PT
Sbjct: 63 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPT 98
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 64.5 bits (156), Expect = 1e-12
Identities = 18/151 (11%), Positives = 40/151 (26%), Gaps = 19/151 (12%)
Query: 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENY 97
+ ++ V++ G LG +A W + + A
Sbjct: 1 EARR------VLVYGGRGALGSRCVQAFRARN-WWVAS-------IDVVENEEASASVIV 46
Query: 98 TIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL 157
+ D V V + +D ++C A + + + +L +
Sbjct: 47 KMTDSFTEQADQVTAEVGKLLGDQK-VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIW 105
Query: 158 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
+ S L + L + G+
Sbjct: 106 TSTISSHL----ATKHLKEGGLLTLAGAKAA 132
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 64.4 bits (156), Expect = 2e-12
Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+ITG++ G+G A A+A G + +A + A A G + LD+
Sbjct: 8 ALITGSARGIGRAFAEAYVREG-ARVAIADINLEAARATAAEIG---PAACAIALDVTDQ 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
S+ + V +D+LV NAA++ A T E ++ N G
Sbjct: 64 ASIDRCVAELLDRWGSIDILVNNAALF-DLAPIVEITRESYDRLFAINVSGTLF 116
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.0 bits (155), Expect = 2e-12
Identities = 32/176 (18%), Positives = 55/176 (31%), Gaps = 11/176 (6%)
Query: 48 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAK--SAGMAKENYTIMHLD 103
++TGAS G G A A LA ++++ R + + A + D
Sbjct: 9 CVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAAD 68
Query: 104 LASLDSVRQFV----DTFRRSGRPLDVLVCNAAVYLPTAKEP--TFTAEGFELSVGTNHL 157
L + V++ + + R G +L+ NAA +K N
Sbjct: 69 LGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLT 128
Query: 158 GHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L+ L+ + S SK ++ + S G A L
Sbjct: 129 SMLCLTSGTLNAFQDSPGLSKTVVNI-SSLCALQPYKGWGLYCAGKAARDMLYQVL 183
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 62.4 bits (151), Expect = 7e-12
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+++TGA+SG+G A A G ++ R+ A++ + + D++
Sbjct: 8 ILVTGAASGIGRAALDLFAREG-ASLVAVDRE---ERLLAEAVAALEAEAIAVVADVSDP 63
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
+V L + A V
Sbjct: 64 KAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEA 102
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 62.6 bits (151), Expect = 7e-12
Identities = 37/206 (17%), Positives = 66/206 (32%), Gaps = 36/206 (17%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++I+G ++G+G AT K L G I+ AE A DL++
Sbjct: 4 IVISGCATGIGAATRKVLEAAG-HQIVGIDIR--DAEVIA---------------DLSTA 45
Query: 108 DSVRQ-FVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ +Q D + + +D LV A + + V N+ G L
Sbjct: 46 EGRKQAIADVLAKCSKGMDGLVLCAGL--------GPQTKVLGNVVSVNYFGATELMDAF 97
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGD 226
L LK+ P+ +I + G + + G+
Sbjct: 98 LPALKKGHQPAAVVISSVAS---------AHLAFDKNPLALALEAGEEAKARAIVEHAGE 148
Query: 227 FDGAKAYKDSKVCNMLTMQEFHRRFH 252
G AY SK + +++ +
Sbjct: 149 QGGNLAYAGSKNALTVAVRKRAAAWG 174
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 62.5 bits (151), Expect = 7e-12
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 1/113 (0%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA +GLATA LAE G I + + E+A S D+ S
Sbjct: 8 CLVTGAGGNIGLATALRLAEEG-TAIALLDMNREALEKAEASVREKGVEARSYVCDVTSE 66
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHF 160
++V VD+ R +D L NA A + ++ F + N G F
Sbjct: 67 EAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAF 119
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 61.7 bits (149), Expect = 1e-11
Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 106
V+ITG+S+GLG + A A +++ R +A + + D+
Sbjct: 10 VVITGSSTGLGKSMAIRFATEK-AKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV 68
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
V V + + LDV++ NA + P + ++
Sbjct: 69 ESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSD 108
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.8 bits (149), Expect = 2e-11
Identities = 34/168 (20%), Positives = 57/168 (33%), Gaps = 5/168 (2%)
Query: 48 VIITGASSGLGLATAKALAETGK--WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
V+ITG SSG+GL A LA + + RD R ++A +
Sbjct: 5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQL 64
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ + R ++ A + + N +G + +
Sbjct: 65 DVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQA 124
Query: 166 LLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
L D+K+ S R+++ GS+ G L N A+ L G L
Sbjct: 125 FLPDMKRRG--SGRVLVTGSVGGLMG-LPFNDVYCASKFALEGLCESL 169
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 61.3 bits (148), Expect = 2e-11
Identities = 22/118 (18%), Positives = 46/118 (38%), Gaps = 3/118 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLAS 106
++TGA G+G A L G +I+ + AE + + + ++
Sbjct: 21 ALVTGAGRGIGREMAMELGRRG-CKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV 79
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
++ + + + + LD++ N+ V + T E F+ N G F ++R
Sbjct: 80 VEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVK-DVTPEEFDRVFTINTRGQFFVAR 136
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 60.7 bits (146), Expect = 3e-11
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 13/143 (9%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
G VI+ G LG A + + G + ++ A A S + N
Sbjct: 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLS---ANDQADSNILVDGNKN----WTE 54
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
S+ + + + + +D + C A + + + +L + + + ++
Sbjct: 55 QEQSILEQTASSLQGSQ-VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAK- 112
Query: 166 LLDDLKQSDYPSKRLIIVGSITG 188
P L + G+
Sbjct: 113 ---LATTHLKPGGLLQLTGAAAA 132
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.5 bits (146), Expect = 4e-11
Identities = 31/148 (20%), Positives = 54/148 (36%), Gaps = 3/148 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLAS 106
VI+TGAS G+G A LA+ G H+++ R ++ + + +
Sbjct: 17 VIVTGASKGIGREMAYHLAKMG-AHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED 75
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166
+ QFV + LD+L+ N + S+ N L + +L+
Sbjct: 76 MTFAEQFVAQAGKLMGGLDMLILNHITN-TSLNLFHDDIHHVRKSMEVNFLSYVVLTVAA 134
Query: 167 LDDLKQSDYPSKRLIIVGSITGNTNTLA 194
L LKQS+ + + A
Sbjct: 135 LPMLKQSNGSIVVVSSLAGKVAYPMVAA 162
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 60.5 bits (146), Expect = 4e-11
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
ITG +GLG L+ G ++A R + A+ + + D+
Sbjct: 28 AFITGGGTGLGKGMTTLLSSLG-AQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD 86
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNA 131
D V+ V + ++++ NA
Sbjct: 87 PDMVQNTVSELIKVAGHPNIVINNA 111
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 60.0 bits (145), Expect = 5e-11
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 4/141 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGA G+G AK LA++ H+I R + + D++
Sbjct: 13 ALVTGAGRGIGREIAKMLAKSV-SHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKK 71
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ + + ++ + +D+LV NA + + +E + TN F +++ +
Sbjct: 72 EEISEVINKILTEHKNVDILVNNAGIT-RDNLFLRMKNDEWEDVLRTNLNSLFYITQPIS 130
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+ + Y R+I + SI G
Sbjct: 131 KRMINNRYG--RIINISSIVG 149
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 59.7 bits (144), Expect = 6e-11
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++TG + G+GLA A+ LA G + + R + + +D+
Sbjct: 10 VLVTGGNRGIGLAIAQRLAADG-HKVAVTHRGSGAPKGLFG-----------VEVDVTDS 57
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNA 131
D+V + P++VLV NA
Sbjct: 58 DAVDRAFTAVEEHQGPVEVLVSNA 81
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 59.4 bits (143), Expect = 9e-11
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 7/141 (4%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TGAS G+G A A+ LA G +I A+ + G N + L++
Sbjct: 7 ALVTGASRGIGRAIAETLAARG-AKVIGTATSENGAQAISDYLG---ANGKGLMLNVTDP 62
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
S+ ++ R +D+LV NA + E + + TN F LS+ ++
Sbjct: 63 ASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWND-IIETNLSSVFRLSKAVM 121
Query: 168 DDLKQSDYPSKRLIIVGSITG 188
+ + + R+I +GS+ G
Sbjct: 122 RAMMKKRHG--RIITIGSVVG 140
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 57.8 bits (139), Expect = 2e-10
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
V++ AS G+G A A L++ G + + R+ E K +G + + D
Sbjct: 7 VLVLAASRGIGRAVADVLSQEG-AEVTICARN----EELLKRSG-----HRYVVCD---- 52
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSR 164
+R+ +D + +D+LV NA + E F+ ++ + L + R
Sbjct: 53 --LRKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTN-EDFKEAIDSLFLNMIKIVR 106
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 57.9 bits (139), Expect = 3e-10
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS-AGMAKENYTIMHLDLAS 106
++TG++SG+GL A ALA G ++ D + E+ A DL+
Sbjct: 7 AVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK 66
Query: 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
++VR VD R +D+LV NA + E T +
Sbjct: 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEK 106
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.0 bits (137), Expect = 5e-10
Identities = 28/166 (16%), Positives = 56/166 (33%), Gaps = 13/166 (7%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
+I+T A+ G+G A A A A G +I + K + K G+
Sbjct: 9 IILTAAAQGIGQAAALAFAREG-AKVIATDINESKLQELEKYPGIQTRVLD--------- 58
Query: 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLL 167
+ ++ +D F LDVL A + ++ S+ N +L+ + L
Sbjct: 59 VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDC-EEKDWDFSMNLNVRSMYLMIKAFL 117
Query: 168 DDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
+ + +I + S+ + + + G +
Sbjct: 118 PKMLAQKSGN--IINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSV 161
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 56.9 bits (136), Expect = 5e-10
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMH 101
G+V++TG + G+G A+ LA G H+++ R A+ A + +
Sbjct: 10 GTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTT 65
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.8 bits (136), Expect = 6e-10
Identities = 38/175 (21%), Positives = 60/175 (34%), Gaps = 7/175 (4%)
Query: 45 KGSV-IITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLD 103
KG V +ITG +SGLGLATA+ L G ++ E AK G
Sbjct: 4 KGLVAVITGGASGLGLATAERLVGQG-ASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS 62
Query: 104 LASLDSVRQFVDTFRRSGRPLDVLVC--NAAVYLPTAKEPTFTAEGFELSVGTNHLGHFL 161
+ + A+ K T T E F+ + N +G F
Sbjct: 63 EKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFN 122
Query: 162 LSRLLLDDLKQSDYPSKR---LIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
+ RL+ ++ Q++ +II + G A+ G + G +
Sbjct: 123 VIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPI 177
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 56.8 bits (136), Expect = 6e-10
Identities = 23/171 (13%), Positives = 49/171 (28%), Gaps = 12/171 (7%)
Query: 48 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
++ G ++ LG A A L E G + ++ + A K A
Sbjct: 11 ALVMGVTNQRSLGFAIAAKLKEAG-AEVALSYQAERLRPEAEKLAEALGGALLFRADV-T 68
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFT---AEGFELSVGTNHLGHFLL 162
+ + + + LD LV A A E + + + L++ + +
Sbjct: 69 QDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAV 128
Query: 163 SRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
+R L++ ++ + + L L
Sbjct: 129 ARRAEPLLREGGG----IVTLTYYASEK-VVPKYNVMAIAKAALEASVRYL 174
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 55.1 bits (131), Expect = 3e-09
Identities = 26/138 (18%), Positives = 43/138 (31%), Gaps = 21/138 (15%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACR------DFLKAERAAKSAGMA-------- 93
++TGA+ LG + A+ L G + + + + L A A+ A
Sbjct: 5 ALVTGAAKRLGRSIAEGLHAEG-YAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 63
Query: 94 -----KENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGF 148
+ + + V DVLV NA+ + PT +G
Sbjct: 64 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLL-RNDEDGH 122
Query: 149 ELSVGTNHLGHFLLSRLL 166
E VG + L
Sbjct: 123 EPCVGDREAMETATADLF 140
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 52.2 bits (124), Expect = 2e-08
Identities = 22/172 (12%), Positives = 50/172 (29%), Gaps = 13/172 (7%)
Query: 48 VIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLA 105
+++TG +S + A+A+ G + ++ R + A + + D+A
Sbjct: 8 ILVTGVASKLSIAYGIAQAMHREG-AELAFTYQNDKLKGRVEEFAAQLGSDIVLQC-DVA 65
Query: 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY----LPTAKEPTFTAEGFELSVGTNHLGHFL 161
S+ + D V + L T EGF+++ +
Sbjct: 66 EDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVA 125
Query: 162 LSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGL 213
+++ L ++ S G + L +
Sbjct: 126 MAKACRSMLNPGSA-----LLTLSYLGAERAIPNYNVMGLAKASLEANVRYM 172
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 51.7 bits (123), Expect = 3e-08
Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 19/147 (12%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASL 107
++TG +SGLG A A AL G + +++ E+ + D+
Sbjct: 4 ALVTGGASGLGRAAALALKARG-YRVVVLDLR------------REGEDLIYVEGDVTRE 50
Query: 108 DSVRQFVDTFRRSGRPLDVLVCN--AAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRL 165
+ VR+ V + V+ KE E F + N LG F + RL
Sbjct: 51 EDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRL 110
Query: 166 LLDDLKQSDYPSK----RLIIVGSITG 188
++++ ++ ++ S+
Sbjct: 111 AAWAMRENPPDAEGQRGVIVNTASVAA 137
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 47.0 bits (110), Expect = 1e-06
Identities = 14/101 (13%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 38 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 95
+GKK +I G ++ + A++ G + + E+ +
Sbjct: 4 KGKK------GLIVGVANNKSIAYGIAQSCFNQG-ATLAFTYLN-ESLEKRVRPIAQELN 55
Query: 96 NYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP 136
+ + LD++ + + ++ ++ LD +V + A
Sbjct: 56 SPYVYELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPK 96
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 46.7 bits (109), Expect = 2e-06
Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 38 QGKKTLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLK-AERAAKSAGMAK 94
GK+ ++++G S + A+ E G +++ D L+ +R
Sbjct: 5 DGKR------ILVSGIITDSSIAFHIARVAQEQG-AQLVLTGFDRLRLIQRITDRLPAKA 57
Query: 95 ENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVY 134
+ + L S+ V +G LD +V +
Sbjct: 58 PLLELDVQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFM 97
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88
V + G + LG A LA G I++ R KAE A
Sbjct: 3 VALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAA 42
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 16/162 (9%), Positives = 42/162 (25%), Gaps = 15/162 (9%)
Query: 27 TASPAVDVSSPQGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERA 86
TA+ V + +++ ++ + +G+ +A LA G ++ + A
Sbjct: 5 TAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAA 64
Query: 87 AKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAE 146
+ + + A S + V + A+ L
Sbjct: 65 DS--VNKRFKVNVTAAETADDASRAEAVK-------GAHFVFTAGAIGL-----ELLPQA 110
Query: 147 GFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188
++ + + L + + G
Sbjct: 111 AWQNESSIEIVADYNAQPPLGIGGIDA-TDKGKEYGGKRAFG 151
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 39.7 bits (91), Expect = 3e-04
Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 38 QGKKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE 95
+GK+ I G + G G A AK+LA G ++ L + G +
Sbjct: 7 RGKR------AFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQ 60
Query: 96 NYTIMHLDLASLDSVRQFVDTF 117
+ + L + V F
Sbjct: 61 SRVLPDGSLMEIKKVYPLDAVF 82
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 358 | |||
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.97 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.96 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.83 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.73 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.73 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.72 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.72 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.71 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.71 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.71 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.7 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.7 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.69 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.66 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.66 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.63 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.63 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.63 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.63 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.63 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.63 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.62 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.62 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.58 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.57 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.57 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.38 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.35 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.3 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.21 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.19 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.1 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.03 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.56 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.02 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.88 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.72 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.71 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.71 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.64 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 97.57 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.52 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.46 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.44 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.42 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.4 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.35 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.35 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.29 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.27 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.27 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.23 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.21 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.18 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.15 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.12 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.01 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.96 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.94 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.94 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 96.93 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.93 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.89 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.85 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.84 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 96.81 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.8 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.79 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.77 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.7 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 96.64 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.61 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.59 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 96.54 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.52 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.49 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.47 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.46 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.46 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.4 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.4 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.29 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.29 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.25 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.2 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.18 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.16 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.15 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.09 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.09 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 95.88 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 95.84 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.81 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 95.81 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.77 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 95.59 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.46 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.33 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.26 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.07 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.07 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 94.98 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.96 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 94.86 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 94.85 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.67 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.58 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.35 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 94.18 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 94.15 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.06 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 93.8 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 93.76 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 93.74 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 93.73 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 93.71 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.68 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 93.63 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 93.33 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 93.1 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.74 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 92.64 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.56 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.32 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.14 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 91.4 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 91.22 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 91.09 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 91.04 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 91.0 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.41 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 89.99 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 89.87 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 89.85 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 89.63 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 89.38 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 89.37 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 88.98 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 88.7 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 88.62 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 88.58 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 88.08 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 87.96 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 87.95 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 87.86 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 87.23 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 86.9 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 86.66 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 86.58 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 86.58 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 86.46 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 86.33 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.05 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 85.58 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 85.56 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 85.55 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 85.4 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 85.38 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.25 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 85.13 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 84.9 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 84.68 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 84.6 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 84.26 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 83.81 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.66 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 83.19 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 83.14 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 83.12 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 82.98 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 82.82 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 82.73 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 82.6 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 82.55 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 82.24 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 82.22 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 81.7 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 81.59 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 81.52 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 81.51 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 81.36 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 81.26 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 81.25 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 80.83 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 80.62 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 80.54 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 80.02 |
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=4.9e-47 Score=344.34 Aligned_cols=249 Identities=18% Similarity=0.190 Sum_probs=220.4
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
++++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.++.++++|+++.++++++++++.
T Consensus 2 g~f~L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (259)
T d2ae2a_ 2 GRWNLEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVA 80 (259)
T ss_dssp CTTCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHH
Confidence 46799999999999999999999999999996 99999999999999999998888899999999999999999999999
Q ss_pred hcCC-CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGR-PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~-~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
++++ ++|+||||||.... .++.+.+.++|++++++|+.+++.++++++|+|+++. .|+||++||..+..
T Consensus 81 ~~~~~~idilvnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~------- 150 (259)
T d2ae2a_ 81 NHFHGKLNILVNNAGIVIY-KEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASE--RGNVVFISSVSGAL------- 150 (259)
T ss_dssp HHTTTCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTS--SEEEEEECCGGGTS-------
T ss_pred HHhCCCceEEEECCceecc-CccccCCHHHHHHHHhcccceeEEEEeeccchhhhhc--cccccccccccccc-------
Confidence 8876 89999999998754 4677899999999999999999999999999999876 48999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|+.+|+|++|+|+ ++.||+||+|+||+|+|++......
T Consensus 151 ----------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~ 201 (259)
T d2ae2a_ 151 ----------------------------AVPYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQ 201 (259)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTT
T ss_pred ----------------------------ccccccchHHHHHHHHHHHHHHHHHh-CcCceEEEEeeeCcccCHHHHhhhh
Confidence 55788899999999999999999999 8889999999999999986533221
Q ss_pred -h-hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 -P-LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 -~-~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+ ............|.+++.+|+|+|+.++||+++.+.++||+.+.+||+-
T Consensus 202 ~~~~~~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 253 (259)
T d2ae2a_ 202 DPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGL 253 (259)
T ss_dssp SHHHHHHHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred chhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCe
Confidence 1 1122233445667788999999999999999999989999999999974
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=5.6e-47 Score=342.43 Aligned_cols=244 Identities=17% Similarity=0.171 Sum_probs=215.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..|++|++|||||++|||+++|+.|+++|+ +|++++|+++.++.+.++++..+.++..+++|+++.++++++++++.++
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 84 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE 84 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence 478999999999999999999999999996 9999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||.... ..+.+.+.++|++++++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 85 ~g~iDilvnnag~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~---------- 151 (251)
T d2c07a1 85 HKNVDILVNNAGITRD-NLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR--YGRIINISSIVGLT---------- 151 (251)
T ss_dssp CSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH----------
T ss_pred cCCceeeeeccccccc-cccccccHHHHhhhheeeehhhhhhhhhcCcccccCC--CeEEEEECCHHhcC----------
Confidence 9999999999998755 4677889999999999999999999999999999876 49999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|++||+|+.+|+|+||+|+ ++.||+||+|+||+|+|++.......
T Consensus 152 -------------------------~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~V~PG~v~T~~~~~~~~~-- 203 (251)
T d2c07a1 152 -------------------------GNVGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQ-- 203 (251)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----CCHH--
T ss_pred -------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCEecccccccCHH--
Confidence 55778899999999999999999999 88899999999999999976443211
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 204 -~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 249 (251)
T d2c07a1 204 -IKKNIISNIPAGRMGTPEEVANLACFLSSDKSGYINGRVFVIDGGL 249 (251)
T ss_dssp -HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECCCc
Confidence 1223334567788999999999999999999999999999999974
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=6.7e-47 Score=341.80 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=215.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+|+||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++.+ .+.++.++++|+++.++++++++++.+
T Consensus 1 f~l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 79 (251)
T d1vl8a_ 1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE 79 (251)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 379999999999999999999999999996 999999999888887776643 467899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||+++|..+..
T Consensus 80 ~~g~iDiLVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~i~S~~~~~--------- 147 (251)
T d1vl8a_ 80 KFGKLDTVVNAAGINRR-HPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD--NPSIINIGSLTVEE--------- 147 (251)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS--SCEEEEECCGGGTC---------
T ss_pred HcCCCCEEEECCCCCCC-CChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc--cccccccccchhcc---------
Confidence 99999999999998644 5788899999999999999999999999999999876 48999999976542
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
.+.++...|+.||+|+.+|+++|+.|+ ++.||+||+|+||+++|++..... ..
T Consensus 148 -------------------------~~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i~T~~~~~~~-~~ 200 (251)
T d1vl8a_ 148 -------------------------VTMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVF-SD 200 (251)
T ss_dssp -------------------------CCSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHH-TC
T ss_pred -------------------------ccCccccchHHHHHhHHHHHHHHHHHh-cccCeEEEEEeeCcccCHHHHhcc-CC
Confidence 245678899999999999999999999 888999999999999998654322 11
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 201 ~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~a~~itG~~i~vDGG~ 248 (251)
T d1vl8a_ 201 PEKLDYMLKRIPLGRTGVPEDLKGVAVFLASEEAKYVTGQIIFVDGGW 248 (251)
T ss_dssp HHHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhCCCcCcEEEeCcCe
Confidence 122233445667788999999999999999999989999999999974
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.5e-47 Score=343.74 Aligned_cols=244 Identities=18% Similarity=0.178 Sum_probs=218.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|++|+++|+ +|++++|+.++++++.++++..+.++.++++|++++++++++++++.++
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 85 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK 85 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||+.... .+ +.+.++|++++++|+.+++.++++++|+|++++ +++||++||..+..
T Consensus 86 ~g~iDilvnnAG~~~~~-~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Ii~isS~~~~~---------- 151 (255)
T d1fmca_ 86 LGKVDILVNNAGGGGPK-PF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG--GGVILTITSMAAEN---------- 151 (255)
T ss_dssp HSSCCEEEECCCCCCCC-CT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTC----------
T ss_pred cCCCCEeeeCCcCCCCC-cc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc--ccccccccccchhc----------
Confidence 99999999999987543 44 789999999999999999999999999999876 48999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|+|++|+|+ ++.||+||+|+||+|+|+++.....+.
T Consensus 152 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~e- 204 (255)
T d1fmca_ 152 -------------------------KNINMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPE- 204 (255)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHH-
T ss_pred -------------------------cccccccchhHHHHHHHHHHHHHHHh-CccCeEEEEeeeCcCcChHhhccCCHH-
Confidence 56788899999999999999999999 888999999999999998765433321
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 205 -~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 250 (255)
T d1fmca_ 205 -IEQKMLQHTPIRRLGQPQDIANAALFLCSPAASWVSGQILTVSGGG 250 (255)
T ss_dssp -HHHHHHHTCSSCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred -HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEECcCc
Confidence 2223345567788899999999999999999989999999999985
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=7.1e-47 Score=343.46 Aligned_cols=250 Identities=19% Similarity=0.164 Sum_probs=218.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+||+||++|||||++|||+++|++|+++|+ +|++++|+. +.++.+.++++..+.++..+++|+++.++++++++++.+
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIK 81 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 489999999999999999999999999996 999999874 567778888887788899999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++. +++||++||..+..
T Consensus 82 ~~G~iDiLVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~~Iv~isS~~~~~--------- 150 (261)
T d1geea_ 82 EFGKLDVMINNAGLENP-VSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDI-KGTVINMSSVHEKI--------- 150 (261)
T ss_dssp HHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-CCEEEEECCGGGTS---------
T ss_pred HhCCCCEeeccceecCC-cchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccc-cccccccccchhcc---------
Confidence 99999999999998755 46778999999999999999999999999999988763 35699999998874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+.+|+++||.|+ ++.||+||+|+||+|+|++.......
T Consensus 151 --------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~- 202 (261)
T d1geea_ 151 --------------------------PWPLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFAD- 202 (261)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHHHS-
T ss_pred --------------------------cCccccccccCCccchhhHHHHHHHh-hhhCcEEEEEeeCcCcCHhHhhhcCC-
Confidence 66788999999999999999999999 88899999999999999865442211
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCccc
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASF 330 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~ 330 (358)
...........|.+++.+|+|+|++++||+++.+.++||+.+..||+...+
T Consensus 203 ~~~~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~sl~ 253 (261)
T d1geea_ 203 PEQRADVESMIPMGYIGEPEEIAAVAAWLASSEASYVTGITLFADGGMTLY 253 (261)
T ss_dssp HHHHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGC
T ss_pred HHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCeeCC
Confidence 112223334557788999999999999999999989999999999987543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=5.5e-47 Score=344.26 Aligned_cols=247 Identities=20% Similarity=0.197 Sum_probs=218.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++.+.++++..+.++..+.+|+++.++++++++++.++
T Consensus 1 krL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (260)
T d1zema1 1 KKFNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD 79 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999999999999999888889999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|++|+||||||......++.+.+.++|++.+++|+.+++.++++++|+|.++. .|+||++||..+..
T Consensus 80 ~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~---------- 147 (260)
T d1zema1 80 FGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN--YGRIVNTASMAGVK---------- 147 (260)
T ss_dssp HSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHS----------
T ss_pred hCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhc--CCCCCeeechhhcc----------
Confidence 999999999999876555788999999999999999999999999999998875 49999999998874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL- 279 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~- 279 (358)
+.++...|+.||+|+.+|+++||.|+ ++.||+||+|+||+|+|+++.......
T Consensus 148 -------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~ 201 (260)
T d1zema1 148 -------------------------GPPNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQ 201 (260)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHH
T ss_pred -------------------------CCcchHHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEeccCcccCcchhhcchhhh
Confidence 56788899999999999999999999 888999999999999998754322111
Q ss_pred ------------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 280 ------------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 280 ------------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
...........|.+++.+|+|+|.+++||+++.+.++||+.+.+||+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG 260 (260)
T d1zema1 202 AKVGSQYFSTDPKVVAQQMIGSVPMRRYGDINEIPGVVAFLLGDDSSFMTGVNLPIAGG 260 (260)
T ss_dssp HHHTCTTSCSSHHHHHHHHHHTSTTSSCBCGGGSHHHHHHHHSGGGTTCCSCEEEESCC
T ss_pred hhhcccccccCHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCccCCeEEeCCC
Confidence 01111233455778899999999999999999999999999999984
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=4.6e-47 Score=344.22 Aligned_cols=247 Identities=20% Similarity=0.178 Sum_probs=215.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.|+||++|||||++|||+++|++|+++|+ +|++++|+.+.++...+++.. .+.++.++++|+++.++++++++++.+
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTE 79 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999996 999999999888887777643 355789999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|+||+||||||+.....++.+.+.++|++++++|+.+++.++++++|.|+++. .|+||++||..+..
T Consensus 80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~--------- 148 (258)
T d1iy8a_ 80 RFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG--SGMVVNTASVGGIR--------- 148 (258)
T ss_dssp HHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCGGGTS---------
T ss_pred HhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc--CCCCcccccHhhcc---------
Confidence 9999999999999876656788899999999999999999999999999998775 48999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+.+|+++||+|+ ++.||+||+|+||+++|++........
T Consensus 149 --------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~i~PG~v~T~~~~~~~~~~ 201 (258)
T d1iy8a_ 149 --------------------------GIGNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQL 201 (258)
T ss_dssp --------------------------BCSSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHHH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCceEEEEeeCcccCHHHHHHHhhc
Confidence 56788999999999999999999999 888999999999999998654322111
Q ss_pred -----hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 -----FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 -----~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|.+++.+|+|+|+.++||+++.+.++||+.|.+||+.
T Consensus 202 ~~~~~~~~~~~~~~~~pl~R~~~p~dvA~~v~fL~S~~s~~itG~~i~VDGG~ 254 (258)
T d1iy8a_ 202 DPENPRKAAEEFIQVNPSKRYGEAPEIAAVVAFLLSDDASYVNATVVPIDGGQ 254 (258)
T ss_dssp CTTCHHHHHHHHHTTCTTCSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTT
T ss_pred CcccHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEcCcch
Confidence 111222334456788999999999999999999989999999999975
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.2e-47 Score=340.41 Aligned_cols=240 Identities=21% Similarity=0.224 Sum_probs=213.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
||+||++|||||++|||+++|+.|+++|+ +|++++|+++.++.+.+++. .+...+++|+++.++++++++++.+++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 76 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG---ANGKGLMLNVTDPASIESVLEKIRAEF 76 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC---CCCcEEEEEecCHHHhhhhhhhhhccc
Confidence 68999999999999999999999999995 99999999999888888774 467889999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 77 g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~II~isS~~~~~----------- 142 (243)
T d1q7ba_ 77 GEVDILVNNAGITRD-NLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR--HGRIITIGSVVGTM----------- 142 (243)
T ss_dssp CSCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH-----------
T ss_pred CCcceehhhhhhccc-cccccccccccccccceeechhhhhHHHHHHHHHHcC--CCEeeeecchhhcC-----------
Confidence 999999999998755 4677899999999999999999999999999999875 48999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|++||+|+.+|++++|.|+ ++.||+||+|+||+++|++.......
T Consensus 143 ------------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~--- 194 (243)
T d1q7ba_ 143 ------------------------GNGGQANYAAAKAGLIGFSKSLAREV-ASRGITVNVVAPGFIETDMTRALSDD--- 194 (243)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHH---
T ss_pred ------------------------CCCCCHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecceEechhhhhhhhh---
Confidence 56788899999999999999999999 88899999999999999865432221
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........|.+++.+|+|+|+.++||+++.+.++||+.+..||+.
T Consensus 195 ~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itGq~i~vdGG~ 240 (243)
T d1q7ba_ 195 QRAGILAQVPAGRLGGAQEIANAVAFLASDEAAYITGETLHVNGGM 240 (243)
T ss_dssp HHHHHHTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTS
T ss_pred HHHHHHhcCCCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCe
Confidence 1223334567788999999999999999999989999999999974
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-46 Score=341.56 Aligned_cols=246 Identities=18% Similarity=0.157 Sum_probs=194.9
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.++..+.+|+++.++++++++++.+
T Consensus 3 ~F~LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (259)
T d1xq1a_ 3 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSS 81 (259)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999996 999999999999999999887778999999999999999999999999
Q ss_pred cC-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 120 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 120 ~~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++ +++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 82 ~~~g~idilvnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~-------- 150 (259)
T d1xq1a_ 82 MFGGKLDILINNLGAIRS-KPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG--CGNIIFMSSIAGVV-------- 150 (259)
T ss_dssp HHTTCCSEEEEECCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCEEEEEC--------------
T ss_pred HhCCCcccccccccccCC-CchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc--cccccccccccccc--------
Confidence 87 689999999998755 4677899999999999999999999999999999876 48999999999874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.||+|+.+|++++|.|+ ++.||+||+|+||+|+|++.......
T Consensus 151 ---------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~V~PG~i~T~~~~~~~~~ 202 (259)
T d1xq1a_ 151 ---------------------------SASVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDD 202 (259)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC----------
T ss_pred ---------------------------cccccccccccccchhhhhHHHHHHh-cccCeEEEEeccCcccCHHhhhhchH
Confidence 55677899999999999999999999 88899999999999999976443222
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|.+++||+++.+.++||+.|.+||+.
T Consensus 203 --~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~iTG~~i~vDGG~ 249 (259)
T d1xq1a_ 203 --EFKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGL 249 (259)
T ss_dssp -----------------CCGGGGHHHHHHHTSGGGTTCCSCEEECCCCE
T ss_pred --HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCcEEEeCCCE
Confidence 11223344567788899999999999999999989999999999974
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=3.1e-46 Score=335.69 Aligned_cols=235 Identities=18% Similarity=0.194 Sum_probs=211.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|++++++...+++. .+..++++|+++.++++++++++.+++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 78 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA---DAARYVHLDVTQPAQWKAAVDTAVTAF 78 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG---GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh---CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999996 99999999998888888774 578899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|+++. .|+||++||..+..
T Consensus 79 g~idilinnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~----------- 144 (244)
T d1nffa_ 79 GGLHVLVNNAGILNI-GTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG--RGSIINISSIEGLA----------- 144 (244)
T ss_dssp SCCCEEEECCCCCCC-BCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCCeEEEECCcccCC-CchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcC--cceEEecccccccc-----------
Confidence 999999999998755 4678999999999999999999999999999999876 48999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|+.+|+|++|+|+ ++.||+||+|+||+++|++...-
T Consensus 145 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~------ 193 (244)
T d1nffa_ 145 ------------------------GTVACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTDWV------ 193 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGTTS------
T ss_pred ------------------------ccccccchhhHHHHHHHHHHHHHHHh-cccCEEEEEEeeCCccChhHhhh------
Confidence 56788999999999999999999999 88899999999999999865321
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.....+.+.+++.+|+|+|++++||+++.+.++||+.|.+||+.
T Consensus 194 --~~~~~~~pl~R~~~p~diA~~v~fL~s~~s~~itG~~i~vDGG~ 237 (244)
T d1nffa_ 194 --PEDIFQTALGRAAEPVEVSNLVVYLASDESSYSTGAEFVVDGGT 237 (244)
T ss_dssp --CTTCSCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --hHHHHhccccCCCCHHHHHHHHHHHhChhhCCCcCCEEEECCCe
Confidence 11223345678899999999999999999889999999999975
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=5.5e-46 Score=335.86 Aligned_cols=245 Identities=20% Similarity=0.209 Sum_probs=214.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+.+.++.+.+++.. +.++.++++|+++.++++++++++.+++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGT-PDQIQFFQHDSSDEDGWTKLFDATEKAF 80 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCC-TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCC-CCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999996 999999999999988888864 4588999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
|+||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++. +++||++||..+..
T Consensus 81 G~iDiLVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~-gg~Ii~isS~~~~~----------- 147 (251)
T d1zk4a1 81 GPVSTLVNNAGIAVN-KSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGL-GASIINMSSIEGFV----------- 147 (251)
T ss_dssp SSCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSS-CEEEEEECCGGGTS-----------
T ss_pred CCceEEEeccccccc-cchhcccccchhhhccccccccchhHHHHHHHHHhcCC-CCceEeeeccceec-----------
Confidence 999999999999755 47889999999999999999999999999999998764 46999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|++++|+|+. .+.||+||+|+||+|+|++.......
T Consensus 148 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~-- 201 (251)
T d1zk4a1 148 ------------------------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGA-- 201 (251)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTH--
T ss_pred ------------------------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCH--
Confidence 567788999999999999999999841 57899999999999999865443222
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|+.++||+++.+.++||+.|.+||+.
T Consensus 202 ~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 248 (251)
T d1zk4a1 202 EEAMSQRTKTPMGHIGEPNDIAYICVYLASNESKFATGSEFVVDGGY 248 (251)
T ss_dssp HHHHTSTTTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhCCCcCcEEEECccc
Confidence 11222234456788999999999999999999989999999999963
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=4.2e-46 Score=338.55 Aligned_cols=245 Identities=22% Similarity=0.213 Sum_probs=207.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
|+||++|||||++|||+++|++|+++|+ +|++++|+ .+.++.+.+++.. .+.++.++++|+++.++++++++++.++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ 80 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999999996 99999987 4566666666643 3678999999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+|+||+||||||.... .++.+.+.++|++.|++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 81 ~G~iDiLVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~---------- 147 (260)
T d1x1ta1 81 MGRIDILVNNAGIQHT-ALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG--FGRIINIASAHGLV---------- 147 (260)
T ss_dssp HSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS----------
T ss_pred hCCCcEEEeecccccC-CchhhhhHHhhhhhhhccccccccccchhhhhHhhcC--CceEeeccccccee----------
Confidence 9999999999998755 4778899999999999999999999999999999876 48999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|++++|.|+ ++.||+||+|+||+|+|++.........
T Consensus 148 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 201 (260)
T d1x1ta1 148 -------------------------ASANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALA 201 (260)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC-----------
T ss_pred -------------------------ccCCcchhhhhhhhHHHhHHHHHHHh-chhCcEEEEEecCCCCChhhhhhhhhhh
Confidence 56788899999999999999999999 8889999999999999997644322110
Q ss_pred ---------hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 ---------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ---------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~~i~vDGG~ 257 (260)
T d1x1ta1 202 EKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGTTVSVDGGW 257 (260)
T ss_dssp -------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCCEEEECcch
Confidence 11112345667788999999999999999999999999999999963
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-46 Score=337.44 Aligned_cols=241 Identities=19% Similarity=0.203 Sum_probs=210.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++.+.+++. +..++++|+++.++++++++++.+++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~----~~~~~~~Dvs~~~~v~~~~~~~~~~~ 77 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELP----GAVFILCDVTQEDDVKTLVSETIRRF 77 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCT----TEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEccCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999996 99999999988888877763 57899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++||+||||||.......+.+.+.++|++.+++|+.+++.++++++|+|++++ |+||++||..+..
T Consensus 78 g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---G~Ii~isS~~~~~----------- 143 (250)
T d1ydea1 78 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ---GNVINISSLVGAI----------- 143 (250)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCHHHHH-----------
T ss_pred CCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC---CCCcccccccccc-----------
Confidence 99999999999876555677899999999999999999999999999998763 8999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch---h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI---P 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~---~ 278 (358)
+.++...|+.||+|+.+|+++||+|+ ++.||+||+|+||+|+|++...-.. .
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 198 (250)
T d1ydea1 144 ------------------------GQAQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPD 198 (250)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSS
T ss_pred ------------------------cccCcchhHHHHhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHHhhcCCC
Confidence 55778899999999999999999999 8889999999999999986533111 1
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............|.+++.+|+|+|++++||+++ +.++||+.+.+||+.
T Consensus 199 ~~~~~~~~~~~~pl~R~g~p~eva~~v~fL~Sd-a~~itG~~i~vDGG~ 246 (250)
T d1ydea1 199 PRASIREGMLAQPLGRMGQPAEVGAAAVFLASE-ANFCTGIELLVTGGA 246 (250)
T ss_dssp HHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHHH-CTTCCSCEEEESTTT
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhCc-cCCCcCCeEEECCCc
Confidence 112223334455778899999999999999986 678999999999974
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=6.7e-46 Score=336.32 Aligned_cols=245 Identities=16% Similarity=0.135 Sum_probs=213.6
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++...+++ +.++.++++|+++.++++++++++.++
T Consensus 1 M~L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T d1k2wa_ 1 MRLDGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---GPAACAIALDVTDQASIDRCVAELLDR 76 (256)
T ss_dssp CTTTTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---CTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEeeCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999995 9999999998888888877 367899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||.... .++.+.+.++|++.+++|+.|++.++++++|.|.++.. +|+||++||..+..
T Consensus 77 ~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~-~g~Iv~isS~~~~~---------- 144 (256)
T d1k2wa_ 77 WGSIDILVNNAALFDL-APIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGR-GGKIINMASQAGRR---------- 144 (256)
T ss_dssp HSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS----------
T ss_pred hCCccEEEeecccccc-cccccCCHHHHHhhhceeeeccccchhhccchhHHhcc-CCccccccchhhcc----------
Confidence 9999999999998754 46778999999999999999999999999998765432 48999999999874
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|++||+|+.+|++++|+|+ ++.||+||+|+||+++|+++..-.....
T Consensus 145 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~i~T~~~~~~~~~~~ 198 (256)
T d1k2wa_ 145 -------------------------GEALVGVYCATKAAVISLTQSAGLNL-IRHGINVNAIAPGVVDGEHWDGVDAKFA 198 (256)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTHHHHHHHHH
T ss_pred -------------------------ccccccchhhhhhHHHHHHHHHHHHh-cccCeEEEEEecCCCCchhhhhhhhhhh
Confidence 66788999999999999999999999 8889999999999999997543221111
Q ss_pred --------hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 --------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 --------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|.+++||+++.+.++||+.|.+||+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~PlgR~~~p~evA~~v~fL~S~~a~~iTG~~i~vDGG~ 253 (256)
T d1k2wa_ 199 DYENLPRGEKKRQVGAAVPFGRMGRAEDLTGMAIFLATPEADYIVAQTYNVDGGN 253 (256)
T ss_dssp HHHTCCTTHHHHHHHHHSTTSSCBCHHHHHHHHHHTTSGGGTTCCSCEEEESTTS
T ss_pred hhccCChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEECcch
Confidence 11122334567788999999999999999999999999999999974
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=4e-46 Score=335.96 Aligned_cols=243 Identities=18% Similarity=0.172 Sum_probs=200.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|+||++|||||++|||+++|+.|+++|+ +|++++|++.+ ...+.++..+.++.++++|+++.++++++++++.+++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~--~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 78 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAP--EAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTF 78 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH--HHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999996 99999998643 2233344456789999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
|+||+||||||+... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 79 G~iDilVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~Iv~isS~~~~~----------- 144 (247)
T d2ew8a1 79 GRCDILVNNAGIYPL-IPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG--WGRIINLTSTTYWL----------- 144 (247)
T ss_dssp SCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGGS-----------
T ss_pred CCCCEEEECCCCCCC-CChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC--CCCccccccchhcc-----------
Confidence 999999999998754 5778899999999999999999999999999999876 49999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|++||+|+.+|+++||.|+ ++.||+||+|+||+++|++..........
T Consensus 145 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 199 (247)
T d2ew8a1 145 ------------------------KIEAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAMF 199 (247)
T ss_dssp ------------------------CCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC--------------
T ss_pred ------------------------cCcccccchhhhccHHHHHHHHHHHh-cccCeEEEEEeeCCCCCccccccccchhH
Confidence 56778899999999999999999999 88899999999999999976443222111
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ....+.+++.+|+|+|+.++||+++.+.++||+.+.+||+.
T Consensus 200 ~~~~-~~~~~l~r~~~pedvA~~v~fL~S~~s~~itG~~i~vDGG~ 244 (247)
T d2ew8a1 200 DVLP-NMLQAIPRLQVPLDLTGAAAFLASDDASFITGQTLAVDGGM 244 (247)
T ss_dssp -----CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESSSC
T ss_pred HHHH-HHhccCCCCCCHHHHHHHHHHHhCchhcCCcCCeEEECCCE
Confidence 1111 11124457889999999999999999889999999999974
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=2.3e-46 Score=339.74 Aligned_cols=244 Identities=19% Similarity=0.182 Sum_probs=214.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.||++|||||++|||+++|+.|+++|+ +|++++|++++++++.++++..+.++.++++|+++.++++++++++.+++++
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~ 79 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP 79 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 389999999999999999999999996 9999999999999999999888889999999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHH--hcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDL--KQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l--~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+| .+++ .++||+++|..+..
T Consensus 80 iDilVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~--~g~Ii~i~S~~~~~----------- 145 (257)
T d2rhca1 80 VDVLVNNAGRPGG-GATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERG--TGRIVNIASTGGKQ----------- 145 (257)
T ss_dssp CSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHT--EEEEEEECCGGGTS-----------
T ss_pred CCEEEecccccCC-CChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcC--Cccccccccccccc-----------
Confidence 9999999998754 567789999999999999999999999999974 4443 48999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh--
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-- 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-- 279 (358)
+.++...|++||+|+.+|+|+||.|+ ++.||+||+|+||+|+|++...-....
T Consensus 146 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~ 200 (257)
T d2rhca1 146 ------------------------GVVHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSD 200 (257)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECSBCSHHHHHHHHHHHH
T ss_pred ------------------------ccccchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCHHHHHHHhhhhh
Confidence 66788999999999999999999999 888999999999999998653321111
Q ss_pred ------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|.+++.+|+|+|+.++||+++.+.++||+.+..||+.
T Consensus 201 ~~~~~~~e~~~~~~~~~PlgR~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 254 (257)
T d2rhca1 201 IWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYLIGPGAAAVTAQALNVCGGL 254 (257)
T ss_dssp HTTCCHHHHHHHHHTTSTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTC
T ss_pred hcccChHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEECcCc
Confidence 112223344567788999999999999999999999999999999974
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=7.1e-46 Score=336.03 Aligned_cols=244 Identities=19% Similarity=0.143 Sum_probs=214.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|++|||||++|||+++|++|+++|+ +|++++|++++++.+.+++...+.++.++++|+++.++++++++++.+++|+|
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGF 79 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 37899999999999999999999996 99999999999999999998888899999999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... .++.+.+.++|++.+++|+.|++.++++++|+|.+++. +++||++||..+..
T Consensus 80 DilVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-~g~Iv~isS~~~~~-------------- 143 (255)
T d1gega_ 80 DVIVNNAGVAPS-TPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGH-GGKIINACSQAGHV-------------- 143 (255)
T ss_dssp CEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTS-CEEEEEECCGGGTS--------------
T ss_pred cEEEeccccccc-CcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhcc-ccccccccchhhcc--------------
Confidence 999999998754 57788999999999999999999999999998876642 47899999998874
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-----
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL----- 279 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~----- 279 (358)
+.++...|++||+|+.+|+++||.|+ ++.||+||+|+||+++|+++.......
T Consensus 144 ---------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~ 201 (255)
T d1gega_ 144 ---------------------GNPELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAG 201 (255)
T ss_dssp ---------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHT
T ss_pred ---------------------cCcccccchhCHHHHHhhHHHHHHHh-hhhCcEEEEEecCcccChHHhhhhhhhHhhhc
Confidence 66788999999999999999999999 888999999999999998654321111
Q ss_pred ---hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 ---FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ---~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|.+|+.+|+|+|+.++||+++.+.++||+.+..||+.
T Consensus 202 ~~~~~~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 252 (255)
T d1gega_ 202 KPLGYGTAEFAKRITLGRLSEPEDVAACVSYLASPDSDYMTGQSLLIDGGM 252 (255)
T ss_dssp CCTTHHHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESSSS
T ss_pred ccchhHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCcEEEecCCE
Confidence 111122334567788999999999999999999989999999999974
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.9e-45 Score=337.18 Aligned_cols=277 Identities=16% Similarity=0.197 Sum_probs=231.4
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-----CCCceEEEEecCCCHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-----AKENYTIMHLDLASLDSVRQF 113 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-----~~~~i~~~~~Dl~~~~~i~~~ 113 (358)
.+..|+||++|||||++|||+++|++|+++|+ +|++++|+.++++...+++.. .+.++..+++|+++.++++++
T Consensus 6 ~~g~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~ 84 (297)
T d1yxma1 6 APGLLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNL 84 (297)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHH
Confidence 33469999999999999999999999999996 999999999888888777643 356899999999999999999
Q ss_pred HHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCc
Q 018331 114 VDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTL 193 (358)
Q Consensus 114 ~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~ 193 (358)
++++.+.++++|+||||||.... ..+.+.+.+.|++.+++|+.+++.++++++|.|.+++ .++||++||....
T Consensus 85 ~~~~~~~~G~iDiLVnnAg~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~Ii~~ss~~~~---- 157 (297)
T d1yxma1 85 VKSTLDTFGKINFLVNNGGGQFL-SPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEH--GGSIVNIIVPTKA---- 157 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHH--CEEEEEECCCCTT----
T ss_pred HHHHHHHhCCeEEEEeecccccc-CchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccc--ccccccccccccc----
Confidence 99999999999999999998754 4677899999999999999999999999999999876 3789988764332
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||+|+.+|+|++|.|+ ++.||+||+|+||+|+|++..
T Consensus 158 --------------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~ 204 (297)
T d1yxma1 158 --------------------------------GFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAV 204 (297)
T ss_dssp --------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGG
T ss_pred --------------------------------cccccccchhHHHHHHHHHHHHHHHh-cccCceEEEeeeCcCcCcchh
Confidence 45678899999999999999999999 888999999999999999765
Q ss_pred ccchhhhhh-hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccc--------hhccCHHHH
Q 018331 274 REHIPLFRL-LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLS--------QEASDVEKA 344 (358)
Q Consensus 274 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~--------~~~~~~~~~ 344 (358)
......... ........|.+++.+|+|+|.+++||+++.+.++||+.+.+||+...+..... ....+.+..
T Consensus 205 ~~~~~~~~~~~~~~~~~~plgR~g~pedvA~~v~fL~Sd~s~~iTG~~i~VDGG~sl~~~~~~~~~~~~~~~~~~~~~~~ 284 (297)
T d1yxma1 205 ENYGSWGQSFFEGSFQKIPAKRIGVPEEVSSVVCFLLSPAASFITGQSVDVDGGRSLYTHSYEVPDHDNWPKGAGDLSVV 284 (297)
T ss_dssp TTSGGGGGGGGTTGGGGSTTSSCBCTHHHHHHHHHHHSGGGTTCCSCEEEESTTGGGCBTTCCCCCCSCCCCCSSCCHHH
T ss_pred hhccccCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCcEEEeCcChhhhcCCCCCCCcccccccCCchHHH
Confidence 544333222 23444566778899999999999999999999999999999998755322211 222355777
Q ss_pred HHHHHHHHHHhc
Q 018331 345 RKVWEISEKLVG 356 (358)
Q Consensus 345 ~~~w~~~~~~~~ 356 (358)
+++|+..++..+
T Consensus 285 ~~~~~~~~~~~~ 296 (297)
T d1yxma1 285 KKMKETFKEKAK 296 (297)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHhhHHhcc
Confidence 888887766544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=8.1e-46 Score=334.91 Aligned_cols=240 Identities=20% Similarity=0.156 Sum_probs=211.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
||+||++|||||++|||+++|++|+++|+ +|++++|+.++++...+++ +.++.++++|+++.++++++++++.+++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 77 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---GDAARYQHLDVTIEEDWQRVVAYAREEF 77 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---GGGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---CCceEEEEcccCCHHHHHHHHHHHHHHc
Confidence 69999999999999999999999999996 9999999998888777766 3678999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 78 g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~--~G~II~isS~~~~~----------- 143 (254)
T d1hdca_ 78 GSVDGLVNNAGISTG-MFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG--GGSIVNISSAAGLM----------- 143 (254)
T ss_dssp SCCCEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS-----------
T ss_pred CCccEEEecCccccc-cccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC--CCeecccccchhcc-----------
Confidence 999999999998754 5677899999999999999999999999999999876 49999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|+.+|+++||.|+ ++.||+||+|+||+|+|++.......
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~v~T~~~~~~~~~--- 195 (254)
T d1hdca_ 144 ------------------------GLALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIR--- 195 (254)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHTCC---
T ss_pred ------------------------cccchhhHHHHHHHHHHHHHHHHHHh-CCCceEEEEeeeCcccCccchhcCHH---
Confidence 56788899999999999999999999 88899999999999999865432211
Q ss_pred hhcchhHHhhhcCcc-chhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYV-SEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~-~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++. .|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 196 ~~~~~~~~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~~i~vDGG~ 242 (254)
T d1hdca_ 196 QGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGAELAVDGGW 242 (254)
T ss_dssp CSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHhchhhCCCCCceEEeCCCc
Confidence 122233445566664 6999999999999999989999999999975
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.9e-45 Score=329.27 Aligned_cols=238 Identities=19% Similarity=0.144 Sum_probs=207.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|+.|+++|+ +|++++|+++++++..+++ +..++++|+++.++++++++++.++
T Consensus 1 M~L~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (242)
T d1ulsa_ 1 MRLKDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV-----GAHPVVMDVADPASVERGFAEALAH 74 (242)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT-----TCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc-----CCeEEEEecCCHHHHHHHHHHHHHh
Confidence 469999999999999999999999999996 9999999998888877665 4678999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||+... .++.+.+.++|++.+++|+.+++.++|+++|+|++++ .++|+++||....
T Consensus 75 ~g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~~~i~~~ss~~~~----------- 140 (242)
T d1ulsa_ 75 LGRLDGVVHYAGITRD-NFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN--PGSIVLTASRVYL----------- 140 (242)
T ss_dssp HSSCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CEEEEEECCGGGG-----------
T ss_pred cCCceEEEECCccccc-CchhhCcchhhhccccccchhhhhhhhhccccccccc--cceeeeecccccc-----------
Confidence 9999999999998755 5777899999999999999999999999999999876 3677777664322
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|+++||+|+ ++.||+||+|+||+++|++.......
T Consensus 141 -------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~-- 192 (242)
T d1ulsa_ 141 -------------------------GNLGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEK-- 192 (242)
T ss_dssp -------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSSSCHH--
T ss_pred -------------------------CCCCCcchHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCcccChhhhcCCHH--
Confidence 45678899999999999999999999 88899999999999999976442211
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 193 -~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 238 (242)
T d1ulsa_ 193 -VREKAIAATPLGRAGKPLEVAYAALFLLSDESSFITGQVLFVDGGR 238 (242)
T ss_dssp -HHHHHHHTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -HHHHHHhcCCCCCCCCHHHHHHHHHHHhchhhCCCCCcEEEECCCc
Confidence 1223445667788999999999999999999999999999999975
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=9.2e-45 Score=331.07 Aligned_cols=248 Identities=19% Similarity=0.210 Sum_probs=210.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|++|+++|+ +|++++|+++.++++.+++... .++.++++|+++.++++++++++.+++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSP-DVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT-TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCC-CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 58999999999999999999999999996 9999999999999999888654 457889999999999999999999999
Q ss_pred CCccEEEEcccccCCC-CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++|+||||||..... ..+.+.+.++|++.+++|+.+++.++|+++|+|++++ .|+||++||..+..+
T Consensus 81 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~g~ii~iss~~~~~~--------- 149 (268)
T d2bgka1 81 GKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK--KGSIVFTASISSFTA--------- 149 (268)
T ss_dssp SCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT--CEEEEEECCGGGTCC---------
T ss_pred CCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC--CCCcccccccccccc---------
Confidence 9999999999987543 3466889999999999999999999999999999876 489999999987741
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+....|++||+|+.+|++++|.|+ ++.||+||+|+||+++|++.........
T Consensus 150 -------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~ 203 (268)
T d2bgka1 150 -------------------------GEGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGVDS 203 (268)
T ss_dssp -------------------------CTTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSCCH
T ss_pred -------------------------ccccccccchhHHHHHhCHHHHHHHh-ChhCeEEEecCCCCccChHHhhhhcCCH
Confidence 22334579999999999999999999 8889999999999999997654332211
Q ss_pred hhhcchhH--HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 281 RLLFPPFQ--KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 281 ~~~~~~~~--~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
........ ..+.+++.+|+|+|++++||+++.+.++||+.|.+||+..
T Consensus 204 ~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itGq~i~VDGG~t 253 (268)
T d2bgka1 204 SRVEELAHQAANLKGTLLRAEDVADAVAYLAGDESKYVSGLNLVIDGGYT 253 (268)
T ss_dssp HHHHHHHHHTCSSCSCCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG
T ss_pred HHHHHHHHhccccCCCCcCHHHHHHHHHHHhChhhCCccCceEEECcCcc
Confidence 11111111 2244578899999999999999999899999999999853
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=2.8e-45 Score=330.41 Aligned_cols=240 Identities=19% Similarity=0.186 Sum_probs=205.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++..+ ..+++ ...++++|+++.++++++++++.+++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~-~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~ 74 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKE-VAEAI-----GGAFFQVDLEDERERVRFVEEAAYAL 74 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHH-HHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHH-HHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999996 9999999976544 33333 34678999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
|+||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 75 G~iDiLVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~Ii~isS~~~~~----------- 140 (248)
T d2d1ya1 75 GRVDVLVNNAAIAAP-GSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG--GGAIVNVASVQGLF----------- 140 (248)
T ss_dssp SCCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT--CEEEEEECCGGGTS-----------
T ss_pred CCCCeEEEeCcCCCC-CChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc--cccccccccccccc-----------
Confidence 999999999998755 4778999999999999999999999999999999876 48999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--hh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI--PL 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~--~~ 279 (358)
+.++...|+.||+|+.+|++.+|+|+ ++.||+||+|+||+++|++...... +.
T Consensus 141 ------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~ 195 (248)
T d2d1ya1 141 ------------------------AEQENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPD 195 (248)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC----
T ss_pred ------------------------cccccchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCchHHHHhhcCCC
Confidence 56788999999999999999999999 8889999999999999986644221 11
Q ss_pred hhhhc-chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLF-PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~-~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..... ......+.+++.+|+|+|..++||+++.+.++||+.|..||+.
T Consensus 196 ~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~s~~itG~~i~vDGG~ 244 (248)
T d2d1ya1 196 PERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGAILPVDGGM 244 (248)
T ss_dssp ----CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCcEEEcCcCc
Confidence 11112 2233456678899999999999999999989999999999974
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=8.3e-45 Score=329.32 Aligned_cols=248 Identities=20% Similarity=0.182 Sum_probs=216.2
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++|+||++|||||++|||+++|+.|+++|+ +|++++|++++++++.+++...+.+++++.+|+++.++++++++++.+
T Consensus 1 ~f~L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 79 (258)
T d1ae1a_ 1 RWSLKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAH 79 (258)
T ss_dssp CCCCTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999999995 999999999999999999988888999999999999999999999999
Q ss_pred cC-CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 120 SG-RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 120 ~~-~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++ +.+|+||||||.... ..+.+++.++|++++++|+.+++.++++++|.|.++. .|+||++||..+..
T Consensus 80 ~~~g~idilinnag~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~--~g~ii~isS~~~~~-------- 148 (258)
T d1ae1a_ 80 VFDGKLNILVNNAGVVIH-KEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ--NGNVIFLSSIAGFS-------- 148 (258)
T ss_dssp HTTSCCCEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--SEEEEEECCGGGTS--------
T ss_pred HhCCCcEEEecccccccc-CccccCCHHHHhhhhhhcccccccccccccccccccc--cccccccccccccc--------
Confidence 87 689999999999765 4778999999999999999999999999999999876 49999999999874
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
+.++...|+.+|+|+++|++.+|+|+ ++.||+||+|+||+++|++..+....
T Consensus 149 ---------------------------~~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~ 200 (258)
T d1ae1a_ 149 ---------------------------ALPSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKK 200 (258)
T ss_dssp ---------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC----------
T ss_pred ---------------------------ccccchhHHHHHHHHHHHHHHHHHhc-CcCcEEEEEEeeCcccCcchhhhhhh
Confidence 66788999999999999999999999 88899999999999999976543221
Q ss_pred ---hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 ---LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ---~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........+.|.+++.+|+|+|++++||+++.+.++||+.+..||+-
T Consensus 201 ~~~~~~~~~~~~~~~plgR~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~ 252 (258)
T d1ae1a_ 201 NPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGF 252 (258)
T ss_dssp ---CHHHHHHHHHHSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred hhhhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCcEEEeCCCe
Confidence 1122234445667788999999999999999999999999999999974
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=6.2e-45 Score=326.01 Aligned_cols=234 Identities=22% Similarity=0.263 Sum_probs=199.2
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++.|+||++|||||++|||+++|++|+++|+ +|++++|+.+. ..++..+++|+++.++++++++++.+
T Consensus 2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~-----------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 69 (237)
T d1uzma1 2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGA-----------PKGLFGVEVDVTDSDAVDRAFTAVEE 69 (237)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCC-----------CTTSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcch-----------hcCceEEEEecCCHHHHHHHHHHHHH
Confidence 4579999999999999999999999999995 99999998543 24678899999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++||+||||||.... .++.+.+.++|++++++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 70 ~~g~iDiLVnnAG~~~~-~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~Iv~isS~~~~~--------- 137 (237)
T d1uzma1 70 HQGPVEVLVSNAGLSAD-AFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK--FGRMIFIGSVSGLW--------- 137 (237)
T ss_dssp HHSSCSEEEEECSCCC------CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCCC-----------
T ss_pred hcCCceEEEeeeccccc-ccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC--CCceEEEcchhhcc---------
Confidence 99999999999998755 4778899999999999999999999999999999886 48999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|++||+|+.+|+++++.|+ .+.||+||+|+||+++|++...- ..
T Consensus 138 --------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~-~~- 188 (237)
T d1uzma1 138 --------------------------GIGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRAL-DE- 188 (237)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHS-CH-
T ss_pred --------------------------CCcccHHHHHHHHHHHHHHHHHHhhh-hcCCceeeeeeeCcCCChhhhcc-CH-
Confidence 55778899999999999999999999 88899999999999999865332 11
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 189 -~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~vdGG~ 235 (237)
T d1uzma1 189 -RIQQGALQFIPAKRVGTPAEVAGVVSFLASEDASYISGAVIPVDGGM 235 (237)
T ss_dssp -HHHHHHGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred -HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCC
Confidence 11122334567788999999999999999999989999999999974
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=3.2e-45 Score=329.37 Aligned_cols=239 Identities=18% Similarity=0.160 Sum_probs=209.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+++|||||++|||+++|++|+++|+ +|++. .|+.+.++.+.++++..+.++.++++|+++.++++++++++.++++++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999996 77775 667778888888888778899999999999999999999999999999
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ +|+||++||..+..
T Consensus 81 DiLVnnAg~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~G~IVnisS~~~~~-------------- 143 (244)
T d1edoa_ 81 DVVVNNAGITRD-TLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKR--KGRIINIASVVGLI-------------- 143 (244)
T ss_dssp SEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCTHHHH--------------
T ss_pred Cccccccccccc-cchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcC--CcEEEEEcChhhcC--------------
Confidence 999999998755 4778899999999999999999999999999998875 49999999999874
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
+.++...|+.||+|+.+|+++|+.|+ ++.||+||+|+||+++|++...-. . ....
T Consensus 144 ---------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~-~--~~~~ 198 (244)
T d1edoa_ 144 ---------------------GNIGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLG-E--DMEK 198 (244)
T ss_dssp ---------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTC-H--HHHH
T ss_pred ---------------------CCCCCHHHHHHHHHHHHChHHHHHHH-hhhCcEEEEEecceeccHHHHHhh-H--HHHH
Confidence 56778899999999999999999999 888999999999999998654322 1 1112
Q ss_pred chhHHhhhcCccchhHHhhhhhhhh-cCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVV-SDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~-~~~~~~~~G~~~~~d~~~ 327 (358)
......|.+++.+|+|+|++++||+ ++.+.++||+.+..||+.
T Consensus 199 ~~~~~~pl~R~~~p~dvA~~v~fLa~S~~a~~itG~~i~vdGG~ 242 (244)
T d1edoa_ 199 KILGTIPLGRTGQPENVAGLVEFLALSPAASYITGQAFTIDGGI 242 (244)
T ss_dssp HHHTSCTTCSCBCHHHHHHHHHHHHHCSGGGGCCSCEEEESTTT
T ss_pred HHHhcCCCCCCcCHHHHHHHHHHHHCCchhcCCcCCeEEeCCCe
Confidence 2334566788999999999999996 787788999999999964
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=5.7e-45 Score=329.45 Aligned_cols=242 Identities=19% Similarity=0.175 Sum_probs=209.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++.++++.+++. .+..++++|+++.++++++++++.+++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~~ 78 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELG---ERSMFVRHDVSSEADWTLVMAAVQRRL 78 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHC---TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC---CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999996 99999999988888888774 578899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.... ..+.+.+.++|++.+++|+.+++.++++++|+|+++ +|+||++||..+..
T Consensus 79 g~iDilVnnAG~~~~-~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~---~G~Iv~isS~~~~~----------- 143 (253)
T d1hxha_ 79 GTLNVLVNNAGILLP-GDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET---GGSIINMASVSSWL----------- 143 (253)
T ss_dssp CSCCEEEECCCCCCC-BCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT---CEEEEEECCGGGTS-----------
T ss_pred CCCCeEEecccccCC-CCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CCceecccchhhhc-----------
Confidence 999999999998755 467899999999999999999999999999999875 38999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhccc--CCcEEEEecCCcccCCcccccchh-
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEE--TGIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~--~gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
+.++...|+.||+|+.+|++++|+|+ ++ .+|+||+|+||+++|++.......
T Consensus 144 ------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~g~~IrVN~I~PG~i~T~~~~~~~~~~ 198 (253)
T d1hxha_ 144 ------------------------PIEQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQASLPKG 198 (253)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHHHSCTT
T ss_pred ------------------------CccccccccchhHHHHHHHHHHHHHH-hhcCCCEEEEEEeECCCcCHhHHhhCcch
Confidence 56788899999999999999999999 54 469999999999999865432211
Q ss_pred -hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 -LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+.+++.+|+|+|++++||+++.+.++||+.+.+||..
T Consensus 199 ~~~~~~~~~~~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 248 (253)
T d1hxha_ 199 VSKEMVLHDPKLNRAGRAYMPERIAQLVLFLASDESSVMSGSELHADNSI 248 (253)
T ss_dssp CCHHHHBCBTTTBTTCCEECHHHHHHHHHHHHSGGGTTCCSCEEEESSSC
T ss_pred hhHHHHHhCccccccCCCCCHHHHHHHHHHHhChhhCCCcCcEEEECccH
Confidence 1111122222334467889999999999999999999999999999974
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.5e-44 Score=324.55 Aligned_cols=239 Identities=19% Similarity=0.205 Sum_probs=204.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
+||+||++|||||++|||+++|++|+++|+ +|++++|+++++++..+++. .+.++.+|+++.+++++++ ++
T Consensus 1 mdl~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~~~~~v~~~~----~~ 71 (242)
T d1cyda_ 1 LNFSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECP----GIEPVCVDLGDWDATEKAL----GG 71 (242)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HH
Confidence 479999999999999999999999999995 99999999988888877763 5788999999999876655 46
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+++||+||||||.... .++.+.+.++|++.+++|+.+++.+++.++|.|.++.. +|+||+++|..+..
T Consensus 72 ~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~ii~isS~~~~~---------- 139 (242)
T d1cyda_ 72 IGPVDLLVNNAALVIM-QPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGV-PGSIVNVSSMVAHV---------- 139 (242)
T ss_dssp CCCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS----------
T ss_pred cCCCeEEEECCccccc-hhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcc-cCcccccchhhccc----------
Confidence 7999999999998754 47788999999999999999999999999998765432 48999999998774
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhh
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|+.||+|+.+|+|+||.|+ ++.||+||+|+||+++|++..... ...
T Consensus 140 -------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~-~~~ 192 (242)
T d1cyda_ 140 -------------------------TFPNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVS-ADP 192 (242)
T ss_dssp -------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHT-CCH
T ss_pred -------------------------cCCccccccchHHHHHHHHHHHHHHh-CccCeecccCCCCCccCHHHHhhc-CCH
Confidence 56788899999999999999999999 888999999999999998543321 111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..........|.+++.+|+|+|++++||+++.+.++||+.|..||+.
T Consensus 193 ~~~~~~~~~~pl~R~~~peeva~~v~fL~S~~s~~itG~~i~vDGG~ 239 (242)
T d1cyda_ 193 EFARKLKERHPLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAGY 239 (242)
T ss_dssp HHHHHHHHHSTTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTTG
T ss_pred HHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCcCCceEEeCcch
Confidence 22233445667788999999999999999999989999999999863
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.4e-44 Score=329.07 Aligned_cols=247 Identities=18% Similarity=0.177 Sum_probs=202.0
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.|+||++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++... ..++.++++|+++.++++++++++.
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~ 80 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTL 80 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHH
Confidence 58999999999999999999999999996 9999999999999888887654 3468999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCC---CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 119 RSGRPLDVLVCNAAVYLPT---AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
++++++|+||||||..... ..+.+.+.++|++.+++|+.+++.++++++|+|+++. |.+|+++|..+..
T Consensus 81 ~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~S~~~~~----- 152 (264)
T d1spxa_ 81 GKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK---GEIVNISSIASGL----- 152 (264)
T ss_dssp HHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCTTSSS-----
T ss_pred HHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc---Ccceeeeeecccc-----
Confidence 9999999999999986322 2345668899999999999999999999999998874 6888887765432
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
.+.++...|+.||+|+.+|+++||+|+ ++.||+||+|+||+|+|++....
T Consensus 153 -----------------------------~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~v~T~~~~~~ 202 (264)
T d1spxa_ 153 -----------------------------HATPDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAM 202 (264)
T ss_dssp -----------------------------SCCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC----
T ss_pred -----------------------------ccCCCchhhhhhhhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCCcchhcc
Confidence 256778899999999999999999999 88899999999999999866442
Q ss_pred chh------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeecCCCC
Q 018331 276 HIP------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~d~~~ 327 (358)
..+ ............|.+++.+|+|+|++++||++++ +.++||+.|..||+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pedvA~~v~fL~S~~~s~~itG~~i~vDGG~ 261 (264)
T d1spxa_ 203 GMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGS 261 (264)
T ss_dssp ----------HHHHHHHHHHCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTG
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCCcccCCccCceEEeCCCh
Confidence 211 1112223344567788999999999999999965 667999999999974
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=3.3e-44 Score=328.03 Aligned_cols=248 Identities=17% Similarity=0.161 Sum_probs=207.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
|.|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.+++... +.++.++++|+++.++++++++++
T Consensus 1 prL~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 79 (272)
T d1xkqa_ 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINST 79 (272)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHH
Confidence 468999999999999999999999999996 9999999999999988888654 346899999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCC---CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC-CCCCCCc
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAK---EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI-TGNTNTL 193 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~-~~~~~~~ 193 (358)
.+++++||+||||||....... ..+.+.+.|++++++|+.+++.++++++|+|+++. +.+|+++|. ++..
T Consensus 80 ~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~---g~iI~~~Ss~a~~~--- 153 (272)
T d1xkqa_ 80 LKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK---GEIVNVSSIVAGPQ--- 153 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGSSS---
T ss_pred HHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC---Cccccccchhcccc---
Confidence 9999999999999998754321 13456778999999999999999999999998764 577777664 4442
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccc
Q 018331 194 AGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~ 273 (358)
+.++...|+.||+|+.+|+++||.|+ ++.||+||+|+||+|+|++..
T Consensus 154 --------------------------------~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~ 200 (272)
T d1xkqa_ 154 --------------------------------AQPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTN 200 (272)
T ss_dssp --------------------------------CCCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHH
T ss_pred --------------------------------CCCCcchhhhHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcchhhh
Confidence 56788999999999999999999999 888999999999999998654
Q ss_pred ccchhh------hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCC-CCCCceeeecCCCCc
Q 018331 274 REHIPL------FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS-LTKSGVYWSWNKDSA 328 (358)
Q Consensus 274 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~-~~~~G~~~~~d~~~~ 328 (358)
....+. ...........|.+++.+|+|+|++++||++++. .++||+.+..||+..
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~g~pediA~~v~fL~S~~as~~iTG~~i~vDGG~~ 262 (272)
T d1xkqa_ 201 AMGMPDQASQKFYNFMASHKECIPIGAAGKPEHIANIILFLADRNLSFYILGQSIVADGGTS 262 (272)
T ss_dssp HTTCCHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred ccCCchHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHhCcchhCCccCeEEEeCcCHH
Confidence 322111 1111122234567889999999999999999764 569999999999863
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=2.4e-44 Score=326.88 Aligned_cols=256 Identities=17% Similarity=0.209 Sum_probs=214.1
Q ss_pred cCcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc-CCCCceEEEEecCCCHHHHHHHHHH
Q 018331 38 QGKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 38 ~~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.-.++++||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++. ..+.++.++++|+++.+++++++++
T Consensus 2 ~~~m~l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~ 80 (260)
T d1h5qa_ 2 GFTISFVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQ 80 (260)
T ss_dssp CEEECCTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCcccCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHH
Confidence 344689999999999999999999999999995 99999999888777766663 3467899999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.++++++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|.++.. +++|++++|..........
T Consensus 81 ~~~~~g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~-~g~i~~~~s~~~~~~~~~~- 157 (260)
T d1h5qa_ 81 IDADLGPISGLIANAGVSVV-KPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQ-KGSIVVTSSMSSQIINQSS- 157 (260)
T ss_dssp HHHHSCSEEEEEECCCCCCC-SCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTSCCEEE-
T ss_pred HHHHhCCCcEeccccccccc-CCHHHhccccccccccccccchhhhhhhhccccccccc-ceEEEEeeccccccccccc-
Confidence 99999999999999998754 56778999999999999999999999999999865542 4788888887655321100
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
..+.++...|+.||+|+.+|+|.+|.|+ ++.||+||+|+||+|+|++.....
T Consensus 158 ---------------------------~~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~ 209 (260)
T d1h5qa_ 158 ---------------------------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMD 209 (260)
T ss_dssp ---------------------------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSC
T ss_pred ---------------------------cccCccccchhhhhhhHHHHHHHHHHHh-chhCeEEeecCCCcccCcchhccC
Confidence 0133567789999999999999999999 888999999999999998664422
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
. ..........|.+++.+|+|+|+.++||+++.+.++||+.|.+||+..
T Consensus 210 ~---~~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~itG~~i~VDGG~~ 258 (260)
T d1h5qa_ 210 K---KIRDHQASNIPLNRFAQPEEMTGQAILLLSDHATYMTGGEYFIDGGQL 258 (260)
T ss_dssp H---HHHHHHHHTCTTSSCBCGGGGHHHHHHHHSGGGTTCCSCEEEECTTGG
T ss_pred H---HHHHHHHhcCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEECCCee
Confidence 1 122234456677889999999999999999999899999999999753
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6e-44 Score=321.10 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=204.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|++|+++|+ +|++++|++++++++.+++. .+..+.+|+++.+++++++ +++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~----~~~~~~~Dv~d~~~v~~~~----~~~ 74 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECP----GIEPVCVDLGDWEATERAL----GSV 74 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHST----TCEEEECCTTCHHHHHHHH----TTC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHH----HHh
Confidence 58999999999999999999999999996 99999999988888887764 5788999999999877665 457
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
++||+||||||.... .++.+.+.++|++.+++|+.+++.++++++|.|.++.. .|+||++||..+..
T Consensus 75 g~iDilVnnAg~~~~-~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~-~g~Ii~isS~~~~~----------- 141 (244)
T d1pr9a_ 75 GPVDLLVNNAAVALL-QPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGV-PGAIVNVSSQCSQR----------- 141 (244)
T ss_dssp CCCCEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-CEEEEEECCGGGTS-----------
T ss_pred CCceEEEeccccccc-cchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCC-cceEeecccccccc-----------
Confidence 899999999999755 46778999999999999999999999999997654321 48999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.++...|+.||+|+..|++++|.|+ ++.||+||+|+||+|+|++...... ...
T Consensus 142 ------------------------~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~~~~-~~~ 195 (244)
T d1pr9a_ 142 ------------------------AVTNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWS-DPH 195 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHTTSC-SHH
T ss_pred ------------------------cccchhhhhhhHHHHHHHHHHHHHHh-CCCcEEEEEEeeCcCcChHHhhhcc-ChH
Confidence 56778899999999999999999999 8889999999999999986543221 112
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........|.+++.+|+|+|+.++||+++.+.++||+.|..||+-
T Consensus 196 ~~~~~~~~~pl~R~~~peevA~~v~fL~S~~a~~itG~~i~vDGG~ 241 (244)
T d1pr9a_ 196 KAKTMLNRIPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF 241 (244)
T ss_dssp HHHHHHTTCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCcCCcEEEECccH
Confidence 2223344567788999999999999999999999999999999863
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=4e-44 Score=327.76 Aligned_cols=248 Identities=17% Similarity=0.150 Sum_probs=209.4
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|++++++.+.+++... ..++.++.+|+++.++++++++++.
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 79 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTL 79 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999996 9999999999999888887654 3478999999999999999999999
Q ss_pred hcCCCccEEEEcccccCCC-CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPT-AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+++|+||++|||||..... ....+.+.+.|++.+++|+.+++.++++++|+|+++. +++|+++||..+..
T Consensus 80 ~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~--~g~ii~~ss~~~~~------- 150 (274)
T d1xhla_ 80 AKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSSIVAGPQ------- 150 (274)
T ss_dssp HHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECCGGGSSS-------
T ss_pred HHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccc--cccccchhhhhccc-------
Confidence 9999999999999976432 2344568899999999999999999999999999875 47888888877663
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|+.+|+|++|.|+ ++.||+||+|+||+|+|++......
T Consensus 151 ----------------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~ 201 (274)
T d1xhla_ 151 ----------------------------AHSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAMGL 201 (274)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHHTTC
T ss_pred ----------------------------cCCCCceehhhhhHHHHHHHHHHHHH-hHhCCceeeeccCCCcCchhhhhcc
Confidence 56778899999999999999999999 8889999999999999986543221
Q ss_pred h--hhhh----hcchhHHhhhcCccchhHHhhhhhhhhcC-CCCCCCceeeecCCCCc
Q 018331 278 P--LFRL----LFPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~--~~~~----~~~~~~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~G~~~~~d~~~~ 328 (358)
. .... ........|.+++.+|+|+|+.++||+++ .+.++||+.+..||+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~iPlgR~g~pediA~~v~fL~S~d~s~~itG~~i~vDGG~~ 259 (274)
T d1xhla_ 202 PETASDKLYSFIGSRKECIPVGHCGKPEEIANIIVFLADRNLSSYIIGQSIVADGGST 259 (274)
T ss_dssp CHHHHHHHHHHHHHCTTTCTTSSCBCHHHHHHHHHHHHCHHHHTTCCSCEEEESTTGG
T ss_pred cchhhHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHHcCCccccCccCcEEEeCcCHH
Confidence 1 1111 11122345778899999999999999985 57789999999999864
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.3e-43 Score=321.83 Aligned_cols=246 Identities=17% Similarity=0.168 Sum_probs=211.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE-ecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA-CRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~-~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++|+||++|||||++|||+++|+.|+++|+ +|+++ +|+++.++.+.+++...+.+++.+.+|+++.++++++++++.+
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 80 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVS 80 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHH
Confidence 579999999999999999999999999996 77765 5677778888888888888999999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++++||+||||||.... .++.+.+.+.|++.+++|+.+++.++++++|+|+++ +++++++|..+..
T Consensus 81 ~~g~idilinnag~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~~iii~s~~~~~--------- 146 (259)
T d1ja9a_ 81 HFGGLDFVMSNSGMEVW-CDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG----GRIILTSSIAAVM--------- 146 (259)
T ss_dssp HHSCEEEEECCCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE----EEEEEECCGGGTC---------
T ss_pred HcCCCcEEEeccccccc-cccccchHHHHHHHHhhccceeeeehhhhhhhhhcC----Ccccccccccccc---------
Confidence 99999999999998754 467788999999999999999999999999999875 5888888776543
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
.+.+.+..|+.||+|+.+|+|.||+|+ ++.||+||+|+||+++|+++......
T Consensus 147 -------------------------~~~~~~~~Y~asK~al~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~ 200 (259)
T d1ja9a_ 147 -------------------------TGIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHY 200 (259)
T ss_dssp -------------------------CSCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGT
T ss_pred -------------------------cCCCCchhHHHHHHHHHHHHHHHHHHH-hhcCeEEeccCcCCccChhhhhhhhhh
Confidence 245778899999999999999999999 88899999999999999865432111
Q ss_pred ---------hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 ---------LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ---------~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~pl~R~g~p~eVa~~v~fL~S~~a~~itG~~i~vDGG~ 258 (259)
T d1ja9a_ 201 APGGYKGMPQEKIDEGLANMNPLKRIGYPADIGRAVSALCQEESEWINGQVIKLTGGG 258 (259)
T ss_dssp STTCCTTCCHHHHHHHHHHTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hhhhcccCCHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCCcCceEEeCCCC
Confidence 1111122334567788999999999999999999999999999999964
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.5e-43 Score=317.18 Aligned_cols=249 Identities=18% Similarity=0.242 Sum_probs=211.0
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
++.+|+||++|||||++|||+++|+.|+++|+ +|++++|+.++++++.++++.. +.++.+++||+++++++++++++
T Consensus 4 ~M~~lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~ 82 (257)
T d1xg5a_ 4 GMERWRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSA 82 (257)
T ss_dssp TCGGGTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHH
Confidence 34469999999999999999999999999996 9999999999999998888765 35789999999999999999999
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
+.+++++||+||||||.... .++.+.+.+.|++.+++|+.+++.+++.++|.|+++...+|+||++||..+...
T Consensus 83 ~~~~~g~iD~lVnnAg~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~----- 156 (257)
T d1xg5a_ 83 IRSQHSGVDICINNAGLARP-DTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV----- 156 (257)
T ss_dssp HHHHHCCCSEEEECCCCCCC-CCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC-----
T ss_pred HHHhcCCCCEEEecccccCC-CccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCC-----
Confidence 99999999999999998754 477899999999999999999999999999999876544689999999987631
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhc-ccCCcEEEEecCCcccCCccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFH-EETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~-~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
.|..+...|+.+|+|+.+|+++|+.|+. ++.||+||+|+||+++|++....
T Consensus 157 ----------------------------~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~ 208 (257)
T d1xg5a_ 157 ----------------------------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKL 208 (257)
T ss_dssp ----------------------------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHH
T ss_pred ----------------------------CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhc
Confidence 1456778899999999999999999973 56899999999999999855332
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCcee-eecCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVY-WSWNK 325 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~-~~~d~ 325 (358)
... .........+..++.+|+|+|++++||+++++..++|+. +..+|
T Consensus 209 ~~~---~~~~~~~~~~~~r~~~pedvA~~v~fL~s~~a~~itG~i~i~~~g 256 (257)
T d1xg5a_ 209 HDK---DPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGDIQMRPTG 256 (257)
T ss_dssp TTT---CHHHHHHHHC---CBCHHHHHHHHHHHHHSCTTEEEEEEEEEETT
T ss_pred Chh---hHHHHHhcCCCCCCcCHHHHHHHHHHHhCChhcCeECCEEEEeCC
Confidence 111 122344556777889999999999999999998999985 55554
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=9.8e-43 Score=312.30 Aligned_cols=229 Identities=18% Similarity=0.235 Sum_probs=201.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCc------EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKW------HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~------~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++|||||++|||+++|++|+++|+. .|++++|+.+++++..++++..+.++.++++|+++.++++++++++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE 81 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999963 399999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
++|++|+||||||.... .++.+.+.++|+++|++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 82 ~~g~iDilvnnAg~~~~-~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~--~G~Ii~isS~~~~~--------- 149 (240)
T d2bd0a1 82 RYGHIDCLVNNAGVGRF-GALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQH--SGHIFFITSVAATK--------- 149 (240)
T ss_dssp HTSCCSEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS---------
T ss_pred HcCCcceeecccccccC-CccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcC--CCceEEEechhhcC---------
Confidence 99999999999998755 5778899999999999999999999999999999875 48999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|++||+|+.+|+++|+.|+ ++.||+||+|+||+|+|+++..-...
T Consensus 150 --------------------------~~~~~~~Y~asK~al~~lt~~la~el-~~~gIrvn~i~PG~v~T~~~~~~~~~- 201 (240)
T d2bd0a1 150 --------------------------AFRHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDE- 201 (240)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCCCST-
T ss_pred --------------------------CCCCChHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEeeeCcccCchhhhcCHh-
Confidence 66788999999999999999999999 88899999999999999966432111
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCce-eeecCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGV-YWSWNK 325 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~-~~~~d~ 325 (358)
...++.+|+|+|+.++||+++++...+|+ .+..++
T Consensus 202 -----------~~~~~~~PedvA~~v~~l~s~~~~~~~~~~~i~p~~ 237 (240)
T d2bd0a1 202 -----------MQALMMMPEDIAAPVVQAYLQPSRTVVEEIILRPTS 237 (240)
T ss_dssp -----------TGGGSBCHHHHHHHHHHHHTSCTTEEEEEEEEEETT
T ss_pred -----------hHhcCCCHHHHHHHHHHHHcCCccCccCCEEEEecC
Confidence 11346799999999999999887766555 444554
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1.1e-42 Score=312.24 Aligned_cols=237 Identities=19% Similarity=0.175 Sum_probs=203.1
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++ +.++.++++|++++++++++++++.+++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~~Dls~~~~i~~~~~~i~~~~ 77 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAAL---EAEAIAVVADVSDPKAVEAVFAEALEEF 77 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC---CSSEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999995 9999999998877766655 4688999999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|++|||||.... .++.+.+.++|++++++|+.+++.++++++|+|.++ +.|+++||.+..
T Consensus 78 g~iDiLinnAg~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~----~~i~~~ss~a~~------------ 140 (241)
T d2a4ka1 78 GRLHGVAHFAGVAHS-ALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG----GSLVLTGSVAGL------------ 140 (241)
T ss_dssp SCCCEEEEGGGGTTT-TC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT----CEEEEECCCTTC------------
T ss_pred CCccEeccccccccc-cchhhhhccccccccccccccccccccccccccccc----cceeeccccccc------------
Confidence 999999999998754 578899999999999999999999999999998764 466666665543
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+.+|+|+++|++.||+|+ .+.||+||+|+||+++|++... ..+ .
T Consensus 141 ------------------------~~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~-~~~--~ 192 (241)
T d2a4ka1 141 ------------------------GAFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAG-LPP--W 192 (241)
T ss_dssp ------------------------CHHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTT-SCH--H
T ss_pred ------------------------cccCccccchhhHHHHHHHHHHHHHH-hHhCCEEeeeccCcCCCHHHHh-hhH--h
Confidence 44788899999999999999999999 8889999999999999986532 221 2
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.........+.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 193 ~~~~~~~~~p~~r~~~p~dva~~v~fL~S~~s~~itG~~i~vDGG~ 238 (241)
T d2a4ka1 193 AWEQEVGASPLGRAGRPEEVAQAALFLLSEESAYITGQALYVDGGR 238 (241)
T ss_dssp HHHHHHHTSTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTT
T ss_pred HHHHHHhCCCCCCCcCHHHHHHHHHHHhcchhCCCcCceEEeCCCc
Confidence 2233445667788999999999999999999999999999999975
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.1e-42 Score=317.95 Aligned_cols=248 Identities=17% Similarity=0.190 Sum_probs=211.4
Q ss_pred CcccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC-hHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHH
Q 018331 39 GKKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD-FLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 39 ~~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~-~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+.+|+||++|||||++|||+++|++|+++|+ +|++++|+ ++.++.+.+++...+.++.++++|+++.++++++++++
T Consensus 12 ~~~sL~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 12 QSASLEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp GGGCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 44679999999999999999999999999996 88888766 56677888888877889999999999999999999999
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
.+.++++|++|||+|.... .++.+.+.+.|++.+++|+.+++.++++++|+|+++ +++++++|..+..
T Consensus 91 ~~~~g~idilV~nag~~~~-~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~----g~~i~i~s~~~~~------- 158 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSF-GHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG----GRLILMGSITGQA------- 158 (272)
T ss_dssp HHHHSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT----CEEEEECCGGGTC-------
T ss_pred HHHhCCCCccccccccchh-hhhhhhhhhHHHHHhhhccceeeeeccccccccccc----ccccccccccccc-------
Confidence 9999999999999998754 467789999999999999999999999999999875 6999998877543
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
.+.++...|+.+|+|+.+|+|++|+|+ ++.||+||+|+||+|+|++......
T Consensus 159 ---------------------------~~~~~~~~Y~asKaal~~ltk~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~ 210 (272)
T d1g0oa_ 159 ---------------------------KAVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCR 210 (272)
T ss_dssp ---------------------------SSCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGG
T ss_pred ---------------------------ccccchhhHHHHHHHHHHHHHHHHHHh-chhCeEEEEEccCCcCChHHHHHHH
Confidence 245677889999999999999999999 7889999999999999986533211
Q ss_pred hhh----------hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLF----------RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~----------~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
... ..........|.+++.+|+|+|.+++||+++.+.++||+.+..||+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~s~~s~~itG~~i~vDGG~ 270 (272)
T d1g0oa_ 211 EYIPNGENLSNEEVDEYAAVQWSPLRRVGLPIDIARVVCFLASNDGGWVTGKVIGIDGGA 270 (272)
T ss_dssp GGSTTCTTCCHHHHHHHHHHHSCTTCSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred hhhhcccccchHHHHHHHHHccCCCCCCcCHHHHHHHHHHHhCchhcCccCceEeECCCC
Confidence 100 00111233456688999999999999999999989999999999963
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=8e-43 Score=319.40 Aligned_cols=244 Identities=16% Similarity=0.117 Sum_probs=204.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
|+|+||++|||||++|||+++|+.|+++|+ +|++++|+++++++..+++. .++..+.+|+++.++++++++++.++
T Consensus 1 M~L~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~---~~~~~~~~Dv~~~~~~~~~~~~~~~~ 76 (276)
T d1bdba_ 1 MKLKGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG---DNVLGIVGDVRSLEDQKQAASRCVAR 76 (276)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC---CCeeEEecccccHHHHHHHHHHHHHH
Confidence 469999999999999999999999999996 99999999988887776653 67899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCC----CCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAK----EPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
++++|++|||||+...... ..+.+.+.|+++|++|+.+++.++++++|+|++++ |+||+++|..+..
T Consensus 77 ~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~---g~iI~i~S~~~~~------ 147 (276)
T d1bdba_ 77 FGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR---GNVIFTISNAGFY------ 147 (276)
T ss_dssp HSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEECCGGGTS------
T ss_pred hCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC---CCceeeeechhcc------
Confidence 9999999999998654322 23445567999999999999999999999998764 7999999988774
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
+.++...|+.||+|+.+|+|+||.|+ ++ +|+||+|+||+|+|++.....
T Consensus 148 -----------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~-~IrVN~I~PG~i~T~~~~~~~ 196 (276)
T d1bdba_ 148 -----------------------------PNGGGPLYTAAKHAIVGLVRELAFEL-AP-YVRVNGVGSGGINSDLRGPSS 196 (276)
T ss_dssp -----------------------------TTSSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECCCCSCCCCCGG
T ss_pred -----------------------------CCCCCchHHHHHHHHHHHHHHHHHHh-hc-ceEEcccCCCCEecCcCCccc
Confidence 55778899999999999999999999 65 599999999999998764432
Q ss_pred hhhhhh------h-cchhHHhhhcCccchhHHhhhhhhhhcC-CCCCCCceeeecCCCCc
Q 018331 277 IPLFRL------L-FPPFQKYITKGYVSEDEAGKRLAQVVSD-PSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 277 ~~~~~~------~-~~~~~~~~~~~~~~~~~~a~~i~~l~~~-~~~~~~G~~~~~d~~~~ 328 (358)
...... . .......|.+|+.+|+|+|.+++||+++ .+.++||+.+.+||+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~PlgR~g~peeva~~v~fL~S~~~a~~itG~~i~VDGG~~ 256 (276)
T d1bdba_ 197 LGMGSKAISTVPLADMLKSVLPIGRMPEVEEYTGAYVFFATRGDAAPATGALLNYDGGLG 256 (276)
T ss_dssp GC---------CHHHHHTTTCTTSSCCCGGGGSHHHHHHHCHHHHTTCSSCEEEESSSGG
T ss_pred hhhhhhccCcHHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCCcccCCeeCcEEEECcChh
Confidence 211111 1 1122345678889999999999999985 57789999999999853
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-42 Score=314.48 Aligned_cols=237 Identities=17% Similarity=0.171 Sum_probs=202.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+||++|||||++|||+++|++|+++|+ +|++++|+.+++++..+++... +.++.++++|+++.++++++++++.++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 79 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDH 79 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999999996 9999999999998888887653 557899999999999999999999999
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+|+||+||||||... .+.|++.+++|+.+++.++++++|+|.++.. .+|+||++||..+..
T Consensus 80 ~G~iDilVnnAg~~~---------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~--------- 141 (254)
T d2gdza1 80 FGRLDILVNNAGVNN---------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM--------- 141 (254)
T ss_dssp HSCCCEEEECCCCCC---------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS---------
T ss_pred cCCcCeecccccccc---------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhcc---------
Confidence 999999999999863 2458999999999999999999999987643 248999999999874
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHH--HHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE--FHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~--la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|++||+|+.+|+|+ |+.|+ ++.||+||+|+||+|+|+++..-..
T Consensus 142 --------------------------~~~~~~~Y~asKaal~~ltrs~ala~e~-~~~gIrVN~I~PG~i~T~~~~~~~~ 194 (254)
T d2gdza1 142 --------------------------PVAQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 194 (254)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGC
T ss_pred --------------------------CCCCccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEEcCCCCChhhhhccc
Confidence 667888999999999999997 68898 8889999999999999986533211
Q ss_pred h-----hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 P-----LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~-----~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. ............+.+++.+|+|+|++++||++++ .+||+.+.+||+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~p~~r~~~pedvA~~v~fL~s~~--~itG~~i~VdGG~ 247 (254)
T d2gdza1 195 EENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDD--ALNGAIMKITTSK 247 (254)
T ss_dssp HHHHGGGGGGHHHHHHHHHHHCCBCHHHHHHHHHHHHHCT--TCSSCEEEEETTT
T ss_pred cccccccHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHcCC--CCCCCEEEECCCC
Confidence 1 1111122334556778999999999999999976 3899999999975
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=3.6e-43 Score=317.61 Aligned_cols=237 Identities=15% Similarity=0.133 Sum_probs=203.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
|+|||||++|||+++|+.|+++|+ +|++++|+.+.++++..... .+.++|+++.++++++++++.+++|+||+
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~------~~~~~dv~~~~~~~~~~~~~~~~~G~iDi 74 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAE------TYPQLKPMSEQEPAELIEAVTSAYGQVDV 74 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHH------HCTTSEECCCCSHHHHHHHHHHHHSCCCE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhC------cEEEeccCCHHHHHHHHHHHHHHcCCCCE
Confidence 899999999999999999999996 99999999877766544322 24468999999999999999999999999
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
||||||+.....++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||++||..+..
T Consensus 75 LVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~--~G~IV~isS~~~~~---------------- 136 (252)
T d1zmta1 75 LVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK--SGHIIFITSATPFG---------------- 136 (252)
T ss_dssp EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CCEEEEECCSTTTS----------------
T ss_pred EEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc--cceeeccccccccc----------------
Confidence 999999875555778899999999999999999999999999999876 48999999998874
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-----hh
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-----FR 281 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-----~~ 281 (358)
+.++...|+.||+|+.+|+|+||+|+ ++.||+||+|+||+|+|++........ ..
T Consensus 137 -------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e 196 (252)
T d1zmta1 137 -------------------PWKELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPE 196 (252)
T ss_dssp -------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHH
T ss_pred -------------------ccccccccccccccHHHHHHHHHHHh-cccCcEEEEEecCCCcCcchhhhhhcccccCCHH
Confidence 56778899999999999999999999 888999999999999998754422111 11
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
.........+.+|+.+|+|+|.+++||+++.+.++||+.+..||+..
T Consensus 197 ~~~~~~~~~pl~R~g~pedvA~~v~fL~S~~s~~iTG~~i~vdGG~~ 243 (252)
T d1zmta1 197 HVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFP 243 (252)
T ss_dssp HHHHHHHHSSSSSCBCHHHHHHHHHHHHTTSCGGGTTCEEEESTTCC
T ss_pred HHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECCCce
Confidence 12233445677889999999999999999999999999999999854
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.4e-42 Score=314.52 Aligned_cols=244 Identities=12% Similarity=0.098 Sum_probs=201.3
Q ss_pred ccCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.||+||++|||||+| |||+++|++|+++|+ +|++++|+++..+...+. .....+...+++|+++.++++++++++.
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKL-AEALGGALLFRADVTQDEELDALFAGVK 81 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH-HHHTTCCEEEECCTTCHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHh-hhccCcccccccccCCHHHHHHHHHHHH
Confidence 379999999999987 999999999999996 899999987555544333 3334567889999999999999999999
Q ss_pred hcCCCccEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 119 RSGRPLDVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
+.+++||+||||||.... ...+.+.+.++|+..+++|+.+++.++++++|+|++. |+||++||..+..
T Consensus 82 ~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~----G~Iv~isS~~~~~----- 152 (256)
T d1ulua_ 82 EAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREG----GGIVTLTYYASEK----- 152 (256)
T ss_dssp HHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE----EEEEEEECGGGTS-----
T ss_pred HhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccC----CEEEEEeehHhcC-----
Confidence 999999999999998632 2244577889999999999999999999999998764 7999999998874
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.++...|+.||+|+.+|+|++|+|+ ++.||+||+|+||+++|++....
T Consensus 153 ------------------------------~~~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~I~PG~i~t~~~~~~ 201 (256)
T d1ulua_ 153 ------------------------------VVPKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARSI 201 (256)
T ss_dssp ------------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------
T ss_pred ------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCCEEeeeccceeeeccccch
Confidence 55778899999999999999999999 88899999999999999855432
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
. .............|.+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 202 ~-~~~~~~~~~~~~~pl~R~~~pedvA~~v~fL~S~~s~~itG~~i~VDGG~ 252 (256)
T d1ulua_ 202 P-GFTKMYDRVAQTAPLRRNITQEEVGNLGLFLLSPLASGITGEVVYVDAGY 252 (256)
T ss_dssp ---CHHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred h-hhHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECcCE
Confidence 2 11223334455667788999999999999999999989999999999974
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=7.3e-42 Score=305.63 Aligned_cols=230 Identities=17% Similarity=0.168 Sum_probs=194.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
|+||++|||||++|||+++|+.|+++|+ +|++++|+++.+++. ...++.+|+++. ++.+.++++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l~~~---------~~~~~~~Dv~~~------~~~~~~~~g 65 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELLKRS---------GHRYVVCDLRKD------LDLLFEKVK 65 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHT---------CSEEEECCTTTC------HHHHHHHSC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHhc---------CCcEEEcchHHH------HHHHHHHhC
Confidence 7899999999999999999999999996 999999997655432 345788999863 445566788
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
++|+||||||.... .++.+.+.++|++.+++|+.+++.++++++|+|++++ .|+||+++|..+..
T Consensus 66 ~iD~lVnnAG~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~--~G~ii~i~S~~~~~------------ 130 (234)
T d1o5ia_ 66 EVDILVLNAGGPKA-GFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG--WGRIVAITSFSVIS------------ 130 (234)
T ss_dssp CCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCGGGTS------------
T ss_pred CCcEEEecccccCC-cchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc--cccccccccccccc------------
Confidence 99999999998644 4677899999999999999999999999999999876 48999999988763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.+....|+.||+|+.+|+|++|+|+ ++.||+||+|+||+++|++........ .
T Consensus 131 -----------------------~~~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~~--~ 184 (234)
T d1o5ia_ 131 -----------------------PIENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSEE--K 184 (234)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCHH--H
T ss_pred -----------------------cccccccchhHHHHHHHHHHHHHHHh-cccCeEEeecccCccchhhhhhhcCHH--H
Confidence 56778899999999999999999999 888999999999999998664422221 1
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
........|.+++.+|+|+|.+++||+++.+.++||+.+..||+...
T Consensus 185 ~~~~~~~~pl~R~~~pediA~~v~fL~S~~s~~itG~~i~vDGG~s~ 231 (234)
T d1o5ia_ 185 KKQVESQIPMRRMAKPEEIASVVAFLCSEKASYLTGQTIVVDGGLSK 231 (234)
T ss_dssp HHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTCCC
T ss_pred HHHHHhcCCCCCCcCHHHHHHHHHHHhChhhcCCcCcEEEECccccc
Confidence 12233456778899999999999999999998999999999998643
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.3e-41 Score=314.67 Aligned_cols=257 Identities=16% Similarity=0.155 Sum_probs=209.8
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC---------hHHHHHHHHHhcCCCCceEEEEecCCCHHHH
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD---------FLKAERAAKSAGMAKENYTIMHLDLASLDSV 110 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~---------~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i 110 (358)
+++|+||++|||||++|||+++|++|+++|+ +|++.+|+ ...++...+++.. +.....+|+++.+++
T Consensus 2 Pm~l~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~~ 77 (302)
T d1gz6a_ 2 PLRFDGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRR---RGGKAVANYDSVEAG 77 (302)
T ss_dssp CCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHH---TTCEEEEECCCGGGH
T ss_pred CcCcCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhh---cccccccccchHHHH
Confidence 4689999999999999999999999999996 89888654 4456666666543 445677999999999
Q ss_pred HHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 018331 111 RQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190 (358)
Q Consensus 111 ~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~ 190 (358)
+++++++.+++|+||+||||||+... .++.+.+.++|++.+++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 78 ~~~v~~~~~~~G~iDiLVnNAGi~~~-~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~--~G~IV~isS~~~~~ 154 (302)
T d1gz6a_ 78 EKLVKTALDTFGRIDVVVNNAGILRD-RSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN--YGRIIMTASASGIY 154 (302)
T ss_dssp HHHHHHHHHHTSCCCEEEECCCCCCC-CCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEECCHHHHH
T ss_pred HHHHHHHHHHcCCCCEEEECCccCCC-CChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC--CcEEEEeCChhhcC
Confidence 99999999999999999999999765 5788999999999999999999999999999999876 48999999999874
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+.++...|++||+|+.+|+++|+.|+ ++.||+||+|+||++.|.
T Consensus 155 -----------------------------------~~~~~~~Y~asKaal~~lt~~la~E~-~~~gIrVN~I~PG~~~t~ 198 (302)
T d1gz6a_ 155 -----------------------------------GNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAGSRM 198 (302)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECCSTT
T ss_pred -----------------------------------CCCCcHHHHHHHHHHHHHHHHHHHHH-hccCCceeeeCCCCCCcc
Confidence 56788999999999999999999999 888999999999999774
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCccccc---------ccchhccCH
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFEN---------QLSQEASDV 341 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~---------~~~~~~~~~ 341 (358)
+..... .. ..+..+|+|+|..++||+++.+ ++||+.|..||+...-.. .......+.
T Consensus 199 -~~~~~~-------~~-----~~~~~~PedvA~~v~fL~S~~a-~itG~~i~vdGG~~~~~~~~~~~g~~~~~~~~~~t~ 264 (302)
T d1gz6a_ 199 -TETVMP-------ED-----LVEALKPEYVAPLVLWLCHESC-EENGGLFEVGAGWIGKLRWERTLGAIVRKRNQPMTP 264 (302)
T ss_dssp -TGGGSC-------HH-----HHHHSCGGGTHHHHHHHTSTTC-CCCSCEEEEETTEEEEEEEEECCCEECCBTTBCCCH
T ss_pred -hhhcCc-------Hh-----hHhcCCHHHHHHHHHHHcCCCc-CCCCcEEEeCCCceeEEEEeecCcccccCCCCCCCH
Confidence 322111 11 1234689999999999998765 689999999987533110 111223466
Q ss_pred HHHHHHHHHHHH
Q 018331 342 EKARKVWEISEK 353 (358)
Q Consensus 342 ~~~~~~w~~~~~ 353 (358)
|...+.|+...+
T Consensus 265 e~i~~~~~~i~d 276 (302)
T d1gz6a_ 265 EAVRDNWVKICD 276 (302)
T ss_dssp HHHHHTHHHHTC
T ss_pred HHHHHHHHHHhC
Confidence 777778876544
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-41 Score=302.21 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=195.7
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.++|+||++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++...+.++..+.||+++.++++++++++.+
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~ 80 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKA 80 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH
Confidence 3679999999999999999999999999995 999999999999999999988888999999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++++|++|||||..... .+.+.+.+.|++++++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 81 ~~g~idilinnag~~~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~--~G~Iv~isS~~~~~--------- 148 (244)
T d1yb1a_ 81 EIGDVSILVNNAGVVYTS-DLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN--HGHIVTVASAAGHV--------- 148 (244)
T ss_dssp HTCCCSEEEECCCCCCCC-CCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEEECCCC-CC---------
T ss_pred HcCCCceeEeeccccccc-cccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC--CceEEEeecchhcC---------
Confidence 999999999999998654 566788899999999999999999999999999886 48999999999884
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc--cCCcEEEEecCCcccCCcccccch
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE--ETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~--~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+++..|++||+|+.+|+++|+.|+.. .+||+|++|+||+|+|++.....
T Consensus 149 --------------------------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~~- 201 (244)
T d1yb1a_ 149 --------------------------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNPS- 201 (244)
T ss_dssp --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCTH-
T ss_pred --------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCcC-
Confidence 6789999999999999999999999832 26899999999999998654321
Q ss_pred hhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 278 PLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.......+|+++|+.++..+...
T Consensus 202 ------------~~~~~~~~pe~va~~i~~~~~~~ 224 (244)
T d1yb1a_ 202 ------------TSLGPTLEPEEVVNRLMHGILTE 224 (244)
T ss_dssp ------------HHHCCCCCHHHHHHHHHHHHHTT
T ss_pred ------------ccccCCCCHHHHHHHHHHHHhcC
Confidence 11235678999999999877554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=4.6e-41 Score=310.45 Aligned_cols=248 Identities=15% Similarity=0.171 Sum_probs=209.9
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+|+||++|||||++|||+++|++|+++|+ +|++++|+..++++..+++.. .+.++.++++|+++.++++++++.+.+
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~ 99 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 99 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhh
Confidence 479999999999999999999999999995 999999999888887777643 467889999999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|+||||||.... ..+.+.+.+.|+..+.+|+.+.+.+.+...+.+..... .+.+++++|..+..
T Consensus 100 ~~g~iDilvnnAg~~~~-~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~i~~~ss~~~~~--------- 168 (294)
T d1w6ua_ 100 VAGHPNIVINNAAGNFI-SPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQK-GAAFLSITTIYAET--------- 168 (294)
T ss_dssp HTCSCSEEEECCCCCCC-SCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CEEEEEECCTHHHH---------
T ss_pred hccccchhhhhhhhccc-cccccchhhhhhhheeeecccchhhhhhhhcccccccc-cccccccccchhhh---------
Confidence 99999999999998755 45667889999999999999999999888887765543 47788888877663
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|+.||+|+.+|+|.+|+|+ ++.||+||+|+||+|+|++......+.
T Consensus 169 --------------------------~~~~~~~YsasKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~ 221 (294)
T d1w6ua_ 169 --------------------------GSGFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPT 221 (294)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTT
T ss_pred --------------------------cccccchHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEccCccccchhhhccCCc
Confidence 45678889999999999999999999 888999999999999999765543333
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...........|.+++.+|+|+|++++||+++.+.++||+.+.+||+.
T Consensus 222 ~~~~~~~~~~~pl~R~~~pediA~~v~fL~sd~s~~itG~~i~vDGG~ 269 (294)
T d1w6ua_ 222 GTFEKEMIGRIPCGRLGTVEELANLAAFLCSDYASWINGAVIKFDGGE 269 (294)
T ss_dssp SHHHHHHHTTCTTSSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred HHHHHHHhhcCCCCCCCCHHHHHHHHHHHhCchhcCCCCcEEEECCCh
Confidence 333344555667788999999999999999999889999999999985
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1e-40 Score=302.64 Aligned_cols=243 Identities=18% Similarity=0.149 Sum_probs=201.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHh---CCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAE---TGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~---~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
.|+||++|||||++|||+++|++|++ +|+ +|++++|+.++++.+.+++... +.++..++||+++.++++++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~ 81 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSA 81 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999999996 685 9999999999999998888553 55789999999999999999998
Q ss_pred HHhc----CCCccEEEEcccccCC--CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCC
Q 018331 117 FRRS----GRPLDVLVCNAAVYLP--TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNT 190 (358)
Q Consensus 117 ~~~~----~~~iD~lv~~ag~~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~ 190 (358)
+.+. ++.+|++|||||.... ...+.+.+.+.|++++++|+.+++.++++++|+|++++...|+||++||..+..
T Consensus 82 ~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~ 161 (259)
T d1oaaa_ 82 VRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccC
Confidence 8763 4578999999998643 345668899999999999999999999999999998753358999999999874
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
+.+++..|++||+|+.+|+++|+.| .+||+||+|+||+|+|+
T Consensus 162 -----------------------------------~~~~~~~Y~asKaal~~lt~~la~e---~~gIrVn~v~PG~i~T~ 203 (259)
T d1oaaa_ 162 -----------------------------------PYKGWGLYCAGKAARDMLYQVLAAE---EPSVRVLSYAPGPLDND 203 (259)
T ss_dssp -----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHH---CTTEEEEEEECCSBSSH
T ss_pred -----------------------------------CCccchHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEcCCCCCH
Confidence 6678899999999999999999998 36999999999999998
Q ss_pred cccccchhh--hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 271 GLFREHIPL--FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 271 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
+........ ...........+..++.+|+|+|+.+++|+++. .++||++|++.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~evA~~i~~ll~~~-s~~TG~~idv~ 258 (259)
T d1oaaa_ 204 MQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKD-TFQSGAHVDFY 258 (259)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHTTCSBCHHHHHHHHHHHHHHC-CSCTTEEEETT
T ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhc-cCCCCCeEEec
Confidence 653321110 011111223345567889999999999999864 57999999864
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.2e-40 Score=297.92 Aligned_cols=238 Identities=19% Similarity=0.200 Sum_probs=198.5
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.|+||++|||||++|||+++|+.|+++|+ +|++++|+++++++..+. ..+....+|+.+.+.++. ..+.+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~-----~~~~~~~~d~~~~~~~~~----~~~~~ 72 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKY-----PGIQTRVLDVTKKKQIDQ----FANEV 72 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGS-----TTEEEEECCTTCHHHHHH----HHHHC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc-----cCCceeeeeccccccccc----ccccc
Confidence 48999999999999999999999999995 999999998776554332 357788889988765554 44456
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||+|.... .++.+.+.++|++.+++|+.+++.++++++|+|.+++ .|+||++||..+..
T Consensus 73 ~~id~lVn~ag~~~~-~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~--~g~Ii~isS~~~~~----------- 138 (245)
T d2ag5a1 73 ERLDVLFNVAGFVHH-GTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK--SGNIINMSSVASSV----------- 138 (245)
T ss_dssp SCCSEEEECCCCCCC-BCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEECCSBTTT-----------
T ss_pred ccceeEEecccccCC-CChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCC--Cceeeeeechhhcc-----------
Confidence 799999999998765 4677899999999999999999999999999998876 48999999987642
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh---
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--- 278 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--- 278 (358)
.+.+....|+.+|+|+++|+|+||+|+ ++.||+||+|+||+|+|++.......
T Consensus 139 -----------------------~~~~~~~~Y~~sKaal~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~ 194 (245)
T d2ag5a1 139 -----------------------KGVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGN 194 (245)
T ss_dssp -----------------------BCCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSSS
T ss_pred -----------------------CCccchhHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeceeechhhHhhhhhhhh
Confidence 255778899999999999999999999 88899999999999999866442211
Q ss_pred hhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 279 LFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
............+.+++.+|+|+|+.+.||+++.+.++||+.|.+||+.
T Consensus 195 ~~~~~~~~~~~~pl~R~~~pedva~~v~fL~s~~s~~iTG~~i~VDGG~ 243 (245)
T d2ag5a1 195 PEEARNDFLKRQKTGRFATAEEIAMLCVYLASDESAYVTGNPVIIDGGW 243 (245)
T ss_dssp HHHHHHHHHHTCTTSSCEEHHHHHHHHHHHHSGGGTTCCSCEEEECTTG
T ss_pred hHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCceEEeCCCc
Confidence 1111223344567788999999999999999999999999999999974
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=4.1e-40 Score=297.60 Aligned_cols=237 Identities=17% Similarity=0.245 Sum_probs=191.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh-cCCCCceEEEEecCC-CHHHHHHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA-GMAKENYTIMHLDLA-SLDSVRQFVDTFR 118 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~-~~~~~~i~~~~~Dl~-~~~~i~~~~~~~~ 118 (358)
+||+||++|||||++|||+++|++|+++|+ +|++++|+.+..+...+.. ...+.++.++.+|++ +.++++++++++.
T Consensus 1 m~l~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (254)
T d1sbya1 1 MDLTNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIF 79 (254)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHH
Confidence 479999999999999999999999999997 7666666654444433322 223557899999998 6789999999999
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC-CCCeEEEEecCCCCCCCcCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY-PSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~-~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+++++||+||||||.. +.+.|++++++|+.|++.++++++|+|.++.. .+|+||++||..+..
T Consensus 80 ~~~g~iDilvnnAG~~---------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~------- 143 (254)
T d1sbya1 80 DQLKTVDILINGAGIL---------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN------- 143 (254)
T ss_dssp HHHSCCCEEEECCCCC---------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS-------
T ss_pred HHcCCCCEEEeCCCCC---------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc-------
Confidence 9999999999999964 45779999999999999999999999977532 358999999999874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.+++..|++||+|+.+|+++|+.|+ .+.||+||+|+||+|+|++... ..
T Consensus 144 ----------------------------~~~~~~~Y~asKaal~~~t~~la~el-~~~gIrVn~I~PG~v~T~~~~~-~~ 193 (254)
T d1sbya1 144 ----------------------------AIHQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHT-FN 193 (254)
T ss_dssp ----------------------------CCTTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHS-CC
T ss_pred ----------------------------CCCCCHHHHHHHHHHHHHHHHHHhhc-cccCeEEEEEEeCCCcCccccc-cc
Confidence 66788999999999999999999999 8889999999999999985432 22
Q ss_pred hhhhhhcchhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCc
Q 018331 278 PLFRLLFPPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSA 328 (358)
Q Consensus 278 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~ 328 (358)
... .....+. .....+..+|+++|+.++++++. ..||+.|..||+..
T Consensus 194 ~~~-~~~~~~~~~~~~~~~~~~e~va~~~~~~~~~---~~tG~vi~vdgG~l 241 (254)
T d1sbya1 194 SWL-DVEPRVAELLLSHPTQTSEQCGQNFVKAIEA---NKNGAIWKLDLGTL 241 (254)
T ss_dssp CGG-GSCTTHHHHHTTSCCEEHHHHHHHHHHHHHH---CCTTCEEEEETTEE
T ss_pred cch-hHHHHHHhccccCCCCCHHHHHHHHHHhhhC---CCCCCEEEECCCEe
Confidence 111 1222222 22334467999999999988864 35999999999753
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=2e-39 Score=292.27 Aligned_cols=232 Identities=22% Similarity=0.294 Sum_probs=188.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHH---hCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh--
Q 018331 45 KGSVIITGASSGLGLATAKALA---ETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-- 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La---~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~-- 119 (358)
-|+||||||++|||+++|+.|+ ++| .+|++++|+.++++.+.+ +...+.++.++++|+++.++++++++++.+
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g-~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 79 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPP-QHLFTTCRNREQAKELED-LAKNHSNIHILEIDLRNFDAYDKLVADIEGVT 79 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCC-SEEEEEESCTTSCHHHHH-HHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHH-HHhcCCcEEEEEEEeccHHHHHHHHhhhHHHh
Confidence 4799999999999999999997 468 599999999887776654 333457899999999999999999998854
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC---------CCCCeEEEEecCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD---------YPSKRLIIVGSITGNT 190 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~---------~~~g~iv~vsS~~~~~ 190 (358)
.++++|+||||||+......+.+.+.++|++++++|+.|++.++++++|+|+++. ...+++|+++|..+..
T Consensus 80 ~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~ 159 (248)
T d1snya_ 80 KDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSI 159 (248)
T ss_dssp GGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCS
T ss_pred hcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 6789999999999976655677889999999999999999999999999998641 1248999999988764
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
.. .+.+++..|+.||+|+.+|++.++.|+ .+.||+||+|+||+|+|+
T Consensus 160 ~~--------------------------------~~~~~~~~Y~aSKaal~~lt~~la~e~-~~~gI~vn~v~PG~v~T~ 206 (248)
T d1snya_ 160 QG--------------------------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTD 206 (248)
T ss_dssp TT--------------------------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCSBCST
T ss_pred CC--------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCCcccCC
Confidence 11 245678899999999999999999999 888999999999999998
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcc
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSAS 329 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~ 329 (358)
+..... ..++++.+..++.++.......+|+||++||...+
T Consensus 207 m~~~~~------------------~~~~~~~~~~i~~~i~~l~~~~tG~~i~~dG~~ip 247 (248)
T d1snya_ 207 MGGSSA------------------PLDVPTSTGQIVQTISKLGEKQNGGFVNYDGTPLA 247 (248)
T ss_dssp TTCTTC------------------SBCHHHHHHHHHHHHHHCCGGGTTCEECTTSCBCC
T ss_pred cccccC------------------CCCchHHHHHHHHHHHhcCccCCCcEEEECCeEcC
Confidence 654321 12344455555555554444579999999997654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.2e-39 Score=292.37 Aligned_cols=234 Identities=21% Similarity=0.271 Sum_probs=186.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
|+.|+||||||++|||+++|++|+++|+ .+|++++|+.++++++.+ ..+.+++++++|+++.++++++++++.+.+
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~---~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 77 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS---IKDSRVHVLPLTVTCDKSLDTFVSKVGEIV 77 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT---CCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHH---hhCCceEEEEEecCCHHHHHHHHHHHHHHh
Confidence 3568999999999999999999999996 479999999877766543 235689999999999999999999998876
Q ss_pred C--CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC---------CCCeEEEEecCCCCC
Q 018331 122 R--PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---------PSKRLIIVGSITGNT 190 (358)
Q Consensus 122 ~--~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~---------~~g~iv~vsS~~~~~ 190 (358)
+ +||+||||||+......+.+.+.++|++++++|+.|++.++++++|+|+++.. ..++++++++..+..
T Consensus 78 ~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~ 157 (250)
T d1yo6a1 78 GSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSI 157 (250)
T ss_dssp GGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCS
T ss_pred CCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccc
Confidence 5 49999999998765556778899999999999999999999999999975421 237899998877654
Q ss_pred CCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 191 NTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
..... ..+..+..+|+.||+|+.+|++.|+.|+ ++.||+||+|+||+|+|+
T Consensus 158 ~~~~~----------------------------~~~~~~~~aY~aSKaal~~l~~~la~el-~~~gI~v~~i~PG~v~T~ 208 (250)
T d1yo6a1 158 TDNTS----------------------------GSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208 (250)
T ss_dssp TTCCS----------------------------TTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC---
T ss_pred cCCcc----------------------------cccchhHHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCCC
Confidence 22111 0133456679999999999999999999 888999999999999998
Q ss_pred cccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 271 GLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+.... ...+|++.+..++.++.......+|+||.+|+.
T Consensus 209 m~~~~------------------~~~~~e~~a~~~~~~~~~~~~~~sG~f~~~~g~ 246 (250)
T d1yo6a1 209 LGGKN------------------AALTVEQSTAELISSFNKLDNSHNGRFFMRNLK 246 (250)
T ss_dssp ----------------------------HHHHHHHHHHHTTCCGGGTTCEEETTEE
T ss_pred CCCCC------------------CCCCHHHHHHHHHHHHhcCCCCCCeEEECCCCe
Confidence 64321 235899999999999988777789999999874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-39 Score=297.94 Aligned_cols=255 Identities=20% Similarity=0.227 Sum_probs=191.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+++|||||++|||+++|++|+++ | .+|++++|+.++++.+.++++..+.++.+++||+++.++++++++++.+++++
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g-~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFS-GDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSS-SEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 357799999999999999999986 7 59999999999999999999888889999999999999999999999999999
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC-----
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP----- 198 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~----- 198 (358)
||+||||||+.... ...+.+.++|+++|++|++|++.++++++|+|+++ |+||++||..+..+.....+.
T Consensus 82 iDiLVnNAGi~~~~-~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~----g~ivnisS~~~~~~~~~~~~y~~~k~ 156 (275)
T d1wmaa1 82 LDVLVNNAGIAFKV-ADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ----GRVVNVSSIMSVRALKSCSPELQQKF 156 (275)
T ss_dssp EEEEEECCCCCCCT-TCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEECCHHHHHHHHTSCHHHHHHH
T ss_pred cEEEEEcCCcCCCC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCcccccccceeccccccchhhhhhh
Confidence 99999999997553 45567788999999999999999999999999764 799999998765322110000
Q ss_pred --CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc---cCCcEEEEecCCcccCCccc
Q 018331 199 --PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE---ETGIAFASLYPGCIATTGLF 273 (358)
Q Consensus 199 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~---~~gI~v~~v~PG~v~t~~~~ 273 (358)
.........+............. ...+..+...|+.||+++.+|++.+++++.. ..||+||+|+||+|+|++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~ 235 (275)
T d1wmaa1 157 RSETITEEELVGLMNKFVEDTKKGV-HQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 235 (275)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHTTC-TTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred cccccchhhhccccccchhcccccc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCccc
Confidence 00000000000000000000000 0112234557999999999999999999832 35999999999999998653
Q ss_pred ccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhc--CCCCCCCceeeecC
Q 018331 274 REHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVS--DPSLTKSGVYWSWN 324 (358)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~--~~~~~~~G~~~~~d 324 (358)
.. ...+|+++|+.+++++. +.....+|+|+..+
T Consensus 236 ~~------------------~~~~pee~A~~~~~~a~~~~~~~~~~G~~~~~~ 270 (275)
T d1wmaa1 236 PK------------------ATKSPEEGAETPVYLALLPPDAEGPHGQFVSEK 270 (275)
T ss_dssp TT------------------CSBCHHHHTHHHHHHHSCCTTCCCCCSCEEETT
T ss_pred Cc------------------ccCCHHHHHHHHHHHHcCChhhcCCCeEEEECC
Confidence 32 23489999999999874 33334799999844
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-38 Score=288.36 Aligned_cols=229 Identities=20% Similarity=0.242 Sum_probs=183.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCc--EEEEEecChH---HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKW--HIIMACRDFL---KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~--~Vi~~~r~~~---~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.|++|||||++|||+++|+.|+++|+. .|..+.|+.+ .+.+..+++...+.++..+++|+++.++++++++++.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 578999999999999999999999973 2444556543 34555566666788999999999999999999987753
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
+++|+||||+|.... ..+.+.+.+.|++++++|+.|++.++++++|+|++++ .|+||++||..+..
T Consensus 82 --g~idilvnnag~~~~-~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~--~G~Iv~isS~~g~~--------- 147 (285)
T d1jtva_ 82 --GRVDVLVCNAGLGLL-GPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG--SGRVLVTGSVGGLM--------- 147 (285)
T ss_dssp --SCCSEEEECCCCCCC-SCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEEEEGGGTS---------
T ss_pred --cchhhhhhccccccc-ccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC--CCceEEEechhhcC---------
Confidence 789999999998755 4677889999999999999999999999999999876 49999999999884
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.++...|++||+|+.+|+++|+.|+ ++.||+||+|+||+|+|+++.......
T Consensus 148 --------------------------~~~~~~~Y~asKaal~~l~~~la~El-~~~gIrVn~V~PG~v~T~~~~~~~~~~ 200 (285)
T d1jtva_ 148 --------------------------GLPFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKVLGSP 200 (285)
T ss_dssp --------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-------CCH
T ss_pred --------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCCChHHHHhccCH
Confidence 66788899999999999999999999 888999999999999998764322110
Q ss_pred h-----------hhh---cchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 280 F-----------RLL---FPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 280 ~-----------~~~---~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
. ... .......+..+..+|+|+|+.++++++.+.+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PeeVA~~v~~~~~~~~p 249 (285)
T d1jtva_ 201 EEVLDRTDIHTFHRFYQYLAHSKQVFREAAQNPEEVAEVFLTALRAPKP 249 (285)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHCBCHHHHHHHHHHHHHCSSC
T ss_pred HHHhhccchhHHHHHHHHHHHHhhhhcccCCCHHHHHHHHHHHHhCCCC
Confidence 0 000 0112233445677999999999999987764
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-37 Score=279.42 Aligned_cols=237 Identities=22% Similarity=0.222 Sum_probs=195.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++|+||++|||||++|||+++|++|+++|+ +|++++|+.++++...+++. .+.....+|+.+.+.++..+..+...
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLG---NNCVFAPADVTSEKDVQTALALAKGK 76 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHC---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC---CCcccccccccccccccccccccccc
Confidence 469999999999999999999999999996 99999999988888877774 57888999999999999999999888
Q ss_pred CCCccEEEEcccccCCC-----CCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC----CCCCeEEEEecCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPT-----AKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTN 191 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~-----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~----~~~g~iv~vsS~~~~~~ 191 (358)
+..+|.+++|++..... ....+.+.+.|++.+++|+.+++.++++++|+|..+. ..+|+||++||..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~- 155 (248)
T d2o23a1 77 FGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE- 155 (248)
T ss_dssp HSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH-
T ss_pred cccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc-
Confidence 88999999998765332 2345678899999999999999999999999987552 1358999999999874
Q ss_pred CcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 192 TLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
+.+++..|+.||+|+.+|+++|++|+ ++.||+||+|+||+++|++
T Consensus 156 ----------------------------------~~~~~~~Y~asKaal~~lt~~la~e~-~~~gIrvN~I~PG~i~T~~ 200 (248)
T d2o23a1 156 ----------------------------------GQVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPL 200 (248)
T ss_dssp ----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC-
T ss_pred ----------------------------------CCCCchHHHHHHHHHHHHHHHHHHHh-cccCcceeeeccCceecch
Confidence 56788999999999999999999999 8889999999999999986
Q ss_pred ccccchhhhhhhcchhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 272 LFREHIPLFRLLFPPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
...-. . ..........+. +|+.+|+|+|++++||+++ .++||+.+.
T Consensus 201 ~~~~~-~--~~~~~~~~~~pl~~R~g~peevA~~v~fL~s~--~~itGq~I~ 247 (248)
T d2o23a1 201 LTSLP-E--KVCNFLASQVPFPSRLGDPAEYAHLVQAIIEN--PFLNGEVIR 247 (248)
T ss_dssp ------------CHHHHTCSSSCSCBCHHHHHHHHHHHHHC--TTCCSCEEE
T ss_pred hhcCC-H--HHHHHHHhcCCCCCCCcCHHHHHHHHHHHHhC--CCCCceEeE
Confidence 54321 1 111122233343 6788999999999999974 479999875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-36 Score=274.15 Aligned_cols=243 Identities=14% Similarity=0.127 Sum_probs=202.3
Q ss_pred cCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
-|+||++|||||++ |||+++|+.|+++|+ +|++++|+++..+.+. ++.....+...+..|+++..++...++++.+
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVE-EFAAQLGSDIVLQCDVAEDASIDTMFAELGK 79 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHH-HHHHHTTCCCEEECCTTCHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH-HHHhhcCCcceeecccchHHHHHHHHHHhhh
Confidence 48999999999998 899999999999996 8999999976555443 3333445678889999999999999999999
Q ss_pred cCCCccEEEEcccccCCCC----CCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 120 SGRPLDVLVCNAAVYLPTA----KEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
.++++|++|||++...... .......+.|...+.+|+.+.+.+.+.+.+.+.+. +.||++||..+..
T Consensus 80 ~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~Ii~iss~~~~~----- 150 (258)
T d1qsga_ 80 VWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPG----SALLTLSYLGAER----- 150 (258)
T ss_dssp TCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEE----EEEEEEECGGGTS-----
T ss_pred cccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCC----cEEEEecchhhcc-----
Confidence 9999999999998864321 11235667799999999999999999999998764 5899999988763
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
+.+....|+.||+|+..|+|++|+|+ +++||+||+|+||+|+|++...
T Consensus 151 ------------------------------~~~~~~~Y~~sKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~- 198 (258)
T d1qsga_ 151 ------------------------------AIPNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASG- 198 (258)
T ss_dssp ------------------------------BCTTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGG-
T ss_pred ------------------------------CCCCcHHHHHHHHHHHHHHHHHHHHh-CccCceeecccccccccccccc-
Confidence 55677889999999999999999999 8899999999999999986533
Q ss_pred chhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 276 HIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
...............|.+++.+|+|+|.+++||+++.+.++||+.+..||+.
T Consensus 199 ~~~~~~~~~~~~~~~pl~R~~~peeia~~v~fL~s~~s~~itG~~i~vDGG~ 250 (258)
T d1qsga_ 199 IKDFRKMLAHCEAVTPIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGF 250 (258)
T ss_dssp STTHHHHHHHHHHHSTTSSCCCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred cchhhhHHHHHHhCCCCCCCcCHHHHHHHHHHHhCchhcCccCceEEECcCH
Confidence 2222233334455677788999999999999999999889999999999974
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.1e-36 Score=273.00 Aligned_cols=218 Identities=19% Similarity=0.215 Sum_probs=187.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
|+||++||||||+|||+++|+.|+++|+ +|++++|+.+.++++.+++.. .+..+..+.+|+++.+.+..+++.+...+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 90 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 90 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999995 999999999999888776543 46678899999999999999999999999
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+.+|+++||||.... ..+.+.+.++|++++++|+.+++.+++.++|+|+++. |+||++||..+..
T Consensus 91 g~~~~li~nag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~---G~ii~isS~~~~~----------- 155 (269)
T d1xu9a_ 91 GGLDMLILNHITNTS-LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN---GSIVVVSSLAGKV----------- 155 (269)
T ss_dssp TSCSEEEECCCCCCC-CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT---CEEEEEEEGGGTS-----------
T ss_pred CCccccccccccccc-cccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC---CcceEeccchhcC-----------
Confidence 999999999998755 3566789999999999999999999999999998653 8999999999874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.++...|++||+|+.+|+++|+.|+.. ..||+||+|+||+|+|++.......
T Consensus 156 ------------------------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~~~~~~-- 209 (269)
T d1xu9a_ 156 ------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAMKAVSG-- 209 (269)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHHHHSCG--
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHHHhccC--
Confidence 6788999999999999999999999832 4589999999999999855332111
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcC
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSD 311 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~ 311 (358)
.......+|+++|+.++.....
T Consensus 210 ---------~~~~~~~~~e~~a~~i~~~~~~ 231 (269)
T d1xu9a_ 210 ---------IVHMQAAPKEECALEIIKGGAL 231 (269)
T ss_dssp ---------GGGGGCBCHHHHHHHHHHHHHT
T ss_pred ---------CccccCCCHHHHHHHHHHHhhc
Confidence 1112345899999999886643
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=1.8e-36 Score=276.57 Aligned_cols=268 Identities=13% Similarity=0.075 Sum_probs=193.8
Q ss_pred cCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
-|+||++|||||+| |||+++|+.|+++|+ +|++++|+++ +++..+++...+....++++|+++..+++++++++.+
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 79 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK 79 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH
Confidence 38999999999875 999999999999996 9999999854 4444555555566778899999999999999999999
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.++++|++|||+|.........+...+.+.....++....+.+.......+.... .++.|+++|+.....
T Consensus 80 ~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~~~~~~--------- 149 (274)
T d2pd4a1 80 DLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLN-NGASVLTLSYLGSTK--------- 149 (274)
T ss_dssp HTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEE-EEEEEEEEECGGGTS---------
T ss_pred HcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccc-cCcceeeeccccccc---------
Confidence 9999999999999875433232222233333333333333323333322222221 124565566555442
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL 279 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~ 279 (358)
+.+....|+.+|+|+.+++|+++.|+ ++.||+||+|+||++.|++... ....
T Consensus 150 --------------------------~~~~~~~y~asK~al~~ltr~lA~e~-~~~GIrvN~I~PG~v~T~~~~~-~~~~ 201 (274)
T d2pd4a1 150 --------------------------YMAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSG-IADF 201 (274)
T ss_dssp --------------------------BCTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGG-STTH
T ss_pred --------------------------ccccchhhhHHHHHHHHHHHhhHHHh-cCcCceecccccCcccCccccc-cCch
Confidence 44567789999999999999999999 8899999999999999985533 2222
Q ss_pred hhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCCcccccccc-hhccCHHHHHHHHHHHH
Q 018331 280 FRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDSASFENQLS-QEASDVEKARKVWEISE 352 (358)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~w~~~~ 352 (358)
...........+.+++.+|+|+|..++||+++.+.++||+.|..||+.. .... +....++.+..+|.+.+
T Consensus 202 ~~~~~~~~~~~p~~r~~~pedIA~~v~fL~S~~s~~itG~~i~vDGG~~---~~g~~~~~~~~~~~~~~~~~~~ 272 (274)
T d2pd4a1 202 RMILKWNEINAPLRKNVSLEEVGNAGMYLLSSLSSGVSGEVHFVDAGYH---VMGMGAVEEKDNKATLLWDLHK 272 (274)
T ss_dssp HHHHHHHHHHSTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTGG---GBSSCCCTTCTTTTCCHHHHSS
T ss_pred HHHHHHHhhhhhccCCcCHHHHHHHHHHHhChhhCCCcCceEEECCChh---hccCCcccccccchhhhhhhhc
Confidence 2222334445667889999999999999999998899999999999853 2222 32455566888998765
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=1.1e-35 Score=272.28 Aligned_cols=239 Identities=15% Similarity=0.103 Sum_probs=183.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEec-ChHHHHHHHHHhcCC-CCceE-----------------EEEecCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACR-DFLKAERAAKSAGMA-KENYT-----------------IMHLDLAS 106 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r-~~~~~~~~~~~~~~~-~~~i~-----------------~~~~Dl~~ 106 (358)
+++|||||++|||+++|++|+++|+ +|++++| +.+.++...+++... +.... .+.+|+++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~ 81 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL 81 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence 4899999999999999999999996 7777655 556666666666432 22333 34567999
Q ss_pred HHHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHH--------------hhhhhhhhHHHHHHHHHHHHHhc
Q 018331 107 LDSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFE--------------LSVGTNHLGHFLLSRLLLDDLKQ 172 (358)
Q Consensus 107 ~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~--------------~~~~vN~~~~~~l~~~~~~~l~~ 172 (358)
.++++++++++.+++|+||+||||||..... ++.+.+.+.|+ ..|.+|+.+++.+++.+.+.+..
T Consensus 82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 160 (284)
T d1e7wa_ 82 FTRCAELVAACYTHWGRCDVLVNNASSFYPT-PLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAG 160 (284)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCC-CCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEecCCccCCC-chhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhh
Confidence 9999999999999999999999999987553 44455554443 57899999999999999987643
Q ss_pred CC----CCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHH
Q 018331 173 SD----YPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFH 248 (358)
Q Consensus 173 ~~----~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la 248 (358)
.. ...++||+++|..... +.++...|+.||+|+.+|++.+|
T Consensus 161 ~~~~~~~~~~~ii~~~s~~~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~lA 205 (284)
T d1e7wa_ 161 TPAKHRGTNYSIINMVDAMTNQ-----------------------------------PLLGYTIYTMAKGALEGLTRSAA 205 (284)
T ss_dssp SCGGGSCSCEEEEEECCTTTTS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCcccccccccccC-----------------------------------CccceeeeccccccchhhhHHHH
Confidence 21 1247899998888763 56788899999999999999999
Q ss_pred HhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhh-hcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 249 RRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 249 ~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
+|+ ++.||+||+|+||++.+...... ..........+ .+++.+|+|+|++++||+++.+.++||+.+..||+.
T Consensus 206 ~el-~~~gIrvN~I~PG~t~~~~~~~~-----~~~~~~~~~~pl~~R~~~peeiA~~v~fL~S~~s~~itG~~i~VDGG~ 279 (284)
T d1e7wa_ 206 LEL-APLQIRVNGVGPGLSVLVDDMPP-----AVWEGHRSKVPLYQRDSSAAEVSDVVIFLCSSKAKYITGTCVKVDGGY 279 (284)
T ss_dssp HHH-GGGTEEEEEEEESSBCCGGGSCH-----HHHHHHHTTCTTTTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHh-CCccccccccccccccccccCCH-----HHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCeEEECcCh
Confidence 999 88899999999998766432221 11122233334 367889999999999999999889999999999974
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=1e-35 Score=274.38 Aligned_cols=249 Identities=15% Similarity=0.087 Sum_probs=193.2
Q ss_pred cccCCCCeEEEEcCCC--chHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---------CC--c-eEEEEec--
Q 018331 40 KKTLRKGSVIITGASS--GLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---------KE--N-YTIMHLD-- 103 (358)
Q Consensus 40 ~~~l~~k~~lITGas~--gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---------~~--~-i~~~~~D-- 103 (358)
+.||+||++|||||+| |||+++|++|+++|+ +|++++|+.............. .. . -....+|
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAV 81 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTT
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhh
Confidence 4689999999999876 999999999999997 9999999764433222221110 00 1 1233333
Q ss_pred ------------------CCCHHHHHHHHHHHHhcCCCccEEEEcccccC-CCCCCCCCCHHhHHhhhhhhhhHHHHHHH
Q 018331 104 ------------------LASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL-PTAKEPTFTAEGFELSVGTNHLGHFLLSR 164 (358)
Q Consensus 104 ------------------l~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 164 (358)
.++..+++++++++.+++++||+||||||... ...++.+.+.++|++.+++|+.+++.+++
T Consensus 82 ~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~ 161 (297)
T d1d7oa_ 82 FDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLS 161 (297)
T ss_dssp CCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhh
Confidence 35566778999999999999999999999753 23467788999999999999999999999
Q ss_pred HHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHH
Q 018331 165 LLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTM 244 (358)
Q Consensus 165 ~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~ 244 (358)
++++.+.++ +.++++++..... ...+....|+.+|+++..++
T Consensus 162 ~~~~~~~~~----g~~~~~~~~~~~~----------------------------------~~~~~~~~y~~aKaa~~~l~ 203 (297)
T d1d7oa_ 162 HFLPIMNPG----GASISLTYIASER----------------------------------IIPGYGGGMSSAKAALESDT 203 (297)
T ss_dssp HHGGGEEEE----EEEEEEECGGGTS----------------------------------CCTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHhhcC----Ccceeeeehhhcc----------------------------------cccccccceecccccccccc
Confidence 999988875 5777777765442 12345668999999999999
Q ss_pred HHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 245 QEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 245 ~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
+.++.++..+.||+||+|+||+++|++..... .............|.+++.+|+|+|.+++||+++.+.++||+.+..|
T Consensus 204 ~~~a~e~~~~~gIrvN~I~PG~i~T~~~~~~~-~~~~~~~~~~~~~PlgR~~~peevA~~v~fL~S~~a~~itGq~i~vD 282 (297)
T d1d7oa_ 204 RVLAFEAGRKQNIRVNTISAGPLGSRAAKAIG-FIDTMIEYSYNNAPIQKTLTADEVGNAAAFLVSPLASAITGATIYVD 282 (297)
T ss_dssp HHHHHHHHHHHCCEEEEEEECCCBCCCSSCCS-HHHHHHHHHHHHSSSCCCBCHHHHHHHHHHHTSGGGTTCCSCEEEES
T ss_pred cccchhccccceEEecccccccccchhhhhcc-CCHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCchhcCCcCceEEEC
Confidence 99999994467999999999999998664322 22222333445567788999999999999999999999999999999
Q ss_pred CCCc
Q 018331 325 KDSA 328 (358)
Q Consensus 325 ~~~~ 328 (358)
|+..
T Consensus 283 GG~s 286 (297)
T d1d7oa_ 283 NGLN 286 (297)
T ss_dssp TTGG
T ss_pred cCHh
Confidence 9853
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=6.8e-36 Score=279.84 Aligned_cols=243 Identities=10% Similarity=0.073 Sum_probs=189.4
Q ss_pred CCCeEEEEc--CCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC-C-----------CCceEEE---------
Q 018331 44 RKGSVIITG--ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM-A-----------KENYTIM--------- 100 (358)
Q Consensus 44 ~~k~~lITG--as~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~-~-----------~~~i~~~--------- 100 (358)
.+|++|||| +++|||+++|+.|+++|| +|++++++............. . .......
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNV-KIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTA 79 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCC-EEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhh
Confidence 379999999 668999999999999997 899988876544333222111 0 0011222
Q ss_pred -----------EecCCCHHHHHHHHHHHHhcCCCccEEEEcccccCC-CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHH
Q 018331 101 -----------HLDLASLDSVRQFVDTFRRSGRPLDVLVCNAAVYLP-TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLD 168 (358)
Q Consensus 101 -----------~~Dl~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~ 168 (358)
.+|+++.++++++++++.+.+|+||+||||+|.... ..++.+++.++|++.+++|+.+++.++|+++|
T Consensus 80 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~ 159 (329)
T d1uh5a_ 80 NDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVN 159 (329)
T ss_dssp GGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred cccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHh
Confidence 236778889999999999999999999999997643 23567889999999999999999999999999
Q ss_pred HHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCch-hhhhHHhHHHHHHHHHHH
Q 018331 169 DLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDG-AKAYKDSKVCNMLTMQEF 247 (358)
Q Consensus 169 ~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~al~~~~~~l 247 (358)
+|++. |+||++||..+.. +.++ ...|+.||+|+++|+|.|
T Consensus 160 ~m~~~----GsIv~iss~~~~~-----------------------------------~~p~y~~~y~asKaal~~ltr~l 200 (329)
T d1uh5a_ 160 IMKPQ----SSIISLTYHASQK-----------------------------------VVPGYGGGMSSAKAALESDTRVL 200 (329)
T ss_dssp GEEEE----EEEEEEECGGGTS-----------------------------------CCTTCTTTHHHHHHHHHHHHHHH
T ss_pred hcccc----cccccceeehhcc-----------------------------------cccccchhhhhhhccccccchhh
Confidence 99764 7999999988764 3343 457999999999999999
Q ss_pred HHhhccc-CCcEEEEecCCcccCCcccc------------------------------------------cchhhhhhhc
Q 018331 248 HRRFHEE-TGIAFASLYPGCIATTGLFR------------------------------------------EHIPLFRLLF 284 (358)
Q Consensus 248 a~e~~~~-~gI~v~~v~PG~v~t~~~~~------------------------------------------~~~~~~~~~~ 284 (358)
|.|+ ++ .|||||+|+||+|+|++... ..........
T Consensus 201 A~El-a~~~gIRVNaI~PG~i~T~a~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (329)
T d1uh5a_ 201 AYHL-GRNYNIRINTISAGPLKSRAATAINKLNNTYENNTNQNKNRNRHDVHNIMNNSGEKEEKKISASQNYTFIDYAIE 279 (329)
T ss_dssp HHHH-HHHHCCEEEEEEECCCCCTTGGGCC------------------------------------------CHHHHHHH
T ss_pred HHHH-hcccCcEEEEEecCcccchhhhcccchhhhhhhhhhhhhccccccccccccccccccchhhhhhhcccchHHHHH
Confidence 9999 54 69999999999999953211 0000111111
Q ss_pred chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
......|.++..+|+|+|.+++||+++.+.++||+.|.+||+.
T Consensus 280 ~~~~~~Pl~R~~~pedvA~~v~fLaSd~s~~iTGq~i~VDGG~ 322 (329)
T d1uh5a_ 280 YSEKYAPLRQKLLSTDIGSVASFLLSRESRAITGQTIYVDNGL 322 (329)
T ss_dssp HHHHHSSSCSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred HHhccCCCCCCcCHHHHHHHHHHHhCchhCCccCCeEEECCCc
Confidence 2334557788999999999999999999999999999999985
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=7.1e-36 Score=266.90 Aligned_cols=219 Identities=13% Similarity=0.098 Sum_probs=181.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc--C
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS--G 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~--~ 121 (358)
+||++|||||++|||+++++.|+++|+ +|++++++... .......+.+|..+.++++.+...+.+. .
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENE----------EASASVIVKMTDSFTEQADQVTAEVGKLLGD 69 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCT----------TSSEEEECCCCSCHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCccc----------cccccceeecccCcHHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999995 99999887532 1234566778888899988888877664 4
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|+||||||.........+.+.+.|++.+++|+.+++.++++++|+|++. |+||++||..+..
T Consensus 70 ~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----G~Iv~isS~~~~~----------- 134 (236)
T d1dhra_ 70 QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG----GLLTLAGAKAALD----------- 134 (236)
T ss_dssp CCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS-----------
T ss_pred CCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc----cceeEEccHHHcC-----------
Confidence 5799999999976555556677789999999999999999999999999763 7999999998874
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccchhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLF 280 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~~~~ 280 (358)
+.+++..|+.||+|+.+|+++|+.|+.. ++||+||+|+||+++|++..... +
T Consensus 135 ------------------------~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~~~~-~-- 187 (236)
T d1dhra_ 135 ------------------------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNRKSM-P-- 187 (236)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHHHHS-T--
T ss_pred ------------------------CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcchhhC-c--
Confidence 6678899999999999999999999932 57999999999999998543221 1
Q ss_pred hhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 281 RLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
.....++.+|+++++.+++|+++....++|.++.+
T Consensus 188 --------~~~~~~~~~pe~va~~~~~l~s~~~~~i~G~~i~v 222 (236)
T d1dhra_ 188 --------EADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQV 222 (236)
T ss_dssp --------TSCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred --------cchhhcCCCHHHHHHHHHHHhCCCccCCCCCeEEE
Confidence 00123467899999999999999888899987754
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.5e-33 Score=254.05 Aligned_cols=240 Identities=18% Similarity=0.141 Sum_probs=184.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCC-CCceEEEEecCCC----HHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMA-KENYTIMHLDLAS----LDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~-~~~i~~~~~Dl~~----~~~i~~~~~~~~~ 119 (358)
+|+|||||++|||+++|++|+++|+ +|++++|+.+ ..+.+.+++... +.+....++|+.+ .+.++++++++.+
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFR 80 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHH
Confidence 4899999999999999999999996 9999998854 445556555443 5566777765544 5677788888888
Q ss_pred cCCCccEEEEcccccCCCCCC----------CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC---CCCeEEEEecC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKE----------PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSI 186 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~----------~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~---~~g~iv~vsS~ 186 (358)
++|+||++|||||+....... .+...+.+...+.+|..+.+...+...+.+..... ..+.+++++|.
T Consensus 81 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (266)
T d1mxha_ 81 AFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDA 160 (266)
T ss_dssp HHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCG
T ss_pred HhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhc
Confidence 899999999999987543211 12345567788899999999999888887654321 24677788887
Q ss_pred CCCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCc
Q 018331 187 TGNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGC 266 (358)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~ 266 (358)
.+.. +.+++..|+.||+|+++|++.+|+++ .+.||+||+|+||+
T Consensus 161 ~~~~-----------------------------------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~ 204 (266)
T d1mxha_ 161 MTDL-----------------------------------PLPGFCVYTMAKHALGGLTRAAALEL-APRHIRVNAVAPGL 204 (266)
T ss_dssp GGGS-----------------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESS
T ss_pred cccc-----------------------------------cCcchhhhhhhHHHHhhhHHHHHHHh-CccCcEEEEeccCc
Confidence 7663 56789999999999999999999999 78899999999999
Q ss_pred ccCCcccccchhhhhhhcchhHHhhhcC-ccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 267 IATTGLFREHIPLFRLLFPPFQKYITKG-YVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 267 v~t~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
++|++....... .......+..+ +.+|+|+|.+++||+++.+.++||+.|..||+.
T Consensus 205 i~t~~~~~~~~~-----~~~~~~~pl~r~~~~peeva~~v~fL~s~~s~~itG~~i~vDGG~ 261 (266)
T d1mxha_ 205 SLLPPAMPQETQ-----EEYRRKVPLGQSEASAAQIADAIAFLVSKDAGYITGTTLKVDGGL 261 (266)
T ss_dssp BSCCSSSCHHHH-----HHHHTTCTTTSCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred EeccccCCHHHH-----HHHHhcCCCCCCCCCHHHHHHHHHHHhCchhCCccCCeEEECccH
Confidence 999865442211 11222333333 479999999999999999989999999999974
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=3.7e-33 Score=253.40 Aligned_cols=242 Identities=12% Similarity=0.071 Sum_probs=188.3
Q ss_pred cCCCCeEEEEcC--CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGA--SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGa--s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
-|+||++||||| ++|||+++|++|+++|| +|++++|+..++.+.. .+..+.+...+++|+++.+++.++++.+.+
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~--~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~ 79 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRI--TDRLPAKAPLLELDVQNEEHLASLAGRVTE 79 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHH--HTTSSSCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHH--HHHcCCceeeEeeecccccccccccchhhh
Confidence 489999999994 57999999999999997 9999999876543322 223456788899999999999999998876
Q ss_pred c---CCCccEEEEcccccCC----CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCC
Q 018331 120 S---GRPLDVLVCNAAVYLP----TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNT 192 (358)
Q Consensus 120 ~---~~~iD~lv~~ag~~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~ 192 (358)
. ++++|++|||+|.... ...+.+.+.+.|.+.+.+|+.+.+...+...+.+.. +.+++++|.....
T Consensus 80 ~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~i~~~s~~~~~-- 152 (268)
T d2h7ma1 80 AIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP-----GGSIVGMDFDPSR-- 152 (268)
T ss_dssp HHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE-----EEEEEEEECCCSS--
T ss_pred ccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc-----ccccccccccccc--
Confidence 4 5789999999997532 124456788999999999999999999888776554 3455555544432
Q ss_pred cCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcc
Q 018331 193 LAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGL 272 (358)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~ 272 (358)
+.+++..|+.+|+|+.+|++++++|+ .+.||+||+|+||+++|+++
T Consensus 153 ---------------------------------~~p~~~~y~~sK~a~~~ltr~lA~e~-~~~gIrVN~V~PG~v~T~~~ 198 (268)
T d2h7ma1 153 ---------------------------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLAM 198 (268)
T ss_dssp ---------------------------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHHH
T ss_pred ---------------------------------cCcccchhhccccchhhccccchhhh-hccCCcceEEecCCCCChhh
Confidence 55778899999999999999999999 88899999999999999865
Q ss_pred cccchh--------hhhhhc-chhHHhhh-cCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 273 FREHIP--------LFRLLF-PPFQKYIT-KGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 273 ~~~~~~--------~~~~~~-~~~~~~~~-~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
..-... ...... ......|. +++.+|+|+|+.++||+++.+.++||+.|.+||+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~ 263 (268)
T d2h7ma1 199 SAIVGGALGEEAGAQIQLLEEGWDQRAPIGWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 263 (268)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHHHHHCTTCCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred hhhccchhhhhhccchHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCc
Confidence 321110 011111 11223333 34889999999999999999989999999999975
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.3e-33 Score=252.32 Aligned_cols=228 Identities=21% Similarity=0.173 Sum_probs=183.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|++|||||++|||+++|++|+++|+ +|++++|+++ ..+...+++|+++...+..+......... .
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~ 66 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE------------GEDLIYVEGDVTREEDVRRAVARAQEEAP-L 66 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC------------SSSSEEEECCTTCHHHHHHHHHHHHHHSC-E
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcc------------cccceEeeccccchhhhHHHHHhhhcccc-c
Confidence 58999999999999999999999996 9999999753 24667889999999999999888777654 5
Q ss_pred cEEEEcccccCC---CCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCC----CCCCeEEEEecCCCCCCCcCCCC
Q 018331 125 DVLVCNAAVYLP---TAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSD----YPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 125 D~lv~~ag~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~----~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
+.++++++.... .......+.+.|++.+++|+.+++.+++.+.+.+.... ...|+||++||..+..
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~------- 139 (241)
T d1uaya_ 67 FAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE------- 139 (241)
T ss_dssp EEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH-------
T ss_pred cchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc-------
Confidence 566666655422 12333567789999999999999999999999865431 1258999999998874
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
+.++...|+.||+|+.+|+++||.|+ ++.||+||+|+||+++|++......
T Consensus 140 ----------------------------~~~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~ 190 (241)
T d1uaya_ 140 ----------------------------GQIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPE 190 (241)
T ss_dssp ----------------------------CCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSCH
T ss_pred ----------------------------CCCCchhhHHHHHHHHHHHHHHHHHH-hhcCCceeeecCCcccccccchhhh
Confidence 56788899999999999999999999 8889999999999999986654332
Q ss_pred hhhhhhcchhHHhh-hcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 278 PLFRLLFPPFQKYI-TKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 278 ~~~~~~~~~~~~~~-~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ......+ .+++.+|+|+|+.++||+++ .++||+.+..||+.
T Consensus 191 ~~~~---~~~~~~~~~~R~g~pedvA~~v~fL~s~--~~iTG~~i~VDGG~ 236 (241)
T d1uaya_ 191 KAKA---SLAAQVPFPPRLGRPEEYAALVLHILEN--PMLNGEVVRLDGAL 236 (241)
T ss_dssp HHHH---HHHTTCCSSCSCCCHHHHHHHHHHHHHC--TTCCSCEEEESTTC
T ss_pred hHHH---HHHhcCCCCCCCcCHHHHHHHHHHHHhC--CCCCCCEEEECCcc
Confidence 2211 1122222 26788999999999999984 47999999999975
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=7.5e-34 Score=253.52 Aligned_cols=217 Identities=13% Similarity=0.137 Sum_probs=175.3
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh--cCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~--~~~~ 123 (358)
++||||||++|||++++++|+++| ++|++++|+..+. ......+.+|+.+.++.....+.+.. .+++
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G-~~V~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 71 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNG-YTVLNIDLSANDQ----------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQ 71 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT-EEEEEEESSCCTT----------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCchhc----------ccccceeccccCchhHHHHHHHHHHHHhcCCC
Confidence 457999999999999999999999 5999999986421 13445667888888888877776666 4689
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
||+||||||.........+.+.+.|+.++++|+.+++.++++++|+|++. |+||++||..+..
T Consensus 72 iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~----g~Iv~isS~~~~~------------- 134 (235)
T d1ooea_ 72 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG----GLLQLTGAAAAMG------------- 134 (235)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE----EEEEEECCGGGGS-------------
T ss_pred eeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc----eEEEEeccHHhcC-------------
Confidence 99999999987554455566678899999999999999999999999764 7999999998874
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-cCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-ETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+.+++..|++||+|+.+|+++|+.|+.. ..+|+||+|+||+++|++..... +
T Consensus 135 ----------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~~~-~---- 187 (235)
T d1ooea_ 135 ----------------------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRKWM-P---- 187 (235)
T ss_dssp ----------------------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHHHS-T----
T ss_pred ----------------------CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhhhC-c----
Confidence 6678899999999999999999999932 57999999999999998543221 1
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCC-CCCCCceeeec
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDP-SLTKSGVYWSW 323 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~-~~~~~G~~~~~ 323 (358)
.....++++|+++++.+++++.++ ...++|.++..
T Consensus 188 ------~~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~~i~v 223 (235)
T d1ooea_ 188 ------NADHSSWTPLSFISEHLLKWTTETSSRPSSGALLKI 223 (235)
T ss_dssp ------TCCGGGCBCHHHHHHHHHHHHHCGGGCCCTTCEEEE
T ss_pred ------CCccccCCCHHHHHHHHHHHhcCccccCCCceEEEE
Confidence 011235679999999998666554 44589999876
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.97 E-value=1.2e-29 Score=228.62 Aligned_cols=245 Identities=19% Similarity=0.194 Sum_probs=165.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc-CCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS-GRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~-~~~i 124 (358)
|+||||||++|||+++|++|+++|+ +|++++|++.+ ..+|+.+....+....++..+ .+.+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~~-----------------~~~d~~~~~~~~~~~~~~~~~~~~~i 63 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAE-----------------VIADLSTAEGRKQAIADVLAKCSKGM 63 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSS-----------------EECCTTSHHHHHHHHHHHHTTCTTCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChHH-----------------HHHHhcCHHHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999999995 99999987421 357999998888876665544 5689
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|++|||||.... .+.+.....+|+.+...+.+...+.+.+... ..+.++++.....-..... + ...
T Consensus 64 d~lv~~Ag~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---~~~ 129 (257)
T d1fjha_ 64 DGLVLCAGLGPQ--------TKVLGNVVSVNYFGATELMDAFLPALKKGHQ--PAAVVISSVASAHLAFDKN-P---LAL 129 (257)
T ss_dssp SEEEECCCCCTT--------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSS--CEEEEECCGGGGSSCGGGC-T---THH
T ss_pred cEEEEcCCCCCc--------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc--Ccceeeeeccccchhhhhh-h---hhh
Confidence 999999997532 2447788899999999999999999887653 5666666544321000000 0 000
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
... .+.+-. -..........++...|+.||+|+++|+|++|.|+ ++.||+||+|+||+++|+++....... ....
T Consensus 130 ~~~--~g~~~~-i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~-~~~~ 204 (257)
T d1fjha_ 130 ALE--AGEEAK-ARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDP-RYGE 204 (257)
T ss_dssp HHH--HTCHHH-HHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC------------------
T ss_pred hcc--CCcEEE-EeeehhccCCCcchHHHHHHhhhhhcccccccccc-ccccccccccccCCcCChhHHhhcCCH-HHHH
Confidence 000 000000 00000011133556789999999999999999999 888999999999999999764432210 1111
Q ss_pred chhH-HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCCC
Q 018331 285 PPFQ-KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKDS 327 (358)
Q Consensus 285 ~~~~-~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~~ 327 (358)
.... ..|.+++.+|+|+|++++||+++.+.++||+.+.+||+-
T Consensus 205 ~~~~~~~PlgR~g~p~eva~~v~fL~S~~s~~itG~~i~vDGG~ 248 (257)
T d1fjha_ 205 SIAKFVPPMGRRAEPSEMASVIAFLMSPAASYVHGAQIVIDGGI 248 (257)
T ss_dssp ----CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSCEEEESTTH
T ss_pred HHHhcCCCCCCCcCHHHHHHHHHHHhCchhCCccCceEEeCCCc
Confidence 1111 236678999999999999999999999999999999974
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.96 E-value=7.4e-29 Score=223.91 Aligned_cols=215 Identities=20% Similarity=0.238 Sum_probs=166.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh---HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF---LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~---~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++|+|||||++|||++++++|+++|+.+|++++|+. +..+...++++..+.++.++.||+++.++++++++.+.+.
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~- 87 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD- 87 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT-
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc-
Confidence 469999999999999999999999976788999874 3455666666666788999999999999999999987665
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
+++|.||||+|.... ..+.+.+.+.|+..+++|+.+++.+.+++ .... .++||++||..+..
T Consensus 88 ~~i~~vv~~ag~~~~-~~~~~~~~~~~~~~~~~~~~g~~~l~~~~----~~~~--~~~iv~~SS~a~~~----------- 149 (259)
T d2fr1a1 88 VPLSAVFHAAATLDD-GTVDTLTGERIERASRAKVLGARNLHELT----RELD--LTAFVLFSSFASAF----------- 149 (259)
T ss_dssp SCEEEEEECCCCCCC-CCGGGCCHHHHHHHTHHHHHHHHHHHHHH----TTSC--CSEEEEEEEHHHHT-----------
T ss_pred ccccccccccccccc-cccccccHHHHHHHhhhhccchhHHHHHh----hccC--CceEeeecchhhcc-----------
Confidence 589999999999865 46778899999999999999999887754 3322 47999999999875
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+.+++..|+++|++++.|++.++. .|+++++|+||.+.++++...... .
T Consensus 150 ------------------------g~~~~~~YaAaka~l~~la~~~~~-----~Gi~v~~I~pg~~~~~g~~~~~~~--~ 198 (259)
T d2fr1a1 150 ------------------------GAPGLGGYAPGNAYLDGLAQQRRS-----DGLPATAVAWGTWAGSGMAEGPVA--D 198 (259)
T ss_dssp ------------------------CCTTCTTTHHHHHHHHHHHHHHHH-----TTCCCEEEEECCBC-------------
T ss_pred ------------------------CCcccHHHHHHHHhHHHHHHHHHh-----CCCCEEECCCCcccCCccccchHH--H
Confidence 567888999999999888776643 499999999999988766443211 1
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSL 314 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~ 314 (358)
. +... ....++|+++++.+..++.....
T Consensus 199 ~----~~~~-G~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 199 R----FRRH-GVIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp -----CTTT-TEECBCHHHHHHHHHHHHHTTCS
T ss_pred H----HHhc-CCCCCCHHHHHHHHHHHHhCCCc
Confidence 1 1111 11346899999999999876543
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.8e-19 Score=169.15 Aligned_cols=235 Identities=11% Similarity=0.046 Sum_probs=157.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
|+||||||||.||.++++.|+++| +.|++++|.... .+...........++.++++|++|.+++.++++..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 77 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKG-YEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREV--- 77 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHH---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhcc---
Confidence 789999999999999999999999 699999985432 22222222333568999999999999999998865
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+|+|+|+|+...... ..+..+..+++|+.|+.+++.++...-.+. ..++|++||...+. ...
T Consensus 78 --~~d~v~h~aa~~~~~~-----~~~~~~~~~~~Nv~gt~nllea~~~~~~~~---~~r~i~~SS~~vYG-~~~------ 140 (357)
T d1db3a_ 78 --QPDEVYNLGAMSHVAV-----SFESPEYTADVDAMGTLRLLEAIRFLGLEK---KTRFYQASTSELYG-LVQ------ 140 (357)
T ss_dssp --CCSEEEECCCCCTTTT-----TTSCHHHHHHHHTHHHHHHHHHHHHTTCTT---TCEEEEEEEGGGGT-TCC------
T ss_pred --CCCEEEEeecccccch-----hhhCHHHHHHHHHHHHHHHHHHHHHhCCCC---CcEEEEEEchhhhC-CCC------
Confidence 6899999999875432 234456678999999999999986554333 25899999976431 110
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP-- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~-- 278 (358)
..+.+|..+..+...|+.||.+.+.+++.+++.. ++.+..++|+.+.+|........
T Consensus 141 -----------------~~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~----~l~~~ilR~~~vyGp~~~~~~~~~~ 199 (357)
T d1db3a_ 141 -----------------EIPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRRGETFVTRK 199 (357)
T ss_dssp -----------------SSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHHHH
T ss_pred -----------------CCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEEeccccCCCCCcCCCchH
Confidence 1122333444456789999999999999888775 79999999999988854332211
Q ss_pred hhhhhcchhH----------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 279 LFRLLFPPFQ----------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 279 ~~~~~~~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
+...+..... ......++.++|++++++.++... ..+.|....+
T Consensus 200 i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~---~~~~yni~sg 253 (357)
T d1db3a_ 200 ITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQE---QPEDFVIATG 253 (357)
T ss_dssp HHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSS---SCCCEEECCC
T ss_pred HHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCC---CCCeEEECCC
Confidence 1111110000 001123688999999999888653 2344444333
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=4.6e-17 Score=151.20 Aligned_cols=226 Identities=10% Similarity=0.042 Sum_probs=152.4
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH-----HHHHHHHhc-CCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK-----AERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~-----~~~~~~~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
|+||||||+|.||.+++++|+++| +.|+.++|..+. ++....... ....++.++.+|+++.+.+.++++..
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g-~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~-- 78 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKG-YEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV-- 78 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH--
T ss_pred CEEEEecCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc--
Confidence 445999999999999999999999 699999985421 111111111 11357899999999999999998765
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPP 199 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~ 199 (358)
.+++++++++..... ...+.....+++|+.|+.++..++..+...+. .++|++||...+. . +
T Consensus 79 ---~~~~v~~~~a~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~---~~~i~~SS~~vyg-~-----~- 140 (347)
T d1t2aa_ 79 ---KPTEIYNLGAQSHVK-----ISFDLAEYTADVDGVGTLRLLDAVKTCGLINS---VKFYQASTSELYG-K-----V- 140 (347)
T ss_dssp ---CCSEEEECCSCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTT---CEEEEEEEGGGTC-S-----C-
T ss_pred ---ccceeeeeeeccccc-----hhhccchhhhhhHHHHHHHHHHHHHHcCCCCC---cEEEEecchheec-C-----C-
Confidence 688999998865321 13445566789999999999998876654432 5899999976442 1 1
Q ss_pred CCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh-
Q 018331 200 KANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~- 278 (358)
...+.+|..+..+...|+.||.+.+.+++.+++.. ++.+..++|+.+.+|........
T Consensus 141 -----------------~~~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~----~~~~~ilr~~~vyGp~~~~~~~~~ 199 (347)
T d1t2aa_ 141 -----------------QEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPRRGANFVTR 199 (347)
T ss_dssp -----------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHHH
T ss_pred -----------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCCCCCCcccc
Confidence 01122334455556789999999999988887765 88999999998888743322211
Q ss_pred -hhhhhcchhH----------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 279 -LFRLLFPPFQ----------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 279 -~~~~~~~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
....+..... ......++.++|+++++..++....
T Consensus 200 ~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~ 245 (347)
T d1t2aa_ 200 KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE 245 (347)
T ss_dssp HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS
T ss_pred ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCC
Confidence 1111110000 0011236899999999999987653
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.73 E-value=2.1e-17 Score=153.85 Aligned_cols=248 Identities=15% Similarity=0.086 Sum_probs=157.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc--CCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~--~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+||+||||||+|.||.+++++|+++| +.|+.+.|+.++.....+... ........+..|+++.+++..++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G-~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHG-YKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK------ 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT------
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc------
Confidence 48999999999999999999999999 699999999876665544332 223345667789999987666554
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
..|+++|+++..... .+ ....+..|+.|+.++++.+..... ..++|++||..+.............
T Consensus 83 -~~~~v~~~a~~~~~~-----~~---~~~~~~~nv~gt~~ll~~~~~~~~-----v~~~i~~SS~~~~~~~~~~~~~~~~ 148 (342)
T d1y1pa1 83 -GAAGVAHIASVVSFS-----NK---YDEVVTPAIGGTLNALRAAAATPS-----VKRFVLTSSTVSALIPKPNVEGIYL 148 (342)
T ss_dssp -TCSEEEECCCCCSCC-----SC---HHHHHHHHHHHHHHHHHHHHTCTT-----CCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred -cchhhhhhccccccc-----cc---ccccccchhhhHHHHHHhhhcccc-----cccccccccceeeccCCCCCCCccc
Confidence 689999999976322 12 345567899999988888754311 2599999997654322111000000
Q ss_pred Ccccc--ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch--
Q 018331 202 NLGDL--RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-- 277 (358)
Q Consensus 202 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-- 277 (358)
+.... ..+. ......+..+......|+.||.+.+.+++.+++.. ..++++.+++|+.+.+|.......
T Consensus 149 ~e~~~~~~~~~------~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~i~p~~v~Gp~~~~~~~~~ 220 (342)
T d1y1pa1 149 DEKSWNLESID------KAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN--KPHFTLNAVLPNYTIGTIFDPETQSG 220 (342)
T ss_dssp CTTCCCHHHHH------HHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH--CCSSEEEEEEESEEECCCSCTTTCCC
T ss_pred ccccccccccc------ccccccccCCCCCcCcccchhHhHHHHHHHhhhhc--ccccccceecccceeCCCCCcccccc
Confidence 00000 0000 00011233455677899999999999999888875 457888999999888874422111
Q ss_pred h---hhhhhc-----chhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 278 P---LFRLLF-----PPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 278 ~---~~~~~~-----~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
. +...+. ..........++.++|+|++++.++..+.. .|.++.
T Consensus 221 ~~~~~~~~l~~g~~~~~~~~~~~~~~v~v~Dva~~~i~~l~~~~~--~g~~~~ 271 (342)
T d1y1pa1 221 STSGWMMSLFNGEVSPALALMPPQYYVSAVDIGLLHLGCLVLPQI--ERRRVY 271 (342)
T ss_dssp HHHHHHHHHHTTCCCHHHHTCCSEEEEEHHHHHHHHHHHHHCTTC--CSCEEE
T ss_pred chHHHHHHHHcCCcCcccCCccceeeeeHHHHHHHHHHhhcCccc--cceEEE
Confidence 1 111110 111111112267899999999888876543 555553
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=6.5e-17 Score=150.09 Aligned_cols=180 Identities=14% Similarity=0.046 Sum_probs=130.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH---HHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLK---AERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~---~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+|||||+|.||++++++|+++| +.|++++|-... .....+.+ ...++.++++|++|.+.+.++++.. +
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~l~~~~~~~-----~ 73 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNG-HDVIILDNLCNSKRSVLPVIERL--GGKHPTFVEGDIRNEALMTEILHDH-----A 73 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTTHHHHHHHH--HTSCCEEEECCTTCHHHHHHHHHHT-----T
T ss_pred EEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHhh--cCCCCEEEEeecCCHHHHHHHHhcc-----C
Confidence 49999999999999999999999 699998763211 11111111 2357999999999999988887753 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+....+ .+.+..+..+++|+.|+..+++++...-. .++|++||...+......
T Consensus 74 ~d~ViHlAa~~~~~-----~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v------~~~i~~Ss~~vy~~~~~~-------- 134 (338)
T d1udca_ 74 IDTVIHFAGLKAVG-----ESVQKPLEYYDNNVNGTLRLISAMRAANV------KNFIFSSSATVYGDQPKI-------- 134 (338)
T ss_dssp CSEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCSCCSS--------
T ss_pred CCEEEECCCccchh-----hHHhCHHHHHHhHHHHHHHHHHHHHHhCC------CEEEecCcceEEcccccc--------
Confidence 99999999964221 13345568899999999999998876633 389999987755311100
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCc
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTG 271 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~ 271 (358)
...++.....+...|+.+|.+.+.+.+....+. .++.+..++|+.+.++.
T Consensus 135 ---------------~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~~ 184 (338)
T d1udca_ 135 ---------------PYVESFPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGAH 184 (338)
T ss_dssp ---------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECCC
T ss_pred ---------------ccccccccCCCcchHHHHHhhhhHHHHHHHhhc---cCCeEEEEeeccEEecc
Confidence 000111233456789999999999888777664 58899999999888764
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.72 E-value=1e-18 Score=149.72 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=93.9
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+|+||++|||||+||||+++++.|+++|+ +|++++|+.++++...+++... .++....+|+++.+++++++
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~----- 90 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKR-FKVNVTAAETADDASRAEAV----- 90 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHH-HTCCCEEEECCSHHHHHHHT-----
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhc-cchhhhhhhcccHHHHHHHh-----
Confidence 3589999999999999999999999999996 9999999998888887776532 34567889999999887764
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHH
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLL 166 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~ 166 (358)
+++|+||||||... ...+.+.|+..+.+|+.+.+.....+
T Consensus 91 --~~iDilin~Ag~g~-----~~~~~e~~~~~~~~nv~~~~~~~~~~ 130 (191)
T d1luaa1 91 --KGAHFVFTAGAIGL-----ELLPQAAWQNESSIEIVADYNAQPPL 130 (191)
T ss_dssp --TTCSEEEECCCTTC-----CCBCHHHHHTCTTCCEEEECCCSSSC
T ss_pred --cCcCeeeecCcccc-----ccCCHHHHHhhhcceeehhHhhHHHH
Confidence 47999999999642 24588999999999998877655444
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.71 E-value=1.5e-16 Score=146.11 Aligned_cols=223 Identities=13% Similarity=0.015 Sum_probs=151.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH-HHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA-ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~-~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|+||||||||.||++++++|+++| +.|+.++|..... ....+.+. ...++.++.+|+++.+.+.+++... ..
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g-~~V~~~~r~~~~~~~~~l~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~-----~~ 73 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKG-YRVHGLVARRSSDTRWRLRELG-IEGDIQYEDGDMADACSVQRAVIKA-----QP 73 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCHHHHHTT-CGGGEEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCc-CEEEEEECCCCcccHHHHHHhc-ccCCcEEEEccccChHHhhhhhccc-----cc
Confidence 689999999999999999999999 6999999864321 12222222 2357899999999999998887765 57
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
++++++++...... ..+.....+.+|+.|+..++.++...-.. .++++.||...+. ..
T Consensus 74 ~~~~~~a~~~~~~~-----~~~~~~~~~~~n~~g~~~~l~~~~~~~~~-----~~~i~~Ss~~~~~-~~----------- 131 (321)
T d1rpna_ 74 QEVYNLAAQSFVGA-----SWNQPVTTGVVDGLGVTHLLEAIRQFSPE-----TRFYQASTSEMFG-LI----------- 131 (321)
T ss_dssp SEEEECCSCCCHHH-----HTTSHHHHHHHHTHHHHHHHHHHHHHCTT-----SEEEEEEEGGGGC-SC-----------
T ss_pred cccccccccccccc-----cccchHHHHhhhhhchHHHHHHHHHhCCC-----cccccccchhhcC-cc-----------
Confidence 78888887653321 22345677899999999999988765443 3677777655331 10
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--hhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--LFRL 282 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--~~~~ 282 (358)
.....++..+......|+.+|.+.+.+++.++... ++.+..++|+.+.+|........ +...
T Consensus 132 ------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lr~~~vyGp~~~~~~~~~~i~~~ 195 (321)
T d1rpna_ 132 ------------QAERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLRGIEFVTRKVTDA 195 (321)
T ss_dssp ------------SSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTSCTTSHHHHHHHH
T ss_pred ------------cCCCCCCCCCccccChhHHHHHHHHHHHHHHHhhc----CCcEEEEEEecccCCCccccccHHHHHHH
Confidence 01122233455566789999999999988888775 78999999998888754332211 1111
Q ss_pred hcchhH----------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 283 LFPPFQ----------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 283 ~~~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
...... ....+.++.++|+|+++..++..+.
T Consensus 196 ~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~ 236 (321)
T d1rpna_ 196 VARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK 236 (321)
T ss_dssp HHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCC
Confidence 111000 0011236899999999999987654
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.71 E-value=5.9e-17 Score=152.01 Aligned_cols=238 Identities=13% Similarity=0.164 Sum_probs=154.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
+||||||+|.||++++++|++.|...|+++++...... ...+.+ ....++.++++|++|...+.++++.. ++|
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~-----~~d 75 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDI-SESNRYNFEHADICDSAEITRIFEQY-----QPD 75 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTT-TTCTTEEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhh-hhcCCcEEEEccCCCHHHHHHHHHhC-----CCC
Confidence 58999999999999999999999645666665321110 001111 12357899999999999999888754 699
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCC---CCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDY---PSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~---~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
+|||+|+..... .+.++....+++|+.|+..+.+++......... ...++|++||...+....... .
T Consensus 76 ~VihlAa~~~~~-----~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~-----~ 145 (361)
T d1kewa_ 76 AVMHLAAESHVD-----RSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPD-----E 145 (361)
T ss_dssp EEEECCSCCCHH-----HHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGG-----G
T ss_pred EEEECccccchh-----hHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCC-----c
Confidence 999999875321 123445678999999999999999887553210 024899999987653111000 0
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc-hh-hh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH-IP-LF 280 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~-~~-~~ 280 (358)
..+........+..+..+...|+.||.+.+.+++.++... |+.+.+++|+.|.+|....+. .+ +.
T Consensus 146 ---------~~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~----~i~~~~lR~~~vyGp~~~~~~~i~~~i 212 (361)
T d1kewa_ 146 ---------VENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHFPEKLIPLVI 212 (361)
T ss_dssp ---------SCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSHHHHHH
T ss_pred ---------cccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEecCceECcCCCcCcHHHHHH
Confidence 0000000011122344556789999999999999888765 899999999999998554322 11 11
Q ss_pred hhhc---c--hhH-HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 281 RLLF---P--PFQ-KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 281 ~~~~---~--~~~-~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.... + .+. ....+.++..+|+|+++..++....
T Consensus 213 ~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~ 251 (361)
T d1kewa_ 213 LNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK 251 (361)
T ss_dssp HHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCC
Confidence 1110 0 000 0011125799999999999997653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.71 E-value=3.1e-16 Score=144.96 Aligned_cols=228 Identities=13% Similarity=0.066 Sum_probs=152.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-----HHHHHHHHhc-CCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-----KAERAAKSAG-MAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-----~~~~~~~~~~-~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.|++|||||||.||+++++.|+++| +.|+.++|..+ ..+....... .....+.++.+|+++.+++...++..
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~- 78 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKG-YEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVI- 78 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHH-
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCc-CEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhh-
Confidence 3799999999999999999999999 69999998532 1111111111 12346889999999999999888754
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCC
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVP 198 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~ 198 (358)
++|+|||+|+..... ...+.....+.+|+.+...+..++......... ..++++.||..... ..
T Consensus 79 ----~~D~Vih~Aa~~~~~-----~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~~~~~~ss~~~~~-~~----- 142 (339)
T d1n7ha_ 79 ----KPDEVYNLAAQSHVA-----VSFEIPDYTADVVATGALRLLEAVRSHTIDSGR-TVKYYQAGSSEMFG-ST----- 142 (339)
T ss_dssp ----CCSEEEECCSCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCC-CCEEEEEEEGGGGT-TS-----
T ss_pred ----ccchhhhcccccccc-----ccccCccccccccccccchhhhhhhhccccccc-ceeeeecccceecc-cC-----
Confidence 799999999975331 133455678899999999999888766544321 13455555544321 10
Q ss_pred CCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh
Q 018331 199 PKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP 278 (358)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~ 278 (358)
....+|..+..+...|+.+|.+.+.++..+++.. ++.+..++|+.|.+|........
T Consensus 143 -------------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~~~~~~ 199 (339)
T d1n7ha_ 143 -------------------PPPQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRRGENFVT 199 (339)
T ss_dssp -------------------CSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCTTSHH
T ss_pred -------------------CCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh----CCCEEEEEEccccCCCCCCCCCc
Confidence 0112233455667889999999998888888775 89999999999988854332211
Q ss_pred --hhhhhcchhH----------HhhhcCccchhHHhhhhhhhhcCCC
Q 018331 279 --LFRLLFPPFQ----------KYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 279 --~~~~~~~~~~----------~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.......... ......++..+|+++++..++..+.
T Consensus 200 ~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~ 246 (339)
T d1n7ha_ 200 RKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK 246 (339)
T ss_dssp HHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS
T ss_pred chhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCC
Confidence 1111000000 0011125779999999999988764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.70 E-value=4.3e-16 Score=147.31 Aligned_cols=200 Identities=13% Similarity=0.087 Sum_probs=132.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH----------------HHHHHHHhc-CCCCceEEEEecCCCH
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK----------------AERAAKSAG-MAKENYTIMHLDLASL 107 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~----------------~~~~~~~~~-~~~~~i~~~~~Dl~~~ 107 (358)
|++||||||||.||.+++++|++.| +.|++++.-... ......... ..+.++.++++|++|.
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g-~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~ 79 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKN-YEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDF 79 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCc-CEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCH
Confidence 6889999999999999999999999 699988621100 111111111 1245789999999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+.++++++.. ++|+|||.|+..... ....+.+.....+.+|+.|+.+++.++...-.+ .++++.||..
T Consensus 80 ~~l~~~~~~~-----~~d~ViHlAa~~~~~--~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-----~~~i~~ss~~ 147 (393)
T d1i24a_ 80 EFLAESFKSF-----EPDSVVHFGEQRSAP--YSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEE-----CHLVKLGTMG 147 (393)
T ss_dssp HHHHHHHHHH-----CCSEEEECCSCCCHH--HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTT-----CEEEEECCGG
T ss_pred HHHHHHHHhh-----cchheeccccccccc--cccccccccccccccccccccHHHHHHHHhccc-----cceeeccccc
Confidence 9999998865 699999999875322 112355667788999999999999998766443 3677777665
Q ss_pred CCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
.+. .... +..-.+.... . .....++..+..+...|+.||.+.+.+++.++++. ++.+.+++|+.+
T Consensus 148 ~~~-~~~~--~~~~~~~~~~-------~-~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----~l~~~~lR~~~v 212 (393)
T d1i24a_ 148 EYG-TPNI--DIEEGYITIT-------H-NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVV 212 (393)
T ss_dssp GGC-CCSS--CBCSSEEEEE-------E-TTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccc-cccc--cccccccccc-------c-cccccccccccccccHHHHHhhhhccccccccccc----ceeeeecccccc
Confidence 432 1100 0000000000 0 00000011123345679999999999998887775 899999999999
Q ss_pred cCCcc
Q 018331 268 ATTGL 272 (358)
Q Consensus 268 ~t~~~ 272 (358)
.++..
T Consensus 213 ~G~~~ 217 (393)
T d1i24a_ 213 YGVKT 217 (393)
T ss_dssp ECSCC
T ss_pred cCCCc
Confidence 88743
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.70 E-value=1.3e-16 Score=148.41 Aligned_cols=186 Identities=16% Similarity=0.150 Sum_probs=129.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|+||||||+|.||++++++|+++| +.|+++++... ..+.....-.....++.++++|+++.++++.++... ++
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~-----~~ 75 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENG-YDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEY-----KI 75 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHS-----CC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCc-CeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhcc-----CC
Confidence 689999999999999999999999 59988875321 111111111112357899999999999988887643 69
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+|+..... ...+.....+.+|+.++..+..++..... .++|++||...+...... +
T Consensus 76 d~VihlAa~~~~~-----~~~~~~~~~~~~N~~~t~~ll~~~~~~~i------~~~i~~SS~~vyg~~~~~--~------ 136 (347)
T d1z45a2 76 DSVIHFAGLKAVG-----ESTQIPLRYYHNNILGTVVLLELMQQYNV------SKFVFSSSATVYGDATRF--P------ 136 (347)
T ss_dssp CEEEECCSCCCHH-----HHHHSHHHHHHHHHHHHHHHHHHHHHHTC------CEEEEEEEGGGGCCGGGS--T------
T ss_pred CEEEEcccccccc-----ccccCcccccccchhhhHHHHHHHHhccc------ceEEeecceeeecCcccC--C------
Confidence 9999999976321 12344467788999999999999865433 389999998866322110 0
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCC
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATT 270 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~ 270 (358)
...+.++..+..+...|+.||.+.+.+++.+.+. ...++.+..++|+.+.++
T Consensus 137 ------------~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~~~~~lR~~~v~g~ 188 (347)
T d1z45a2 137 ------------NMIPIPEECPLGPTNPYGHTKYAIENILNDLYNS--DKKSWKFAILRYFNPIGA 188 (347)
T ss_dssp ------------TCCSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHH--STTSCEEEEEEECEEECC
T ss_pred ------------CCCccccccCCCCCChhHhHHHHHHHHHHHHHHh--hccCCcEEEEeecceEee
Confidence 0111223334455678999999999998888765 345788888887766553
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.69 E-value=5.5e-16 Score=143.76 Aligned_cols=233 Identities=12% Similarity=0.037 Sum_probs=156.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh----HHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF----LKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~----~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+-|++|||||||.||++++++|.++| +.|+.++|.. ...+........ ...++.++.+|+.+.........
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~-- 90 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLD-QKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA-- 90 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCc-CEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc--
Confidence 356799999999999999999999999 6999987632 222222222111 13478999999999987665544
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNV 197 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~ 197 (358)
..+.++|.++..... ...+.....+.+|+.|+..+++++...-. .++|++||...+...
T Consensus 91 -----~~~~v~~~~a~~~~~-----~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~------~~~i~~SS~~vyg~~----- 149 (341)
T d1sb8a_ 91 -----GVDYVLHQAALGSVP-----RSINDPITSNATNIDGFLNMLIAARDAKV------QSFTYAASSSTYGDH----- 149 (341)
T ss_dssp -----TCSEEEECCSCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHTTC------SEEEEEEEGGGGTTC-----
T ss_pred -----ccccccccccccccc-----ccccCccchhheeehhHHHHHHHHHhcCC------ceEEEcccceeeCCC-----
Confidence 678899888765321 14566778899999999999998865422 499999998865311
Q ss_pred CCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch
Q 018331 198 PPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI 277 (358)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~ 277 (358)
...+.++..+..+...|+.+|.+.+.+++.+++.. ++++..++|+.+.++.......
T Consensus 150 -------------------~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~v~G~~~~~~~~ 206 (341)
T d1sb8a_ 150 -------------------PGLPKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQDPNGA 206 (341)
T ss_dssp -------------------CCSSBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTCCCCST
T ss_pred -------------------CCCCccCCCCCCCCCcchHHHHHHHHHHHHHHHHh----CCCeEEEEeceeeccCcCCCCc
Confidence 11122333445556789999999999999888775 7999999999988875433221
Q ss_pred --hhhhhh-cchhHH---------hhhcCccchhHHhhhhhhhhcCCCCCCCceeee
Q 018331 278 --PLFRLL-FPPFQK---------YITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWS 322 (358)
Q Consensus 278 --~~~~~~-~~~~~~---------~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~ 322 (358)
.+.... ...+.. ...+.++-++|++.++..++..+....++.|..
T Consensus 207 ~~~~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~~~~~~ 263 (341)
T d1sb8a_ 207 YAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNI 263 (341)
T ss_dssp TCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSEEEEE
T ss_pred hhhhHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccccceeeee
Confidence 111111 111100 011236788999999998886654333334433
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.2e-15 Score=141.41 Aligned_cols=234 Identities=12% Similarity=0.057 Sum_probs=154.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
+||||||||.||++++++|+++|.+.|+.+++......... ...++.++++|+++.+++.+.+.+ .+|+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~-----~~~~~~~i~~Di~~~~~~~~~~~~------~~d~ 70 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-----NHPHFHFVEGDISIHSEWIEYHVK------KCDV 70 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-----TCTTEEEEECCTTTCSHHHHHHHH------HCSE
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhc-----cCCCeEEEECccCChHHHHHHHHh------CCCc
Confidence 58999999999999999999999658998887643322111 246799999999988776553321 5899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+..... ...+.....+.+|+.|+..++.++... . .+.+++||...+....... +.
T Consensus 71 Vih~a~~~~~~-----~~~~~~~~~~~~nv~gt~~ll~~~~~~----~---~~~~~~ss~~~~~~~~~~~------~~-- 130 (342)
T d2blla1 71 VLPLVAIATPI-----EYTRNPLRVFELDFEENLRIIRYCVKY----R---KRIIFPSTSEVYGMCSDKY------FD-- 130 (342)
T ss_dssp EEECBCCCCHH-----HHHHSHHHHHHHHTHHHHHHHHHHHHT----T---CEEEEECCGGGGBTCCCSS------BC--
T ss_pred ccccccccccc-----ccccCCccccccccccccccccccccc----c---ccccccccccccccccccc------cc--
Confidence 99999976332 123444577899999999999987443 1 4777887766553221100 00
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh------hh
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP------LF 280 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~------~~ 280 (358)
.......+.....+...|+.||.+.+.+++.+++.. |+.+..++|..+.++........ ..
T Consensus 131 ---------~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~i~r~~~~~g~~~~~~~~~~~~~~~~~ 197 (342)
T d2blla1 131 ---------EDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLDNLNAARIGSSRAI 197 (342)
T ss_dssp ---------TTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSCCCTTCSBSCBCHHH
T ss_pred ---------cccccccccccCCCcchhhhcccchhhhhhhhhccc----CceeEEeeccccccccccccccccccccccc
Confidence 000111122233556789999999999999888876 89999999998888744332111 01
Q ss_pred hhh-cchhH---------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 281 RLL-FPPFQ---------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 281 ~~~-~~~~~---------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
..+ ..... ....+.++..+|+++++..++..+.....|..+...
T Consensus 198 ~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig 251 (342)
T d2blla1 198 TQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG 251 (342)
T ss_dssp HHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEEC
T ss_pred hHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccccCCCeEEEEe
Confidence 100 01000 011123789999999999999876555567777664
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=1.6e-15 Score=130.66 Aligned_cols=193 Identities=13% Similarity=0.136 Sum_probs=128.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+..|+|+||||||+||++++++|+++| +.|.++.|+.+++.. ....++.++.+|+++.+++.++++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g-~~V~~~~R~~~~~~~------~~~~~~~~~~gD~~d~~~l~~al~------- 66 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAG-YEVTVLVRDSSRLPS------EGPRPAHVVVGDVLQAADVDKTVA------- 66 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTT-CEEEEEESCGGGSCS------SSCCCSEEEESCTTSHHHHHHHHT-------
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEEcChhhccc------ccccccccccccccchhhHHHHhc-------
Confidence 356789999999999999999999999 699999999766421 123568999999999998877765
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
..|+||+++|...... . ..++..+...+++++ ++.+ -.++|++||.......
T Consensus 67 ~~d~vi~~~g~~~~~~------~------~~~~~~~~~~l~~aa----~~~~--v~r~i~~ss~~~~~~~---------- 118 (205)
T d1hdoa_ 67 GQDAVIVLLGTRNDLS------P------TTVMSEGARNIVAAM----KAHG--VDKVVACTSAFLLWDP---------- 118 (205)
T ss_dssp TCSEEEECCCCTTCCS------C------CCHHHHHHHHHHHHH----HHHT--CCEEEEECCGGGTSCT----------
T ss_pred CCCEEEEEeccCCchh------h------hhhhHHHHHHHHHHH----HhcC--CCeEEEEeeeeccCCC----------
Confidence 6899999999753221 1 123444555555544 4333 2599999987654210
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
....+....|...|.+.+.+. ...|+....|+||.+......... ..
T Consensus 119 ---------------------~~~~~~~~~~~~~~~~~e~~l--------~~~~~~~tiirp~~~~~~~~~~~~-~~--- 165 (205)
T d1hdoa_ 119 ---------------------TKVPPRLQAVTDDHIRMHKVL--------RESGLKYVAVMPPHIGDQPLTGAY-TV--- 165 (205)
T ss_dssp ---------------------TCSCGGGHHHHHHHHHHHHHH--------HHTCSEEEEECCSEEECCCCCSCC-EE---
T ss_pred ---------------------ccccccccccchHHHHHHHHH--------HhcCCceEEEecceecCCCCcccE-EE---
Confidence 011233445666666543322 335899999999998653221111 00
Q ss_pred hcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 283 LFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.........+++.+|+|+.++.++.+++
T Consensus 166 ---~~~~~~~~~~i~~~DvA~~~~~~l~~~~ 193 (205)
T d1hdoa_ 166 ---TLDGRGPSRVISKHDLGHFMLRCLTTDE 193 (205)
T ss_dssp ---ESSSCSSCSEEEHHHHHHHHHHTTSCST
T ss_pred ---eeCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 0011112346899999999999998765
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.1e-15 Score=138.41 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=138.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH-HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFL-KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~-~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
|+||||||+|.||++++++|+++| +.|++++|... ..+... .. ....++.....|+.+. .+.++
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g-~~V~~~d~~~~~~~~~~~-~~-~~~~~~d~~~~~~~~~------------~~~~~ 66 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDG-HEVTVVDNFFTGRKRNVE-HW-IGHENFELINHDVVEP------------LYIEV 66 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCSSCCGGGTG-GG-TTCTTEEEEECCTTSC------------CCCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCc-CEEEEEeCCCcCCHHHHH-Hh-cCCCceEEEehHHHHH------------HHcCC
Confidence 789999999999999999999999 69999886321 111111 11 1123455555555321 23479
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|+|||+|+...... ..++..+.+++|+.++..+++++... . .++|++||...+. ..... | ..
T Consensus 67 d~VihlAa~~~~~~-----~~~~~~~~~~~Nv~g~~~ll~~~~~~----~---~k~I~~SS~~vy~-~~~~~-~----~~ 128 (312)
T d2b69a1 67 DQIYHLASPASPPN-----YMYNPIKTLKTNTIGTLNMLGLAKRV----G---ARLLLASTSEVYG-DPEVH-P----QS 128 (312)
T ss_dssp SEEEECCSCCSHHH-----HTTCHHHHHHHHHHHHHHHHHHHHHH----T---CEEEEEEEGGGGB-SCSSS-S----BC
T ss_pred CEEEECcccCCchh-----HHhCHHHHHHHHHHHHHHHHHHHHHc----C---CcEEEEEChheec-CCCCC-C----CC
Confidence 99999999753211 12344667889999999999887543 2 4899999976542 11110 0 00
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhhc
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLLF 284 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~~ 284 (358)
.....+..+..+...|+.||.+.+.+++.+++.. |+.+.+++|+.|.+|........+...+.
T Consensus 129 -------------e~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~~~i~~~i 191 (312)
T d2b69a1 129 -------------EDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRMHMNDGRVVSNFI 191 (312)
T ss_dssp -------------TTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTCCTTCCCHHHHHH
T ss_pred -------------ccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHh----CCcEEEEEeeeEECCCCCCCCccHHHHHH
Confidence 0001122344566789999999999999888775 89999999999999865443222211111
Q ss_pred -chhH---------HhhhcCccchhHHhhhhhhhhcCC
Q 018331 285 -PPFQ---------KYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 285 -~~~~---------~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.... ....+.++..+|++++++.++...
T Consensus 192 ~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~ 229 (312)
T d2b69a1 192 LQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSN 229 (312)
T ss_dssp HHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSS
T ss_pred HHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhc
Confidence 1110 001123678999999999888654
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.63 E-value=1.2e-15 Score=141.90 Aligned_cols=240 Identities=12% Similarity=0.104 Sum_probs=150.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC--h-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRD--F-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~--~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
-|.||||||||.||.+++.+|+++|. .|.++.++ . .........+ .+.++.++.+|++|.+.+..++.
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~-~v~v~~~d~~~~~~~~~~~~~~--~~~~i~~~~~Di~d~~~~~~~~~------ 72 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHP-DVHVTVLDKLTYAGNKANLEAI--LGDRVELVVGDIADAELVDKLAA------ 72 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCT-TCEEEEEECCCTTCCGGGTGGG--CSSSEEEEECCTTCHHHHHHHHT------
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCC-CeEEEEEeCCCccccHHHHHHh--hcCCeEEEEccCCCHHHHHHHHh------
Confidence 46799999999999999999999994 44443332 1 1000000111 24689999999999998888765
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
..|.++|.|+..... ....+....+++|+.|+.+++..+.... .++|++||...+.+.+... ..
T Consensus 73 -~~~~v~~~a~~~~~~-----~~~~~~~~~~~~N~~g~~nll~~~~~~~-------~k~i~~ss~~vyg~~~~~~-~~-- 136 (346)
T d1oc2a_ 73 -KADAIVHYAAESHND-----NSLNDPSPFIHTNFIGTYTLLEAARKYD-------IRFHHVSTDEVYGDLPLRE-DL-- 136 (346)
T ss_dssp -TCSEEEECCSCCCHH-----HHHHCCHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGGCCBCCGG-GS--
T ss_pred -hhhhhhhhhhccccc-----chhhCcccceeeehHhHHhhhhhhcccc-------ccccccccceEecccCccc-cc--
Confidence 678899999876332 1224456778999999999988775442 3788887776542111000 00
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhh
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFR 281 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~ 281 (358)
+ -..........+..+..+...|+.+|.+.+.+++.+.++. |+++.+++|+.+.+|....... +..
T Consensus 137 -~--------~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~vyGp~~~~~~~-~~~ 202 (346)
T d1oc2a_ 137 -P--------GHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQHIEKF-IPR 202 (346)
T ss_dssp -T--------TTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTCCTTSH-HHH
T ss_pred -c--------ccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeecceeCCCCCccch-hHH
Confidence 0 0000111222333344556789999999999998888775 8999999999999874322111 111
Q ss_pred hhcc--------hh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 282 LLFP--------PF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 282 ~~~~--------~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.... .+ .....+.++..+|++++++.++..+.. ++.|....+
T Consensus 203 ~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~--~~~~~~~~~ 253 (346)
T d1oc2a_ 203 QITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRM--GETYLIGAD 253 (346)
T ss_dssp HHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCT--TCEEEECCS
T ss_pred HHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhccc--Ccccccccc
Confidence 1110 10 011112368899999999988876543 555554333
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.63 E-value=2.8e-15 Score=139.32 Aligned_cols=230 Identities=15% Similarity=0.100 Sum_probs=153.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
++||+||||||||.||.++++.|+++| +.|+.++|+........+.. ....++.++.+|++|.+.+.++++..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g-~~V~~~~r~~~~~~~~~~~~-~~~~~i~~~~~Dl~d~~~l~~~~~~~----- 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMG-ATVKGYSLTAPTVPSLFETA-RVADGMQSEIGDIRDQNKLLESIREF----- 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCSSSSCHHHHT-TTTTTSEEEECCTTCHHHHHHHHHHH-----
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCccHHHHhhh-hcccCCeEEEeeccChHhhhhhhhhc-----
Confidence 689999999999999999999999999 69999999865443333322 22357999999999999998887755
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
.+|+++|+|+..... ...+..+..+.+|+.++..++.++...-.. .++++.||..... ....
T Consensus 79 ~~~~v~~~aa~~~~~-----~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~-----~~~~~~s~~~~~~-~~~~------- 140 (356)
T d1rkxa_ 79 QPEIVFHMAAQPLVR-----LSYSEPVETYSTNVMGTVYLLEAIRHVGGV-----KAVVNITSDKCYD-NKEW------- 140 (356)
T ss_dssp CCSEEEECCSCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHHCCC-----CEEEEECCGGGBC-CCCS-------
T ss_pred hhhhhhhhhcccccc-----ccccCCccccccccccchhhhhhhhccccc-----ccccccccccccc-cccc-------
Confidence 689999999875321 134556778899999999999988754322 2455555443331 1000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcc-----cCCcEEEEecCCcccCCccccc--
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHE-----ETGIAFASLYPGCIATTGLFRE-- 275 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~-----~~gI~v~~v~PG~v~t~~~~~~-- 275 (358)
..+..+..+..+...|+.+|.+.+.+++.++.++.. ..++.+..+.|+.+.+|.....
T Consensus 141 ---------------~~~~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~~~ 205 (356)
T d1rkxa_ 141 ---------------IWGYRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWALDR 205 (356)
T ss_dssp ---------------SSCBCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCSSC
T ss_pred ---------------ccccccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchhhH
Confidence 011122234455678999999999888888776521 3578999999999888753221
Q ss_pred chhh-hhhhcc--h---hHHhhhcCccchhHHhhhhhhhhcCC
Q 018331 276 HIPL-FRLLFP--P---FQKYITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 276 ~~~~-~~~~~~--~---~~~~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
..+. ...... . ........++..+|++.++..++..+
T Consensus 206 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~a~~~~~~~~ 248 (356)
T d1rkxa_ 206 IVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKL 248 (356)
T ss_dssp HHHHHHHHHHTTCCEECSCTTCEECCEETHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEeeccccccccccccccchhhhhhhhh
Confidence 1110 000000 0 00111123567889999988777643
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.6e-15 Score=139.36 Aligned_cols=234 Identities=11% Similarity=-0.005 Sum_probs=148.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC------h----HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRD------F----LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~------~----~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
|+||||||+|.||.+++++|+++| +.|+.+++. . ...+.. ..+ ...++.++++|++|.+.+.+++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g-~~V~~ld~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~Dl~d~~~l~~~~~ 78 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAG-YLPVVIDNFHNAFRGGGSLPESLRRV-QEL--TGRSVEFEEMDILDQGALQRLFK 78 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTT-CCEEEEECSSSSCBCSSSSBHHHHHH-HHH--HTCCCEEEECCTTCHHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCccccccccchHHHHHH-HHh--cCCCcEEEEeecccccccccccc
Confidence 579999999999999999999999 688887641 1 112221 222 24678999999999999888876
Q ss_pred HHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCC
Q 018331 116 TFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAG 195 (358)
Q Consensus 116 ~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~ 195 (358)
. ..+|+++|+|+..... ...+.....+++|+.++..+..++...-. .+++++||...+......
T Consensus 79 ~-----~~~~~i~h~Aa~~~~~-----~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v------~~~i~~ss~~~~~~~~~~ 142 (346)
T d1ek6a_ 79 K-----YSFMAVIHFAGLKAVG-----ESVQKPLDYYRVNLTGTIQLLEIMKAHGV------KNLVFSSSATVYGNPQYL 142 (346)
T ss_dssp H-----CCEEEEEECCSCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGGGGCSCSSS
T ss_pred c-----cccccccccccccCcH-----hhHhCHHHHHHhhhcccccccchhhhcCc------ccccccccceeeeccccc
Confidence 4 2688999999975321 12334567789999999998888754322 388998887655311000
Q ss_pred CCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCccccc
Q 018331 196 NVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFRE 275 (358)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~ 275 (358)
....+.........|+.+|.+.+...+.+++. ..++....++|+.+.++.....
T Consensus 143 -----------------------~~~~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~---~~~~~~~~lR~~~v~G~~~~~~ 196 (346)
T d1ek6a_ 143 -----------------------PLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA---DKTWNAVLLRYFNPTGAHASGC 196 (346)
T ss_dssp -----------------------SBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEECEEECCCTTSS
T ss_pred -----------------------cccccccccccCChHHHHHHHHHHHHHHHHHh---ccCCceEEEeecceeccCCCCC
Confidence 00001112233457999999988888877654 2588889999988877632111
Q ss_pred ch--------hhhhhhcchhH-----------------HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCC
Q 018331 276 HI--------PLFRLLFPPFQ-----------------KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNK 325 (358)
Q Consensus 276 ~~--------~~~~~~~~~~~-----------------~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~ 325 (358)
.. .+......... ....+.++.++|+|..+..++........++.+...+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~ 271 (346)
T d1ek6a_ 197 IGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGT 271 (346)
T ss_dssp CCCCCSSSCCSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred cCccccccHHHHHHHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCC
Confidence 10 00100000000 0001236889999998888765544444555555444
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.63 E-value=3.8e-15 Score=136.26 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=139.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.|.||||||||.||+++++.|+++| +.|+++++.. ++|+.+.+.+.++++.- .+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g-~~vi~~~~~~--------------------~~~~~~~~~~~~~~~~~-----~~ 55 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRG-DVELVLRTRD--------------------ELNLLDSRAVHDFFASE-----RI 55 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCT-TEEEECCCTT--------------------TCCTTCHHHHHHHHHHH-----CC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCc-CEEEEecCch--------------------hccccCHHHHHHHHhhc-----CC
Confidence 4579999999999999999999999 5777665432 16899999988887642 68
Q ss_pred cEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcc
Q 018331 125 DVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLG 204 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~ 204 (358)
|.++|+|+..... ..........+.+|+.++..++.++..+-. .++|++||.+.+.... ...+.
T Consensus 56 d~v~~~a~~~~~~----~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v------~~~i~~SS~~vyg~~~------~~~~~ 119 (315)
T d1e6ua_ 56 DQVYLAAAKVGGI----VANNTYPADFIYQNMMIESNIIHAAHQNDV------NKLLFLGSSCIYPKLA------KQPMA 119 (315)
T ss_dssp SEEEECCCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEECCGGGSCTTC------CSSBC
T ss_pred CEEEEcchhcccc----ccchhhHHHHHHHHHHHHHHHHHHHHHcCC------CEEEEECCceEcCCCC------CCCcc
Confidence 9999999775321 113345566688999999999988865432 3899999988653110 00000
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchh--hhhh
Q 018331 205 DLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIP--LFRL 282 (358)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~--~~~~ 282 (358)
+ ....+..+.+....|+.||.+.+.+++.+.++. |+++.+++|+.|.+|........ ....
T Consensus 120 E-------------~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyGp~~~~~~~~~~~~~~ 182 (315)
T d1e6ua_ 120 E-------------SELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHDNFHPSNSHVIPA 182 (315)
T ss_dssp G-------------GGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTCCCCTTCSSHHHH
T ss_pred C-------------CccccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCCCCCcccccccee
Confidence 0 001111233456689999999999999998775 89999999999998743221110 0000
Q ss_pred hc-chhH-H-------------hhhcCccchhHHhhhhhhhhcCC
Q 018331 283 LF-PPFQ-K-------------YITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 283 ~~-~~~~-~-------------~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
.. .... . .....++..++++.++..++...
T Consensus 183 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~ 227 (315)
T d1e6ua_ 183 LLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELA 227 (315)
T ss_dssp HHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSC
T ss_pred eeccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhc
Confidence 00 0000 0 11234578899999998887443
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.63 E-value=5.6e-15 Score=135.83 Aligned_cols=247 Identities=15% Similarity=0.080 Sum_probs=145.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh-HHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDF-LKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~-~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.||||||+|.||+++++.|+++| +.|+.+++-. .........+. ...++.++.+|+++.+++.++++.. ++|
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g-~~V~~id~~~~~~~~~~~~~~~-~~~~~~~i~~Di~~~~~l~~~~~~~-----~~d 74 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQG-IDLIVFDNLSRKGATDNLHWLS-SLGNFEFVHGDIRNKNDVTRLITKY-----MPD 74 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-CEEEEEECCCSTTHHHHHHHHH-TTCCCEEEECCTTCHHHHHHHHHHH-----CCS
T ss_pred EEEEECCCcHHHHHHHHHHHHCc-CEEEEEECCCcccchhHHHHhh-ccCCcEEEEcccCCHHHHHHHHHhc-----CCc
Confidence 58999999999999999999999 6998886421 11111122222 2357899999999999999988765 689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCccc
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGD 205 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~ 205 (358)
+|||+|+..... ...++....+++|+.|+.++++++...-. .+.+++||...........+....+...
T Consensus 75 ~Vih~aa~~~~~-----~~~~~~~~~~~~Nv~gt~nll~~~~~~~~------~~~i~~sS~~~~~~~~~~~~~~~~~~~~ 143 (338)
T d1orra_ 75 SCFHLAGQVAMT-----TSIDNPCMDFEINVGGTLNLLEAVRQYNS------NCNIIYSSTNKVYGDLEQYKYNETETRY 143 (338)
T ss_dssp EEEECCCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHHHCT------TCEEEEEEEGGGGTTCTTSCEEECSSCE
T ss_pred eEEeeccccccc-----ccccChHHHHHHHHHHHHHHHHhhhcccc------cccccccccccccccccccccccccccc
Confidence 999999986331 12345578899999999999998866533 2555555554443221111100000000
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc----h-hhh
Q 018331 206 LRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH----I-PLF 280 (358)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~----~-~~~ 280 (358)
-............+..+...|+.+|...+.+.....+.+ ++....+.|..+..+...... . .+.
T Consensus 144 -------~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (338)
T d1orra_ 144 -------TCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSMYGGRQFATYDQGWVGWFC 212 (338)
T ss_dssp -------EETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTCCCBTTBCHHHHHH
T ss_pred -------cccccccCcccCCccccccccccccchhhhhhhhhhhcc----Ccccccccccceeeccccccccccccchhh
Confidence 000001112233345567899999999999888888776 444444444333322111111 0 111
Q ss_pred hhhcc-------hhH----HhhhcCccchhHHhhhhhhhhcCCCCCCCceeeec
Q 018331 281 RLLFP-------PFQ----KYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSW 323 (358)
Q Consensus 281 ~~~~~-------~~~----~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~ 323 (358)
..... .+. ....+.++..+|++++++.++..... ..|..+..
T Consensus 213 ~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~-~~~~~~~i 265 (338)
T d1orra_ 213 QKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSK-IRGNAFNI 265 (338)
T ss_dssp HHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHH-HTTCEEEE
T ss_pred HHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhcccc-ccCccccc
Confidence 11000 000 00112256789999999998865432 34444443
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.62 E-value=1.5e-15 Score=139.68 Aligned_cols=221 Identities=18% Similarity=0.169 Sum_probs=147.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-----cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-----WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-----~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+||||||+|.||+++++.|+++|. .+|+..+..................++.++.+|.++.........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~------ 75 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELR------ 75 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTT------
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhcccc------
Confidence 589999999999999999999982 134444432111000000011234679999999999987665433
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKA 201 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~ 201 (358)
..|.|+|+|+..... ......+..+++|+.++..+++++...-. .++|++||...+....
T Consensus 76 -~~d~vi~~a~~~~~~-----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~------~~~I~~Ss~~~yg~~~-------- 135 (322)
T d1r6da_ 76 -GVDAIVHFAAESHVD-----RSIAGASVFTETNVQGTQTLLQCAVDAGV------GRVVHVSTNQVYGSID-------- 135 (322)
T ss_dssp -TCCEEEECCSCCCHH-----HHHHCCHHHHHHHTHHHHHHHHHHHHTTC------CEEEEEEEGGGGCCCS--------
T ss_pred -ccceEEeeccccccc-----ccccchHHHhhhhHHHHHHHHHHHHHcCC------ceEEEeecceeecCCC--------
Confidence 789999999875332 23456677889999999999998864321 4899999987663110
Q ss_pred CccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-h-h
Q 018331 202 NLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-P-L 279 (358)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-~-~ 279 (358)
..+.++..+..+...|+.+|.+.+.+++.++++. |+.+..++|+.+.+|....+.. + +
T Consensus 136 ----------------~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~~~~~~i~~~ 195 (322)
T d1r6da_ 136 ----------------SGSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQHPEKLIPLF 195 (322)
T ss_dssp ----------------SSCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCCTTSHHHHH
T ss_pred ----------------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEECcCCCcCcHHHHH
Confidence 1122333455556789999999999999998775 8999999999999985433221 1 1
Q ss_pred hhhhc-----chhHH-hhhcCccchhHHhhhhhhhhcCCC
Q 018331 280 FRLLF-----PPFQK-YITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 280 ~~~~~-----~~~~~-~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
..... ..+.. ...+.++..+|+|+++..++..+.
T Consensus 196 i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~ 235 (322)
T d1r6da_ 196 VTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR 235 (322)
T ss_dssp HHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCC
Confidence 11100 01100 011236799999999999998764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.62 E-value=4.5e-15 Score=138.59 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=147.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++..||||||+|.||.+++++|+++| +.|+.+++..... .........+..+|+.+.+.+.++++ .
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g-~~V~~~d~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~-------~ 79 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEG-HYVIASDWKKNEH------MTEDMFCDEFHLVDLRVMENCLKVTE-------G 79 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTT-CEEEEEESSCCSS------SCGGGTCSEEEECCTTSHHHHHHHHT-------T
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCc-CEEEEEeCCCccc------hhhhcccCcEEEeechhHHHHHHHhh-------c
Confidence 56679999999999999999999999 6999987753221 00111345788899999987766554 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|+|||+|+...... ...+.....+.+|+.++..++.++..... .++|++||...+....... ....
T Consensus 80 ~d~Vih~a~~~~~~~----~~~~~~~~~~~~n~~gt~~ll~~~~~~~v------k~~i~~SS~~~~~~~~~~~-~~~~-- 146 (363)
T d2c5aa1 80 VDHVFNLAADMGGMG----FIQSNHSVIMYNNTMISFNMIEAARINGI------KRFFYASSACIYPEFKQLE-TTNV-- 146 (363)
T ss_dssp CSEEEECCCCCCCHH----HHTTCHHHHHHHHHHHHHHHHHHHHHTTC------SEEEEEEEGGGSCGGGSSS-SSSC--
T ss_pred CCeEeeccccccccc----ccccccccccccccchhhHHHHhHHhhCc------ccccccccccccccccccc-cccc--
Confidence 899999998764321 12345677788999999999988865533 3899999987653221110 0000
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh---h
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL---F 280 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~---~ 280 (358)
.....+..+..+...|+.+|.+.+.+++.+.++. |+.+..++|+.+.++......... .
T Consensus 147 --------------~~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyG~~~~~~~~~~~~~~ 208 (363)
T d2c5aa1 147 --------------SLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFGTWKGGREKAPA 208 (363)
T ss_dssp --------------EECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSCCSSSCCCHHH
T ss_pred --------------ccccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEeccCCccccccccccc
Confidence 0000111233456689999999999998888775 899999999999987432211110 0
Q ss_pred hhhcchhH---H-------hhhcCccchhHHhhhhhhhhcCC
Q 018331 281 RLLFPPFQ---K-------YITKGYVSEDEAGKRLAQVVSDP 312 (358)
Q Consensus 281 ~~~~~~~~---~-------~~~~~~~~~~~~a~~i~~l~~~~ 312 (358)
........ . ...+.++..+|++.++..++...
T Consensus 209 ~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~ 250 (363)
T d2c5aa1 209 AFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD 250 (363)
T ss_dssp HHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS
T ss_pred ccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCC
Confidence 00000000 0 01223678899999999988654
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.9e-15 Score=132.80 Aligned_cols=206 Identities=17% Similarity=0.132 Sum_probs=135.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+++|+||||||||.||++++++|+++|. .+|++++|++..... ....++....+|+.+.+++...
T Consensus 11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~------~~~~~i~~~~~D~~~~~~~~~~------- 77 (232)
T d2bkaa1 11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE------EAYKNVNQEVVDFEKLDDYASA------- 77 (232)
T ss_dssp HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS------GGGGGCEEEECCGGGGGGGGGG-------
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc------cccceeeeeeeccccccccccc-------
Confidence 46789999999999999999999999994 279999997532111 1124577777888876654433
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
+...|++|||+|... ..........+|+.++..+++.+...- -.++|++|+.....
T Consensus 78 ~~~~d~vi~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~------v~~fi~~Ss~~~~~---------- 133 (232)
T d2bkaa1 78 FQGHDVGFCCLGTTR--------GKAGAEGFVRVDRDYVLKSAELAKAGG------CKHFNLLSSKGADK---------- 133 (232)
T ss_dssp GSSCSEEEECCCCCH--------HHHHHHHHHHHHTHHHHHHHHHHHHTT------CCEEEEECCTTCCT----------
T ss_pred ccccccccccccccc--------cccchhhhhhhcccccceeeecccccC------ccccccCCcccccc----------
Confidence 347999999998641 234455667889999999888875432 14899999987652
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc-EEEEecCCcccCCcccccchh-
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIP- 278 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI-~v~~v~PG~v~t~~~~~~~~~- 278 (358)
.....|+.+|...+...+ ++ +. ++..++||.+.++........
T Consensus 134 ---------------------------~~~~~Y~~~K~~~E~~l~----~~----~~~~~~IlRP~~i~G~~~~~~~~~~ 178 (232)
T d2bkaa1 134 ---------------------------SSNFLYLQVKGEVEAKVE----EL----KFDRYSVFRPGVLLCDRQESRPGEW 178 (232)
T ss_dssp ---------------------------TCSSHHHHHHHHHHHHHH----TT----CCSEEEEEECCEEECTTGGGSHHHH
T ss_pred ---------------------------CccchhHHHHHHhhhccc----cc----cccceEEecCceeecCCCcCcHHHH
Confidence 123459999988554432 22 33 577899999988743322111
Q ss_pred hhhhhcchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceee
Q 018331 279 LFRLLFPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYW 321 (358)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~ 321 (358)
+.......+ ........++++|+|++++.++..+.. ++.++
T Consensus 179 ~~~~~~~~~~~~~~~~~~I~~~dvA~a~i~~~~~~~~--~~~~i 220 (232)
T d2bkaa1 179 LVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRD--KQMEL 220 (232)
T ss_dssp HHHHHHCSCCTTGGGGTEEEHHHHHHHHHHHHTSCCC--SSEEE
T ss_pred HHHHHhhccCCcccCCCeEEHHHHHHHHHHHHhcCcc--CCeEE
Confidence 111111111 111222357889999999998876643 44443
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.57 E-value=5.6e-14 Score=132.10 Aligned_cols=192 Identities=16% Similarity=0.115 Sum_probs=131.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHh-CCCcEEEEEec---C------hHHHHHHHHHh---cC-----CCCceEEEEecCCCH
Q 018331 46 GSVIITGASSGLGLATAKALAE-TGKWHIIMACR---D------FLKAERAAKSA---GM-----AKENYTIMHLDLASL 107 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~-~Ga~~Vi~~~r---~------~~~~~~~~~~~---~~-----~~~~i~~~~~Dl~~~ 107 (358)
..||||||+|.||++++++|++ .| +.|+++++ + ....+.....+ .. ...++.++.+|++|.
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~-~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTN-HSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCC-CEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCC-CEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 3699999999999999999986 56 69998863 1 11112222221 11 134688999999999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 108 DSVRQFVDTFRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 108 ~~i~~~~~~~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+.++++++. .+++|+|||+|+...... ..+.....+.+|+.++..++.++..... .++++++|..
T Consensus 82 ~~l~~~~~~----~~~~d~ViH~Aa~~~~~~-----~~~~~~~~~~~N~~~t~~~l~~~~~~~~------~~~~~~~s~~ 146 (383)
T d1gy8a_ 82 DFLNGVFTR----HGPIDAVVHMCAFLAVGE-----SVRDPLKYYDNNVVGILRLLQAMLLHKC------DKIIFSSSAA 146 (383)
T ss_dssp HHHHHHHHH----SCCCCEEEECCCCCCHHH-----HHHCHHHHHHHHHHHHHHHHHHHHHTTC------CEEEEEEEGG
T ss_pred HHhhhhhhc----cceeehhhcccccccccc-----cccccccccccccccccccchhhhccCC------cccccccccc
Confidence 988877764 347899999999864321 2344567788999999999988865432 3777777766
Q ss_pred CCCCCcCCCCCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcc
Q 018331 188 GNTNTLAGNVPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCI 267 (358)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v 267 (358)
.+........+ ....+..+..+..+...|+.+|.+.+.+++.+...+ |+.+.+++|+.+
T Consensus 147 ~~~~~~~~~~~-----------------~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gl~~~~lR~~~v 205 (383)
T d1gy8a_ 147 IFGNPTMGSVS-----------------TNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNA 205 (383)
T ss_dssp GTBSCCC----------------------CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEE
T ss_pred ccccccccccc-----------------ccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh----CCCEEEEeccee
Confidence 55322111111 011222333455667889999999999998887765 899999999999
Q ss_pred cCCcccc
Q 018331 268 ATTGLFR 274 (358)
Q Consensus 268 ~t~~~~~ 274 (358)
.++....
T Consensus 206 yG~~~~~ 212 (383)
T d1gy8a_ 206 CGAHEDG 212 (383)
T ss_dssp ECCCTTS
T ss_pred eccCccc
Confidence 8876543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.57 E-value=5.8e-14 Score=122.11 Aligned_cols=216 Identities=15% Similarity=0.100 Sum_probs=135.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|||||||||+||+++++.|+++|. ..|+...|+.++.... ..++.++.+|+++.+++.++++ .+
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-------~~~~~~~~~d~~~~~~~~~~~~-------~~ 69 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------GGEADVFIGDITDADSINPAFQ-------GI 69 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------TCCTTEEECCTTSHHHHHHHHT-------TC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-------cCCcEEEEeeeccccccccccc-------cc
Confidence 5899999999999999999999994 2566678887554332 2468899999999999887765 68
Q ss_pred cEEEEcccccCCCCCC--------CCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCC
Q 018331 125 DVLVCNAAVYLPTAKE--------PTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGN 196 (358)
Q Consensus 125 D~lv~~ag~~~~~~~~--------~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~ 196 (358)
|.|||+++........ .......+.....+|+.++..+......... +...+.++.......
T Consensus 70 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~~~---- 139 (252)
T d2q46a1 70 DALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGV------KHIVVVGSMGGTNPD---- 139 (252)
T ss_dssp SEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTC------SEEEEEEETTTTCTT----
T ss_pred eeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccc------cccccccccccCCCC----
Confidence 9999999875321110 0112233556677888888887766654432 477777776544200
Q ss_pred CCCCCCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccc
Q 018331 197 VPPKANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREH 276 (358)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~ 276 (358)
. .........|...+.+ ...+.. ..|+.+..++||.+.++......
T Consensus 140 ---~-----------------------~~~~~~~~~~~~~~~~----~~~~~~----~~~~~~~ilRp~~v~g~~~~~~~ 185 (252)
T d2q46a1 140 ---H-----------------------PLNKLGNGNILVWKRK----AEQYLA----DSGTPYTIIRAGGLLDKEGGVRE 185 (252)
T ss_dssp ---C-----------------------GGGGGGGCCHHHHHHH----HHHHHH----HSSSCEEEEEECEEECSCTTSSC
T ss_pred ---c-----------------------ccccccccchhhhhhh----hhhhhh----cccccceeecceEEECCCcchhh
Confidence 0 0001112223333332 233332 35899999999999887432111
Q ss_pred hhhhhhhcchhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 277 IPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
..... ..........+++++|+|++++.++.++.. .|+.+...
T Consensus 186 -~~~~~--~~~~~~~~~~~i~~~Dva~a~~~~l~~~~~--~g~~~~i~ 228 (252)
T d2q46a1 186 -LLVGK--DDELLQTDTKTVPRADVAEVCIQALLFEEA--KNKAFDLG 228 (252)
T ss_dssp -EEEES--TTGGGGSSCCEEEHHHHHHHHHHHTTCGGG--TTEEEEEE
T ss_pred -hhhcc--CcccccCCCCeEEHHHHHHHHHHHhCCccc--cCcEEEEe
Confidence 00000 001111223478899999999999987754 56666543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.38 E-value=1.5e-12 Score=111.99 Aligned_cols=190 Identities=11% Similarity=0.095 Sum_probs=118.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCc-EEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKW-HIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~-~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|++|||||||.||++++++|+++|.+ .|+...|+... ...+ +..+..+..++. ....+.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~----------~~~~---~~~~~~d~~~~~------~~~~~~ 62 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA----------EHPR---LDNPVGPLAELL------PQLDGS 62 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC----------CCTT---EECCBSCHHHHG------GGCCSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh----------hccc---ccccccchhhhh------hccccc
Confidence 478999999999999999999999942 67777775311 1122 334455543321 123457
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+|.+|+++|..... ...-+...++|+.++..+++++... + -.+++++||..+..
T Consensus 63 ~d~vi~~~g~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~~----~--v~~~i~~Ss~~~~~------------- 116 (212)
T d2a35a1 63 IDTAFCCLGTTIKE-------AGSEEAFRAVDFDLPLAVGKRALEM----G--ARHYLVVSALGADA------------- 116 (212)
T ss_dssp CSEEEECCCCCHHH-------HSSHHHHHHHHTHHHHHHHHHHHHT----T--CCEEEEECCTTCCT-------------
T ss_pred hheeeeeeeeeccc-------cccccccccchhhhhhhcccccccc----c--cccccccccccccc-------------
Confidence 89999999865221 1223466788999999888877432 2 25899999877652
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCc-EEEEecCCcccCCcccccchhhh-h
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGI-AFASLYPGCIATTGLFREHIPLF-R 281 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI-~v~~v~PG~v~t~~~~~~~~~~~-~ 281 (358)
.....|..+|...+...+ +. +. ++..++|+.+.++.......... .
T Consensus 117 ------------------------~~~~~y~~~K~~~E~~l~----~~----~~~~~~I~Rp~~v~G~~~~~~~~~~~~~ 164 (212)
T d2a35a1 117 ------------------------KSSIFYNRVKGELEQALQ----EQ----GWPQLTIARPSLLFGPREEFRLAEILAA 164 (212)
T ss_dssp ------------------------TCSSHHHHHHHHHHHHHT----TS----CCSEEEEEECCSEESTTSCEEGGGGTTC
T ss_pred ------------------------ccccchhHHHHHHhhhcc----cc----ccccceeeCCcceeCCcccccHHHHHHH
Confidence 123468999987554332 22 33 67889999998864322211111 1
Q ss_pred hhcchhHHhhhcCccchhHHhhhhhhhhcCCC
Q 018331 282 LLFPPFQKYITKGYVSEDEAGKRLAQVVSDPS 313 (358)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~a~~i~~l~~~~~ 313 (358)
.....+. ...+.+..+|+|++++.++.++.
T Consensus 165 ~~~~~~~--~~~~~i~v~DvA~ai~~~~~~~~ 194 (212)
T d2a35a1 165 PIARILP--GKYHGIEACDLARALWRLALEEG 194 (212)
T ss_dssp CCC------CHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHhhccC--CCCcEEEHHHHHHHHHHHHcCCC
Confidence 1111110 01124788999999999997754
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.35 E-value=1.1e-11 Score=110.48 Aligned_cols=204 Identities=15% Similarity=0.140 Sum_probs=131.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.||||||||.||++++++|.++| +.|+.++|+. +|+.|.++++++++.. ++|+
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g-~~Vi~~~r~~---------------------~D~~d~~~~~~~l~~~-----~~d~ 55 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKN-VEVIPTDVQD---------------------LDITNVLAVNKFFNEK-----KPNV 55 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSS-EEEEEECTTT---------------------CCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEEeechh---------------------ccCCCHHHHHHHHHHc-----CCCE
Confidence 48999999999999999999999 7999998863 5999999998888754 6899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+|+..... ......+..+..|+.....+...+.... ..+++.||...+...
T Consensus 56 vih~a~~~~~~-----~~~~~~~~~~~~n~~~~~~~~~~~~~~~-------~~~~~~ss~~v~~~~-------------- 109 (281)
T d1vl0a_ 56 VINCAAHTAVD-----KCEEQYDLAYKINAIGPKNLAAAAYSVG-------AEIVQISTDYVFDGE-------------- 109 (281)
T ss_dssp EEECCCCCCHH-----HHHHCHHHHHHHHTHHHHHHHHHHHHHT-------CEEEEEEEGGGSCSC--------------
T ss_pred EEeeccccccc-----cccccchhhccccccccccccccccccc-------ccccccccceeeecc--------------
Confidence 99999875321 1233445666777777776666554331 366666665443211
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhh-hhhhc-
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPL-FRLLF- 284 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~-~~~~~- 284 (358)
...+..+..+..+...|+.+|.+.+.+.+ +. ++....++|+.+.++.. +.... .....
T Consensus 110 ----------~~~~~~e~~~~~~~~~~~~~k~~~e~~~~----~~----~~~~~i~R~~~vyG~~~--~~~~~~~~~~~~ 169 (281)
T d1vl0a_ 110 ----------AKEPITEFDEVNPQSAYGKTKLEGENFVK----AL----NPKYYIVRTAWLYGDGN--NFVKTMINLGKT 169 (281)
T ss_dssp ----------CSSCBCTTSCCCCCSHHHHHHHHHHHHHH----HH----CSSEEEEEECSEESSSS--CHHHHHHHHHHH
T ss_pred ----------ccccccccccccchhhhhhhhhHHHHHHH----Hh----CCCccccceeEEeCCCc--ccccchhhhhcc
Confidence 01112233344567789999988555443 22 56788899999988743 22111 10000
Q ss_pred c---hhHHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 285 P---PFQKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 285 ~---~~~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. .........++..+|+++++..++... .+|.|...++.
T Consensus 170 ~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~---~~g~~~~~~~~ 211 (281)
T d1vl0a_ 170 HDELKVVHDQVGTPTSTVDLARVVLKVIDEK---NYGTFHCTCKG 211 (281)
T ss_dssp CSEEEEESSCEECCEEHHHHHHHHHHHHHHT---CCEEEECCCBS
T ss_pred CCceeecCCceeccchhhhhhhhhhhhhhhc---ccCceeEeCCC
Confidence 0 000011224679999999999999764 35666554443
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.30 E-value=8.4e-12 Score=112.54 Aligned_cols=209 Identities=11% Similarity=0.084 Sum_probs=119.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHH--HHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKA--ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~--~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
++||||||||.||++++++|+++| +.|+++.|+.... ............++.++++|+.+.+.+.+.+. .
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G-~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~-------~ 75 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLG-HPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALK-------Q 75 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHT-------T
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC-CEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhcc-------C
Confidence 459999999999999999999999 6898888864221 11111111123568899999999988777665 6
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
.+.++++++..... .|..+...++.++. +.. ..++++.||.......
T Consensus 76 ~~~~~~~~~~~~~~----------------~~~~~~~~~l~~a~----~~~--~~~~v~~Ss~g~~~~~----------- 122 (312)
T d1qyda_ 76 VDVVISALAGGVLS----------------HHILEQLKLVEAIK----EAG--NIKRFLPSEFGMDPDI----------- 122 (312)
T ss_dssp CSEEEECCCCSSSS----------------TTTTTHHHHHHHHH----HSC--CCSEEECSCCSSCTTS-----------
T ss_pred cchhhhhhhhcccc----------------cchhhhhHHHHHHH----Hhc--CCcEEEEeeccccCCC-----------
Confidence 78899988754221 23334444444432 221 2466666665433100
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhhh
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRLL 283 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~~ 283 (358)
...+......|..+|.... .+..+ .++.+..++||.+.++.... ........
T Consensus 123 -------------------~~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~i~r~~~~~g~~~~~-~~~~~~~~ 174 (312)
T d1qyda_ 123 -------------------MEHALQPGSITFIDKRKVR----RAIEA----ASIPYTYVSSNMFAGYFAGS-LAQLDGHM 174 (312)
T ss_dssp -------------------CCCCCSSTTHHHHHHHHHH----HHHHH----TTCCBCEEECCEEHHHHTTT-SSCTTCCS
T ss_pred -------------------cccccchhhhhhHHHHHHH----Hhhcc----cccceEEeccceeecCCccc-hhhHHHHh
Confidence 0112233344555555533 33322 47788888898886542211 11000000
Q ss_pred ------cchh-HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecC
Q 018331 284 ------FPPF-QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWN 324 (358)
Q Consensus 284 ------~~~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d 324 (358)
...+ .......++.++|+|++++.++.++.. .++.++...
T Consensus 175 ~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~-~~~~~~~~~ 221 (312)
T d1qyda_ 175 MPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQT-LNKTMYIRP 221 (312)
T ss_dssp SCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGG-SSSEEECCC
T ss_pred hhcccccccccccccccceeeHHHHHHHHHHHhcCccc-cCceEEEeC
Confidence 0000 011123368999999999999987643 344444433
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.21 E-value=7.5e-11 Score=105.38 Aligned_cols=81 Identities=19% Similarity=0.279 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH-----HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE-----RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~-----~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+.|+||||||||.||+++++.|+++| +.|++++|+..... .....+ ....+.++.+|+.+.......++
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G-~~V~~l~R~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~--- 75 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLG-HPTFLLVRESTASSNSEKAQLLESF--KASGANIVHGSIDDHASLVEAVK--- 75 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTT-CCEEEECCCCCTTTTHHHHHHHHHH--HTTTCEEECCCTTCHHHHHHHHH---
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCC-CeEEEEECCCccccchhHHHHHHhh--ccCCcEEEEeecccchhhhhhhh---
Confidence 35689999999999999999999999 69999988743211 111122 13467889999999988777765
Q ss_pred hcCCCccEEEEccccc
Q 018331 119 RSGRPLDVLVCNAAVY 134 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~ 134 (358)
..+.++++++..
T Consensus 76 ----~~~~vi~~~~~~ 87 (307)
T d1qyca_ 76 ----NVDVVISTVGSL 87 (307)
T ss_dssp ----TCSEEEECCCGG
T ss_pred ----hceeeeeccccc
Confidence 688999988754
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.19 E-value=3.7e-11 Score=107.57 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=96.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.||||||+|.||+++++.|.++| +.|.+ +++.. .+.+|+++.+.++++++.. ++|+
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g-~~v~~-~~~~~-----------------~~~~Dl~~~~~~~~~i~~~-----~~D~ 57 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVG-NLIAL-DVHSK-----------------EFCGDFSNPKGVAETVRKL-----RPDV 57 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTS-EEEEE-CTTCS-----------------SSCCCTTCHHHHHHHHHHH-----CCSE
T ss_pred EEEEECCCCHHHHHHHHHHHhCC-CEEEE-ECCCc-----------------cccCcCCCHHHHHHHHHHc-----CCCE
Confidence 49999999999999999999999 45544 44321 1347999999999888765 6899
Q ss_pred EEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCcccc
Q 018331 127 LVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDL 206 (358)
Q Consensus 127 lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~~~~ 206 (358)
|||+||...... ..+.-+..+.+|+.+...+..++. +. +.+++++||...+...
T Consensus 58 Vih~Aa~~~~~~-----~~~~~~~~~~~n~~~~~~l~~~~~----~~---~~~~~~~ss~~~~~~~-------------- 111 (298)
T d1n2sa_ 58 IVNAAAHTAVDK-----AESEPELAQLLNATSVEAIAKAAN----ET---GAWVVHYSTDYVFPGT-------------- 111 (298)
T ss_dssp EEECCCCCCHHH-----HTTCHHHHHHHHTHHHHHHHHHHT----TT---TCEEEEEEEGGGSCCC--------------
T ss_pred EEEecccccccc-----cccCccccccccccccccchhhhh----cc---ccccccccccccccCC--------------
Confidence 999999763211 122335677889999888888763 32 2578888876644211
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHH
Q 018331 207 RGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQE 246 (358)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~ 246 (358)
...+..+..+..+...|+.+|.+.+.+.+.
T Consensus 112 ----------~~~~~~E~~~~~p~~~y~~~k~~~e~~~~~ 141 (298)
T d1n2sa_ 112 ----------GDIPWQETDATSPLNVYGKTKLAGEKALQD 141 (298)
T ss_dssp ----------TTCCBCTTSCCCCSSHHHHHHHHHHHHHHH
T ss_pred ----------CCCCCccccccCCCchHhhhhhhhhhhHHh
Confidence 111223334445667899999986655443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.10 E-value=5.8e-10 Score=102.73 Aligned_cols=208 Identities=14% Similarity=0.072 Sum_probs=116.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHH-HHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~-i~~~~~~~~~~~~ 122 (358)
+.|+|+||||||.||.++++.|+++| +.|+++.|+.+..... .+. ...++.++++|+.+..+ ++.++ .
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G-~~V~~l~R~~~~~~~~--~~~-~~~~v~~~~gD~~d~~~~~~~a~-------~ 70 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVG-HHVRAQVHSLKGLIAE--ELQ-AIPNVTLFQGPLLNNVPLMDTLF-------E 70 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTT-CCEEEEESCSCSHHHH--HHH-TSTTEEEEESCCTTCHHHHHHHH-------T
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC-CeEEEEECCcchhhhh--hhc-ccCCCEEEEeeCCCcHHHHHHHh-------c
Confidence 57899999999999999999999999 6999999986543321 111 12468899999998654 33332 3
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 202 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~ 202 (358)
..|.++++...... .|+.....++.++...-. .++++.||.......
T Consensus 71 ~~~~~~~~~~~~~~-----------------~~~~~~~~~~~aa~~agv------~~~v~~Ss~~~~~~~---------- 117 (350)
T d1xgka_ 71 GAHLAFINTTSQAG-----------------DEIAIGKDLADAAKRAGT------IQHYIYSSMPDHSLY---------- 117 (350)
T ss_dssp TCSEEEECCCSTTS-----------------CHHHHHHHHHHHHHHHSC------CSEEEEEECCCGGGT----------
T ss_pred CCceEEeecccccc-----------------hhhhhhhHHHHHHHHhCC------CceEEEeeccccccC----------
Confidence 67887776543211 122333344444433211 377777776543200
Q ss_pred ccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccchhhhhh
Q 018331 203 LGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHIPLFRL 282 (358)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~~~~~~ 282 (358)
+......|..+|.....+.+ ..++....++||.+...........+...
T Consensus 118 -----------------------~~~~~~~~~~~k~~~~~~~~--------~~~~~~~~vr~~~~~~~~~~~~~~~~~~~ 166 (350)
T d1xgka_ 118 -----------------------GPWPAVPMWAPKFTVENYVR--------QLGLPSTFVYAGIYNNNFTSLPYPLFQME 166 (350)
T ss_dssp -----------------------SSCCCCTTTHHHHHHHHHHH--------TSSSCEEEEEECEEGGGCBSSSCSSCBEE
T ss_pred -----------------------CcccchhhhhhHHHHHHHHH--------hhccCceeeeeceeecccccccccccccc
Confidence 11122345566766443322 23677888889887553211111100000
Q ss_pred h--------cchhHHhhhcCccc-hhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 283 L--------FPPFQKYITKGYVS-EDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 283 ~--------~~~~~~~~~~~~~~-~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
. ..+........++. .+|+++.+..++.+......|+++...++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~~~~~~g~ 219 (350)
T d1xgka_ 167 LMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGHRIALTFE 219 (350)
T ss_dssp ECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTCEEEECSE
T ss_pred ccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCeEEEEeCC
Confidence 0 00000000011233 47899999998866543456777766553
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.9e-10 Score=101.93 Aligned_cols=221 Identities=12% Similarity=0.001 Sum_probs=126.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH--HHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh--cCCC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFL--KAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR--SGRP 123 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~--~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~--~~~~ 123 (358)
||||||+|.||+++++.|+++|.+.|+.+++-.. +..... ....+|..+.. +..+.... .+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~ 68 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV----------DLNIADYMDKE---DFLIQIMAGEEFGD 68 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHH----------TSCCSEEEEHH---HHHHHHHTTCCCSS
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhccc----------ccchhhhccch---HHHHHHhhhhcccc
Confidence 8999999999999999999999546777653211 111111 01112223232 23333332 3567
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCCCCc
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANL 203 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~~~~ 203 (358)
+++++|.|+..... ....+.....|+.+...+..++.... .++++.||.....+... ..
T Consensus 69 ~~~i~~~aa~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~-------i~~v~~ss~~~~~~~~~----~~--- 127 (307)
T d1eq2a_ 69 VEAIFHEGACSSTT-------EWDGKYMMDNNYQYSKELLHYCLERE-------IPFLYASSAATYGGRTS----DF--- 127 (307)
T ss_dssp CCEEEECCSCCCTT-------CCCHHHHHHHTHHHHHHHHHHHHHHT-------CCEEEEEEGGGGTTCCS----CB---
T ss_pred hhhhhhhccccccc-------cccccccccccccccccccccccccc-------ccccccccccccccccc----cc---
Confidence 88999998864322 12334556777888887777665442 25666666554432110 00
Q ss_pred cccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEecCCcccCCcccccch-----h
Q 018331 204 GDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLYPGCIATTGLFREHI-----P 278 (358)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~PG~v~t~~~~~~~~-----~ 278 (358)
..+.....+...|+.+|.+.+.+++.++.+. ++.+..++|..+.+|....... .
T Consensus 128 -----------------~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~r~~~vyGp~~~~~~~~~~~~~ 186 (307)
T d1eq2a_ 128 -----------------IESREYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREGHKGSMASVAF 186 (307)
T ss_dssp -----------------CSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCGGGGGGSCHHH
T ss_pred -----------------cccccccccccccccccchhhhhcccccccc----ccccccccceeEeecccccccccccccc
Confidence 0111123456689999999888888776654 8899999999998875432211 0
Q ss_pred -hhhhhcc---hh----HHhhhcCccchhHHhhhhhhhhcCCCCCCCceeeecCCC
Q 018331 279 -LFRLLFP---PF----QKYITKGYVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKD 326 (358)
Q Consensus 279 -~~~~~~~---~~----~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~G~~~~~d~~ 326 (358)
+...+.. .. .......++-+++++.++..++... ..+.|....+.
T Consensus 187 ~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~---~~~~~~~~~~~ 239 (307)
T d1eq2a_ 187 HLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENG---VSGIFNLGTGR 239 (307)
T ss_dssp HHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHC---CCEEEEESCSC
T ss_pred ccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhc---ccccccccccc
Confidence 1111110 00 0111124678899999999888654 24555544443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.56 E-value=3.6e-12 Score=107.46 Aligned_cols=45 Identities=31% Similarity=0.330 Sum_probs=39.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM 92 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~ 92 (358)
++.|+||+|++|+++|+.|++.| ++|++.+|++++++...+++..
T Consensus 2 ki~vigGaG~iG~alA~~la~~G-~~V~l~~R~~e~~~~l~~~i~~ 46 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLG-HEIVVGSRREEKAEAKAAEYRR 46 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTT-CEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHh
Confidence 47788999999999999999999 5999999999998888877753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.2e-05 Score=66.35 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=64.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
++++|+++|.|+ ||.|++++..|+..|+..++++.|+.+..+......+.. .........|+.+.+++.+...
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 89 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALA---- 89 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH----
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhc----
Confidence 689999999998 799999999999999889999999876655444332211 1234566789999887766654
Q ss_pred cCCCccEEEEcccc
Q 018331 120 SGRPLDVLVCNAAV 133 (358)
Q Consensus 120 ~~~~iD~lv~~ag~ 133 (358)
..|+|||+...
T Consensus 90 ---~~diiIN~Tp~ 100 (182)
T d1vi2a1 90 ---SADILTNGTKV 100 (182)
T ss_dssp ---TCSEEEECSST
T ss_pred ---ccceeccccCC
Confidence 68999999864
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.88 E-value=2.4e-05 Score=63.03 Aligned_cols=75 Identities=25% Similarity=0.413 Sum_probs=58.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++++++||.|+ |++|..++++|..+|+..+.++.|+.++++...+++. ..+. ..+++.+.+.
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-----~~~~-----~~~~~~~~l~------ 83 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----GEAV-----RFDELVDHLA------ 83 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----CEEC-----CGGGHHHHHH------
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-----cccc-----cchhHHHHhc------
Confidence 689999999998 9999999999999997789999999888887777653 2222 2234333333
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
..|+||++.+..
T Consensus 84 -~~Divi~atss~ 95 (159)
T d1gpja2 84 -RSDVVVSATAAP 95 (159)
T ss_dssp -TCSEEEECCSSS
T ss_pred -cCCEEEEecCCC
Confidence 689999998864
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.72 E-value=6.8e-05 Score=61.50 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=55.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|.++||+||+|++|.+.++.....|+ +|+.+.+++++.+...+ + +.... .|-.+.+..+...+. ...++
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~-~---Ga~~v---i~~~~~~~~~~~~~~--~~~~G 98 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQ-I---GFDAA---FNYKTVNSLEEALKK--ASPDG 98 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH-T---TCSEE---EETTSCSCHHHHHHH--HCTTC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHh-h---hhhhh---cccccccHHHHHHHH--hhcCC
Confidence 488999999999999999999999997 99999998776554433 2 22322 233333332332222 22347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 99 vd~v~D~vG~ 108 (182)
T d1v3va2 99 YDCYFDNVGG 108 (182)
T ss_dssp EEEEEESSCH
T ss_pred CceeEEecCc
Confidence 9999999874
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=8e-05 Score=60.56 Aligned_cols=80 Identities=18% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|.++||+||+|++|...++.+...|+ +|+.+++++++.+.+. ++. .. .+ .|.++.+-.+.+.+.. ....
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~-~~G---a~-~v--i~~~~~~~~~~i~~~t--~~~g 97 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVL-QNG---AH-EV--FNHREVNYIDKIKKYV--GEKG 97 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHH-HTT---CS-EE--EETTSTTHHHHHHHHH--CTTC
T ss_pred CCCEEEEEeccccccccccccccccCc-cccccccccccccccc-ccC---cc-cc--cccccccHHHHhhhhh--ccCC
Confidence 477999999999999999999999997 8999888876655443 332 22 22 3666554333322211 2346
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 98 ~d~v~d~~g~ 107 (174)
T d1yb5a2 98 IDIIIEMLAN 107 (174)
T ss_dssp EEEEEESCHH
T ss_pred ceEEeecccH
Confidence 9999998763
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.71 E-value=0.00011 Score=59.47 Aligned_cols=74 Identities=20% Similarity=0.322 Sum_probs=55.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+|.++|.|| |.+|+.+|++|+++| +.|++++|+.++++...+.+ ........+..........+. ..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g-~~V~v~dr~~~~a~~l~~~~----~~~~~~~~~~~~~~~~~~~i~-------~~ 68 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSG-IKVTVACRTLESAKKLSAGV----QHSTPISLDVNDDAALDAEVA-------KH 68 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTT-CEEEEEESCHHHHHHHHTTC----TTEEEEECCTTCHHHHHHHHT-------TS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCC-CEEEEEECChHHHHHHHhcc----cccccccccccchhhhHhhhh-------cc
Confidence 688999987 999999999999999 59999999998887766543 344555566666665555543 45
Q ss_pred cEEEEcc
Q 018331 125 DVLVCNA 131 (358)
Q Consensus 125 D~lv~~a 131 (358)
|.++.+.
T Consensus 69 ~~~i~~~ 75 (182)
T d1e5qa1 69 DLVISLI 75 (182)
T ss_dssp SEEEECS
T ss_pred ceeEeec
Confidence 6766554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.64 E-value=0.00017 Score=59.01 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=56.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+|+ |+||...++.+...|+.+|+++++++++.+.+ +++. .. .++...-.+..+..+.+.+... ...
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~lG---a~-~vi~~~~~~~~~~~~~i~~~~~-~~g 100 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEIG---AD-LTLNRRETSVEERRKAIMDITH-GRG 100 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHTT---CS-EEEETTTSCHHHHHHHHHHHTT-TSC
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-cccc---ce-EEEeccccchHHHHHHHHHhhC-CCC
Confidence 4789999987 89999999999999976899999998887655 3332 22 2332222333333333333322 235
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 101 ~Dvvid~vG~ 110 (182)
T d1vj0a2 101 ADFILEATGD 110 (182)
T ss_dssp EEEEEECSSC
T ss_pred ceEEeecCCc
Confidence 9999999886
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00015 Score=59.05 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=57.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++||+||+|++|...++.....|+ +|+++++++++.+.+.+ +. .. ++ .|.++.+-.++ +.++. ....
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~-lG---a~-~v--i~~~~~d~~~~-v~~~t-~g~g 97 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALK-AG---AW-QV--INYREEDLVER-LKEIT-GGKK 97 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHH-HT---CS-EE--EETTTSCHHHH-HHHHT-TTCC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHh-cC---Ce-EE--EECCCCCHHHH-HHHHh-CCCC
Confidence 378999999999999999999999997 99999999877765543 32 22 22 36565443333 23222 2447
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+++.+.|.
T Consensus 98 ~d~v~d~~g~ 107 (179)
T d1qora2 98 VRVVYDSVGR 107 (179)
T ss_dssp EEEEEECSCG
T ss_pred eEEEEeCccH
Confidence 9999999875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.52 E-value=0.00024 Score=57.25 Aligned_cols=82 Identities=17% Similarity=0.254 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC-C
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG-R 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~-~ 122 (358)
.|.+++|+| +|+||...++.+...|+ +|+++++++.+.+.+.+. . .. ..+..|-. .++.....+++.+.. +
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~-g---a~-~~~~~~~~-~~~~~~~~~~~~~~~g~ 97 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC-G---AD-VTLVVDPA-KEEESSIIERIRSAIGD 97 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT-T---CS-EEEECCTT-TSCHHHHHHHHHHHSSS
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc-C---Cc-EEEecccc-ccccchhhhhhhccccc
Confidence 466899997 68999999999999997 999999998887665442 1 22 22222322 222334445554443 4
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|.++|.
T Consensus 98 g~D~vid~~g~ 108 (170)
T d1e3ja2 98 LPNVTIDCSGN 108 (170)
T ss_dssp CCSEEEECSCC
T ss_pred CCceeeecCCC
Confidence 79999999985
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.46 E-value=7.4e-05 Score=61.72 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=54.2
Q ss_pred CCeEEE-EcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh-cCC
Q 018331 45 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR-SGR 122 (358)
Q Consensus 45 ~k~~lI-TGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~-~~~ 122 (358)
|.+++| +||+|++|.+.++..-..|+ +||.+.|+.+..++..+.+++.+... ++..|-.+..+....+.++.. ..+
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGad~-vi~~~~~~~~~~~~~v~~~~~~~g~ 106 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGATQ-VITEDQNNSREFGPTIKEWIKQSGG 106 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTCSE-EEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccccE-EEeccccchhHHHHHHHHHHhhccC
Confidence 444555 79999999999999988997 88888877666555544443333332 333322222233333444333 356
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|+++.+.|.
T Consensus 107 ~vdvv~D~vg~ 117 (189)
T d1gu7a2 107 EAKLALNCVGG 117 (189)
T ss_dssp CEEEEEESSCH
T ss_pred CceEEEECCCc
Confidence 79999998763
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.44 E-value=0.00016 Score=59.03 Aligned_cols=79 Identities=22% Similarity=0.240 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|.++||+||+|++|...++.+...|+ .|+++.+++++.+.+ ++ .+.. ++ .|-.+.+-.++ +.+.. ...+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l-~~---~Ga~-~v--i~~~~~~~~~~-v~~~t-~~~g 94 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREML-SR---LGVE-YV--GDSRSVDFADE-ILELT-DGYG 94 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHH-HT---TCCS-EE--EETTCSTHHHH-HHHHT-TTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccc-cceeeeccccccccc-cc---cccc-cc--ccCCccCHHHH-HHHHh-CCCC
Confidence 477999999999999999999999996 888888887665443 32 2333 22 34444432222 22221 1246
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|+++.+.|
T Consensus 95 ~d~v~d~~g 103 (183)
T d1pqwa_ 95 VDVVLNSLA 103 (183)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeccc
Confidence 999999887
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.42 E-value=0.00083 Score=54.04 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |++|...+..+...|+.+|+++++++.+++.+. ++. .-+++..+-.+..+..+.++.- ....
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~G----a~~~~~~~~~~~~~~~~~~~~~--~g~g 97 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIG----ADLVLQISKESPQEIARKVEGQ--LGCK 97 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTT----CSEEEECSSCCHHHHHHHHHHH--HTSC
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhC----Cccccccccccccccccccccc--CCCC
Confidence 3668999986 999999999999999878999999988877654 332 2244445555555544443322 2347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 98 ~Dvvid~~G~ 107 (171)
T d1pl8a2 98 PEVTIECTGA 107 (171)
T ss_dssp CSEEEECSCC
T ss_pred ceEEEeccCC
Confidence 9999999985
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.40 E-value=0.00037 Score=56.33 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=56.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||.+||.|+ ||-+++++..|.+.|+ +|.++.|+.++++...+.+.... .+..+..| +. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~-~~~~~~~~--~~------------~~ 77 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTG-SIQALSMD--EL------------EG 77 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGS-SEEECCSG--GG------------TT
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhcc-cccccccc--cc------------cc
Confidence 578999999997 8999999999999996 89999999988888877765432 23332222 11 12
Q ss_pred CCccEEEEcccc
Q 018331 122 RPLDVLVCNAAV 133 (358)
Q Consensus 122 ~~iD~lv~~ag~ 133 (358)
...|+|||+...
T Consensus 78 ~~~dliIN~Tp~ 89 (170)
T d1nyta1 78 HEFDLIINATSS 89 (170)
T ss_dssp CCCSEEEECCSC
T ss_pred cccceeeccccc
Confidence 368999999754
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.35 E-value=7.7e-05 Score=60.98 Aligned_cols=78 Identities=15% Similarity=0.240 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|.++||+||+||+|...++.....|+ +|+.+++++++.+.+.+ +. .. +++ |-.+. ..+... ....++
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~-lG---a~-~vi--~~~~~--~~~~~~--~~~~~g 98 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRV-LG---AK-EVL--AREDV--MAERIR--PLDKQR 98 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHH-TT---CS-EEE--ECC-------------CCSCC
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHh-cc---cc-eee--ecchh--HHHHHH--HhhccC
Confidence 477899999999999999999989997 89999998877665543 32 22 222 22221 112111 112458
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|+||.+.|.
T Consensus 99 vD~vid~vgg 108 (176)
T d1xa0a2 99 WAAAVDPVGG 108 (176)
T ss_dssp EEEEEECSTT
T ss_pred cCEEEEcCCc
Confidence 9999999885
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.00043 Score=56.83 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=55.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+.++||+||+||+|...++..-..|+..|+.+++++++.....+++.. -.+ .|..+.+. .+.++++. ...+
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga----d~v--i~~~~~~~-~~~~~~~~--~~Gv 101 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF----DAA--VNYKTGNV-AEQLREAC--PGGV 101 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC----SEE--EETTSSCH-HHHHHHHC--TTCE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc----eEE--eeccchhH-HHHHHHHh--ccCc
Confidence 479999999999999999999889987788778877666666655532 222 34443332 22333332 2369
Q ss_pred cEEEEcccc
Q 018331 125 DVLVCNAAV 133 (358)
Q Consensus 125 D~lv~~ag~ 133 (358)
|+++.+.|.
T Consensus 102 Dvv~D~vGg 110 (187)
T d1vj1a2 102 DVYFDNVGG 110 (187)
T ss_dssp EEEEESSCH
T ss_pred eEEEecCCc
Confidence 999999873
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00015 Score=50.52 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
++.++||+||+||+|...++.+...|+ +|+.+.+++++.+.+.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~ 73 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLK 73 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHH
Confidence 467899999999999999999889996 8999999887766553
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.27 E-value=0.0013 Score=51.86 Aligned_cols=119 Identities=19% Similarity=0.128 Sum_probs=72.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC---C-CCceEEEEecCCCHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---A-KENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~---~-~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+..++.+.|+|+ |.+|..++..|+..| +..+++++++++.++-...++.. . ...+.+...|..
T Consensus 3 ~~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~----------- 70 (148)
T d1ldna1 3 NNGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD----------- 70 (148)
T ss_dssp TTTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG-----------
T ss_pred CCCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH-----------
Confidence 446678999997 999999999999988 35899999998776544444432 1 223444444331
Q ss_pred HHhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 117 FRRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.+..-|++|.++|....+. + +. ...+..|.. +++.+.+.+.+.. +++.++++|-..
T Consensus 71 ---~l~daDvvvitag~~~~~~---~-~R---~dl~~~N~~----i~~~i~~~i~~~~-p~a~~ivvtNPv 126 (148)
T d1ldna1 71 ---DCRDADLVVICAGANQKPG---E-TR---LDLVDKNIA----IFRSIVESVMASG-FQGLFLVATNPV 126 (148)
T ss_dssp ---GTTTCSEEEECCSCCCCTT---T-CS---GGGHHHHHH----HHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred ---HhccceeEEEecccccccC---c-ch---hHHHHHHHH----HHHHHHHHHHhhC-CCceEEEecCcc
Confidence 1235799999999753321 1 21 223344544 4444444444332 246777776544
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.27 E-value=0.0013 Score=51.62 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=71.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.+.|+||+|.+|.++|..|+.+|. ..+++++.+..+.+. ..+....... ....-+ ...+..+.++ .-|
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~~~~~-~~~~~~-~~~~~~~~~~-------~aD 70 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHIETRA-TVKGYL-GPEQLPDCLK-------GCD 70 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTSSSSC-EEEEEE-SGGGHHHHHT-------TCS
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhhhhhc-CCCeEE-cCCChHHHhC-------CCC
Confidence 488999999999999999999984 689999987644332 2332221111 111112 2222223332 689
Q ss_pred EEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 126 VLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 126 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
++|..+|....+ ..+. ...+..|..-.-.+.+.+.++ . +++.++++|...-
T Consensus 71 ivVitag~~~~~----g~sR---~~ll~~N~~i~~~i~~~i~~~----~-p~~iiivvtNPvD 121 (144)
T d1mlda1 71 VVVIPAGVPRKP----GMTR---DDLFNTNATIVATLTAACAQH----C-PDAMICIISNPVN 121 (144)
T ss_dssp EEEECCSCCCCT----TCCG---GGGHHHHHHHHHHHHHHHHHH----C-TTSEEEECSSCHH
T ss_pred EEEECCCcCCCC----CCCc---chHHHHHHHHHHHHHHHHHhc----C-CCeEEEEecCchh
Confidence 999999974322 1232 334566666555555555444 2 2478888877654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.23 E-value=0.00057 Score=52.62 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=56.6
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.|+ |.+|+.+++.|.+.| +.|++++++++..+...+.+ ...++.+|.++.+.++++- ....|.
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g-~~v~vid~d~~~~~~~~~~~-----~~~vi~Gd~~~~~~l~~~~------i~~a~~ 68 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKG-HDIVLIDIDKDICKKASAEI-----DALVINGDCTKIKTLEDAG------IEDADM 68 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC-----SSEEEESCTTSHHHHHHTT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CCcceecCChhhhhhhhhhh-----hhhhccCcccchhhhhhcC------hhhhhh
Confidence 5889998 999999999999999 69999999998877765542 4678999999998766651 125677
Q ss_pred EEEc
Q 018331 127 LVCN 130 (358)
Q Consensus 127 lv~~ 130 (358)
++..
T Consensus 69 vv~~ 72 (132)
T d1lssa_ 69 YIAV 72 (132)
T ss_dssp EEEC
T ss_pred hccc
Confidence 7764
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00044 Score=55.92 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=51.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+|.++||+||+|++|...++.+...|+ +|+.+++++++.+... ++. ... + .|..+. .+++. ..++
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~-~lG---a~~-~--i~~~~~------~~~~~-~~~g 91 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPL-ALG---AEE-A--ATYAEV------PERAK-AWGG 91 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHH-HTT---CSE-E--EEGGGH------HHHHH-HTTS
T ss_pred CCCEEEEEeccccchhhhhhhhccccc-cccccccccccccccc-ccc---cce-e--eehhhh------hhhhh-cccc
Confidence 578999999999999999999999997 8999998876665443 332 222 2 233321 12222 2457
Q ss_pred ccEEEEccc
Q 018331 124 LDVLVCNAA 132 (358)
Q Consensus 124 iD~lv~~ag 132 (358)
+|++|.+.|
T Consensus 92 ~D~v~d~~G 100 (171)
T d1iz0a2 92 LDLVLEVRG 100 (171)
T ss_dssp EEEEEECSC
T ss_pred ccccccccc
Confidence 999999776
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.18 E-value=0.00082 Score=53.96 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.+++|+|++|++|..++..+...|+..|+++++++++.+...+ +. .. .. .|.++.+..++..+.. ..+.
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~G---a~-~~--i~~~~~~~~~~~~~~~--~~~~ 97 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-AG---AD-YV--INASMQDPLAEIRRIT--ESKG 97 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-HT---CS-EE--EETTTSCHHHHHHHHT--TTSC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-cC---Cc-ee--eccCCcCHHHHHHHHh--hccc
Confidence 467899999999999999999999996689999999877665543 32 22 22 3444443333332221 2346
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 98 ~d~vid~~g~ 107 (170)
T d1jvba2 98 VDAVIDLNNS 107 (170)
T ss_dssp EEEEEESCCC
T ss_pred chhhhccccc
Confidence 9999999885
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.15 E-value=0.0022 Score=50.24 Aligned_cols=115 Identities=14% Similarity=0.090 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC---CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 45 KGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~---~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+.+.|.|+ |.+|..+|..|+.+| +..|++++++++.++-....+.. ..........|.. .
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--------------~ 69 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--------------D 69 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--------------G
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--------------H
Confidence 446888895 999999999999988 46899999998766544444422 2233344444431 1
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
...-|++|.++|....+ .+.-...+..|. .+++...+.+.+.. +++.++++|-.
T Consensus 70 ~~~adivvitag~~~~~-------g~~r~~l~~~N~----~i~~~~~~~i~~~~-p~aivivvtNP 123 (146)
T d1ez4a1 70 CKDADLVVITAGAPQKP-------GESRLDLVNKNL----NILSSIVKPVVDSG-FDGIFLVAANP 123 (146)
T ss_dssp GTTCSEEEECCCC-----------------CHHHHH----HHHHHHHHHHHHTT-CCSEEEECSSS
T ss_pred hccccEEEEecccccCC-------CCCHHHHHHHHH----HHHHHHHHHHhhcC-CCcEEEEeCCc
Confidence 23689999999975322 112233344454 44555555555443 24667676643
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.12 E-value=0.001 Score=53.71 Aligned_cols=76 Identities=20% Similarity=0.211 Sum_probs=57.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
++++|+++|.|+ ||.+++++..|.+.+ .+|.++.|+.++++...+.+... ..+..+..|.. ..
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~-~~~~~~~~~~~--------------~~ 77 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPY-GNIQAVSMDSI--------------PL 77 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGG-SCEEEEEGGGC--------------CC
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhc-cccchhhhccc--------------cc
Confidence 578999999876 888999999999866 69999999998888887777532 24444444421 13
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
...|+|||+....
T Consensus 78 ~~~diiIN~tp~g 90 (171)
T d1p77a1 78 QTYDLVINATSAG 90 (171)
T ss_dssp SCCSEEEECCCC-
T ss_pred cccceeeeccccc
Confidence 4789999998654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.01 E-value=0.001 Score=54.95 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=72.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |++|...+..+...|+..|+++++++++++.+.+. +.. + ..|-.+. ++.+.+.++. ....
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----Ga~-~--~~~~~~~-~~~~~i~~~t-~g~g 94 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----GFE-I--ADLSLDT-PLHEQIAALL-GEPE 94 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TCE-E--EETTSSS-CHHHHHHHHH-SSSC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----ccc-E--EEeCCCc-CHHHHHHHHh-CCCC
Confidence 4779999986 89999888888888988999999998877655432 122 2 2233333 3333333332 3346
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+|++|.+.|.-..... . ...+..+.-..++.++..++. +|+|+.++-
T Consensus 95 ~D~vid~vG~~~~~~~-----~------~~~~~~~~~~~l~~~~~~~r~----gG~v~~~G~ 141 (195)
T d1kola2 95 VDCAVDAVGFEARGHG-----H------EGAKHEAPATVLNSLMQVTRV----AGKIGIPGL 141 (195)
T ss_dssp EEEEEECCCTTCBCSS-----T------TGGGSBCTTHHHHHHHHHEEE----EEEEEECSC
T ss_pred cEEEEECccccccCCc-----c------cceeecCcHHHHHHHHHHHhc----CCEEEEeee
Confidence 9999999986432211 1 111233444455566666665 379988863
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.96 E-value=0.00097 Score=53.99 Aligned_cols=80 Identities=20% Similarity=0.183 Sum_probs=54.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |+||...++.+...|+.+|+++++++++.+.+.+ +. ..++ +|..+.+.. +.+.++.. ...
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-lG----a~~~--i~~~~~~~~-~~v~~~t~-g~G 96 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-YG----ATDI--LNYKNGHIE-DQVMKLTN-GKG 96 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-HT----CSEE--ECGGGSCHH-HHHHHHTT-TSC
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHh-hC----cccc--ccccchhHH-HHHHHHhh-ccC
Confidence 4678999976 9999999999999998789999999877665543 32 1233 344433222 22332222 235
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 97 ~D~vid~~g~ 106 (174)
T d1jqba2 97 VDRVIMAGGG 106 (174)
T ss_dssp EEEEEECSSC
T ss_pred cceEEEccCC
Confidence 9999999985
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.94 E-value=0.0013 Score=53.29 Aligned_cols=82 Identities=16% Similarity=0.095 Sum_probs=55.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|+|+ ||+|...++.+...|+.+|+++++++++++.+.+. . .. +++ |..+.+.....+.+.. ..+.
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~-G---A~-~~i--n~~~~~~~~~~~~~~~-~g~G 99 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV-G---AT-ECI--SPKDSTKPISEVLSEM-TGNN 99 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH-T---CS-EEE--CGGGCSSCHHHHHHHH-HTSC
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc-C---Cc-EEE--CccccchHHHHHHHHh-cccc
Confidence 4779999986 99999999999999977999999999888765543 2 22 233 2222221112222222 2347
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|++|.+.|..
T Consensus 100 ~d~vi~~~g~~ 110 (176)
T d1d1ta2 100 VGYTFEVIGHL 110 (176)
T ss_dssp CCEEEECSCCH
T ss_pred ceEEEEeCCch
Confidence 99999999864
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.94 E-value=0.003 Score=50.87 Aligned_cols=79 Identities=16% Similarity=0.132 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |+||...+..+...|+.+|+++++++.+++.+.+ +. ..++ .|..+.+ +.+.+.++. .++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~-~G----a~~~--i~~~~~~-~~~~i~~~t--~gg 96 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ-LG----ATHV--INSKTQD-PVAAIKEIT--DGG 96 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH-HT----CSEE--EETTTSC-HHHHHHHHT--TSC
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHH-cC----CeEE--EeCCCcC-HHHHHHHHc--CCC
Confidence 4778999987 9999999999989998788888988877666543 32 1233 3444433 233333332 247
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.|.|.
T Consensus 97 ~D~vid~~G~ 106 (174)
T d1f8fa2 97 VNFALESTGS 106 (174)
T ss_dssp EEEEEECSCC
T ss_pred CcEEEEcCCc
Confidence 9999999985
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=96.93 E-value=0.0014 Score=52.91 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=55.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCC-HHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLAS-LDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~-~~~i~~~~~~~~~~~~ 122 (358)
.|.+++|.|+ ||+|...+..+...|+.+|+++++++++.+...+. . .. +.+ |..+ .+.+....+.. ..+
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~-G---a~-~~i--~~~~~~~~~~~~~~~~--~~~ 97 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV-G---AT-ECV--NPQDYKKPIQEVLTEM--SNG 97 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT-T---CS-EEE--CGGGCSSCHHHHHHHH--TTS
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh-C---Ce-eEE--ecCCchhHHHHHHHHH--hcC
Confidence 4779999999 78999999999999977999999999887755443 1 12 222 2211 12233333332 235
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
.+|++|-+.|..
T Consensus 98 G~D~vid~~G~~ 109 (176)
T d2jhfa2 98 GVDFSFEVIGRL 109 (176)
T ss_dssp CBSEEEECSCCH
T ss_pred CCCEEEecCCch
Confidence 799999998864
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.93 E-value=0.01 Score=46.00 Aligned_cols=115 Identities=14% Similarity=0.048 Sum_probs=70.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecCh--HHHHHHHHHhcC---CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDF--LKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~--~~~~~~~~~~~~---~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+.|+||+|.+|.++|..|+.+|. ..+++++.+. +.++-...++.. ...+..+...|.. +
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~---~----------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE---D----------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG---G-----------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH---H-----------
Confidence 478999999999999999999983 5799998643 333322223321 2334444444432 1
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...-|++|..||....+ ..+. ...++.| ..+++.+.+.+.+.. +++.++.+|-..
T Consensus 68 ~~~aDiVvitaG~~~~~----g~~R---~dl~~~N----~~I~~~i~~~i~~~~-p~~i~ivvtNPv 122 (142)
T d1o6za1 68 TAGSDVVVITAGIPRQP----GQTR---IDLAGDN----APIMEDIQSSLDEHN-DDYISLTTSNPV 122 (142)
T ss_dssp GTTCSEEEECCCCCCCT----TCCH---HHHHHHH----HHHHHHHHHHHHTTC-SCCEEEECCSSH
T ss_pred hhhcCEEEEeccccccc----CCch---hhHHHHH----HHHHHHHHHHHHhcC-CCceEEEecChH
Confidence 23689999999964322 2232 2334434 456666777767654 357777776543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.89 E-value=0.011 Score=46.46 Aligned_cols=118 Identities=11% Similarity=0.021 Sum_probs=66.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCc--------EEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKW--------HIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~--------~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+.|+||+|.+|..++..|+..+.. .++...++...++.....+... ......+...-.+.+ .
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---- 77 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKV----A---- 77 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH----H----
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhh----h----
Confidence 6999999999999999999986621 2333445555555544444332 223333333322221 1
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
+...|++|.++|....+ ..+.+++ +..|+ .+++.+.+.+.+...+.+.|+.+|..
T Consensus 78 ---~~~advViitaG~~~~p----g~~r~dl---~~~N~----~i~~~~~~~i~k~a~~~~~vivvsNP 132 (154)
T d1y7ta1 78 ---FKDADYALLVGAAPRKA----GMERRDL---LQVNG----KIFTEQGRALAEVAKKDVKVLVVGNP 132 (154)
T ss_dssp ---TTTCSEEEECCCCCCCT----TCCHHHH---HHHHH----HHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred ---cccccEEEeecCcCCCC----CCcHHHH---HHHHH----HHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 33789999999986332 2344333 33444 45555555555422112566666543
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.85 E-value=0.0022 Score=51.48 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |++|...++.+...|+.+|+++++++++++.+.+. . ..+++ |..+ +.++...+. .....
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~-g----a~~~i--~~~~-~~~~~~~~~--~~~~g 100 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL-G----ADHVV--DARR-DPVKQVMEL--TRGRG 100 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT-T----CSEEE--ETTS-CHHHHHHHH--TTTCC
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc-c----cceee--cCcc-cHHHHHHHh--hCCCC
Confidence 4678999885 99999999999888987899999998776655432 1 22333 3332 233333321 12346
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.++|.
T Consensus 101 ~d~vid~~g~ 110 (172)
T d1h2ba2 101 VNVAMDFVGS 110 (172)
T ss_dssp EEEEEESSCC
T ss_pred ceEEEEecCc
Confidence 9999999985
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.84 E-value=0.0091 Score=47.32 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC---C-CCceEEEEecCCCHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---A-KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~---~-~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++.+.+.|.|+ |.+|..++..|+.+| +..+++++++++.++-....+.. . .........|..+
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~----------- 85 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSV----------- 85 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGG-----------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhh-----------
Confidence 45567888896 999999999999998 46899999998766544444432 1 2222222223221
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...-|+||..||....+ ..+. ...+..| ..+++.+.+.+.+.. +++.++++|-..
T Consensus 86 ---~~~adiVVitAg~~~~~----g~tR---~~l~~~N----~~i~~~i~~~i~~~~-p~aiiivvtNPv 140 (160)
T d1i0za1 86 ---TANSKIVVVTAGVRQQE----GESR---LNLVQRN----VNVFKFIIPQIVKYS-PDCIIIVVSNPV 140 (160)
T ss_dssp ---GTTCSEEEECCSCCCCT----TCCG---GGGHHHH----HHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred ---cccccEEEEecCCcccc----Ccch---HHHHHHH----HHHHHHHHHHHHhcC-CCcEEEEeCCch
Confidence 23579999999975322 1222 2333334 445666666665543 246788777654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.00088 Score=51.48 Aligned_cols=73 Identities=11% Similarity=0.105 Sum_probs=53.6
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|.++|.|+ |-+|+++++.|.++| +.|++++.+++..+... .. ...++.+|.++.+.+.++ . ..+.|
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g-~~vvvid~d~~~~~~~~----~~--~~~~~~gd~~~~~~l~~a--~----i~~a~ 66 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMG-HEVLAVDINEEKVNAYA----SY--ATHAVIANATEENELLSL--G----IRNFE 66 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTT-CCCEEEESCHHHHHHTT----TT--CSEEEECCTTCTTHHHHH--T----GGGCS
T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CeEEEecCcHHHHHHHH----Hh--CCcceeeecccchhhhcc--C----Ccccc
Confidence 46778866 899999999999999 59999999987766542 22 235677999998876665 1 12467
Q ss_pred EEEEccc
Q 018331 126 VLVCNAA 132 (358)
Q Consensus 126 ~lv~~ag 132 (358)
.+|.+.+
T Consensus 67 ~vi~~~~ 73 (134)
T d2hmva1 67 YVIVAIG 73 (134)
T ss_dssp EEEECCC
T ss_pred EEEEEcC
Confidence 7776655
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.80 E-value=0.0049 Score=48.20 Aligned_cols=119 Identities=13% Similarity=0.055 Sum_probs=70.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 46 GSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
|.+.|+|+ |.+|..++..|+.+| +..+++++++++.++-....+.. ..........|. +.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~---~~----------- 66 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW---AA----------- 66 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG---GG-----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCH---HH-----------
Confidence 56788895 999999999999988 46899999998766544443422 122333333332 11
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...-|++|.+||....... ..-+.-...+..| ..+++.+.+.+.+.. +++.++++|-..
T Consensus 67 l~~adiVVitaG~~~~~~~---~~g~~R~~l~~~N----~~i~~~i~~~i~~~~-p~aivivvtNPv 125 (146)
T d1hyha1 67 LADADVVISTLGNIKLQQD---NPTGDRFAELKFT----SSMVQSVGTNLKESG-FHGVLVVISNPV 125 (146)
T ss_dssp GTTCSEEEECCSCGGGTC----------CTTHHHH----HHHHHHHHHHHHHTT-CCSEEEECSSSH
T ss_pred hccccEEEEeccccccccc---cCCccHHHHHHHH----HHHHHHHHHHHhhcC-CCeEEEEecCcH
Confidence 2367999999997532110 0111112223344 455666666666544 356777776544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.79 E-value=0.0033 Score=50.68 Aligned_cols=80 Identities=16% Similarity=0.188 Sum_probs=54.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHH-HHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLD-SVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~-~i~~~~~~~~~~~~ 122 (358)
.|.+++|.|+ ||+|...++.+...|+.+|+.+++++++++.+.+ +. ...++ |.++.+ .+.+.... ...+
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-lG----a~~~i--~~~~~d~~~~~~~~~--~~~~ 96 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-LG----ATECL--NPKDYDKPIYEVICE--KTNG 96 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-TT----CSEEE--CGGGCSSCHHHHHHH--HTTS
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-cC----CcEEE--cCCCchhHHHHHHHH--hcCC
Confidence 5779999986 9999999999999998799999999988776643 32 22333 322222 12222221 1234
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|++|-++|.
T Consensus 97 G~d~vid~~g~ 107 (174)
T d1p0fa2 97 GVDYAVECAGR 107 (174)
T ss_dssp CBSEEEECSCC
T ss_pred CCcEEEEcCCC
Confidence 79999999885
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.011 Score=45.94 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=68.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhC-C-CcEEEEEecChHHHHHHHHHhcCCCCceEEEE-ecCCCHHHHHHHHHHHHhcCCC
Q 018331 47 SVIITGASSGLGLATAKALAET-G-KWHIIMACRDFLKAERAAKSAGMAKENYTIMH-LDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~-G-a~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~-~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.+.|+|++|.+|.+++..|+.+ + +..+++++..+. .+-....+........... ..-.+.+. ++ .
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~g~a~Dl~h~~~~~~~~~~~~~~~~~~----~~-------~ 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDATPA----LE-------G 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HHHHHHHHHTSCSSCEEEEECSSCCHHH----HT-------T
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-chhHHHHHHCCccccCCcEEEcCCCccc----cC-------C
Confidence 4789999999999999988643 4 368999998653 3333334433222222111 22223322 22 5
Q ss_pred ccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 124 LDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 124 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
-|++|.++|....+ ..+. ...+..|..-.-.+.+.+.++- +++.++++|....
T Consensus 70 aDvvvitaG~~~k~----g~~R---~dl~~~N~~i~~~v~~~i~~~~-----p~aivivvtNPvD 122 (145)
T d2cmda1 70 ADVVLISAGVRRKP----GMDR---SDLFNVNAGIVKNLVQQVAKTC-----PKACIGIITNPVN 122 (145)
T ss_dssp CSEEEECCSCCCCT----TCCG---GGGHHHHHHHHHHHHHHHHHHC-----TTSEEEECSSSHH
T ss_pred CCEEEECCCccCCC----Ccch---hhHHHHHHHHHHHHHHHHHhhC-----CCcEEEEccCCch
Confidence 79999999975322 1232 3345566554444554444432 2467888877654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.70 E-value=0.0025 Score=51.13 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=54.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ ||+|...++.+...|+.+|+.+++++.+.+.+. ++. .-+++..+- ..+.+.+.++.. ..+.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak-~lG----a~~~i~~~~-~~~~~~~~~~~~--~~~g 98 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFG----ATECINPQD-FSKPIQEVLIEM--TDGG 98 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHT----CSEEECGGG-CSSCHHHHHHHH--TTSC
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHH-HhC----CcEEEeCCc-hhhHHHHHHHHH--cCCC
Confidence 4779999988 699999999999999878999999887765543 443 222332211 112233333332 2347
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 99 ~D~vid~~G~ 108 (176)
T d2fzwa2 99 VDYSFECIGN 108 (176)
T ss_dssp BSEEEECSCC
T ss_pred CcEeeecCCC
Confidence 9999999885
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0034 Score=52.80 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=54.6
Q ss_pred ccCCCCeEEEEcC----------------CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecC
Q 018331 41 KTLRKGSVIITGA----------------SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDL 104 (358)
Q Consensus 41 ~~l~~k~~lITGa----------------s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl 104 (358)
.||+|+++|||+| ||-.|.++|+.+..+|| .|.++.-.... .....+.. ..+
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga-~V~li~g~~~~---------~~p~~~~~--~~~ 69 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGA-NVTLVSGPVSL---------PTPPFVKR--VDV 69 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTC-EEEEEECSCCC---------CCCTTEEE--EEC
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCC-chhhhhccccc---------Cccccccc--cee
Confidence 4899999999987 56889999999999997 66665543211 01123333 345
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEEcccccC
Q 018331 105 ASLDSVRQFVDTFRRSGRPLDVLVCNAAVYL 135 (358)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~iD~lv~~ag~~~ 135 (358)
...++....+.+. +...|++|++|+...
T Consensus 70 ~t~~~m~~~~~~~---~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 70 MTALEMEAAVNAS---VQQQNIFIGCAAVAD 97 (223)
T ss_dssp CSHHHHHHHHHHH---GGGCSEEEECCBCCS
T ss_pred hhhHHHHHHHHhh---hccceeEeeeechhh
Confidence 5666665555443 346799999998863
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.61 E-value=0.031 Score=44.81 Aligned_cols=117 Identities=10% Similarity=-0.010 Sum_probs=63.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecCh--HHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~--~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+.||||+|.||+.++..|+.... ..+.+.+.+. ..++....++... ......+..- ++.. +.
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~-~~~~---~~---- 97 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIG-IDPY---EV---- 97 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE-SCHH---HH----
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCcccc-ccch---hh----
Confidence 699999999999999999997431 1455555543 3344444444332 1222222211 2211 11
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+...|++|..+|....+ ..+.+ ..+..|. .+++...+.+.+...+..+|+.+|-
T Consensus 98 ---~~~aDvVvi~ag~~rkp----g~tR~---Dll~~N~----~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 98 ---FEDVDWALLIGAKPRGP----GMERA---ALLDING----QIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp ---TTTCSEEEECCCCCCCT----TCCHH---HHHHHHH----HHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ---ccCCceEEEeeccCCCC----CCcHH---HHHHHHH----HHHHHHHHHHHhhCCCCcEEEEecC
Confidence 34799999999985332 23443 3444554 4445555555543211245666654
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.59 E-value=0.0039 Score=50.23 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |+||...++.+...|+..|+++++++.+++...+ +. ...++...-.+ +......+.. ..+.
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~-~G----a~~~i~~~~~~-~~~~~~~~~~--~~~G 98 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA-LG----ATDCLNPRELD-KPVQDVITEL--TAGG 98 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT----CSEEECGGGCS-SCHHHHHHHH--HTSC
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH-hC----CCcccCCccch-hhhhhhHhhh--hcCC
Confidence 4678999975 9999999999999998889999999877655443 32 22333222211 1222222222 2357
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|-|+|.
T Consensus 99 ~d~vie~~G~ 108 (174)
T d1e3ia2 99 VDYSLDCAGT 108 (174)
T ss_dssp BSEEEESSCC
T ss_pred CcEEEEeccc
Confidence 9999999985
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=96.54 E-value=0.0008 Score=54.18 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=37.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
++.++||+||+||+|...++.....|+ +|+.+.+++++.+.+.+
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~ 66 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQ 66 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHh
Confidence 466899999999999999999989997 89999998777665543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.52 E-value=0.0086 Score=47.42 Aligned_cols=119 Identities=14% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC---C-CCceEEEEecCCCHHHHHHHHHHH
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM---A-KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~---~-~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
++...+.|+|+ |.+|..+|..|+.+| +..+++++++.+.++-....+.. . +........|..
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~------------ 83 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN------------ 83 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG------------
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh------------
Confidence 45556888886 999999999999998 35899999998766544444432 1 222222223321
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
....-|++|..||....+ ..+. ...++.|. .+.+.+.+.+.+.. +++.++++|....
T Consensus 84 --~~~~adivvitag~~~~~----~~~R---~dll~~N~----~i~~~i~~~i~~~~-p~~ivivvtNPvD 140 (159)
T d2ldxa1 84 --VSANSKLVIITAGARMVS----GQTR---LDLLQRNV----AIMKAIVPGVIQNS-PDCKIIVVTNPVD 140 (159)
T ss_dssp --GGTTEEEEEECCSCCCCT----TTCS---SCTTHHHH----HHHHHHTTTHHHHS-TTCEEEECSSSHH
T ss_pred --hhccccEEEEecccccCC----CCCH---HHHHHHHH----HHHHHHHHHHhccC-CCeEEEEeCCcHH
Confidence 123689999999975332 1122 12233343 34455555544433 2578888877553
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.49 E-value=0.0078 Score=46.71 Aligned_cols=114 Identities=16% Similarity=0.077 Sum_probs=62.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|+|+ |.+|..++..|+.+|- ..+++++++++.++-...++... .........| . +...
T Consensus 3 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~-----------~~~~ 67 (142)
T d1y6ja1 3 KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y-----------SDVK 67 (142)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G-----------GGGT
T ss_pred eEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H-----------HHhC
Confidence 4666687 9999999999999883 58999999886655444444432 1222222221 1 1123
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.-|++|.+||....+ ..+ -...+..|. .+++.+.+.+.+.. +++.++++|-..
T Consensus 68 ~adivvitag~~~~~----~~~---r~~l~~~N~----~i~~~i~~~i~~~~-p~ai~ivvtNPv 120 (142)
T d1y6ja1 68 DCDVIVVTAGANRKP----GET---RLDLAKKNV----MIAKEVTQNIMKYY-NHGVILVVSNPV 120 (142)
T ss_dssp TCSEEEECCCC----------C---HHHHHHHHH----HHHHHHHHHHHHHC-CSCEEEECSSSH
T ss_pred CCceEEEecccccCc----Ccc---hhHHhhHHH----HHHHHHHHHhhccC-CCceEEEecChH
Confidence 679999999975322 112 233344555 44455555555433 246777766543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.0055 Score=48.82 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |+||...++.+...|+ .++++++++++.+.+ +++. .. .+ .|..+.+... ...+.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a-~~lG---ad-~~--i~~~~~~~~~-------~~~~~ 93 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGA-HVVAFTTSEAKREAA-KALG---AD-EV--VNSRNADEMA-------AHLKS 93 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSGGGHHHH-HHHT---CS-EE--EETTCHHHHH-------TTTTC
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccc-cchhhccchhHHHHH-hccC---Cc-EE--EECchhhHHH-------HhcCC
Confidence 4779999986 9999999999988997 777788887766543 4443 22 22 4555554322 22357
Q ss_pred ccEEEEcccc
Q 018331 124 LDVLVCNAAV 133 (358)
Q Consensus 124 iD~lv~~ag~ 133 (358)
+|++|.+.|.
T Consensus 94 ~D~vid~~g~ 103 (168)
T d1uufa2 94 FDFILNTVAA 103 (168)
T ss_dssp EEEEEECCSS
T ss_pred Cceeeeeeec
Confidence 9999999985
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.46 E-value=0.008 Score=47.33 Aligned_cols=124 Identities=13% Similarity=0.007 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+.+.+.|.|+ |.+|..++..|+..+...+++++.+++.++-....+.. .+........ ++.+ +.++
T Consensus 6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~--~~~~---~~~~---- 75 (154)
T d1pzga1 6 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE--YSYE---AALT---- 75 (154)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE--CSHH---HHHT----
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc--Cchh---hhhc----
Confidence 4567888897 99999999999988855899999887655544433321 1112111111 1111 1122
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCH-HhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCC
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTA-EGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITG 188 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~-~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~ 188 (358)
.-|+||.++|....+. +.+. ..-...+..|..-...+.+.+ .+.. +++.++++|....
T Consensus 76 ---~adiVvitag~~~~~g---~~~~~~tR~~l~~~n~~iv~~i~~~i----~~~~-p~aiviivsNPvd 134 (154)
T d1pzga1 76 ---GADCVIVTAGLTKVPG---KPDSEWSRNDLLPFNSKIIREIGQNI----KKYC-PKTFIIVVTNPLD 134 (154)
T ss_dssp ---TCSEEEECCSCSSCTT---CCGGGCCGGGGHHHHHHHHHHHHHHH----HHHC-TTCEEEECCSSHH
T ss_pred ---CCCeEEEecccccCCC---CCCcccchhhhhhhhHHHHHHHHHHH----HhcC-CCcEEEEeCCcHH
Confidence 6899999999864322 1111 112233444544444444444 4332 2467777776553
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0015 Score=52.98 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=36.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
++.++||+||+||+|...++..-..|+ +|+.+.+++++.+.+.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~ 73 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLK 73 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHH
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHH
Confidence 345899999999999999999999997 8999999987765543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.40 E-value=0.018 Score=44.74 Aligned_cols=105 Identities=21% Similarity=0.103 Sum_probs=59.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChH--HHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFL--KAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~--~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
.+.|+||+|.+|.+++..|+.+| +..+++++++++ +++-....+.. ..........--.+. +
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~-----------~ 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL-----------R 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG-----------G
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH-----------H
Confidence 48899999999999999999999 468999998753 23322222221 122222221111111 1
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHH
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDD 169 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~ 169 (358)
.+..-|++|.+||....+ ..+. ...+..|..-.-.+.+.+.++
T Consensus 71 ~l~~aDvVVitAG~~~~~----g~sR---~dl~~~Na~iv~~i~~~i~~~ 113 (145)
T d1hyea1 71 IIDESDVVIITSGVPRKE----GMSR---MDLAKTNAKIVGKYAKKIAEI 113 (145)
T ss_dssp GGTTCSEEEECCSCCCCT----TCCH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccceEEEEecccccCC----CCCh---hhhhhhhHHHHHHHHHHHhcc
Confidence 123689999999975322 2233 234455555444444444433
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.40 E-value=0.028 Score=43.86 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=69.4
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+-|.|+ |.+|.+++..|+..+...+++++++.+.++-....+.. ...+..+...+- . +...
T Consensus 5 KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~--~-----------~~~~ 70 (150)
T d1t2da1 5 KIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNT--Y-----------DDLA 70 (150)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECC--G-----------GGGT
T ss_pred eEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccc--c-----------cccC
Confidence 5777785 99999999999988877899999987665544433322 122333333221 1 1123
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.-|++|.++|....+... + ....-...+..|. .+++.+.+.+.+.. +++.++++|-..
T Consensus 71 ~advvvitag~~~~~g~~-~-~~~~R~~l~~~N~----~iv~~i~~~i~~~~-p~aivivvtNPv 128 (150)
T d1t2da1 71 GADVVIVTAGFTKAPGKS-D-KEWNRDDLLPLNN----KIMIEIGGHIKKNC-PNAFIIVVTNPV 128 (150)
T ss_dssp TCSEEEECCSCSSCTTCC-S-TTCCGGGGHHHHH----HHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCcEEEEecccccCCCCC-c-cccchhHHHHHHH----HHHHHHHHHHHhcC-CCeEEEEecCch
Confidence 689999999976432110 0 1111233355554 44444445444433 246777776644
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.29 E-value=0.02 Score=44.16 Aligned_cols=113 Identities=21% Similarity=0.159 Sum_probs=67.5
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC---CCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~---~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|.|+ |.+|..++..|+.+|- ..+++++++++.++-....+.. ...+......|. ++ +.
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~---~~-----------~~ 66 (140)
T d1a5za1 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDY---AD-----------LK 66 (140)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCG---GG-----------GT
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcH---HH-----------hc
Confidence 3667786 9999999999998883 5899999998766544433322 122333333332 11 23
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
.-|++|.++|....+ ..+. ...+..|. .+++.+.+.+.+.. +++.++++|-.
T Consensus 67 ~adivvitag~~~~~----g~~r---~dl~~~N~----~I~~~i~~~i~~~~-p~aivivvtNP 118 (140)
T d1a5za1 67 GSDVVIVAAGVPQKP----GETR---LQLLGRNA----RVMKEIARNVSKYA-PDSIVIVVTNP 118 (140)
T ss_dssp TCSEEEECCCCCCCS----SCCH---HHHHHHHH----HHHHHHHHHHHHHC-TTCEEEECSSS
T ss_pred CCCEEEEecccccCC----Ccch---hhhhcccc----chHHHHHHHHHhcC-CCcEEEEeCCc
Confidence 679999999975332 1222 22344443 45555555555543 24677776654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.29 E-value=0.035 Score=42.71 Aligned_cols=114 Identities=15% Similarity=0.089 Sum_probs=66.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcCC----CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGMA----KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.+.|+|| |.+|..++..|+..| +..+++++.++..++.....+... ..+..+...+ +.+. +
T Consensus 2 KI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~--~~~~-----------~ 67 (142)
T d1guza1 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN--DYAD-----------T 67 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES--CGGG-----------G
T ss_pred EEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecC--CHHH-----------h
Confidence 3677796 999999999999998 368999999886655443333221 2233333221 1211 2
Q ss_pred CCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecC
Q 018331 122 RPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSI 186 (358)
Q Consensus 122 ~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~ 186 (358)
..-|++|.++|....+ ..+. ...++.|..- ++-..+.+.+.. +++.++++|-.
T Consensus 68 ~dadvvvitag~~~~~----g~~r---~~l~~~N~~i----~~~i~~~i~~~~-p~aivivvtNP 120 (142)
T d1guza1 68 ANSDIVIITAGLPRKP----GMTR---EDLLMKNAGI----VKEVTDNIMKHS-KNPIIIVVSNP 120 (142)
T ss_dssp TTCSEEEECCSCCCCT----TCCH---HHHHHHHHHH----HHHHHHHHHHHC-SSCEEEECCSS
T ss_pred cCCeEEEEEEecCCCC----CCch---HHHHHHHHHH----HHHHHHHhhccC-CCeEEEEecCC
Confidence 3689999999975322 1222 2334445444 444444444332 23677776553
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.25 E-value=0.019 Score=44.35 Aligned_cols=115 Identities=18% Similarity=0.095 Sum_probs=67.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC----CCceEEEEe-cCCCHHHHHHHHHHHHhc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA----KENYTIMHL-DLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~----~~~i~~~~~-Dl~~~~~i~~~~~~~~~~ 120 (358)
|.+.|+|+ |.+|.++|..|+.++...+++++.+++..+.....+... .....+... |..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG--------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH--------------
Confidence 46777786 999999999999988657999998876555444333211 122222222 2211
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
...-|++|.+||....+ ..+. ...+..| ..+++.+.+.+.+.. +++.++++|-..
T Consensus 67 ~~~advvvitag~~~~~----~~~r---~dl~~~N----~~i~~~i~~~i~k~~-p~aivivvtNPv 121 (142)
T d1uxja1 67 TANSDVIVVTSGAPRKP----GMSR---EDLIKVN----ADITRACISQAAPLS-PNAVIIMVNNPL 121 (142)
T ss_dssp GTTCSEEEECCSCC----------------CHHHH----HHHHHHHHHHHGGGC-TTCEEEECSSSH
T ss_pred hcCCCEEEEeeeccCCc----Ccch---hHHHhHH----HHHHHHHHHHHhccC-CCceEEEeCCch
Confidence 12579999999976332 1122 2333444 357777777777654 346777765543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.01 Score=47.16 Aligned_cols=76 Identities=18% Similarity=0.190 Sum_probs=51.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.+++|.|+ |++|...++.+...|+ +|+++++++++++.+. ++. .. +++ |..+... .. ....+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~-~lG---a~-~~i--~~~~~~~---~~---~~~~~~ 91 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGA-ETYVISRSSRKREDAM-KMG---AD-HYI--ATLEEGD---WG---EKYFDT 91 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHH-HHT---CS-EEE--EGGGTSC---HH---HHSCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccc-cccccccchhHHHHhh-ccC---Cc-EEe--eccchHH---HH---Hhhhcc
Confidence 4778999987 9999999998888997 8999999987776554 332 22 222 2221111 11 123457
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|+++.+.|..
T Consensus 92 ~d~vi~~~~~~ 102 (168)
T d1piwa2 92 FDLIVVCASSL 102 (168)
T ss_dssp EEEEEECCSCS
T ss_pred cceEEEEecCC
Confidence 99999998764
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.18 E-value=0.038 Score=42.68 Aligned_cols=115 Identities=17% Similarity=0.149 Sum_probs=67.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC---CCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 47 SVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM---AKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~---~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.|+|+ |.+|.++|..|+.+|. ..+++++++++.++-....+.. ..........+ +.+. ..
T Consensus 3 Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~~~-----------~~ 68 (143)
T d1llda1 3 KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DPEI-----------CR 68 (143)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CGGG-----------GT
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CHHH-----------hh
Confidence 4677786 9999999999999983 5899999998766544433332 12222322221 1111 12
Q ss_pred CccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 123 PLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 123 ~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
.-|+||.+||....+ ..+.. ..+..|.. +++...+.+.+.. +++.++++|-..
T Consensus 69 daDvVVitaG~~~~~----g~~R~---dl~~~N~~----i~~~i~~~i~~~~-p~ai~ivvtNPv 121 (143)
T d1llda1 69 DADMVVITAGPRQKP----GQSRL---ELVGATVN----ILKAIMPNLVKVA-PNAIYMLITNPV 121 (143)
T ss_dssp TCSEEEECCCCCCCT----TCCHH---HHHHHHHH----HHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred CCcEEEEecccccCC----CCchh---hhhhhhHH----HHHHHHHHHHhhC-CCeEEEEeCCch
Confidence 579999999975322 22332 34455554 4444444444433 236677766543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.16 E-value=0.02 Score=45.52 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHH-HHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDS-VRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~-i~~~~~~~~~~~~ 122 (358)
.|.+++|.|+ ||+|...+..+...|+..|+.+++++++++.+.+ +. .-+++ |..+.+. .++..+.. ..+
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~-~G----Ad~~i--n~~~~~~~~~~~~~~~--~~~ 97 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV-FG----ATDFV--NPNDHSEPISQVLSKM--TNG 97 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH-TT----CCEEE--CGGGCSSCHHHHHHHH--HTS
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHH-cC----CcEEE--cCCCcchhHHHHHHhh--ccC
Confidence 5778999985 7788888888988998899999999888766543 32 22333 2222211 12222221 134
Q ss_pred CccEEEEcccc
Q 018331 123 PLDVLVCNAAV 133 (358)
Q Consensus 123 ~iD~lv~~ag~ 133 (358)
.+|+++-+.|.
T Consensus 98 G~d~vid~~G~ 108 (175)
T d1cdoa2 98 GVDFSLECVGN 108 (175)
T ss_dssp CBSEEEECSCC
T ss_pred CcceeeeecCC
Confidence 79999999985
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.15 E-value=0.0054 Score=49.20 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=37.0
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
|++.|.|+ |.+|.++|..|+++| +.|.+++|+++..+...+.
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G-~~V~~~~r~~~~~~~~~~~ 43 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKG-QSVLAWDIDAQRIKEIQDR 43 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHc
Confidence 68999998 999999999999999 6999999998887766543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.09 E-value=0.0045 Score=49.48 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=40.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
++|.++|.|+ ||.+++++..|.+.|+.+|.++.|+.++.+...+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 5678999987 999999999999999778999999998887776654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.09 E-value=0.017 Score=45.51 Aligned_cols=42 Identities=29% Similarity=0.247 Sum_probs=35.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
.|.+++|.|+ |++|...++.+...|+ +|+.+++++.+++...
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGL-HVAAIDIDDAKLELAR 68 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCC-ccceecchhhHHHhhh
Confidence 4778999886 9999999999999995 9999999987776554
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=95.88 E-value=0.014 Score=45.39 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=49.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+..-|++.|.||.|.+|..+++.|.+.| +.|.+.+|+.......... ...+.....+ ...+...+.++....
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G-~~V~~~d~~~~~~~~~~~~----~~~~v~~~~~---~~~~~~v~~~~~~~~ 77 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASG-YPISILDREDWAVAESILA----NADVVIVSVP---INLTLETIERLKPYL 77 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTT-CCEEEECTTCGGGHHHHHT----TCSEEEECSC---GGGHHHHHHHHGGGC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcC-CCcEecccccccccchhhh----hccccccccc---hhhheeeeecccccc
Confidence 4456789999999999999999999999 7999999986544332211 2334433333 344555666665544
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.0035 Score=44.91 Aligned_cols=74 Identities=14% Similarity=0.123 Sum_probs=48.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+++||+++|.|. |.-|+++|+.|+++|+ .|++.+.+..... .+.+. ..+.+...... .. .++
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~-~v~~~D~~~~~~~--~~~~~---~~~~~~~~~~~-~~----~~~------ 63 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGV-TPRVMDTRMTPPG--LDKLP---EAVERHTGSLN-DE----WLM------ 63 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEESSSSCTT--GGGSC---TTSCEEESBCC-HH----HHH------
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCC-EEEEeeCCcCchh--HHHHh---hccceeecccc-hh----hhc------
Confidence 689999999988 7789999999999995 8888887643211 11121 22333333322 21 122
Q ss_pred CCccEEEEccccc
Q 018331 122 RPLDVLVCNAAVY 134 (358)
Q Consensus 122 ~~iD~lv~~ag~~ 134 (358)
.+|.+|...|+-
T Consensus 64 -~~d~vi~SPGi~ 75 (93)
T d2jfga1 64 -AADLIVASPGIA 75 (93)
T ss_dssp -HCSEEEECTTSC
T ss_pred -cCCEEEECCCCC
Confidence 479999999974
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.81 E-value=0.046 Score=42.90 Aligned_cols=79 Identities=14% Similarity=0.166 Sum_probs=52.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc---------C-CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG---------M-AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~---------~-~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+.|.| .|-+|.++|+.|.+.| +.|++++|+++..+...+.-. . ....+.++.+ ..+.+.++++++
T Consensus 3 I~iIG-~G~mG~~lA~~l~~~g-~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l 77 (165)
T d2f1ka2 3 IGVVG-LGLIGASLAGDLRRRG-HYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKL 77 (165)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHH
T ss_pred EEEEe-ecHHHHHHHHHHHHCC-CEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhh
Confidence 56665 4999999999999999 699999999877766544310 0 1223444433 356778888888
Q ss_pred HhcCCCccEEEEcc
Q 018331 118 RRSGRPLDVLVCNA 131 (358)
Q Consensus 118 ~~~~~~iD~lv~~a 131 (358)
.....+=.+|+..+
T Consensus 78 ~~~l~~~~iv~~~~ 91 (165)
T d2f1ka2 78 IPHLSPTAIVTDVA 91 (165)
T ss_dssp GGGSCTTCEEEECC
T ss_pred hhhcccccceeecc
Confidence 76654444555443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.81 E-value=0.023 Score=46.66 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=61.9
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+++|+++|=-|+.+|. ++..++.+|+..|++++.++..++.+.+.++..+.+..++..|+...
T Consensus 42 ~~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~------------ 106 (201)
T d1wy7a1 42 LGDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEF------------ 106 (201)
T ss_dssp TTSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGC------------
T ss_pred cCCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhh------------
Confidence 357899999988887662 23345678877999999999888888888887778888998886432
Q ss_pred cCCCccEEEEccccc
Q 018331 120 SGRPLDVLVCNAAVY 134 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~ 134 (358)
.+++|+||.|.-+.
T Consensus 107 -~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 107 -NSRVDIVIMNPPFG 120 (201)
T ss_dssp -CCCCSEEEECCCCS
T ss_pred -CCcCcEEEEcCccc
Confidence 35799999998764
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.77 E-value=0.02 Score=42.19 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=32.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+++||++||.||. .+|.+-++.|++.|| .|++++...
T Consensus 8 l~l~~k~vlVvG~G-~va~~ka~~ll~~ga-~v~v~~~~~ 45 (113)
T d1pjqa1 8 CQLRDRDCLIVGGG-DVAERKARLLLEAGA-RLTVNALTF 45 (113)
T ss_dssp ECCBTCEEEEECCS-HHHHHHHHHHHHTTB-EEEEEESSC
T ss_pred EEeCCCEEEEECCC-HHHHHHHHHHHHCCC-eEEEEeccC
Confidence 48999999999985 599999999999997 777777654
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.023 Score=44.19 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=56.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
.++|.|. |.+|+.+++.|.++| ..|+++..+++......+... ...+.++.+|.++.+.++++- ..+.|.
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~-~~v~vId~d~~~~~~~~~~~~--~~~~~vi~Gd~~d~~~L~~a~------i~~a~~ 74 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRG-QNVTVISNLPEDDIKQLEQRL--GDNADVIPGDSNDSSVLKKAG------IDRCRA 74 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHH--CTTCEEEESCTTSHHHHHHHT------TTTCSE
T ss_pred EEEEECC-CHHHHHHHHHHHHcC-CCEEEEeccchhHHHHHHHhh--cCCcEEEEccCcchHHHHHhc------cccCCE
Confidence 4777777 799999999999999 588888988765544444432 246789999999998766651 125677
Q ss_pred EEEccc
Q 018331 127 LVCNAA 132 (358)
Q Consensus 127 lv~~ag 132 (358)
+|.+.+
T Consensus 75 vi~~~~ 80 (153)
T d1id1a_ 75 ILALSD 80 (153)
T ss_dssp EEECSS
T ss_pred EEEccc
Confidence 877653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.46 E-value=0.2 Score=38.30 Aligned_cols=114 Identities=12% Similarity=0.019 Sum_probs=68.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCC-CcEEEEEecChHHHHHHHHHhcC----CCCceEEEEe-cCCCHHHHHHHHHHHHhc
Q 018331 47 SVIITGASSGLGLATAKALAETG-KWHIIMACRDFLKAERAAKSAGM----AKENYTIMHL-DLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~G-a~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~-Dl~~~~~i~~~~~~~~~~ 120 (358)
.+.|.|+ |.+|.++|..|+.+| +..+++++++++.++-....+.. ......+... |..+
T Consensus 2 KI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~-------------- 66 (142)
T d1ojua1 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSL-------------- 66 (142)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGG--------------
T ss_pred EEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHH--------------
Confidence 3667786 999999999999888 36799999998766544333321 1222233322 3221
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
+..-|+||..+|....+ ..+. ...+. ....+++...+.+.+.. +++.++++|-..
T Consensus 67 ~~~adiVvitag~~~~~----g~~r---~~l~~----~n~~i~~~i~~~i~~~~-p~aivivvtNPv 121 (142)
T d1ojua1 67 LKGSEIIVVTAGLARKP----GMTR---LDLAH----KNAGIIKDIAKKIVENA-PESKILVVTNPM 121 (142)
T ss_dssp GTTCSEEEECCCCCCCS----SCCH---HHHHH----HHHHHHHHHHHHHHTTS-TTCEEEECSSSH
T ss_pred hccccEEEEeccccCCC----CCch---HHHHH----HhhHHHHHHHHHHHhhC-CCcEEEEecCCh
Confidence 23579999999965322 1232 22233 34455666666666654 246777776543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.33 E-value=0.02 Score=47.08 Aligned_cols=45 Identities=24% Similarity=0.331 Sum_probs=38.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
.+|+||+++|-| .|.+|+.+++.|.+.|+ +|++++.+........
T Consensus 23 ~~L~gk~v~IqG-~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~ 67 (201)
T d1c1da1 23 GSLDGLTVLVQG-LGAVGGSLASLAAEAGA-QLLVADTDTERVAHAV 67 (201)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHH
Confidence 469999999997 88999999999999996 9999999876665543
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.26 E-value=0.037 Score=43.39 Aligned_cols=43 Identities=23% Similarity=0.181 Sum_probs=35.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAK 88 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~ 88 (358)
.|.+++|.|+ |+||...+..+...|+ +|+.+++++++++.+.+
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~ 69 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKE 69 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhh
Confidence 4678999865 9999999999999996 89999999887765533
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.07 E-value=0.05 Score=43.30 Aligned_cols=84 Identities=11% Similarity=0.134 Sum_probs=58.2
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC---------------CCCceEEEEecCCCHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM---------------AKENYTIMHLDLASLDSVR 111 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~---------------~~~~i~~~~~Dl~~~~~i~ 111 (358)
.|-|.|- |-+|.++|++|+++| +.|++.+|++++.+...+.-.. .-.....+-..+.+.+.+.
T Consensus 4 nIg~IGl-G~MG~~mA~~L~~~G-~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 4 DIALIGL-AVMGQNLILNMNDHG-FVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTT-CCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred cEEEEeE-hHHHHHHHHHHHHCC-CeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 4666665 999999999999999 7999999999888776544211 0112234445667777888
Q ss_pred HHHHHHHhcCCCccEEEEccc
Q 018331 112 QFVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 112 ~~~~~~~~~~~~iD~lv~~ag 132 (358)
++.+.+.....+=+++|.+.-
T Consensus 82 ~v~~~l~~~~~~g~iiid~sT 102 (176)
T d2pgda2 82 NFIEKLVPLLDIGDIIIDGGN 102 (176)
T ss_dssp HHHHHHHHHCCTTCEEEECSC
T ss_pred HHHHHHHhccccCcEEEecCc
Confidence 888877765544456666543
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.07 E-value=0.016 Score=45.52 Aligned_cols=117 Identities=12% Similarity=0.024 Sum_probs=61.1
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC------cEEEEEecCh--HHHHHHHHHhcC-CCCceEEEEecCCCHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK------WHIIMACRDF--LKAERAAKSAGM-AKENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga------~~Vi~~~r~~--~~~~~~~~~~~~-~~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
.+.|+||+|.+|++++..|+..+. ..+++.+.+. ..++....++.. .......+..--.+. +.
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~---- 76 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEE----IA---- 76 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHH----HH----
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccc----cc----
Confidence 699999999999999999986542 2466666543 233333322221 112222222211111 11
Q ss_pred HhcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 118 RRSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
+...|++|.++|....+ ..+.++ .+..|. .+++...+.+.+.....+.++.+|-
T Consensus 77 ---~~~~dvVVitag~~~~~----g~sr~d---ll~~N~----~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 77 ---FKDLDVAILVGSMPRRD----GMERKD---LLKANV----KIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp ---TTTCSEEEECCSCCCCT----TCCTTT---THHHHH----HHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ---cCCceEEEEecccCCCC----CCchhH---HHHHhH----HHHHHHHHHHHhhCCCceEEEEecC
Confidence 23689999999986432 223322 234444 4555555555443211245555553
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.98 E-value=0.019 Score=46.01 Aligned_cols=46 Identities=37% Similarity=0.452 Sum_probs=38.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
+++||.+||.|+ ||.+++++..|.+.| +|.++.|+.++++...+.+
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~--~i~I~nR~~~ka~~l~~~~ 60 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN--NIIIANRTVEKAEALAKEI 60 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS--EEEEECSSHHHHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc--ceeeehhhhhHHHHHHHHH
Confidence 589999999976 789999999997665 8999999988887776555
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0094 Score=46.50 Aligned_cols=38 Identities=21% Similarity=0.428 Sum_probs=33.0
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
...++||++||+|| |.+|..-++.|++.|| .|.+++..
T Consensus 8 ~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA-~VtVvap~ 45 (150)
T d1kyqa1 8 AHQLKDKRILLIGG-GEVGLTRLYKLMPTGC-KLTLVSPD 45 (150)
T ss_dssp EECCTTCEEEEEEE-SHHHHHHHHHHGGGTC-EEEEEEEE
T ss_pred heeeCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 35799999999999 6799999999999998 87777543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.86 E-value=0.068 Score=43.53 Aligned_cols=73 Identities=19% Similarity=0.166 Sum_probs=56.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.++.||++|=.|+.+|+ ++..++..|+..|+.++.++..++.+.+.+ .++.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----~~~~~~~~D~~~l------------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----GGVNFMVADVSEI------------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----TTSEEEECCGGGC-------------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----ccccEEEEehhhc-------------
Confidence 57899999999988773 334577788778999999987777666554 4678899998532
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
.+++|+||.|.-+
T Consensus 105 ~~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 105 SGKYDTWIMNPPF 117 (197)
T ss_dssp CCCEEEEEECCCC
T ss_pred CCcceEEEeCccc
Confidence 2589999999765
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.85 E-value=0.12 Score=45.46 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=74.8
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.|+++|=.|+. |+++.+ ++..|+..|+.++.++..++.+.+.+..++ .++.++..|+.+ ....+...
T Consensus 145 ~g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~------~~~~~~~~ 214 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE------EMEKLQKK 214 (324)
T ss_dssp TTCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH------HHHHHHHT
T ss_pred CCCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh------hhHHHHhc
Confidence 37888877665 454443 456787799999999988888877776553 467888888652 23344444
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSIT 187 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~ 187 (358)
..++|+||+++..+... ....... ......+...+++.++. +|.+++.|+..
T Consensus 215 ~~~fD~Vi~DpP~~~~~-------~~~~~~~----~~~y~~l~~~a~~ll~p----GG~lv~~s~s~ 266 (324)
T d2as0a2 215 GEKFDIVVLDPPAFVQH-------EKDLKAG----LRAYFNVNFAGLNLVKD----GGILVTCSCSQ 266 (324)
T ss_dssp TCCEEEEEECCCCSCSS-------GGGHHHH----HHHHHHHHHHHHTTEEE----EEEEEEEECCT
T ss_pred cCCCCchhcCCccccCC-------HHHHHHH----HHHHHHHHHHHHHHcCC----CcEEEEEeCCc
Confidence 56899999998765332 1121211 22334466666666655 36666665443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.033 Score=45.29 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
.-|++.|.|| |-+|..+|..++.+| +.|++++++++.++...+.+
T Consensus 3 ~IkkvaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~a~~~i 47 (192)
T d1f0ya2 3 IVKHVTVIGG-GLMGAGIAQVAAATG-HTVVLVDQTEDILAKSKKGI 47 (192)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHHH
T ss_pred eeEEEEEECc-CHHHHHHHHHHHhCC-CcEEEEECChHHHHHHHhhH
Confidence 3468999998 889999999999999 69999999987766555443
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.043 Score=46.20 Aligned_cols=39 Identities=31% Similarity=0.482 Sum_probs=34.4
Q ss_pred cccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 40 KKTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 40 ~~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
...|++++|+|.| .||+|..++..|+..|..++.+++.+
T Consensus 25 Q~kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 25 QEALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHHHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 3468899999999 78999999999999998899998754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.35 E-value=0.15 Score=40.79 Aligned_cols=40 Identities=23% Similarity=0.141 Sum_probs=34.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
|++.|.|| |-+|..+|..++.+| +.|++++++++.++...
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G-~~V~l~D~~~~~l~~~~ 44 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKG-TPILMKDINEHGIEQGL 44 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCC-CeEEEEECCHHHHhhhh
Confidence 46888998 889999999999999 69999999987665443
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.05 Score=44.20 Aligned_cols=80 Identities=14% Similarity=0.044 Sum_probs=61.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCccE
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLDV 126 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD~ 126 (358)
++=+|.|+||...++.+.+ ..| .|+.+++++..++.+.+.++..+.++.++..+..+...+ +... ..+.+|.
T Consensus 27 ~lD~t~G~Gghs~~il~~~-~~~--~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~---~~~~--~~~~vdg 98 (192)
T d1m6ya2 27 ILDCTVGEGGHSRAILEHC-PGC--RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFL---LKTL--GIEKVDG 98 (192)
T ss_dssp EEETTCTTSHHHHHHHHHC-TTC--EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHH---HHHT--TCSCEEE
T ss_pred EEEecCCCcHHHHHHHhcC-CCC--eEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHH---HHHc--CCCCcce
Confidence 3445888888888888876 333 899999999999999888888888999999999876543 2221 1358999
Q ss_pred EEEccccc
Q 018331 127 LVCNAAVY 134 (358)
Q Consensus 127 lv~~ag~~ 134 (358)
|+...|+.
T Consensus 99 Il~DlGvS 106 (192)
T d1m6ya2 99 ILMDLGVS 106 (192)
T ss_dssp EEEECSCC
T ss_pred eeeccchh
Confidence 99998874
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=94.15 E-value=1.1 Score=38.87 Aligned_cols=82 Identities=11% Similarity=0.099 Sum_probs=57.2
Q ss_pred CCCeEEEEcC-CCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGA-SSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGa-s~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+|+++|=..+ +|+++. +++..||..|+.++.+...++.+.+.++.+ ..++.+++.|+. +.++....
T Consensus 144 ~g~~VLdlf~~~G~~sl----~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~------~~l~~~~~ 213 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSV----AAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF------DYFKYARR 213 (317)
T ss_dssp BTCEEEEETCTTTHHHH----HHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH------HHHHHHHH
T ss_pred CCCceeecCCCCcHHHH----HHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHH------HHHHHHHh
Confidence 4778875554 455553 345578778999999998888777776544 346889998874 33445555
Q ss_pred cCCCccEEEEcccccC
Q 018331 120 SGRPLDVLVCNAAVYL 135 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~ 135 (358)
...++|+||..+-.+.
T Consensus 214 ~~~~fD~Ii~DPP~f~ 229 (317)
T d2b78a2 214 HHLTYDIIIIDPPSFA 229 (317)
T ss_dssp TTCCEEEEEECCCCC-
T ss_pred hcCCCCEEEEcChhhc
Confidence 5668999999976654
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.06 E-value=0.014 Score=53.75 Aligned_cols=36 Identities=36% Similarity=0.432 Sum_probs=31.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
|++..|||.|+ ||||.++++.|+..|...+.+++.+
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D 70 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMD 70 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCC
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECC
Confidence 67778999998 7799999999999997788888764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=93.80 E-value=0.29 Score=42.62 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=73.5
Q ss_pred cCCCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+|+++|=.++. |+++.+ ++..| ..|+.++.++..++.+.+.++.++ .++.++..|..+. .+.+..
T Consensus 143 ~~~g~rVLDl~~gtG~~s~~----~a~g~-~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~------~~~~~~ 211 (318)
T d1wxxa2 143 RFRGERALDVFSYAGGFALH----LALGF-REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDL------LRRLEK 211 (318)
T ss_dssp GCCEEEEEEETCTTTHHHHH----HHHHE-EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHH------HHHHHH
T ss_pred HhCCCeeeccCCCCcHHHHH----HHhcC-CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHH------hhhhHh
Confidence 3678888876665 444433 44445 599999999988888887776655 3688888887543 334444
Q ss_pred cCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEec
Q 018331 120 SGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGS 185 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS 185 (358)
..+++|+||.++..+..... ..... ......+...+++.++. +|.+++.|.
T Consensus 212 ~~~~fD~Vi~DpP~~~~~~~----~~~~~-------~~~~~~l~~~a~~lLkp----GG~Lv~~sc 262 (318)
T d1wxxa2 212 EGERFDLVVLDPPAFAKGKK----DVERA-------YRAYKEVNLRAIKLLKE----GGILATASC 262 (318)
T ss_dssp TTCCEEEEEECCCCSCCSTT----SHHHH-------HHHHHHHHHHHHHTEEE----EEEEEEEEC
T ss_pred hhcCCCEEEEcCCccccchH----HHHHH-------HHHHHHHHHHHHHHcCC----CCEEEEEeC
Confidence 45689999999876643211 11111 11233456666666665 366666544
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=93.76 E-value=0.14 Score=39.93 Aligned_cols=65 Identities=14% Similarity=0.188 Sum_probs=44.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-------CCceEEEEecCCCHHHHHHHH
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------KENYTIMHLDLASLDSVRQFV 114 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-------~~~i~~~~~Dl~~~~~i~~~~ 114 (358)
+-|. |.|-+|..+|++|+++| +.|++.+|++++.+...+.-... -.+..++-.-+.+.+.+++++
T Consensus 3 IgiI-GlG~MG~~~A~~L~~~G-~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~ 74 (161)
T d1vpda2 3 VGFI-GLGIMGKPMSKNLLKAG-YSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVA 74 (161)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred EEEE-ehhHHHHHHHHHHHHCC-CeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHH
Confidence 4455 56999999999999999 79999999988877665432110 012334444566677777665
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.74 E-value=0.35 Score=37.55 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=53.2
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCC-cEEEEEecChHHHHHHHHHhcC------------CCCceEEEEecCCCHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGK-WHIIMACRDFLKAERAAKSAGM------------AKENYTIMHLDLASLDSVRQ 112 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga-~~Vi~~~r~~~~~~~~~~~~~~------------~~~~i~~~~~Dl~~~~~i~~ 112 (358)
|+++|.| .|-+|..+|+.|.+.|. .+|+.++|+++..+.+.+.-.. ....+.++. .-.+++.+
T Consensus 2 k~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila---~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS---SPVRTFRE 77 (171)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC---SCHHHHHH
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc---CCchhhhh
Confidence 4688887 59999999999999993 3799999998777766554210 011222222 23566777
Q ss_pred HHHHHHhcCCCccEEEEccc
Q 018331 113 FVDTFRRSGRPLDVLVCNAA 132 (358)
Q Consensus 113 ~~~~~~~~~~~iD~lv~~ag 132 (358)
+++++......=.+++..++
T Consensus 78 vl~~l~~~~~~~~ii~d~~s 97 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGS 97 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCS
T ss_pred hhhhhhcccccccccccccc
Confidence 77777765543334444443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.73 E-value=0.27 Score=38.71 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=33.0
Q ss_pred CCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 53 ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 53 as~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
|.|-.|.+++++|+++| +.|++.+|++++.+...+.-
T Consensus 8 GlG~MG~~ma~~L~~~G-~~V~~~dr~~~~~~~l~~~~ 44 (178)
T d1pgja2 8 GLGVMGANLALNIAEKG-FKVAVFNRTYSKSEEFMKAN 44 (178)
T ss_dssp CCSHHHHHHHHHHHHTT-CCEEEECSSHHHHHHHHHHT
T ss_pred eehHHHHHHHHHHHHCC-CeEEEEECCHHHHHHHHHcC
Confidence 78999999999999999 79999999998888776654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=93.71 E-value=0.42 Score=37.44 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-------------CCceEEEEecCCCHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------------KENYTIMHLDLASLDSV 110 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-------------~~~i~~~~~Dl~~~~~i 110 (358)
.|.+||..|+..| ..+..|+++| +.|+.++.++..++.+.+..+.. +..+.++.+|..+....
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G-~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 95 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQG-YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR 95 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHC-CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred CCCEEEEecCcCC---HHHHHHHHcC-CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence 5779999999877 4777999999 69999999998888887766432 33467788888776532
Q ss_pred HHHHHHHHhcCCCccEEEEcccc
Q 018331 111 RQFVDTFRRSGRPLDVLVCNAAV 133 (358)
Q Consensus 111 ~~~~~~~~~~~~~iD~lv~~ag~ 133 (358)
.. ...|+|+.....
T Consensus 96 ~~---------~~~D~i~~~~~l 109 (201)
T d1pjza_ 96 DI---------GHCAAFYDRAAM 109 (201)
T ss_dssp HH---------HSEEEEEEESCG
T ss_pred cc---------cceeEEEEEeee
Confidence 11 157777765444
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.68 E-value=0.037 Score=46.32 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=40.7
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
.+|+||+++|-| .|.+|..+++.|.+.|+ +|+.++.+....+......
T Consensus 35 ~~l~g~~v~IqG-~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~ 82 (230)
T d1leha1 35 DSLEGLAVSVQG-LGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEE 82 (230)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhc
Confidence 469999999886 68999999999999997 9999999887777666554
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.63 E-value=0.31 Score=37.40 Aligned_cols=78 Identities=14% Similarity=0.213 Sum_probs=55.3
Q ss_pred cCCCCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+++|+++|=.|+.+| +|. +.+.+||.+|+.++.+....+.+.+.++.. ..++.+++.|... +++
T Consensus 12 ~~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~------~l~--- 78 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER------AID--- 78 (152)
T ss_dssp CCCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH------HHH---
T ss_pred hCCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccc------ccc---
Confidence 478888886666544 554 456789889999999998888777776654 3568999988532 222
Q ss_pred hcCCCccEEEEccc
Q 018331 119 RSGRPLDVLVCNAA 132 (358)
Q Consensus 119 ~~~~~iD~lv~~ag 132 (358)
...++.|+|+.++.
T Consensus 79 ~~~~~fDiIf~DPP 92 (152)
T d2esra1 79 CLTGRFDLVFLDPP 92 (152)
T ss_dssp HBCSCEEEEEECCS
T ss_pred ccccccceeEechh
Confidence 23457999988754
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.33 E-value=0.1 Score=43.47 Aligned_cols=77 Identities=12% Similarity=0.046 Sum_probs=60.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+++++|=.|+..|. ++..|+++| ..|+.++.++.-++.+.+.....+.++.++..|+.+.+ ..+
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g-~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 100 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKF-KNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-----------INR 100 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-----------CSC
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhC-CccEeeccchhhhhhccccccccCccceeeccchhhhc-----------ccc
Confidence 456789999998885 788889999 59999999998888777766666668999999986542 124
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
++|+|++..+.+
T Consensus 101 ~fD~i~~~~~~~ 112 (246)
T d1y8ca_ 101 KFDLITCCLDST 112 (246)
T ss_dssp CEEEEEECTTGG
T ss_pred cccccceeeeee
Confidence 799999865544
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.10 E-value=0.19 Score=41.64 Aligned_cols=76 Identities=13% Similarity=0.067 Sum_probs=58.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
+.+++|=.|+..| .++..|+++|+ +|+.++.++.-++.+.+.....+.++.++..|+.+.+. .+.
T Consensus 41 ~~~~iLDiGcGtG---~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~-----------~~~ 105 (251)
T d1wzna1 41 EVRRVLDLACGTG---IPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF-----------KNE 105 (251)
T ss_dssp CCCEEEEETCTTC---HHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCC-----------CSC
T ss_pred CCCEEEEeCCCCC---ccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhccc-----------ccc
Confidence 4568999998876 45677889995 99999999988888777776666789999999876531 236
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|+|++.-+..
T Consensus 106 fD~I~~~~~~~ 116 (251)
T d1wzna1 106 FDAVTMFFSTI 116 (251)
T ss_dssp EEEEEECSSGG
T ss_pred cchHhhhhhhh
Confidence 89998865443
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.74 E-value=0.077 Score=39.76 Aligned_cols=70 Identities=17% Similarity=0.218 Sum_probs=48.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
|.++|.|. |.+|+.+++.|. | +.|+++..++...+.... ..+.++.+|.++.+.++++ ...+.+
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~-~~i~vi~~d~~~~~~~~~------~~~~~i~Gd~~~~~~L~~a------~i~~A~ 64 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--G-SEVFVLAEDENVRKKVLR------SGANFVHGDPTRVSDLEKA------NVRGAR 64 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--G-GGEEEEESCTTHHHHHHH------TTCEEEESCTTSHHHHHHT------TCTTCS
T ss_pred CEEEEECC-CHHHHHHHHHHc--C-CCCEEEEcchHHHHHHHh------cCccccccccCCHHHHHHh------hhhcCc
Confidence 45778875 789999999994 4 356667888766554432 3578899999999876664 123567
Q ss_pred EEEEcc
Q 018331 126 VLVCNA 131 (358)
Q Consensus 126 ~lv~~a 131 (358)
.+|.+.
T Consensus 65 ~vi~~~ 70 (129)
T d2fy8a1 65 AVIVNL 70 (129)
T ss_dssp EEEECC
T ss_pred EEEEec
Confidence 777544
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.64 E-value=0.51 Score=36.47 Aligned_cols=67 Identities=10% Similarity=0.064 Sum_probs=45.7
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-------CCceEEEEecCCCHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-------KENYTIMHLDLASLDSVRQFVD 115 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-------~~~i~~~~~Dl~~~~~i~~~~~ 115 (358)
+|-|. |.|-+|.++|++|+++| +.|.+.+|+.++.+.....-... -....++-.-+.+.+.++.++.
T Consensus 3 kIg~I-GlG~MG~~iA~~L~~~g-~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 3 QIAFI-GLGHMGAPMATNLLKAG-YLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp EEEEE-CCSTTHHHHHHHHHHTT-CEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHH
T ss_pred EEEEE-EEHHHHHHHHHHHHHCC-CeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHh
Confidence 35555 67999999999999999 79999999987766554332110 1123455555666777776654
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.099 Score=41.18 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=34.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
.++.||+++|.|-|.-+|+-++..|.++|| +|..+...
T Consensus 33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~ 70 (166)
T d1b0aa1 33 IDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRF 70 (166)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSS
T ss_pred cccccceEEEEeccccccHHHHHHHHHhhc-cccccccc
Confidence 368999999999999999999999999997 88777654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.32 E-value=0.11 Score=39.97 Aligned_cols=42 Identities=31% Similarity=0.399 Sum_probs=35.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
+.+.|+ |.+|.++++.|++.|.+.|++++|++++.+...++.
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~ 44 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL 44 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc
Confidence 566665 999999999999888679999999998887776654
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.14 E-value=0.094 Score=41.55 Aligned_cols=39 Identities=10% Similarity=0.102 Sum_probs=35.0
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
-+++||+++|.|-|.-+|+-++..|+++|| +|..+....
T Consensus 35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t 73 (170)
T d1a4ia1 35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT 73 (170)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC
T ss_pred cccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc
Confidence 368999999999999999999999999997 888877653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=91.40 E-value=0.23 Score=37.19 Aligned_cols=74 Identities=16% Similarity=0.260 Sum_probs=53.3
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEE-EEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHII-MACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi-~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.+.|.|++|-.|+++++.+.+.|. .++ .++++... .+ .... +-.|++.++...+.++.+.+. ++-
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~~------~~--~~~D---VvIDFS~p~~~~~~l~~~~~~--~~p 67 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGVE------EL--DSPD---VVIDFSSPEALPKTVDLCKKY--RAG 67 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEEE------EC--SCCS---EEEECSCGGGHHHHHHHHHHH--TCE
T ss_pred EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcHH------Hh--ccCC---EEEEecCHHHHHHHHHHHHhc--CCC
Confidence 489999999999999999999995 544 44544211 01 1122 347999999999999988776 466
Q ss_pred EEEEccccc
Q 018331 126 VLVCNAAVY 134 (358)
Q Consensus 126 ~lv~~ag~~ 134 (358)
+|+-..|..
T Consensus 68 ~ViGTTG~~ 76 (128)
T d1vm6a3 68 LVLGTTALK 76 (128)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 777777753
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.35 Score=41.74 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=54.7
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc--CCCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~--~~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+||+||-.|+..|+ ++..+++.||.+|++++.++... .+.+... ....++.++..|+.+...
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~-~a~~~~~~~~~~~~i~~~~~~~~~l~~---------- 98 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILY-QAMDIIRLNKLEDTITLIKGKIEEVHL---------- 98 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHH-HHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHH-HHHHHHHHhCCCccceEEEeeHHHhcC----------
Confidence 4689999999998886 56678888988999999987543 3333322 235679999999887531
Q ss_pred cCCCccEEEEcc
Q 018331 120 SGRPLDVLVCNA 131 (358)
Q Consensus 120 ~~~~iD~lv~~a 131 (358)
...++|+||...
T Consensus 99 ~~~~~D~Ivse~ 110 (311)
T d2fyta1 99 PVEKVDVIISEW 110 (311)
T ss_dssp SCSCEEEEEECC
T ss_pred ccccceEEEEee
Confidence 124799999864
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.09 E-value=0.15 Score=40.35 Aligned_cols=80 Identities=18% Similarity=0.060 Sum_probs=52.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC-ceEEEEecC--CCHHHHHHHHHHHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDL--ASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~-~i~~~~~Dl--~~~~~i~~~~~~~~ 118 (358)
+++||.++|.|-|.=+|+-++..|+++|| +|..+..+...... ....- -......|+ ...+.+++...
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga-TVt~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~lk~~~~--- 96 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFT-----RGESLKLNKHHVEDLGEYSEDLLKKCSL--- 96 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEE-----SCCCSSCCCCEEEEEEECCHHHHHHHHH---
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCC-EEEEeccccccccc-----cccceeeeeeccccccccchhHHhhccc---
Confidence 79999999999999999999999999997 88877654211000 00000 011112222 33455565554
Q ss_pred hcCCCccEEEEccccc
Q 018331 119 RSGRPLDVLVCNAAVY 134 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~ 134 (358)
..|++|..+|..
T Consensus 97 ----~aDIvIsavG~p 108 (171)
T d1edza1 97 ----DSDVVITGVPSE 108 (171)
T ss_dssp ----HCSEEEECCCCT
T ss_pred ----cCCEEEEccCCC
Confidence 479999998874
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.04 E-value=1.3 Score=38.13 Aligned_cols=82 Identities=15% Similarity=0.126 Sum_probs=56.0
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC---CCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 44 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA---KENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 44 ~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~---~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
+++++|=..+- |+++. .++..|| .|+.++.+...++.+.+.+..+ ..++.++..|+. ++++....
T Consensus 132 ~~~rVLdlf~~tG~~sl----~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~------~~l~~~~~ 200 (309)
T d2igta1 132 RPLKVLNLFGYTGVASL----VAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM------KFIQREER 200 (309)
T ss_dssp SCCEEEEETCTTCHHHH----HHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH------HHHHHHHH
T ss_pred CCCeEEEecCCCcHHHH----HHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHH------HhHHHHhh
Confidence 46777755544 44444 3456798 8999999998888777765433 346888888874 33455545
Q ss_pred cCCCccEEEEcccccCC
Q 018331 120 SGRPLDVLVCNAAVYLP 136 (358)
Q Consensus 120 ~~~~iD~lv~~ag~~~~ 136 (358)
...++|+||++.-.+..
T Consensus 201 ~~~~fD~IilDPP~f~~ 217 (309)
T d2igta1 201 RGSTYDIILTDPPKFGR 217 (309)
T ss_dssp HTCCBSEEEECCCSEEE
T ss_pred cCCCCCEEEECCCcccc
Confidence 55689999999776543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=91.00 E-value=0.11 Score=40.34 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=29.8
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDFL 81 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~ 81 (358)
+|+|.|+ |.+|..++..|++.| +.|.+++|++.
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQG-HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTT-CEEEEECSSCC
T ss_pred EEEEECc-CHHHHHHHHHHHHCC-CceEEEEcCHH
Confidence 5888888 999999999999999 59999999864
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.41 E-value=0.17 Score=40.17 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=27.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+.|.|+ |..|.++|..|++.| +.|.+.+|+.
T Consensus 2 kI~ViGa-G~~GtalA~~la~~g-~~V~l~~r~~ 33 (180)
T d1txga2 2 IVSILGA-GAMGSALSVPLVDNG-NEVRIWGTEF 33 (180)
T ss_dssp EEEEESC-CHHHHHHHHHHHHHC-CEEEEECCGG
T ss_pred EEEEECC-CHHHHHHHHHHHHCC-CEEEEEEecc
Confidence 3566665 899999999999999 6999999853
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=89.99 E-value=0.59 Score=39.23 Aligned_cols=73 Identities=22% Similarity=0.182 Sum_probs=55.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
..|+++|=.|+.+|+ ++..+++.|+ +|+.++.++..++.+.+..+.++.+..++..|+.+ .. ..+
T Consensus 119 ~~g~~VLDiGcGsG~---l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~------~~-----~~~ 183 (254)
T d2nxca1 119 RPGDKVLDLGTGSGV---LAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA------AL-----PFG 183 (254)
T ss_dssp CTTCEEEEETCTTSH---HHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH------HG-----GGC
T ss_pred CccCEEEEcccchhH---HHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEeccccc------cc-----ccc
Confidence 578999999999886 3345677895 89999999998888888777666677788777421 11 135
Q ss_pred CccEEEEc
Q 018331 123 PLDVLVCN 130 (358)
Q Consensus 123 ~iD~lv~~ 130 (358)
+.|+|+.|
T Consensus 184 ~fD~V~an 191 (254)
T d2nxca1 184 PFDLLVAN 191 (254)
T ss_dssp CEEEEEEE
T ss_pred ccchhhhc
Confidence 79999987
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=89.87 E-value=0.43 Score=37.83 Aligned_cols=82 Identities=13% Similarity=0.249 Sum_probs=57.7
Q ss_pred cCCCCeEEE-EcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHH
Q 018331 42 TLRKGSVII-TGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 42 ~l~~k~~lI-TGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.++|+++|= ..|||++|.+ .+.+||..|++++.+....+.+.+.++.. ..++.++..|+.+ +++...
T Consensus 39 ~~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~------~l~~~~ 108 (182)
T d2fhpa1 39 YFDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANR------ALEQFY 108 (182)
T ss_dssp CCSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH------HHHHHH
T ss_pred hcCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchh------hhhhhc
Confidence 467887764 4556777775 55689989999999988877776666432 3468888888753 445554
Q ss_pred hcCCCccEEEEcccc
Q 018331 119 RSGRPLDVLVCNAAV 133 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~ 133 (358)
....++|+|+...-+
T Consensus 109 ~~~~~fDlIflDPPY 123 (182)
T d2fhpa1 109 EEKLQFDLVLLDPPY 123 (182)
T ss_dssp HTTCCEEEEEECCCG
T ss_pred ccCCCcceEEechhh
Confidence 455579999977654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=89.85 E-value=2.7 Score=32.56 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.+.-+++|.|+ |-.|..-++.....|| .|.+++.+.+.++....... .++. .-..+.+.+.+.+.
T Consensus 30 v~pa~V~ViGa-GvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~---~~~~---~~~~~~~~l~~~~~------- 94 (168)
T d1pjca1 30 VKPGKVVILGG-GVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFG---SRVE---LLYSNSAEIETAVA------- 94 (168)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG---GGSE---EEECCHHHHHHHHH-------
T ss_pred CCCcEEEEECC-ChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhc---ccce---eehhhhhhHHHhhc-------
Confidence 34457888876 6789999999999997 99999999888877766554 2333 23455555555544
Q ss_pred CccEEEEcccccCC
Q 018331 123 PLDVLVCNAAVYLP 136 (358)
Q Consensus 123 ~iD~lv~~ag~~~~ 136 (358)
.-|+||.++-+...
T Consensus 95 ~aDivI~aalipG~ 108 (168)
T d1pjca1 95 EADLLIGAVLVPGR 108 (168)
T ss_dssp TCSEEEECCCCTTS
T ss_pred cCcEEEEeeecCCc
Confidence 57999999976543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.63 E-value=0.58 Score=35.24 Aligned_cols=77 Identities=13% Similarity=0.107 Sum_probs=51.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEE-EEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHII-MACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi-~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
++.|.|++|-.|+++++.+.+.....++ .+++.+. +... ...+.. +-.|++.++...+.++.+.+. ++-
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~-~~~~----~~~~~D---vvIDFS~p~~~~~~~~~~~~~--~~~ 70 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDP-LSLL----TDGNTE---VVIDFTHPDVVMGNLEFLIDN--GIH 70 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCC-THHH----HTTTCS---EEEECCCTTTHHHHHHHHHHT--TCE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc-hhhh----ccccCC---EEEEcccHHHHHHHHHHHHhc--CCC
Confidence 4789999999999999998776534544 3454322 1111 111223 448999999999999988775 466
Q ss_pred EEEEcccc
Q 018331 126 VLVCNAAV 133 (358)
Q Consensus 126 ~lv~~ag~ 133 (358)
+|+-..|.
T Consensus 71 ~ViGTTG~ 78 (135)
T d1yl7a1 71 AVVGTTGF 78 (135)
T ss_dssp EEECCCCC
T ss_pred EEEecccc
Confidence 67755554
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.38 E-value=0.63 Score=37.30 Aligned_cols=75 Identities=15% Similarity=0.133 Sum_probs=56.5
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCcc
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPLD 125 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~iD 125 (358)
.+||=.|+..|. ++..|++.| ..|+.++.++..++.+.+.....+.++.++..|..+.. -..+.+|
T Consensus 39 ~~ILDiGcG~G~---~~~~la~~~-~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~----------~~~~~fD 104 (226)
T d1ve3a1 39 GKVLDLACGVGG---FSFLLEDYG-FEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS----------FEDKTFD 104 (226)
T ss_dssp CEEEEETCTTSH---HHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC----------SCTTCEE
T ss_pred CEEEEECCCcch---hhhhHhhhh-cccccccccccchhhhhhhhcccccccccccccccccc----------ccCcCce
Confidence 478999998876 667888999 49999999988887777666555667788888887643 1124689
Q ss_pred EEEEccccc
Q 018331 126 VLVCNAAVY 134 (358)
Q Consensus 126 ~lv~~ag~~ 134 (358)
+|++.....
T Consensus 105 ~I~~~~~l~ 113 (226)
T d1ve3a1 105 YVIFIDSIV 113 (226)
T ss_dssp EEEEESCGG
T ss_pred EEEEecchh
Confidence 999876544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.37 E-value=1.1 Score=35.31 Aligned_cols=74 Identities=15% Similarity=0.113 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC--CceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK--ENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~--~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+|.++|=.|+.+| .++..|+..+ .+|+.++.++..++.+.+.++..+ .++.++.+|.. +.....
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~----------~~~~~~ 98 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAP----------EALCKI 98 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHH----------HHHTTS
T ss_pred CCCEEEEEECCeE---cccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchh----------hccccc
Confidence 4667887887766 3345566777 499999999988888888776653 68999998842 222334
Q ss_pred CCccEEEEcc
Q 018331 122 RPLDVLVCNA 131 (358)
Q Consensus 122 ~~iD~lv~~a 131 (358)
+.+|.++.+.
T Consensus 99 ~~~D~v~~~~ 108 (186)
T d1l3ia_ 99 PDIDIAVVGG 108 (186)
T ss_dssp CCEEEEEESC
T ss_pred CCcCEEEEeC
Confidence 5799999764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.98 E-value=0.27 Score=37.83 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=33.9
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
+.|. |.|-+|.++++.|++.| +.|++..|+.++.+...+++
T Consensus 3 Ig~I-G~G~mG~al~~~l~~~~-~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 3 IGII-GVGKMASAIIKGLKQTP-HELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp EEEE-CCSHHHHHHHHHHTTSS-CEEEEECSSHHHHHHHHHHH
T ss_pred EEEE-eccHHHHHHHHHHHhCC-CeEEEEcChHHhHHhhcccc
Confidence 3344 78999999999999999 69999999988877766655
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=1.2 Score=32.01 Aligned_cols=70 Identities=19% Similarity=0.137 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
+.++.|.| +|=+|+-++....+.| +++++.+.+++.-... -.-.++..|..|.+.+.+++... .+
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG-~~v~v~d~~~~~PA~~--------va~~~i~~~~~d~~~l~~~~~~~-----~~ 75 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLG-VEVIAVDRYADAPAMH--------VAHRSHVINMLDGDALRRVVELE-----KP 75 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTT-CEEEEEESSTTCGGGG--------GSSEEEECCTTCHHHHHHHHHHH-----CC
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCC-CEEEEEcCCCCCchhh--------cCCeEEECCCCCHHHHHHHHHhh-----CC
Confidence 34699998 5789999999999999 6999999875321110 12367889999999999988754 57
Q ss_pred cEEEE
Q 018331 125 DVLVC 129 (358)
Q Consensus 125 D~lv~ 129 (358)
|+|..
T Consensus 76 DviT~ 80 (111)
T d1kjqa2 76 HYIVP 80 (111)
T ss_dssp SEEEE
T ss_pred ceEEE
Confidence 77753
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.62 E-value=1.2 Score=33.53 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHhCCCcEEEEEecChHHHH--HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 44 RKGSVIITGAS---SGLGLATAKALAETGKWHIIMACRDFLKAE--RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 44 ~~k~~lITGas---~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~--~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
+-|++.|.|+| +..|..+++.|.+.| ++|+.+........ .+...+.+-...+..+.+ ....+.+.++++++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g-~~v~pVnP~~~~i~G~~~~~sl~dlp~~iD~v~i-~vp~~~~~~~~~e~~ 95 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHG-YDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDL-FVKPKLTMEYVEQAI 95 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEETTEECBSSGGGCSSCCSEEEE-CSCHHHHHHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCC-CEEEEECCcccccCCCcccccccccCccceEEEE-EeCHHHHHHHHHHHH
Confidence 46789999999 689999999999999 69998876532111 111112211222222111 245677788888887
Q ss_pred hcCCCccEEEEccccc
Q 018331 119 RSGRPLDVLVCNAAVY 134 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~ 134 (358)
+. ++..++...|..
T Consensus 96 ~~--g~k~v~~~~G~~ 109 (139)
T d2d59a1 96 KK--GAKVVWFQYNTY 109 (139)
T ss_dssp HH--TCSEEEECTTCC
T ss_pred Hh--CCCEEEEecccc
Confidence 75 466788777754
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.58 E-value=0.19 Score=47.21 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=32.2
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
..|...+|+|.|+ ||+|.++++.|+..|..++.+++.+
T Consensus 21 ~~L~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d 58 (529)
T d1yova1 21 EALESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGN 58 (529)
T ss_dssp HHHHHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred HHHhCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 3567778999986 8999999999999998788887653
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=88.08 E-value=1.4 Score=37.18 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=53.2
Q ss_pred CCeEEEEcCCCc-hHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 45 KGSVIITGASSG-LGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 45 ~k~~lITGas~g-IG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
.++++-.|+++| |+.+++ + ... ..|++++.++..++-+.+..+.. ..++.++..|+.+. ....+
T Consensus 111 ~~~vld~g~GsG~i~~~la-~--~~~-~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~---------~~~~~ 177 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVA-K--FSD-AIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP---------FKEKF 177 (271)
T ss_dssp CCEEEEESCTTSHHHHHHH-H--HSS-CEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG---------GGGGT
T ss_pred ccEEEEeeeeeehhhhhhh-h--ccc-ceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc---------ccccc
Confidence 445665555555 555543 2 234 48999999998888887777654 34677788888643 22335
Q ss_pred CCccEEEEcccccC
Q 018331 122 RPLDVLVCNAAVYL 135 (358)
Q Consensus 122 ~~iD~lv~~ag~~~ 135 (358)
+++|+||.|.-+..
T Consensus 178 ~~fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 178 ASIEMILSNPPYVK 191 (271)
T ss_dssp TTCCEEEECCCCBC
T ss_pred CcccEEEEcccccC
Confidence 68999999998874
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.96 E-value=0.59 Score=36.39 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=34.2
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 82 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~ 82 (358)
-|.||+++|.| .|.||+.+|+.|...|+ +|+++..++-.
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~-~V~v~e~dp~~ 59 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGA-RVIITEIDPIN 59 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSCHHH
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCC-eeEeeecccch
Confidence 37899999987 56999999999999997 99999998733
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.95 E-value=0.79 Score=37.35 Aligned_cols=78 Identities=18% Similarity=0.101 Sum_probs=59.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCC-CceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAK-ENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~-~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|.++|..|+.+|--.++..+|+ | ..|+.+.++++-.+...+.+...+ .++.++..|..+. ....+
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g----------~~~~~ 144 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--K-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKG----------FPPKA 144 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--C-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGC----------CGGGC
T ss_pred ccceEEEecCCCChhHHHHHHhh--C-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccC----------CcccC
Confidence 46789999999999889888887 4 378899999877777766665543 6899999997631 11235
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
+.|.++.+++..
T Consensus 145 pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 145 PYDVIIVTAGAP 156 (215)
T ss_dssp CEEEEEECSBBS
T ss_pred cceeEEeecccc
Confidence 799999988875
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=87.86 E-value=4.8 Score=31.70 Aligned_cols=141 Identities=12% Similarity=-0.039 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCC--CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGAS--SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas--~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
..|++.+|.... ...+.+++..|...|+ .++.+.-+.. .+.+ .+.. ....
T Consensus 23 ~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~-~~~~~~~~~~-----------------------~~~~---~l~~-~~~~ 74 (209)
T d2fr1a2 23 LDGTWLVAKYAGTADETSTAAREALESAGA-RVRELVVDAR-----------------------CGRD---ELAE-RLRS 74 (209)
T ss_dssp CCSEEEEEECTTSSHHHHHHHHHHHHTTSC-EEEEEECCTT-----------------------CCHH---HHHH-HHTT
T ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHhCCC-eEEEecCCCc-----------------------cCHH---HHHH-Hhhc
Confidence 345555554332 3477788888989995 6655443211 1122 2222 2234
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEecCCCCCCCcCCCCCCC
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVGSITGNTNTLAGNVPPK 200 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vsS~~~~~~~~~~~~~~~ 200 (358)
.+.++.||+..+....... ..+. ....+...+.+++.+... .. ..++.+++.......
T Consensus 75 ~~~~~~vv~l~~~~~~~~~----~~~~----~~~~~~~~l~l~qal~~~---~~--~~~l~~vT~~a~~~~--------- 132 (209)
T d2fr1a2 75 VGEVAGVLSLLAVDEAEPE----EAPL----ALASLADTLSLVQAMVSA---EL--GCPLWTVTESAVATG--------- 132 (209)
T ss_dssp SCCCSEEEECTTTTCCCCS----SCGG----GCHHHHHHHHHHHHHHHT---TC--CCCEEEEEESCSCSS---------
T ss_pred cCCCCeEEEeCCCCCCCCc----chhH----HHHHHHHHHHHHHHHHhC---CC--CCcEEEEEcCCcccC---------
Confidence 4578889888766432211 1111 122344555666665432 11 257778776543210
Q ss_pred CCccccccccccCCCCCCCCCCCCCCCchhhhhHHhHHHHHHHHHHHHHhhcccCCcEEEEec
Q 018331 201 ANLGDLRGFAGGLNGLNSSSMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGIAFASLY 263 (358)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~al~~~~~~la~e~~~~~gI~v~~v~ 263 (358)
..-..-....+++.+|+|.++.|+ +++.+-.|.
T Consensus 133 ---------------------------~~d~~~~p~~A~l~Gl~r~~~~E~---P~l~~~~vD 165 (209)
T d2fr1a2 133 ---------------------------PFERVRNAAHGALWGVGRVIALEN---PAVWGGLVD 165 (209)
T ss_dssp ---------------------------TTSCCSCGGGHHHHHHHHHHHHHC---GGGEEEEEE
T ss_pred ---------------------------CCcccCCHhHHhHHHHHHHHHHhC---CCceEEEEE
Confidence 011122356788999999999998 565554443
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.23 E-value=0.74 Score=39.72 Aligned_cols=77 Identities=14% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhc--CCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 43 LRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAG--MAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 43 l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~--~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
.+|++||-.|+..|+ ++..++++||.+|+.++.++. ...+.+... ....++.++..|+.+.+. .
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~----------~ 97 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL----------P 97 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC----------S
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc----------c
Confidence 578999999998875 566778889888999998753 344433332 235679999999887531 2
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
..++|+|+.....
T Consensus 98 ~~~~D~ivs~~~~ 110 (316)
T d1oria_ 98 VEKVDIIISEWMG 110 (316)
T ss_dssp SSCEEEEEECCCB
T ss_pred cceeEEEeeeeee
Confidence 3479999886443
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.05 E-value=0.3 Score=41.20 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=29.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEE
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMA 76 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~ 76 (358)
.+++|++++|-| .|.+|+.+++.|.+.|+ +|+.+
T Consensus 32 ~~l~g~~v~IQG-fGnVG~~~a~~L~e~Ga-kvvav 65 (255)
T d1bgva1 32 DTLVGKTVALAG-FGNVAWGAAKKLAELGA-KAVTL 65 (255)
T ss_dssp CCSTTCEEEECC-SSHHHHHHHHHHHHHTC-EEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEE
Confidence 368999999998 79999999999999997 66654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=86.90 E-value=5.2 Score=30.77 Aligned_cols=122 Identities=11% Similarity=0.109 Sum_probs=61.0
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCC----cEEEEEecChHHHHHHHHHhcC----CCCceEEEEecCCCHHHHHHHHHHHH
Q 018331 47 SVIITGASSGLGLATAKALAETGK----WHIIMACRDFLKAERAAKSAGM----AKENYTIMHLDLASLDSVRQFVDTFR 118 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga----~~Vi~~~r~~~~~~~~~~~~~~----~~~~i~~~~~Dl~~~~~i~~~~~~~~ 118 (358)
.+.|.||.+.....++..++.+-. ..|++++.++++++.....+.. .+....+...- |. .+.++
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~---~eal~--- 76 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATT--DP---EEAFT--- 76 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEES--CH---HHHHS---
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecC--Ch---hhccC---
Confidence 467777754322233334443211 3899999998877644433321 12222322221 11 12222
Q ss_pred hcCCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhh----------------hHHHHHHHHHHHHHhcCCCCCCeEEE
Q 018331 119 RSGRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNH----------------LGHFLLSRLLLDDLKQSDYPSKRLII 182 (358)
Q Consensus 119 ~~~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~----------------~~~~~l~~~~~~~l~~~~~~~g~iv~ 182 (358)
.-|+||+.+|....+ ...-+..+..|+ .-...+++-+.+.+.+.. |++-+++
T Consensus 77 ----~AD~Vvitag~~~~~-------g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~-P~A~li~ 144 (167)
T d1u8xx1 77 ----DVDFVMAHIRVGKYA-------MRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYS-PDAWMLN 144 (167)
T ss_dssp ----SCSEEEECCCTTHHH-------HHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE
T ss_pred ----CCCEEEECCCcCCCC-------ceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhC-CCeEEEE
Confidence 689999999874221 111122222231 123345556666665554 4577877
Q ss_pred EecCCC
Q 018331 183 VGSITG 188 (358)
Q Consensus 183 vsS~~~ 188 (358)
+|-...
T Consensus 145 ~TNPvd 150 (167)
T d1u8xx1 145 YSNPAA 150 (167)
T ss_dssp CCSCHH
T ss_pred eCCHHH
Confidence 776543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=86.66 E-value=0.41 Score=39.96 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=30.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 77 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~ 77 (358)
.+|+||+++|-| .|.+|..+++.|.+.|+ +|+.++
T Consensus 27 ~~l~g~~v~IqG-fGnVG~~~a~~L~~~Ga-kvv~vs 61 (242)
T d1v9la1 27 GGIEGKTVAIQG-MGNVGRWTAYWLEKMGA-KVIAVS 61 (242)
T ss_dssp SCCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCC-eEEEee
Confidence 368999999996 89999999999999997 776554
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.58 E-value=0.41 Score=38.51 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=31.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHH
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAA 87 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~ 87 (358)
+.|. |.|.+|..+|..|+++| +.|+.++.+.+..+...
T Consensus 3 I~Vi-GlG~vGl~~a~~la~~g-~~V~g~D~n~~~i~~ln 40 (202)
T d1mv8a2 3 ISIF-GLGYVGAVCAGCLSARG-HEVIGVDVSSTKIDLIN 40 (202)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTT-CEEEEECSCHHHHHHHH
T ss_pred EEEE-CCCHhHHHHHHHHHhCC-CcEEEEeCCHHHHHHhc
Confidence 4555 78999999999999999 79999999976655543
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.58 E-value=0.48 Score=36.16 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=28.1
Q ss_pred CCeEEE-EcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 45 KGSVII-TGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 45 ~k~~lI-TGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
++.++| -.+.+.||.++|..|+++|+ .|.++.+.+
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCC
Confidence 444444 45679999999999999995 999998874
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.46 E-value=0.6 Score=37.05 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=33.9
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHH
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLK 82 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~ 82 (358)
.+.||++.|.| .|.||+++++.+...|+ +|+..++....
T Consensus 41 ~l~~k~vgiiG-~G~IG~~va~~~~~fg~-~v~~~d~~~~~ 79 (184)
T d1ygya1 41 EIFGKTVGVVG-LGRIGQLVAQRIAAFGA-YVVAYDPYVSP 79 (184)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEECTTSCH
T ss_pred cccceeeeecc-ccchhHHHHHHhhhccc-eEEeecCCCCh
Confidence 58899988888 69999999999999995 99999987544
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.33 E-value=0.77 Score=33.19 Aligned_cols=33 Identities=18% Similarity=0.290 Sum_probs=27.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
|.++|.|| |.+|.++|..|++.|. .|.++.|.+
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~-~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGT-KVTILEGAG 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CeEEEECC-Cccceeeeeeeccccc-EEEEEEecc
Confidence 56777765 7999999999999994 999988864
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.05 E-value=0.38 Score=38.47 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=34.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHH
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKS 89 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~ 89 (358)
+.+.|.|| |..|.++|..|++.| +.|.+.+|+++..+.+.+.
T Consensus 8 ~KI~ViGa-G~wGtAlA~~La~~g-~~V~l~~r~~~~~~~i~~~ 49 (189)
T d1n1ea2 8 NKAVVFGS-GAFGTALAMVLSKKC-REVCVWHMNEEEVRLVNEK 49 (189)
T ss_dssp EEEEEECC-SHHHHHHHHHHHTTE-EEEEEECSCHHHHHHHHHH
T ss_pred ceEEEECC-CHHHHHHHHHHHHcC-CeEEEEEecHHHHHHHhhc
Confidence 35777775 569999999999999 6999999998777766543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=85.58 E-value=0.86 Score=35.87 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=26.9
Q ss_pred eEEEEcCCCchHHHHHHHHHhCCCcEEEEEecC
Q 018331 47 SVIITGASSGLGLATAKALAETGKWHIIMACRD 79 (358)
Q Consensus 47 ~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~ 79 (358)
++.|.||||-.|.++++.|++|....+..+..+
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~ 35 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSR 35 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECS
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCceEEEeecc
Confidence 588999999999999999999875555555444
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.56 E-value=0.57 Score=40.14 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.0
Q ss_pred cCCCchHHHHHHHHHhCCCcEEEEEec
Q 018331 52 GASSGLGLATAKALAETGKWHIIMACR 78 (358)
Q Consensus 52 Gas~gIG~aia~~La~~Ga~~Vi~~~r 78 (358)
-.||..|.++|+.|+.+|+ .|+++.+
T Consensus 43 ~SSGk~G~alA~~~~~~Ga-~V~li~g 68 (290)
T d1p9oa_ 43 FSSGRRGATSAEAFLAAGY-GVLFLYR 68 (290)
T ss_dssp CCCCHHHHHHHHHHHHTTC-EEEEEEE
T ss_pred CCchHHHHHHHHHHHHcCC-EEEEEec
Confidence 3456789999999999996 7777654
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.55 E-value=0.55 Score=40.24 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=30.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEe
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMAC 77 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~ 77 (358)
++|+||+++|-|- |.+|+.+|+.|.+.|+ +|+.++
T Consensus 32 ~~L~gktvaIqGf-GnVG~~~A~~L~e~Ga-kvv~vs 66 (293)
T d1hwxa1 32 PGFGDKTFAVQGF-GNVGLHSMRYLHRFGA-KCVAVG 66 (293)
T ss_dssp SSSTTCEEEEECC-SHHHHHHHHHHHHTTC-EEEEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEE
Confidence 4799999999886 8999999999999997 766654
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=85.40 E-value=1.4 Score=35.46 Aligned_cols=80 Identities=16% Similarity=0.049 Sum_probs=54.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC-CCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA-KENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~-~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
.|.++|-.|+.+|--.++..++...+ ..|+.++.++...+.+.+.+... -.++.++..|..+.. ...+
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~----------~~~~ 143 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV----------PEFS 143 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC----------GGGC
T ss_pred ccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc----------cccc
Confidence 36689989888776666555555444 28999999988888777776544 346777777765321 1124
Q ss_pred CccEEEEccccc
Q 018331 123 PLDVLVCNAAVY 134 (358)
Q Consensus 123 ~iD~lv~~ag~~ 134 (358)
.+|+|+.+++..
T Consensus 144 ~fD~I~~~~~~~ 155 (213)
T d1dl5a1 144 PYDVIFVTVGVD 155 (213)
T ss_dssp CEEEEEECSBBS
T ss_pred chhhhhhhccHH
Confidence 699999988754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=85.38 E-value=0.58 Score=34.33 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
+|+++|.| +|.+|.++|..|+++| ..|.++.+.+
T Consensus 30 ~~~vvIIG-gG~iG~E~A~~l~~~g-~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVG-GGVIGLELAATARTAG-VHVSLVETQP 63 (121)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHHHTT-CEEEEEESSS
T ss_pred CCeEEEEC-cchhHHHHHHHhhccc-ceEEEEeecc
Confidence 46777666 4899999999999999 5999998874
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.25 E-value=0.81 Score=33.48 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=27.7
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
|.++|.|| |.||.++|..|++.|+ .|.++.+++
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~-~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGS-KVTVVEFQP 56 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCc-ceeEEEecc
Confidence 46777765 7899999999999995 998888864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.13 E-value=2 Score=32.54 Aligned_cols=81 Identities=20% Similarity=0.143 Sum_probs=51.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC------CCceEEEEecCCCHHHHHHHHHHHHhcC
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTFRRSG 121 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~------~~~i~~~~~Dl~~~~~i~~~~~~~~~~~ 121 (358)
+-+.|- |-.|..+|++|++.| +.+ ...|+.++.....+..... -.....+-..+.+.+.+....+.+....
T Consensus 3 Ig~IGl-G~MG~~ma~~L~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~ 79 (156)
T d2cvza2 3 VAFIGL-GAMGYPMAGHLARRF-PTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL 79 (156)
T ss_dssp EEEECC-STTHHHHHHHHHTTS-CEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred EEEEeH-HHHHHHHHHHHHhCC-CEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccc
Confidence 445554 899999999999988 565 5677776666655554221 1123344455667778888777776655
Q ss_pred CCccEEEEcc
Q 018331 122 RPLDVLVCNA 131 (358)
Q Consensus 122 ~~iD~lv~~a 131 (358)
.+-.++|.++
T Consensus 80 ~~~~~iid~s 89 (156)
T d2cvza2 80 REGTYWVDAT 89 (156)
T ss_dssp CTTEEEEECS
T ss_pred cccccccccc
Confidence 4445555544
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=84.90 E-value=4.1 Score=29.09 Aligned_cols=81 Identities=11% Similarity=0.238 Sum_probs=54.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
||++||.--...+-..+...|-+.| +.|+....+...+-...++ ....+.++..++-+.+. -++++++++..+.+
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g-~~v~~~a~~~~~al~~~~~---~~~dliilD~~mp~~~G-~e~~~~ir~~~~~~ 75 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAG-YEVAGEATNGREAVEKYKE---LKPDIVTMDITMPEMNG-IDAIKEIMKIDPNA 75 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTT-CEEEEEESSHHHHHHHHHH---HCCSEEEEECSCGGGCH-HHHHHHHHHHCTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCHHHHHHHHHh---ccCCEEEEecCCCCCCH-HHHHHHHHHhCCCC
Confidence 7899999999999999999999999 6887666665333333222 23455555555544433 35567776666667
Q ss_pred cEEEEc
Q 018331 125 DVLVCN 130 (358)
Q Consensus 125 D~lv~~ 130 (358)
-+++..
T Consensus 76 pvi~ls 81 (118)
T d1u0sy_ 76 KIIVCS 81 (118)
T ss_dssp CEEEEE
T ss_pred cEEEEE
Confidence 776665
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=84.68 E-value=0.56 Score=37.75 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=33.8
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChH
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFL 81 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~ 81 (358)
..|.||++.|.| .|.||+.+|+.|...|+ +|+.+++...
T Consensus 39 ~el~gk~vgIiG-~G~IG~~va~~l~~fg~-~V~~~d~~~~ 77 (197)
T d1j4aa1 39 REVRDQVVGVVG-TGHIGQVFMQIMEGFGA-KVITYDIFRN 77 (197)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSSCC
T ss_pred ccccCCeEEEec-ccccchhHHHhHhhhcc-cccccCcccc
Confidence 358999999997 58999999999999996 9999987653
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=84.60 E-value=0.62 Score=37.32 Aligned_cols=38 Identities=18% Similarity=0.187 Sum_probs=33.5
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
..|.||++.|.| .|.||+++++.+...|+ +|+..++..
T Consensus 45 ~eL~gktvgIiG-~G~IG~~va~~l~~fg~-~v~~~d~~~ 82 (193)
T d1mx3a1 45 ARIRGETLGIIG-LGRVGQAVALRAKAFGF-NVLFYDPYL 82 (193)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHTTTC-EEEEECTTS
T ss_pred eeeeCceEEEec-cccccccceeeeecccc-ceeeccCcc
Confidence 368999999995 68999999999999995 999988864
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=84.26 E-value=1.8 Score=35.32 Aligned_cols=76 Identities=18% Similarity=0.064 Sum_probs=53.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGRP 123 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~~ 123 (358)
.|.++|-.|+.+|.-.+ .|++.+ .+|+.+.+++...+.+.+.+.. ..++.++..|....- ...++
T Consensus 70 ~g~~VLdIG~GsGy~ta---~La~l~-~~V~aiE~~~~~~~~A~~~~~~-~~nv~~~~~d~~~g~----------~~~~p 134 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTA---LIAEIV-DKVVSVEINEKMYNYASKLLSY-YNNIKLILGDGTLGY----------EEEKP 134 (224)
T ss_dssp TTCEEEEECCTTSHHHH---HHHHHS-SEEEEEESCHHHHHHHHHHHTT-CSSEEEEESCGGGCC----------GGGCC
T ss_pred ccceEEEecCCCCHHHH---HHHHHh-cccccccccHHHHHHHHHHHhc-ccccccccCchhhcc----------hhhhh
Confidence 46689999998885444 455556 4899999998777766665543 468889988875311 11357
Q ss_pred ccEEEEccccc
Q 018331 124 LDVLVCNAAVY 134 (358)
Q Consensus 124 iD~lv~~ag~~ 134 (358)
+|.++.+++..
T Consensus 135 fD~Iiv~~a~~ 145 (224)
T d1vbfa_ 135 YDRVVVWATAP 145 (224)
T ss_dssp EEEEEESSBBS
T ss_pred HHHHHhhcchh
Confidence 99999888753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=83.81 E-value=2.2 Score=33.58 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=34.8
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSA 90 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~ 90 (358)
-.++|.|| |-.|..-++.....|| .|.+++.+...++.+.+..
T Consensus 30 a~VvViGa-GvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~ 72 (183)
T d1l7da1 30 ARVLVFGV-GVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLG 72 (183)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTT
T ss_pred cEEEEEcC-cHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhh
Confidence 36788876 6789999999999998 9999999987777766543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.66 E-value=0.86 Score=36.02 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=32.8
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+.||++.|.|.. .||+.+++.+...|+ +|+..+|+.
T Consensus 39 ~l~gk~vgIiG~G-~IG~~va~~l~~~g~-~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGLG-EIGTRVGKILAALGA-QVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESCS-THHHHHHHHHHHTTC-EEEEECSSC
T ss_pred cccCceEEEeccc-cccccceeeeecccc-ccccccccc
Confidence 4899999999875 599999999999996 999999874
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=83.19 E-value=0.61 Score=37.54 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=33.1
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
..|.||++.|.| .|.||+++++.|...|+ +|+.+++..
T Consensus 41 ~~l~~ktvgIiG-~G~IG~~va~~l~~fg~-~v~~~d~~~ 78 (199)
T d1dxya1 41 KELGQQTVGVMG-TGHIGQVAIKLFKGFGA-KVIAYDPYP 78 (199)
T ss_dssp CCGGGSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred ccccceeeeeee-cccccccccccccccce-eeeccCCcc
Confidence 368899999987 57899999999999995 999998864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=83.14 E-value=0.65 Score=35.33 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=27.7
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHH
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDFLKAE 84 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~ 84 (358)
+-|. |.|.+|.++++.|+++| +.|+..+++.....
T Consensus 3 IgiI-G~G~mG~~ia~~l~~~g-~~v~~~~~~~~~~~ 37 (152)
T d1i36a2 3 VGFI-GFGEVAQTLASRLRSRG-VEVVTSLEGRSPST 37 (152)
T ss_dssp EEEE-SCSHHHHHHHHHHHHTT-CEEEECCTTCCHHH
T ss_pred EEEE-cHHHHHHHHHHHHHHCC-CeEEEEcCchhHHH
Confidence 4455 56999999999999999 68888887764443
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.12 E-value=1.1 Score=36.54 Aligned_cols=78 Identities=12% Similarity=0.080 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC------------------CCCceEEEEecCC
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM------------------AKENYTIMHLDLA 105 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~------------------~~~~i~~~~~Dl~ 105 (358)
.+++||..|+..| ..+..|+++| +.|+.++-++..++.+.+.... .+.++.++.+|+.
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G-~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRG-HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTT-CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCC-CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 5778999998876 4688899999 5999999999888777666432 2346788888876
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEEccccc
Q 018331 106 SLDSVRQFVDTFRRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~iD~lv~~ag~~ 134 (358)
+... ...+.+|+|+-.....
T Consensus 121 ~l~~---------~~~~~fd~i~~~~~l~ 140 (229)
T d2bzga1 121 DLPR---------TNIGKFDMIWDRGALV 140 (229)
T ss_dssp GGGG---------SCCCCEEEEEESSSTT
T ss_pred hccc---------cccCceeEEEEEEEEE
Confidence 4431 1224577777655544
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.98 E-value=4.9 Score=28.83 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=51.0
Q ss_pred CeEEEEcCC---CchHHHHHHHHHhCCCcEEEEEecChHHHH--HHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 46 GSVIITGAS---SGLGLATAKALAETGKWHIIMACRDFLKAE--RAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 46 k~~lITGas---~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~--~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
|++.|.|+| +-.|..+.+.|.+.| ++|+.+..+.+... .+.+.+.+-...+.... =....+.+.++++++.+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g-~~V~pVnP~~~~i~G~~~y~sl~~lp~~~D~vv-i~vp~~~~~~~l~~~~~~ 79 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKG-FEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIV-FVVPPKVGLQVAKEAVEA 79 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTT-CEEEEECTTCSEETTEECBSSGGGSCTTCCEEE-ECSCHHHHHHHHHHHHHT
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCC-CEEEEEccccccccCccccccchhccccceEEE-EEeCHHHHHHHHHHHHhc
Confidence 679999999 568999999999999 79988865432211 11111221122222221 124566777777777765
Q ss_pred CCCccEEEEcccc
Q 018331 121 GRPLDVLVCNAAV 133 (358)
Q Consensus 121 ~~~iD~lv~~ag~ 133 (358)
++..++...|.
T Consensus 80 --g~k~v~~~~g~ 90 (116)
T d1y81a1 80 --GFKKLWFQPGA 90 (116)
T ss_dssp --TCCEEEECTTS
T ss_pred --CCceEEeccch
Confidence 35566665554
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=82.82 E-value=0.96 Score=33.08 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
++|+++|.| +|.+|.++|..|++.|. .|.++.+.+
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~-~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGK-KVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccce-EEEEEEecC
Confidence 456777775 57999999999999994 899988864
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.73 E-value=1.8 Score=37.34 Aligned_cols=78 Identities=15% Similarity=0.172 Sum_probs=54.6
Q ss_pred cCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcC--CCCceEEEEecCCCHHHHHHHHHHHHh
Q 018331 42 TLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGM--AKENYTIMHLDLASLDSVRQFVDTFRR 119 (358)
Q Consensus 42 ~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~--~~~~i~~~~~Dl~~~~~i~~~~~~~~~ 119 (358)
..+|++||-.|+..|+ ++..++++||..|++++.++ .++.+.+.... ...++.++..|+.+.. -
T Consensus 36 ~~~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~----------~ 101 (328)
T d1g6q1_ 36 LFKDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH----------L 101 (328)
T ss_dssp HHTTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC----------C
T ss_pred cCCcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc----------C
Confidence 3579999999998874 45677889988999999885 34444333322 3567899999987652 1
Q ss_pred cCCCccEEEEcccc
Q 018331 120 SGRPLDVLVCNAAV 133 (358)
Q Consensus 120 ~~~~iD~lv~~ag~ 133 (358)
..+++|+|+...-.
T Consensus 102 ~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 102 PFPKVDIIISEWMG 115 (328)
T ss_dssp SSSCEEEEEECCCB
T ss_pred cccceeEEEEEecc
Confidence 12479999986543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.60 E-value=1.8 Score=35.21 Aligned_cols=80 Identities=13% Similarity=0.006 Sum_probs=58.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCC------CCceEEEEecCCCHHHHHHHHHHH
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMA------KENYTIMHLDLASLDSVRQFVDTF 117 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~------~~~i~~~~~Dl~~~~~i~~~~~~~ 117 (358)
+|.++|-.|..+|--.++..++.... ..|+.++++++-++.+.+.++.. ..++.+...|.....
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~--------- 145 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY--------- 145 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC---------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc---------
Confidence 46799999999998888888888766 39999999988777776665432 246777777864211
Q ss_pred HhcCCCccEEEEccccc
Q 018331 118 RRSGRPLDVLVCNAAVY 134 (358)
Q Consensus 118 ~~~~~~iD~lv~~ag~~ 134 (358)
...+.+|.|+.+++..
T Consensus 146 -~~~~~fD~I~~~~~~~ 161 (224)
T d1i1na_ 146 -AEEAPYDAIHVGAAAP 161 (224)
T ss_dssp -GGGCCEEEEEECSBBS
T ss_pred -chhhhhhhhhhhcchh
Confidence 1134799999998764
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=82.55 E-value=2.2 Score=31.72 Aligned_cols=86 Identities=15% Similarity=0.180 Sum_probs=49.2
Q ss_pred CCCeEEEEcCC---CchHHHHHHHHHhCCCcEEEEEecChHHH----HHHHHHhcCCCCceEEEEecCCCHHHHHHHHHH
Q 018331 44 RKGSVIITGAS---SGLGLATAKALAETGKWHIIMACRDFLKA----ERAAKSAGMAKENYTIMHLDLASLDSVRQFVDT 116 (358)
Q Consensus 44 ~~k~~lITGas---~gIG~aia~~La~~Ga~~Vi~~~r~~~~~----~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~ 116 (358)
+-|++.|.|+| +..|..+.+.|.+.| +.++.+.-+.... ..+...+.+-...+..+.+ ....+.+.+++++
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g-~~~~~v~~~~~~~~i~g~~~~~~l~~i~~~iD~v~v-~~p~~~v~~~v~~ 89 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQG-YRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDV-FRPPSALMDHLPE 89 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTT-CEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEE-CSCHHHHTTTHHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCC-CCceEEEeccccceeeceecccchhhccCCCceEEE-eccHHHHHHHHHH
Confidence 45789999999 579999999999999 6887765432110 0111111111122222221 2345666666776
Q ss_pred HHhcCCCccEEEEcccc
Q 018331 117 FRRSGRPLDVLVCNAAV 133 (358)
Q Consensus 117 ~~~~~~~iD~lv~~ag~ 133 (358)
+.+. .+..++...|.
T Consensus 90 ~~~~--g~k~i~~q~G~ 104 (136)
T d1iuka_ 90 VLAL--RPGLVWLQSGI 104 (136)
T ss_dssp HHHH--CCSCEEECTTC
T ss_pred HHhh--CCCeEEEecCc
Confidence 6654 34556666664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=82.24 E-value=1 Score=35.44 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=32.3
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
+..+.|.++|.|| |.-|.+.|..|+++| +.|.++.+++
T Consensus 39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G-~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGA-GPAGLAFAINAAARG-HQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECC-SHHHHHHHHHHHTTT-CEEEEEESSS
T ss_pred CCCCCcEEEEECc-cHHHHHHHHHHHhhc-cceEEEeccC
Confidence 4566788999986 678999999999999 6999999864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=82.22 E-value=2.2 Score=33.03 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=47.1
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCCceEEEEecCCCHHHHHHHHHHHHhcCC
Q 018331 44 RKGSVIITGAS-SGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKENYTIMHLDLASLDSVRQFVDTFRRSGR 122 (358)
Q Consensus 44 ~~k~~lITGas-~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~~i~~~~~Dl~~~~~i~~~~~~~~~~~~ 122 (358)
+|+++|=.|+. |.+| .+++.+|+ .|++++.++...+.+.+.++..+....+...|.. .+.........
T Consensus 41 ~g~~vLDl~~G~G~~~----i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d------~~~~~~~~~~~ 109 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVG----LEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVE------VFLPEAKAQGE 109 (171)
T ss_dssp TCCEEEEETCSSCHHH----HHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHH------HHHHHHHHTTC
T ss_pred CCCeEEEeccccchhh----hhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehh------cccccccccCC
Confidence 56666655544 4444 45667897 7889999998888777666554443333333221 12223333345
Q ss_pred CccEEEEccc
Q 018331 123 PLDVLVCNAA 132 (358)
Q Consensus 123 ~iD~lv~~ag 132 (358)
++|+|+.+.-
T Consensus 110 ~fD~If~DPP 119 (171)
T d1ws6a1 110 RFTVAFMAPP 119 (171)
T ss_dssp CEEEEEECCC
T ss_pred ccceeEEccc
Confidence 7999998864
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=81.70 E-value=0.55 Score=39.38 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=31.6
Q ss_pred CCCeEEEEcCCCchHHHH-----HHHHHhCCCcEEEEEecChH
Q 018331 44 RKGSVIITGASSGLGLAT-----AKALAETGKWHIIMACRDFL 81 (358)
Q Consensus 44 ~~k~~lITGas~gIG~ai-----a~~La~~Ga~~Vi~~~r~~~ 81 (358)
.++.++|+.|-||+|+.+ |..|+++| ++|++++-+..
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G-~rVllvD~Dp~ 59 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMG-FDVHLTTSDPA 59 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEESCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-CcEEEEeCCCC
Confidence 467888888899999986 78999999 69999998853
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.59 E-value=0.58 Score=36.65 Aligned_cols=35 Identities=20% Similarity=0.216 Sum_probs=27.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
+|+++|.|| |..|...|..|+++|+..|.++.|++
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 456777775 78999999999999953487878764
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=81.52 E-value=1.1 Score=32.34 Aligned_cols=35 Identities=20% Similarity=0.312 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 44 RKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.+|.++|.| +|.||.++|..|+..|+ .|.++.|.+
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~-~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGR-RTVMLVRTE 55 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcch-hheEeeccc
Confidence 356777766 58999999999999995 888888764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=81.51 E-value=0.88 Score=36.89 Aligned_cols=34 Identities=29% Similarity=0.592 Sum_probs=27.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 45 KGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 45 ~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
.|.|+|.|| |-.|..+|..|+++| .+|.++.|+.
T Consensus 6 ~~kVvVIGa-GiaGl~~A~~L~~~G-~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGS-GVIGLSSALILARKG-YSVHILARDL 39 (268)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHTT-CEEEEEESSC
T ss_pred CCcEEEECc-cHHHHHHHHHHHHCC-CCEEEEeCCC
Confidence 346777775 678999999999999 4999999863
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=81.36 E-value=1.1 Score=35.56 Aligned_cols=38 Identities=24% Similarity=0.195 Sum_probs=33.4
Q ss_pred ccCCCCeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 41 KTLRKGSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 41 ~~l~~k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
..+.++++.|.| .|.||+++++.|...|. +|+.+++..
T Consensus 40 ~~l~~~~vgiiG-~G~IG~~va~~l~~fg~-~v~~~d~~~ 77 (188)
T d2naca1 40 YDLEAMHVGTVA-AGRIGLAVLRRLAPFDV-HLHYTDRHR 77 (188)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHGGGTC-EEEEECSSC
T ss_pred eeccccceeecc-ccccchhhhhhhhccCc-eEEEEeecc
Confidence 468999999988 68899999999999995 999999864
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.26 E-value=1.9 Score=31.41 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.1
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
|.++|.|| |.||.++|..|++.|. .|.++.|++
T Consensus 23 k~vvIvGg-G~iG~E~A~~l~~~G~-~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGA-GYIAVEMAGILSALGS-KTSLMIRHD 55 (125)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred CEEEEEcC-CccHHHHHHHHhcCCc-EEEEEeecc
Confidence 57888876 5799999999999995 999998864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=81.25 E-value=3.5 Score=34.30 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHHhC-CCcEEEEEecChHHHHHHHHHhcCC--CCceEEEEecCCCHHHHHHHHHHHHhc
Q 018331 44 RKGSVIITGASSGLGLATAKALAET-GKWHIIMACRDFLKAERAAKSAGMA--KENYTIMHLDLASLDSVRQFVDTFRRS 120 (358)
Q Consensus 44 ~~k~~lITGas~gIG~aia~~La~~-Ga~~Vi~~~r~~~~~~~~~~~~~~~--~~~i~~~~~Dl~~~~~i~~~~~~~~~~ 120 (358)
++.++|=.|+..|. ++..|+++ |+ .|+.++-++..++.+.+..... ..++.++.+|..+... .
T Consensus 67 ~~~~vLDiGcG~G~---~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~----------~ 132 (282)
T d2o57a1 67 RQAKGLDLGAGYGG---AARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC----------E 132 (282)
T ss_dssp TTCEEEEETCTTSH---HHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS----------C
T ss_pred CCCEEEEeCCCCcH---HHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccc----------c
Confidence 46689989887652 44455554 75 8999999987766665554332 4689999999876421 1
Q ss_pred CCCccEEEEcccccCCCCCCCCCCHHhHHhhhhhhhhHHHHHHHHHHHHHhcCCCCCCeEEEEe
Q 018331 121 GRPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLSRLLLDDLKQSDYPSKRLIIVG 184 (358)
Q Consensus 121 ~~~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~l~~~~~~~g~iv~vs 184 (358)
.+.+|+|+.+....+.+ ++ ..+++.+.+.|+.. |++++..
T Consensus 133 ~~sfD~V~~~~~l~h~~------d~--------------~~~l~~~~~~Lkpg----G~l~~~~ 172 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSP------DK--------------LKVFQECARVLKPR----GVMAITD 172 (282)
T ss_dssp TTCEEEEEEESCGGGCS------CH--------------HHHHHHHHHHEEEE----EEEEEEE
T ss_pred ccccchhhccchhhhcc------CH--------------HHHHHHHHHhcCCC----cEEEEEE
Confidence 24799998876554321 11 12456666777763 6776653
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=80.83 E-value=1.3 Score=37.34 Aligned_cols=75 Identities=21% Similarity=0.181 Sum_probs=53.3
Q ss_pred eEEEEc-CCCchHHHHHHHHHhCCCcEEEEEecChHHHHHHHHHhcCCCC-ceEEEEecCCCHHHHHHHHHHHHhcCCCc
Q 018331 47 SVIITG-ASSGLGLATAKALAETGKWHIIMACRDFLKAERAAKSAGMAKE-NYTIMHLDLASLDSVRQFVDTFRRSGRPL 124 (358)
Q Consensus 47 ~~lITG-as~gIG~aia~~La~~Ga~~Vi~~~r~~~~~~~~~~~~~~~~~-~i~~~~~Dl~~~~~i~~~~~~~~~~~~~i 124 (358)
.+|=.| |||.||.++++.+ .. ..|++++-++..++.+.+..+..+- ++.+++.|+.+.- ...++
T Consensus 111 ~vlDlGtGSG~I~i~la~~~--p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~-----------~~~~f 176 (274)
T d2b3ta1 111 RILDLGTGTGAIALALASER--PD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL-----------AGQQF 176 (274)
T ss_dssp EEEEETCTTSHHHHHHHHHC--TT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG-----------TTCCE
T ss_pred ceeeeehhhhHHHHHHHhhC--Cc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc-----------CCCce
Confidence 344444 5566777776654 23 4999999999888887777765543 6999999986531 12479
Q ss_pred cEEEEcccccC
Q 018331 125 DVLVCNAAVYL 135 (358)
Q Consensus 125 D~lv~~ag~~~ 135 (358)
|+||.|.-+..
T Consensus 177 DlIvsNPPYi~ 187 (274)
T d2b3ta1 177 AMIVSNPPYID 187 (274)
T ss_dssp EEEEECCCCBC
T ss_pred eEEEecchhhh
Confidence 99999998874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=80.62 E-value=1.4 Score=32.16 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=27.9
Q ss_pred CeEEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 46 GSVIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 46 k~~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
|.++|.|| |-||.++|..|++.|+ +|.++.|++
T Consensus 26 ~~~viiG~-G~iglE~A~~~~~~G~-~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGA-GYIGLEMGSVWGRIGS-EVTVVEFAS 58 (123)
T ss_dssp SEEEESCC-SHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred CeEEEEcc-chHHHHHHHHHHhcCC-eEEEEEEcc
Confidence 46777765 8999999999999995 999998864
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.54 E-value=0.65 Score=36.29 Aligned_cols=36 Identities=11% Similarity=-0.125 Sum_probs=23.8
Q ss_pred eEEEEcC-CCchHHHHHHHHHhCC---CcEEEEEecChHH
Q 018331 47 SVIITGA-SSGLGLATAKALAETG---KWHIIMACRDFLK 82 (358)
Q Consensus 47 ~~lITGa-s~gIG~aia~~La~~G---a~~Vi~~~r~~~~ 82 (358)
.+.|.|| +.|.+.+++..++... ...+++++.+++.
T Consensus 3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~ 42 (169)
T d1s6ya1 3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGK 42 (169)
T ss_dssp EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGH
T ss_pred EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccH
Confidence 3566665 5677777776666542 1489999988644
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.02 E-value=0.78 Score=36.56 Aligned_cols=31 Identities=16% Similarity=0.141 Sum_probs=26.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCcEEEEEecCh
Q 018331 48 VIITGASSGLGLATAKALAETGKWHIIMACRDF 80 (358)
Q Consensus 48 ~lITGas~gIG~aia~~La~~Ga~~Vi~~~r~~ 80 (358)
|+|.| +|--|..+|..|+++| .+|.++.+++
T Consensus 8 viViG-aG~~Gl~~A~~La~~G-~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDG-KKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTT-CCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCC-CCEEEEcCCC
Confidence 67777 6777999999999999 6999988864
|